@hongmaple0820/med-scale-research-os 0.43.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1104) hide show
  1. package/.scale/mcp-servers.yaml +144 -0
  2. package/.scale/skills.json +830 -0
  3. package/.scale/verification.json +52 -0
  4. package/LICENSE +15 -0
  5. package/README.en.md +156 -0
  6. package/README.md +156 -0
  7. package/dist/adapters/AiderAdapter.d.ts +22 -0
  8. package/dist/adapters/AiderAdapter.js +262 -0
  9. package/dist/adapters/AiderAdapter.js.map +1 -0
  10. package/dist/adapters/AntigravityAdapter.d.ts +4 -0
  11. package/dist/adapters/AntigravityAdapter.js +21 -0
  12. package/dist/adapters/AntigravityAdapter.js.map +1 -0
  13. package/dist/adapters/ClaudeCodeAdapter.d.ts +54 -0
  14. package/dist/adapters/ClaudeCodeAdapter.js +185 -0
  15. package/dist/adapters/ClaudeCodeAdapter.js.map +1 -0
  16. package/dist/adapters/ClineAdapter.d.ts +4 -0
  17. package/dist/adapters/ClineAdapter.js +20 -0
  18. package/dist/adapters/ClineAdapter.js.map +1 -0
  19. package/dist/adapters/CodexAdapter.d.ts +15 -0
  20. package/dist/adapters/CodexAdapter.js +160 -0
  21. package/dist/adapters/CodexAdapter.js.map +1 -0
  22. package/dist/adapters/CursorAdapter.d.ts +14 -0
  23. package/dist/adapters/CursorAdapter.js +171 -0
  24. package/dist/adapters/CursorAdapter.js.map +1 -0
  25. package/dist/adapters/DeepSeekTuiAdapter.d.ts +19 -0
  26. package/dist/adapters/DeepSeekTuiAdapter.js +263 -0
  27. package/dist/adapters/DeepSeekTuiAdapter.js.map +1 -0
  28. package/dist/adapters/DoubaoAdapter.d.ts +14 -0
  29. package/dist/adapters/DoubaoAdapter.js +184 -0
  30. package/dist/adapters/DoubaoAdapter.js.map +1 -0
  31. package/dist/adapters/GeminiAdapter.d.ts +14 -0
  32. package/dist/adapters/GeminiAdapter.js +163 -0
  33. package/dist/adapters/GeminiAdapter.js.map +1 -0
  34. package/dist/adapters/GenericProjectAgentAdapter.d.ts +29 -0
  35. package/dist/adapters/GenericProjectAgentAdapter.js +204 -0
  36. package/dist/adapters/GenericProjectAgentAdapter.js.map +1 -0
  37. package/dist/adapters/HermesAdapter.d.ts +14 -0
  38. package/dist/adapters/HermesAdapter.js +163 -0
  39. package/dist/adapters/HermesAdapter.js.map +1 -0
  40. package/dist/adapters/JCodeAdapter.d.ts +4 -0
  41. package/dist/adapters/JCodeAdapter.js +19 -0
  42. package/dist/adapters/JCodeAdapter.js.map +1 -0
  43. package/dist/adapters/KiloCodeAdapter.d.ts +4 -0
  44. package/dist/adapters/KiloCodeAdapter.js +20 -0
  45. package/dist/adapters/KiloCodeAdapter.js.map +1 -0
  46. package/dist/adapters/KimiAdapter.d.ts +14 -0
  47. package/dist/adapters/KimiAdapter.js +183 -0
  48. package/dist/adapters/KimiAdapter.js.map +1 -0
  49. package/dist/adapters/KiroAdapter.d.ts +14 -0
  50. package/dist/adapters/KiroAdapter.js +180 -0
  51. package/dist/adapters/KiroAdapter.js.map +1 -0
  52. package/dist/adapters/OpenClawAdapter.d.ts +14 -0
  53. package/dist/adapters/OpenClawAdapter.js +163 -0
  54. package/dist/adapters/OpenClawAdapter.js.map +1 -0
  55. package/dist/adapters/OpenCodeAdapter.d.ts +14 -0
  56. package/dist/adapters/OpenCodeAdapter.js +172 -0
  57. package/dist/adapters/OpenCodeAdapter.js.map +1 -0
  58. package/dist/adapters/QCoderAdapter.d.ts +14 -0
  59. package/dist/adapters/QCoderAdapter.js +159 -0
  60. package/dist/adapters/QCoderAdapter.js.map +1 -0
  61. package/dist/adapters/QoderAdapter.d.ts +4 -0
  62. package/dist/adapters/QoderAdapter.js +21 -0
  63. package/dist/adapters/QoderAdapter.js.map +1 -0
  64. package/dist/adapters/TraeAdapter.d.ts +14 -0
  65. package/dist/adapters/TraeAdapter.js +159 -0
  66. package/dist/adapters/TraeAdapter.js.map +1 -0
  67. package/dist/adapters/VSCAdapter.d.ts +14 -0
  68. package/dist/adapters/VSCAdapter.js +159 -0
  69. package/dist/adapters/VSCAdapter.js.map +1 -0
  70. package/dist/adapters/WindsurfAdapter.d.ts +14 -0
  71. package/dist/adapters/WindsurfAdapter.js +185 -0
  72. package/dist/adapters/WindsurfAdapter.js.map +1 -0
  73. package/dist/adapters/WorkBuddyAdapter.d.ts +14 -0
  74. package/dist/adapters/WorkBuddyAdapter.js +159 -0
  75. package/dist/adapters/WorkBuddyAdapter.js.map +1 -0
  76. package/dist/adapters/index.d.ts +32 -0
  77. package/dist/adapters/index.js +87 -0
  78. package/dist/adapters/index.js.map +1 -0
  79. package/dist/agents/AgentChannel.d.ts +43 -0
  80. package/dist/agents/AgentChannel.js +136 -0
  81. package/dist/agents/AgentChannel.js.map +1 -0
  82. package/dist/agents/AgentCoordinator.d.ts +29 -0
  83. package/dist/agents/AgentCoordinator.js +136 -0
  84. package/dist/agents/AgentCoordinator.js.map +1 -0
  85. package/dist/agents/AgentDispatcher.d.ts +24 -0
  86. package/dist/agents/AgentDispatcher.js +112 -0
  87. package/dist/agents/AgentDispatcher.js.map +1 -0
  88. package/dist/agents/AgentManager.d.ts +14 -0
  89. package/dist/agents/AgentManager.js +85 -0
  90. package/dist/agents/AgentManager.js.map +1 -0
  91. package/dist/agents/AgentPool.d.ts +59 -0
  92. package/dist/agents/AgentPool.js +192 -0
  93. package/dist/agents/AgentPool.js.map +1 -0
  94. package/dist/agents/AgentRegistry.d.ts +20 -0
  95. package/dist/agents/AgentRegistry.js +36 -0
  96. package/dist/agents/AgentRegistry.js.map +1 -0
  97. package/dist/agents/AgentSourceLoader.d.ts +73 -0
  98. package/dist/agents/AgentSourceLoader.js +103 -0
  99. package/dist/agents/AgentSourceLoader.js.map +1 -0
  100. package/dist/agents/IAgent.d.ts +53 -0
  101. package/dist/agents/IAgent.js +4 -0
  102. package/dist/agents/IAgent.js.map +1 -0
  103. package/dist/agents/LeadershipPresets.d.ts +16 -0
  104. package/dist/agents/LeadershipPresets.js +152 -0
  105. package/dist/agents/LeadershipPresets.js.map +1 -0
  106. package/dist/agents/definitions/debugger.d.ts +2 -0
  107. package/dist/agents/definitions/debugger.js +6 -0
  108. package/dist/agents/definitions/debugger.js.map +1 -0
  109. package/dist/agents/definitions/doc-writer.d.ts +2 -0
  110. package/dist/agents/definitions/doc-writer.js +6 -0
  111. package/dist/agents/definitions/doc-writer.js.map +1 -0
  112. package/dist/agents/definitions/implementer.d.ts +2 -0
  113. package/dist/agents/definitions/implementer.js +6 -0
  114. package/dist/agents/definitions/implementer.js.map +1 -0
  115. package/dist/agents/definitions/planner.d.ts +2 -0
  116. package/dist/agents/definitions/planner.js +6 -0
  117. package/dist/agents/definitions/planner.js.map +1 -0
  118. package/dist/agents/definitions/researcher.d.ts +2 -0
  119. package/dist/agents/definitions/researcher.js +6 -0
  120. package/dist/agents/definitions/researcher.js.map +1 -0
  121. package/dist/agents/definitions/reviewer.d.ts +2 -0
  122. package/dist/agents/definitions/reviewer.js +6 -0
  123. package/dist/agents/definitions/reviewer.js.map +1 -0
  124. package/dist/agents/definitions/security.d.ts +2 -0
  125. package/dist/agents/definitions/security.js +6 -0
  126. package/dist/agents/definitions/security.js.map +1 -0
  127. package/dist/agents/definitions/tester.d.ts +2 -0
  128. package/dist/agents/definitions/tester.js +6 -0
  129. package/dist/agents/definitions/tester.js.map +1 -0
  130. package/dist/agents/index.d.ts +23 -0
  131. package/dist/agents/index.js +44 -0
  132. package/dist/agents/index.js.map +1 -0
  133. package/dist/agents/profiles.d.ts +26 -0
  134. package/dist/agents/profiles.js +197 -0
  135. package/dist/agents/profiles.js.map +1 -0
  136. package/dist/agents/types.d.ts +262 -0
  137. package/dist/agents/types.js +4 -0
  138. package/dist/agents/types.js.map +1 -0
  139. package/dist/api/cli.d.ts +2 -0
  140. package/dist/api/cli.js +6678 -0
  141. package/dist/api/cli.js.map +1 -0
  142. package/dist/api/doctor.d.ts +83 -0
  143. package/dist/api/doctor.js +982 -0
  144. package/dist/api/doctor.js.map +1 -0
  145. package/dist/api/mcp.d.ts +32 -0
  146. package/dist/api/mcp.js +223 -0
  147. package/dist/api/mcp.js.map +1 -0
  148. package/dist/api/medscale.d.ts +2 -0
  149. package/dist/api/medscale.js +20 -0
  150. package/dist/api/medscale.js.map +1 -0
  151. package/dist/api/quickstart.d.ts +86 -0
  152. package/dist/api/quickstart.js +291 -0
  153. package/dist/api/quickstart.js.map +1 -0
  154. package/dist/artifact/fsm.d.ts +41 -0
  155. package/dist/artifact/fsm.js +221 -0
  156. package/dist/artifact/fsm.js.map +1 -0
  157. package/dist/artifact/fsmDefinitions.d.ts +18 -0
  158. package/dist/artifact/fsmDefinitions.js +296 -0
  159. package/dist/artifact/fsmDefinitions.js.map +1 -0
  160. package/dist/artifact/sqliteStore.d.ts +61 -0
  161. package/dist/artifact/sqliteStore.js +381 -0
  162. package/dist/artifact/sqliteStore.js.map +1 -0
  163. package/dist/artifact/store.d.ts +49 -0
  164. package/dist/artifact/store.js +116 -0
  165. package/dist/artifact/store.js.map +1 -0
  166. package/dist/artifact/types.d.ts +535 -0
  167. package/dist/artifact/types.js +74 -0
  168. package/dist/artifact/types.js.map +1 -0
  169. package/dist/bootstrap/DependencyBootstrap.d.ts +112 -0
  170. package/dist/bootstrap/DependencyBootstrap.js +1046 -0
  171. package/dist/bootstrap/DependencyBootstrap.js.map +1 -0
  172. package/dist/bootstrap/DependencyBootstrapRenderer.d.ts +3 -0
  173. package/dist/bootstrap/DependencyBootstrapRenderer.js +138 -0
  174. package/dist/bootstrap/DependencyBootstrapRenderer.js.map +1 -0
  175. package/dist/bridge/PythonBridge.d.ts +80 -0
  176. package/dist/bridge/PythonBridge.js +437 -0
  177. package/dist/bridge/PythonBridge.js.map +1 -0
  178. package/dist/bridge/index.d.ts +2 -0
  179. package/dist/bridge/index.js +7 -0
  180. package/dist/bridge/index.js.map +1 -0
  181. package/dist/bridge/medicalWorkflows.d.ts +29 -0
  182. package/dist/bridge/medicalWorkflows.js +156 -0
  183. package/dist/bridge/medicalWorkflows.js.map +1 -0
  184. package/dist/bridge/types.d.ts +381 -0
  185. package/dist/bridge/types.js +113 -0
  186. package/dist/bridge/types.js.map +1 -0
  187. package/dist/cache/ScanCache.d.ts +41 -0
  188. package/dist/cache/ScanCache.js +120 -0
  189. package/dist/cache/ScanCache.js.map +1 -0
  190. package/dist/capabilities/BrowserCapability.d.ts +30 -0
  191. package/dist/capabilities/BrowserCapability.js +73 -0
  192. package/dist/capabilities/BrowserCapability.js.map +1 -0
  193. package/dist/capabilities/BrowserQACapability.d.ts +165 -0
  194. package/dist/capabilities/BrowserQACapability.js +438 -0
  195. package/dist/capabilities/BrowserQACapability.js.map +1 -0
  196. package/dist/capabilities/CapabilityRegistry.d.ts +17 -0
  197. package/dist/capabilities/CapabilityRegistry.js +65 -0
  198. package/dist/capabilities/CapabilityRegistry.js.map +1 -0
  199. package/dist/capabilities/ComputerCapability.d.ts +28 -0
  200. package/dist/capabilities/ComputerCapability.js +40 -0
  201. package/dist/capabilities/ComputerCapability.js.map +1 -0
  202. package/dist/capabilities/InstalledSkillsIntegration.d.ts +69 -0
  203. package/dist/capabilities/InstalledSkillsIntegration.js +240 -0
  204. package/dist/capabilities/InstalledSkillsIntegration.js.map +1 -0
  205. package/dist/capabilities/SearchCapability.d.ts +46 -0
  206. package/dist/capabilities/SearchCapability.js +88 -0
  207. package/dist/capabilities/SearchCapability.js.map +1 -0
  208. package/dist/capabilities/index.d.ts +6 -0
  209. package/dist/capabilities/index.js +9 -0
  210. package/dist/capabilities/index.js.map +1 -0
  211. package/dist/capabilities/types.d.ts +92 -0
  212. package/dist/capabilities/types.js +7 -0
  213. package/dist/capabilities/types.js.map +1 -0
  214. package/dist/cli/autofixCommands.d.ts +22 -0
  215. package/dist/cli/autofixCommands.js +32 -0
  216. package/dist/cli/autofixCommands.js.map +1 -0
  217. package/dist/cli/cortexCommands.d.ts +71 -0
  218. package/dist/cli/cortexCommands.js +335 -0
  219. package/dist/cli/cortexCommands.js.map +1 -0
  220. package/dist/cli/costCommands.d.ts +13 -0
  221. package/dist/cli/costCommands.js +48 -0
  222. package/dist/cli/costCommands.js.map +1 -0
  223. package/dist/cli/evolutionCommands.d.ts +112 -0
  224. package/dist/cli/evolutionCommands.js +246 -0
  225. package/dist/cli/evolutionCommands.js.map +1 -0
  226. package/dist/cli/gateStatusCommands.d.ts +1 -0
  227. package/dist/cli/gateStatusCommands.js +52 -0
  228. package/dist/cli/gateStatusCommands.js.map +1 -0
  229. package/dist/cli/liteCommands.d.ts +81 -0
  230. package/dist/cli/liteCommands.js +148 -0
  231. package/dist/cli/liteCommands.js.map +1 -0
  232. package/dist/cli/orchCommands.d.ts +43 -0
  233. package/dist/cli/orchCommands.js +135 -0
  234. package/dist/cli/orchCommands.js.map +1 -0
  235. package/dist/cli/phaseCommands.d.ts +248 -0
  236. package/dist/cli/phaseCommands.js +1878 -0
  237. package/dist/cli/phaseCommands.js.map +1 -0
  238. package/dist/cli/promptCommands.d.ts +1 -0
  239. package/dist/cli/promptCommands.js +57 -0
  240. package/dist/cli/promptCommands.js.map +1 -0
  241. package/dist/cli/qaCommands.d.ts +22 -0
  242. package/dist/cli/qaCommands.js +84 -0
  243. package/dist/cli/qaCommands.js.map +1 -0
  244. package/dist/cli/quickstartCommands.d.ts +17 -0
  245. package/dist/cli/quickstartCommands.js +47 -0
  246. package/dist/cli/quickstartCommands.js.map +1 -0
  247. package/dist/cli/runCommand.d.ts +39 -0
  248. package/dist/cli/runCommand.js +113 -0
  249. package/dist/cli/runCommand.js.map +1 -0
  250. package/dist/cli/scoreCommands.d.ts +1 -0
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  253. package/dist/cli/shieldCommands.d.ts +30 -0
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  256. package/dist/cli/targetCommands.d.ts +552 -0
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  259. package/dist/cli/tuiCommands.d.ts +7 -0
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  262. package/dist/cli/vibeCommands.d.ts +64 -0
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  265. package/dist/codegraph/CodeIntelligence.d.ts +147 -0
  266. package/dist/codegraph/CodeIntelligence.js +681 -0
  267. package/dist/codegraph/CodeIntelligence.js.map +1 -0
  268. package/dist/config/profiles.d.ts +64 -0
  269. package/dist/config/profiles.js +223 -0
  270. package/dist/config/profiles.js.map +1 -0
  271. package/dist/context/AntiPatternRegistry.d.ts +38 -0
  272. package/dist/context/AntiPatternRegistry.js +203 -0
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  274. package/dist/context/CavemanCompressor.d.ts +20 -0
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  277. package/dist/context/ContextBudget.d.ts +128 -0
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  280. package/dist/context/ContextBuilder.d.ts +71 -0
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  286. package/dist/context/ProjectAnatomy.d.ts +18 -0
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  289. package/dist/context/SessionStartSequence.d.ts +54 -0
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  292. package/dist/core/ExternalCommand.d.ts +9 -0
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  295. package/dist/core/GbrainRuntime.d.ts +25 -0
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  298. package/dist/core/container.d.ts +14 -0
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  307. package/dist/cortex/GovernanceMetrics.d.ts +66 -0
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  310. package/dist/cortex/InstinctExtractor.d.ts +61 -0
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  319. package/dist/cortex/SessionInjector.d.ts +44 -0
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  322. package/dist/cortex/adapters/ClaudeAdapter.d.ts +17 -0
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  325. package/dist/cortex/adapters/CodexAdapter.d.ts +10 -0
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  328. package/dist/cortex/adapters/CursorAdapter.d.ts +10 -0
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  337. package/dist/dashboard/MedicalWorkflowData.d.ts +155 -0
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  343. package/dist/dashboard/index.d.ts +4 -0
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  346. package/dist/dashboard/server.d.ts +52 -0
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  349. package/dist/env/EnvironmentDoctor.d.ts +66 -0
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  1059. package/target-research-platform/src/analysis/stage3_deep_research/competitive_landscape.py +479 -0
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  1064. package/target-research-platform/src/analysis/stage4_business/milestone_planner.py +844 -0
  1065. package/target-research-platform/src/analysis/stage4_business/pipeline.py +284 -0
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  1068. package/target-research-platform/src/api_clients/base_client.py +186 -0
  1069. package/target-research-platform/src/api_clients/clinicaltrials_client.py +411 -0
  1070. package/target-research-platform/src/api_clients/geo_client.py +1420 -0
  1071. package/target-research-platform/src/api_clients/gtex_client.py +209 -0
  1072. package/target-research-platform/src/api_clients/hpa_client.py +170 -0
  1073. package/target-research-platform/src/api_clients/immune_data_manager.py +247 -0
  1074. package/target-research-platform/src/api_clients/openalex_client.py +86 -0
  1075. package/target-research-platform/src/api_clients/opentargets_client.py +558 -0
  1076. package/target-research-platform/src/api_clients/pubmed_client.py +361 -0
  1077. package/target-research-platform/src/api_clients/tcga_client.py +712 -0
  1078. package/target-research-platform/src/api_clients/timer_client.py +169 -0
  1079. package/target-research-platform/src/dashboard/app.py +2283 -0
  1080. package/target-research-platform/src/dashboard/deliverables.py +710 -0
  1081. package/target-research-platform/src/dashboard/static/artifactPreview.js +96 -0
  1082. package/target-research-platform/src/dashboard/static/index.html +1292 -0
  1083. package/target-research-platform/src/dashboard/status_tracker.py +237 -0
  1084. package/target-research-platform/src/output/__init__.py +42 -0
  1085. package/target-research-platform/src/output/agent_llm_provider.py +171 -0
  1086. package/target-research-platform/src/output/chart_generator.py +550 -0
  1087. package/target-research-platform/src/output/data_exporter.py +215 -0
  1088. package/target-research-platform/src/output/delivery_packager.py +791 -0
  1089. package/target-research-platform/src/output/evidence_package.py +230 -0
  1090. package/target-research-platform/src/output/journal_templates.py +193 -0
  1091. package/target-research-platform/src/output/literature_enricher.py +395 -0
  1092. package/target-research-platform/src/output/literature_reviewer.py +420 -0
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  1094. package/target-research-platform/src/output/manuscript_generator.py +1189 -0
  1095. package/target-research-platform/src/output/manuscript_quality.py +401 -0
  1096. package/target-research-platform/src/output/medical_skills_bridge.py +140 -0
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  1098. package/target-research-platform/src/output/usage_envelope.py +193 -0
  1099. package/target-research-platform/src/utils/__init__.py +1 -0
  1100. package/target-research-platform/src/utils/config.py +125 -0
  1101. package/target-research-platform/src/utils/logger.py +71 -0
  1102. package/target-research-platform/src/validators/__init__.py +13 -0
  1103. package/target-research-platform/src/validators/cross_validator.py +394 -0
  1104. package/target-research-platform/src/validators/data_provenance.py +298 -0
@@ -0,0 +1,66 @@
1
+ import type { Instinct } from './InstinctExtractor.js';
2
+ export interface GovernanceMetrics {
3
+ gates: {
4
+ totalRuns: number;
5
+ passRate: number;
6
+ failRate: number;
7
+ avgDurationMs: number;
8
+ byGate: Record<string, {
9
+ runs: number;
10
+ passed: number;
11
+ avgTokens: number;
12
+ }>;
13
+ };
14
+ instincts: {
15
+ totalExtracted: number;
16
+ totalInjected: number;
17
+ totalApplied: number;
18
+ hitRate: number;
19
+ byConfidence: Record<string, {
20
+ count: number;
21
+ hitRate: number;
22
+ }>;
23
+ };
24
+ cost: {
25
+ totalTokens: number;
26
+ totalCost: number;
27
+ avgTokensPerGate: number;
28
+ estimatedSavingsFromCaching: number;
29
+ estimatedSavingsFromInstincts: number;
30
+ };
31
+ autoFix: {
32
+ totalAttempts: number;
33
+ successRate: number;
34
+ avgAttemptsPerFix: number;
35
+ totalTimeSavedMinutes: number;
36
+ };
37
+ trends: {
38
+ passRateDelta: number;
39
+ costDelta: number;
40
+ instinctHitRateDelta: number;
41
+ };
42
+ period: {
43
+ start: string;
44
+ end: string;
45
+ };
46
+ }
47
+ export declare class GovernanceMetricsCalculator {
48
+ private scaleDir;
49
+ constructor(scaleDir?: string);
50
+ /**
51
+ * Compute full governance metrics from observation logs and instinct store.
52
+ */
53
+ compute(instincts: Instinct[], lookbackDays?: number): GovernanceMetrics;
54
+ /**
55
+ * Render metrics as a terminal report.
56
+ */
57
+ render(metrics: GovernanceMetrics): string;
58
+ private loadObservations;
59
+ private loadObservationsRange;
60
+ private computeGateMetrics;
61
+ private computeInstinctMetrics;
62
+ private computeCostMetrics;
63
+ private computeAutoFixMetrics;
64
+ private computeTrends;
65
+ private computeROIScore;
66
+ }
@@ -0,0 +1,230 @@
1
+ // SCALE Cortex — Governance ROI Metrics
2
+ // 对齐 ECC: multi-hook governance ROI measurement
3
+ // Tracks: gate pass rates, token costs, instinct hit rate, auto-fix success, savings
4
+ import { existsSync, readdirSync, readFileSync } from 'node:fs';
5
+ import { join } from 'node:path';
6
+ import { logger } from '../core/logger.js';
7
+ // ---------------------------------------------------------------------------
8
+ // GovernanceMetricsCalculator
9
+ // ---------------------------------------------------------------------------
10
+ export class GovernanceMetricsCalculator {
11
+ constructor(scaleDir = join(process.cwd(), '.scale')) {
12
+ this.scaleDir = scaleDir;
13
+ }
14
+ /**
15
+ * Compute full governance metrics from observation logs and instinct store.
16
+ */
17
+ compute(instincts, lookbackDays = 30) {
18
+ const observations = this.loadObservations(lookbackDays);
19
+ const prevObservations = this.loadObservationsRange(lookbackDays, lookbackDays * 2);
20
+ // Gates
21
+ const gateMetrics = this.computeGateMetrics(observations);
22
+ // Instincts
23
+ const instinctMetrics = this.computeInstinctMetrics(instincts);
24
+ // Cost
25
+ const cost = this.computeCostMetrics(observations, instinctMetrics);
26
+ // Auto-fix
27
+ const autoFix = this.computeAutoFixMetrics(observations);
28
+ // Trends
29
+ const trends = this.computeTrends(observations, prevObservations, instinctMetrics);
30
+ return {
31
+ gates: gateMetrics,
32
+ instincts: instinctMetrics,
33
+ cost,
34
+ autoFix,
35
+ trends,
36
+ period: {
37
+ start: new Date(Date.now() - lookbackDays * 86400000).toISOString().slice(0, 10),
38
+ end: new Date().toISOString().slice(0, 10),
39
+ },
40
+ };
41
+ }
42
+ /**
43
+ * Render metrics as a terminal report.
44
+ */
45
+ render(metrics) {
46
+ const pct = (n) => `${(n * 100).toFixed(1)}%`;
47
+ const usd = (n) => `$${n.toFixed(2)}`;
48
+ return [
49
+ 'SCALE Cortex — Governance ROI Report',
50
+ `Period: ${metrics.period.start} → ${metrics.period.end}`,
51
+ '',
52
+ '═══ Gate Performance ═══',
53
+ ` Total runs: ${metrics.gates.totalRuns}`,
54
+ ` Pass rate: ${pct(metrics.gates.passRate)}`,
55
+ ` Fail rate: ${pct(metrics.gates.failRate)}`,
56
+ ` Avg duration: ${metrics.gates.avgDurationMs}ms`,
57
+ '',
58
+ '═══ Instinct Performance ═══',
59
+ ` Extracted: ${metrics.instincts.totalExtracted}`,
60
+ ` Injected: ${metrics.instincts.totalInjected}`,
61
+ ` Applied: ${metrics.instincts.totalApplied}`,
62
+ ` Hit rate: ${pct(metrics.instincts.hitRate)}`,
63
+ '',
64
+ '═══ Cost Analysis ═══',
65
+ ` Total tokens: ${metrics.cost.totalTokens.toLocaleString()}`,
66
+ ` Total cost: ${usd(metrics.cost.totalCost)}`,
67
+ ` Avg token/gate: ${Math.round(metrics.cost.avgTokensPerGate).toLocaleString()}`,
68
+ ` Saved (cache): ${usd(metrics.cost.estimatedSavingsFromCaching)}`,
69
+ ` Saved (instinct): ${usd(metrics.cost.estimatedSavingsFromInstincts)}`,
70
+ '',
71
+ '═══ Auto-Fix ═══',
72
+ ` Attempts: ${metrics.autoFix.totalAttempts}`,
73
+ ` Success rate: ${pct(metrics.autoFix.successRate)}`,
74
+ ` Avg attempts: ${metrics.autoFix.avgAttemptsPerFix.toFixed(1)}`,
75
+ ` Time saved: ${metrics.autoFix.totalTimeSavedMinutes} min`,
76
+ '',
77
+ '═══ Trends (△ vs previous period) ═══',
78
+ ` Pass rate: ${metrics.trends.passRateDelta > 0 ? '+' : ''}${pct(metrics.trends.passRateDelta)}`,
79
+ ` Cost: ${metrics.trends.costDelta > 0 ? '+' : ''}${usd(metrics.trends.costDelta)}`,
80
+ ` Instinct hit: ${metrics.trends.instinctHitRateDelta > 0 ? '+' : ''}${pct(metrics.trends.instinctHitRateDelta)}`,
81
+ '',
82
+ `ROI Score: ${this.computeROIScore(metrics)}/100`,
83
+ ].join('\n');
84
+ }
85
+ // -----------------------------------------------------------------------
86
+ // Internal
87
+ // -----------------------------------------------------------------------
88
+ loadObservations(lookbackDays) {
89
+ return this.loadObservationsRange(0, lookbackDays);
90
+ }
91
+ loadObservationsRange(startDaysAgo, endDaysAgo) {
92
+ const obsDir = join(this.scaleDir, 'observations');
93
+ if (!existsSync(obsDir))
94
+ return [];
95
+ const start = Date.now() - endDaysAgo * 86400000;
96
+ const end = Date.now() - startDaysAgo * 86400000;
97
+ const results = [];
98
+ try {
99
+ for (const file of readdirSync(obsDir)) {
100
+ if (!file.endsWith('.jsonl'))
101
+ continue;
102
+ const lines = readFileSync(join(obsDir, file), 'utf-8').split('\n').filter(Boolean);
103
+ for (const line of lines) {
104
+ try {
105
+ const obs = JSON.parse(line);
106
+ const ts = new Date(obs.timestamp).getTime();
107
+ if (ts >= start && ts < end)
108
+ results.push(obs);
109
+ }
110
+ catch { /* skip */ }
111
+ }
112
+ }
113
+ }
114
+ catch (err) {
115
+ logger.warn({ err }, 'Failed to load observations');
116
+ }
117
+ return results;
118
+ }
119
+ computeGateMetrics(observations) {
120
+ const byGate = {};
121
+ let totalRuns = 0;
122
+ let totalPassed = 0;
123
+ let totalDuration = 0;
124
+ for (const obs of observations) {
125
+ totalRuns++;
126
+ if (obs.gateStatus === 'PASS')
127
+ totalPassed++;
128
+ if (obs.gateName) {
129
+ if (!byGate[obs.gateName])
130
+ byGate[obs.gateName] = { runs: 0, passed: 0, avgTokens: 0 };
131
+ byGate[obs.gateName].runs++;
132
+ if (obs.gateStatus === 'PASS')
133
+ byGate[obs.gateName].passed++;
134
+ byGate[obs.gateName].avgTokens += obs.tokensUsed ?? 0;
135
+ }
136
+ totalDuration += obs.durationMs ?? 0;
137
+ }
138
+ // Finalize averages
139
+ for (const gate of Object.values(byGate)) {
140
+ gate.avgTokens = gate.runs > 0 ? Math.round(gate.avgTokens / gate.runs) : 0;
141
+ }
142
+ return {
143
+ totalRuns,
144
+ passRate: totalRuns > 0 ? totalPassed / totalRuns : 0,
145
+ failRate: totalRuns > 0 ? (totalRuns - totalPassed) / totalRuns : 0,
146
+ avgDurationMs: totalRuns > 0 ? Math.round(totalDuration / totalRuns) : 0,
147
+ byGate,
148
+ };
149
+ }
150
+ computeInstinctMetrics(instincts) {
151
+ const byConfidence = {
152
+ 'near-certain (0.9)': { count: 0, hitRate: 0 },
153
+ 'strong (0.7)': { count: 0, hitRate: 0 },
154
+ 'moderate (0.5)': { count: 0, hitRate: 0 },
155
+ 'tentative (0.3)': { count: 0, hitRate: 0 },
156
+ };
157
+ for (const i of instincts) {
158
+ const bucket = i.confidence >= 0.9 ? 'near-certain (0.9)' :
159
+ i.confidence >= 0.7 ? 'strong (0.7)' :
160
+ i.confidence >= 0.5 ? 'moderate (0.5)' : 'tentative (0.3)';
161
+ byConfidence[bucket].count++;
162
+ byConfidence[bucket].hitRate += i.hitRate;
163
+ }
164
+ for (const bucket of Object.values(byConfidence)) {
165
+ bucket.hitRate = bucket.count > 0 ? bucket.hitRate / bucket.count : 0;
166
+ }
167
+ const totalApplied = instincts.reduce((sum, i) => sum + i.appliedCount, 0);
168
+ const totalObs = instincts.reduce((sum, i) => sum + i.observations, 0);
169
+ return {
170
+ totalExtracted: instincts.length,
171
+ totalInjected: instincts.filter(i => i.confidence >= 0.7).length,
172
+ totalApplied,
173
+ hitRate: totalObs > 0 ? totalApplied / totalObs : 0,
174
+ byConfidence,
175
+ };
176
+ }
177
+ computeCostMetrics(observations, _instinctMetrics) {
178
+ const totalTokens = observations.reduce((sum, o) => sum + (o.tokensUsed ?? 0), 0);
179
+ const totalCost = observations.reduce((sum, o) => sum + (o.estimatedCostUsd ?? 0), 0);
180
+ return {
181
+ totalTokens,
182
+ totalCost,
183
+ avgTokensPerGate: observations.length > 0 ? totalTokens / observations.length : 0,
184
+ estimatedSavingsFromCaching: totalCost * 0.15, // ~15% from caching
185
+ estimatedSavingsFromInstincts: totalCost * 0.10, // ~10% from instinct prevention
186
+ };
187
+ }
188
+ computeAutoFixMetrics(observations) {
189
+ const autoFixObs = observations.filter(o => o.gateName?.includes('auto-fix'));
190
+ const successes = autoFixObs.filter(o => o.gateStatus === 'PASS').length;
191
+ const totalAttempts = autoFixObs.length;
192
+ return {
193
+ totalAttempts,
194
+ successRate: totalAttempts > 0 ? successes / totalAttempts : 0,
195
+ avgAttemptsPerFix: totalAttempts > 0 ? totalAttempts / Math.max(successes, 1) : 0,
196
+ totalTimeSavedMinutes: successes * 5, // ~5 min saved per auto-fix
197
+ };
198
+ }
199
+ computeTrends(current, previous, instinctMetrics) {
200
+ const currentPassRate = current.length > 0
201
+ ? current.filter(o => o.gateStatus === 'PASS').length / current.length
202
+ : 0;
203
+ const prevPassRate = previous.length > 0
204
+ ? previous.filter(o => o.gateStatus === 'PASS').length / previous.length
205
+ : 0;
206
+ const currentCost = current.reduce((s, o) => s + (o.estimatedCostUsd ?? 0), 0);
207
+ const prevCost = previous.reduce((s, o) => s + (o.estimatedCostUsd ?? 0), 0);
208
+ return {
209
+ passRateDelta: currentPassRate - prevPassRate,
210
+ costDelta: currentCost - prevCost,
211
+ instinctHitRateDelta: 0, // Requires historical hit rate data
212
+ };
213
+ }
214
+ computeROIScore(metrics) {
215
+ let score = 50; // baseline
216
+ // Gate pass rate contributes up to 20 points
217
+ score += Math.round(metrics.gates.passRate * 20);
218
+ // Instinct hit rate contributes up to 15 points
219
+ score += Math.round(metrics.instincts.hitRate * 15);
220
+ // Auto-fix success contributes up to 10 points
221
+ score += Math.round(metrics.autoFix.successRate * 10);
222
+ // Positive cost savings contribute up to 5 points
223
+ if (metrics.cost.estimatedSavingsFromCaching > 0)
224
+ score += 3;
225
+ if (metrics.cost.estimatedSavingsFromInstincts > 0)
226
+ score += 2;
227
+ return Math.min(100, Math.max(0, score));
228
+ }
229
+ }
230
+ //# sourceMappingURL=GovernanceMetrics.js.map
@@ -0,0 +1 @@
1
+ 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@@ -0,0 +1,61 @@
1
+ export interface Instinct {
2
+ id: string;
3
+ trigger: string;
4
+ confidence: number;
5
+ domain: string;
6
+ source: string;
7
+ scope: 'project' | 'global';
8
+ projectId?: string;
9
+ action: string;
10
+ evidence: string[];
11
+ observations: number;
12
+ createdAt: string;
13
+ updatedAt: string;
14
+ appliedCount: number;
15
+ hitRate: number;
16
+ }
17
+ export interface Observation {
18
+ timestamp: string;
19
+ sessionId: string;
20
+ gateName: string;
21
+ gateStatus: 'PASS' | 'FAIL' | 'WARN';
22
+ errorPattern?: string;
23
+ filePaths: string[];
24
+ rootCause?: string;
25
+ resolution?: string;
26
+ tokensUsed: number;
27
+ modelUsed: string;
28
+ }
29
+ export interface PatternMatch {
30
+ pattern: string;
31
+ count: number;
32
+ observations: Observation[];
33
+ rootCauses: string[];
34
+ resolutions: string[];
35
+ }
36
+ export declare class InstinctExtractor {
37
+ private observationsDir;
38
+ private instinctsDir;
39
+ constructor(baseDir?: string);
40
+ /**
41
+ * Load observations from .scale/observations/ directory.
42
+ */
43
+ loadObservations(): Observation[];
44
+ /**
45
+ * Detect patterns from observations.
46
+ * Groups failures by error pattern, finds recurring root causes.
47
+ */
48
+ detectPatterns(observations: Observation[]): PatternMatch[];
49
+ /**
50
+ * Extract instincts from detected patterns.
51
+ */
52
+ extract(patterns: PatternMatch[]): Instinct[];
53
+ /**
54
+ * Record an observation for future instinct extraction.
55
+ */
56
+ recordObservation(obs: Observation): void;
57
+ private computeConfidence;
58
+ private inferDomain;
59
+ private generateTrigger;
60
+ private buildAction;
61
+ }
@@ -0,0 +1,184 @@
1
+ // SCALE Cortex — Instinct Extractor
2
+ // 对齐 ECC: Observation Log → Pattern Detection → Instinct Creation
3
+ // Confidence scoring: 0.3 tentative → 0.5 moderate → 0.7 strong → 0.9 near-certain
4
+ import { existsSync, mkdirSync, readdirSync, readFileSync, writeFileSync } from 'node:fs';
5
+ import { join } from 'node:path';
6
+ import { createHash } from 'node:crypto';
7
+ import { logger } from '../core/logger.js';
8
+ // ---------------------------------------------------------------------------
9
+ // InstinctExtractor
10
+ // ---------------------------------------------------------------------------
11
+ export class InstinctExtractor {
12
+ constructor(baseDir = join(process.cwd(), '.scale')) {
13
+ this.observationsDir = join(baseDir, 'observations');
14
+ this.instinctsDir = join(baseDir, 'instincts');
15
+ }
16
+ /**
17
+ * Load observations from .scale/observations/ directory.
18
+ */
19
+ loadObservations() {
20
+ if (!existsSync(this.observationsDir))
21
+ return [];
22
+ const observations = [];
23
+ try {
24
+ for (const file of readdirSync(this.observationsDir)) {
25
+ if (!file.endsWith('.jsonl'))
26
+ continue;
27
+ const lines = readFileSync(join(this.observationsDir, file), 'utf-8')
28
+ .split('\n')
29
+ .filter(Boolean);
30
+ for (const line of lines) {
31
+ try {
32
+ observations.push(JSON.parse(line));
33
+ }
34
+ catch { /* skip malformed */ }
35
+ }
36
+ }
37
+ }
38
+ catch (err) {
39
+ logger.warn({ err }, 'Failed to load observations');
40
+ }
41
+ return observations;
42
+ }
43
+ /**
44
+ * Detect patterns from observations.
45
+ * Groups failures by error pattern, finds recurring root causes.
46
+ */
47
+ detectPatterns(observations) {
48
+ const failures = observations.filter(o => o.gateStatus === 'FAIL');
49
+ const patterns = new Map();
50
+ for (const obs of failures) {
51
+ const key = obs.errorPattern ?? obs.gateName;
52
+ if (!patterns.has(key)) {
53
+ patterns.set(key, {
54
+ pattern: key,
55
+ count: 0,
56
+ observations: [],
57
+ rootCauses: [],
58
+ resolutions: [],
59
+ });
60
+ }
61
+ const match = patterns.get(key);
62
+ match.count++;
63
+ match.observations.push(obs);
64
+ if (obs.rootCause && !match.rootCauses.includes(obs.rootCause)) {
65
+ match.rootCauses.push(obs.rootCause);
66
+ }
67
+ if (obs.resolution && !match.resolutions.includes(obs.resolution)) {
68
+ match.resolutions.push(obs.resolution);
69
+ }
70
+ }
71
+ // Sort by count descending
72
+ return Array.from(patterns.values()).sort((a, b) => b.count - a.count);
73
+ }
74
+ /**
75
+ * Extract instincts from detected patterns.
76
+ */
77
+ extract(patterns) {
78
+ const instincts = [];
79
+ for (const pattern of patterns) {
80
+ if (pattern.count < 1)
81
+ continue;
82
+ // Compute confidence
83
+ const confidence = this.computeConfidence(pattern.count, pattern.rootCauses.length);
84
+ // Determine domain
85
+ const domain = this.inferDomain(pattern.pattern);
86
+ // Generate trigger from pattern
87
+ const trigger = this.generateTrigger(pattern);
88
+ // Build action
89
+ const action = this.buildAction(pattern);
90
+ const id = `instinct-${createHash('sha256').update(pattern.pattern).digest('hex').slice(0, 10)}`;
91
+ instincts.push({
92
+ id,
93
+ trigger,
94
+ confidence,
95
+ domain,
96
+ source: `extracted from ${pattern.count} observations`,
97
+ scope: confidence >= 0.7 ? 'global' : 'project',
98
+ action,
99
+ evidence: pattern.observations.slice(0, 5).map(o => `[${o.timestamp}] ${o.gateName}: ${o.errorPattern ?? 'failure'}`),
100
+ observations: pattern.count,
101
+ createdAt: new Date().toISOString(),
102
+ updatedAt: new Date().toISOString(),
103
+ appliedCount: 0,
104
+ hitRate: 0,
105
+ });
106
+ }
107
+ return instincts.sort((a, b) => b.confidence - a.confidence);
108
+ }
109
+ /**
110
+ * Record an observation for future instinct extraction.
111
+ */
112
+ recordObservation(obs) {
113
+ if (!existsSync(this.observationsDir)) {
114
+ mkdirSync(this.observationsDir, { recursive: true });
115
+ }
116
+ const today = new Date().toISOString().slice(0, 10);
117
+ const file = join(this.observationsDir, `${today}.jsonl`);
118
+ writeFileSync(file, JSON.stringify(obs) + '\n', { flag: 'a' });
119
+ }
120
+ // -----------------------------------------------------------------------
121
+ // Internal
122
+ // -----------------------------------------------------------------------
123
+ computeConfidence(count, rootCauseCount) {
124
+ if (count >= 10 && rootCauseCount >= 3)
125
+ return 0.9; // near-certain
126
+ if (count >= 5)
127
+ return 0.7; // strong
128
+ if (count >= 2)
129
+ return 0.5; // moderate
130
+ return 0.3; // tentative
131
+ }
132
+ inferDomain(pattern) {
133
+ const lower = pattern.toLowerCase();
134
+ if (lower.includes('security') || lower.includes('secret') || lower.includes('vuln'))
135
+ return 'security';
136
+ if (lower.includes('test') || lower.includes('coverage') || lower.includes('assert'))
137
+ return 'testing';
138
+ if (lower.includes('lint') || lower.includes('style') || lower.includes('format'))
139
+ return 'code-quality';
140
+ if (lower.includes('build') || lower.includes('compile') || lower.includes('type'))
141
+ return 'build';
142
+ if (lower.includes('governance') || lower.includes('gate') || lower.includes('policy'))
143
+ return 'governance';
144
+ if (lower.includes('import') || lower.includes('dependency') || lower.includes('module'))
145
+ return 'dependencies';
146
+ return 'general';
147
+ }
148
+ generateTrigger(pattern) {
149
+ // Use the most frequent root cause as trigger
150
+ if (pattern.rootCauses.length > 0) {
151
+ return pattern.rootCauses[0];
152
+ }
153
+ return `gate:${pattern.pattern}`;
154
+ }
155
+ buildAction(pattern) {
156
+ const lines = [
157
+ `## Trigger`,
158
+ `${pattern.pattern}`,
159
+ '',
160
+ `## Observed Behavior`,
161
+ `This failure pattern has been observed ${pattern.count} time(s).`,
162
+ '',
163
+ ];
164
+ if (pattern.rootCauses.length > 0) {
165
+ lines.push('## Root Causes');
166
+ for (const rc of pattern.rootCauses.slice(0, 3)) {
167
+ lines.push(`- ${rc}`);
168
+ }
169
+ lines.push('');
170
+ }
171
+ if (pattern.resolutions.length > 0) {
172
+ lines.push('## Known Resolutions');
173
+ for (const r of pattern.resolutions.slice(0, 3)) {
174
+ lines.push(`- ${r}`);
175
+ }
176
+ lines.push('');
177
+ }
178
+ lines.push('## Recommended Action');
179
+ lines.push(`Before performing actions matching "${pattern.pattern}", review the known resolutions above.`);
180
+ lines.push(`If this is a recurrence, escalate by running: scale auto-fix`);
181
+ return lines.join('\n');
182
+ }
183
+ }
184
+ //# sourceMappingURL=InstinctExtractor.js.map
@@ -0,0 +1 @@
1
+ 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@@ -0,0 +1,54 @@
1
+ import type { Instinct } from './InstinctExtractor.js';
2
+ export declare class InstinctStore {
3
+ private baseDir;
4
+ constructor(baseDir?: string);
5
+ /**
6
+ * Save an instinct to disk.
7
+ * Deduplication: if an instinct with the same trigger exists, only keep the higher-confidence one.
8
+ */
9
+ save(instinct: Instinct): string;
10
+ /**
11
+ * Load all instincts from disk.
12
+ */
13
+ loadAll(): Instinct[];
14
+ /**
15
+ * Get instincts filtered by confidence threshold and scope.
16
+ */
17
+ query(options: {
18
+ minConfidence?: number;
19
+ domain?: string;
20
+ scope?: 'project' | 'global';
21
+ projectId?: string;
22
+ }): Instinct[];
23
+ /**
24
+ * Get high-confidence instincts for SessionStart injection (0.7+).
25
+ */
26
+ getInjectionInstincts(projectId?: string): Instinct[];
27
+ /**
28
+ * Find an instinct by trigger pattern.
29
+ */
30
+ findByTrigger(trigger: string): Instinct | null;
31
+ /**
32
+ * Find an instinct by ID.
33
+ */
34
+ findById(id: string): Instinct | null;
35
+ /**
36
+ * Delete an instinct by ID.
37
+ */
38
+ delete(id: string): boolean;
39
+ /**
40
+ * Record an instinct was applied (for hit rate tracking).
41
+ */
42
+ recordApplication(id: string, success: boolean): void;
43
+ /**
44
+ * Get store statistics.
45
+ */
46
+ stats(): {
47
+ total: number;
48
+ byDomain: Record<string, number>;
49
+ byConfidence: Record<string, number>;
50
+ };
51
+ private writeInstinctFile;
52
+ private serializeInstinct;
53
+ private parseInstinctFile;
54
+ }