@hongmaple0820/med-scale-research-os 0.43.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1104) hide show
  1. package/.scale/mcp-servers.yaml +144 -0
  2. package/.scale/skills.json +830 -0
  3. package/.scale/verification.json +52 -0
  4. package/LICENSE +15 -0
  5. package/README.en.md +156 -0
  6. package/README.md +156 -0
  7. package/dist/adapters/AiderAdapter.d.ts +22 -0
  8. package/dist/adapters/AiderAdapter.js +262 -0
  9. package/dist/adapters/AiderAdapter.js.map +1 -0
  10. package/dist/adapters/AntigravityAdapter.d.ts +4 -0
  11. package/dist/adapters/AntigravityAdapter.js +21 -0
  12. package/dist/adapters/AntigravityAdapter.js.map +1 -0
  13. package/dist/adapters/ClaudeCodeAdapter.d.ts +54 -0
  14. package/dist/adapters/ClaudeCodeAdapter.js +185 -0
  15. package/dist/adapters/ClaudeCodeAdapter.js.map +1 -0
  16. package/dist/adapters/ClineAdapter.d.ts +4 -0
  17. package/dist/adapters/ClineAdapter.js +20 -0
  18. package/dist/adapters/ClineAdapter.js.map +1 -0
  19. package/dist/adapters/CodexAdapter.d.ts +15 -0
  20. package/dist/adapters/CodexAdapter.js +160 -0
  21. package/dist/adapters/CodexAdapter.js.map +1 -0
  22. package/dist/adapters/CursorAdapter.d.ts +14 -0
  23. package/dist/adapters/CursorAdapter.js +171 -0
  24. package/dist/adapters/CursorAdapter.js.map +1 -0
  25. package/dist/adapters/DeepSeekTuiAdapter.d.ts +19 -0
  26. package/dist/adapters/DeepSeekTuiAdapter.js +263 -0
  27. package/dist/adapters/DeepSeekTuiAdapter.js.map +1 -0
  28. package/dist/adapters/DoubaoAdapter.d.ts +14 -0
  29. package/dist/adapters/DoubaoAdapter.js +184 -0
  30. package/dist/adapters/DoubaoAdapter.js.map +1 -0
  31. package/dist/adapters/GeminiAdapter.d.ts +14 -0
  32. package/dist/adapters/GeminiAdapter.js +163 -0
  33. package/dist/adapters/GeminiAdapter.js.map +1 -0
  34. package/dist/adapters/GenericProjectAgentAdapter.d.ts +29 -0
  35. package/dist/adapters/GenericProjectAgentAdapter.js +204 -0
  36. package/dist/adapters/GenericProjectAgentAdapter.js.map +1 -0
  37. package/dist/adapters/HermesAdapter.d.ts +14 -0
  38. package/dist/adapters/HermesAdapter.js +163 -0
  39. package/dist/adapters/HermesAdapter.js.map +1 -0
  40. package/dist/adapters/JCodeAdapter.d.ts +4 -0
  41. package/dist/adapters/JCodeAdapter.js +19 -0
  42. package/dist/adapters/JCodeAdapter.js.map +1 -0
  43. package/dist/adapters/KiloCodeAdapter.d.ts +4 -0
  44. package/dist/adapters/KiloCodeAdapter.js +20 -0
  45. package/dist/adapters/KiloCodeAdapter.js.map +1 -0
  46. package/dist/adapters/KimiAdapter.d.ts +14 -0
  47. package/dist/adapters/KimiAdapter.js +183 -0
  48. package/dist/adapters/KimiAdapter.js.map +1 -0
  49. package/dist/adapters/KiroAdapter.d.ts +14 -0
  50. package/dist/adapters/KiroAdapter.js +180 -0
  51. package/dist/adapters/KiroAdapter.js.map +1 -0
  52. package/dist/adapters/OpenClawAdapter.d.ts +14 -0
  53. package/dist/adapters/OpenClawAdapter.js +163 -0
  54. package/dist/adapters/OpenClawAdapter.js.map +1 -0
  55. package/dist/adapters/OpenCodeAdapter.d.ts +14 -0
  56. package/dist/adapters/OpenCodeAdapter.js +172 -0
  57. package/dist/adapters/OpenCodeAdapter.js.map +1 -0
  58. package/dist/adapters/QCoderAdapter.d.ts +14 -0
  59. package/dist/adapters/QCoderAdapter.js +159 -0
  60. package/dist/adapters/QCoderAdapter.js.map +1 -0
  61. package/dist/adapters/QoderAdapter.d.ts +4 -0
  62. package/dist/adapters/QoderAdapter.js +21 -0
  63. package/dist/adapters/QoderAdapter.js.map +1 -0
  64. package/dist/adapters/TraeAdapter.d.ts +14 -0
  65. package/dist/adapters/TraeAdapter.js +159 -0
  66. package/dist/adapters/TraeAdapter.js.map +1 -0
  67. package/dist/adapters/VSCAdapter.d.ts +14 -0
  68. package/dist/adapters/VSCAdapter.js +159 -0
  69. package/dist/adapters/VSCAdapter.js.map +1 -0
  70. package/dist/adapters/WindsurfAdapter.d.ts +14 -0
  71. package/dist/adapters/WindsurfAdapter.js +185 -0
  72. package/dist/adapters/WindsurfAdapter.js.map +1 -0
  73. package/dist/adapters/WorkBuddyAdapter.d.ts +14 -0
  74. package/dist/adapters/WorkBuddyAdapter.js +159 -0
  75. package/dist/adapters/WorkBuddyAdapter.js.map +1 -0
  76. package/dist/adapters/index.d.ts +32 -0
  77. package/dist/adapters/index.js +87 -0
  78. package/dist/adapters/index.js.map +1 -0
  79. package/dist/agents/AgentChannel.d.ts +43 -0
  80. package/dist/agents/AgentChannel.js +136 -0
  81. package/dist/agents/AgentChannel.js.map +1 -0
  82. package/dist/agents/AgentCoordinator.d.ts +29 -0
  83. package/dist/agents/AgentCoordinator.js +136 -0
  84. package/dist/agents/AgentCoordinator.js.map +1 -0
  85. package/dist/agents/AgentDispatcher.d.ts +24 -0
  86. package/dist/agents/AgentDispatcher.js +112 -0
  87. package/dist/agents/AgentDispatcher.js.map +1 -0
  88. package/dist/agents/AgentManager.d.ts +14 -0
  89. package/dist/agents/AgentManager.js +85 -0
  90. package/dist/agents/AgentManager.js.map +1 -0
  91. package/dist/agents/AgentPool.d.ts +59 -0
  92. package/dist/agents/AgentPool.js +192 -0
  93. package/dist/agents/AgentPool.js.map +1 -0
  94. package/dist/agents/AgentRegistry.d.ts +20 -0
  95. package/dist/agents/AgentRegistry.js +36 -0
  96. package/dist/agents/AgentRegistry.js.map +1 -0
  97. package/dist/agents/AgentSourceLoader.d.ts +73 -0
  98. package/dist/agents/AgentSourceLoader.js +103 -0
  99. package/dist/agents/AgentSourceLoader.js.map +1 -0
  100. package/dist/agents/IAgent.d.ts +53 -0
  101. package/dist/agents/IAgent.js +4 -0
  102. package/dist/agents/IAgent.js.map +1 -0
  103. package/dist/agents/LeadershipPresets.d.ts +16 -0
  104. package/dist/agents/LeadershipPresets.js +152 -0
  105. package/dist/agents/LeadershipPresets.js.map +1 -0
  106. package/dist/agents/definitions/debugger.d.ts +2 -0
  107. package/dist/agents/definitions/debugger.js +6 -0
  108. package/dist/agents/definitions/debugger.js.map +1 -0
  109. package/dist/agents/definitions/doc-writer.d.ts +2 -0
  110. package/dist/agents/definitions/doc-writer.js +6 -0
  111. package/dist/agents/definitions/doc-writer.js.map +1 -0
  112. package/dist/agents/definitions/implementer.d.ts +2 -0
  113. package/dist/agents/definitions/implementer.js +6 -0
  114. package/dist/agents/definitions/implementer.js.map +1 -0
  115. package/dist/agents/definitions/planner.d.ts +2 -0
  116. package/dist/agents/definitions/planner.js +6 -0
  117. package/dist/agents/definitions/planner.js.map +1 -0
  118. package/dist/agents/definitions/researcher.d.ts +2 -0
  119. package/dist/agents/definitions/researcher.js +6 -0
  120. package/dist/agents/definitions/researcher.js.map +1 -0
  121. package/dist/agents/definitions/reviewer.d.ts +2 -0
  122. package/dist/agents/definitions/reviewer.js +6 -0
  123. package/dist/agents/definitions/reviewer.js.map +1 -0
  124. package/dist/agents/definitions/security.d.ts +2 -0
  125. package/dist/agents/definitions/security.js +6 -0
  126. package/dist/agents/definitions/security.js.map +1 -0
  127. package/dist/agents/definitions/tester.d.ts +2 -0
  128. package/dist/agents/definitions/tester.js +6 -0
  129. package/dist/agents/definitions/tester.js.map +1 -0
  130. package/dist/agents/index.d.ts +23 -0
  131. package/dist/agents/index.js +44 -0
  132. package/dist/agents/index.js.map +1 -0
  133. package/dist/agents/profiles.d.ts +26 -0
  134. package/dist/agents/profiles.js +197 -0
  135. package/dist/agents/profiles.js.map +1 -0
  136. package/dist/agents/types.d.ts +262 -0
  137. package/dist/agents/types.js +4 -0
  138. package/dist/agents/types.js.map +1 -0
  139. package/dist/api/cli.d.ts +2 -0
  140. package/dist/api/cli.js +6678 -0
  141. package/dist/api/cli.js.map +1 -0
  142. package/dist/api/doctor.d.ts +83 -0
  143. package/dist/api/doctor.js +982 -0
  144. package/dist/api/doctor.js.map +1 -0
  145. package/dist/api/mcp.d.ts +32 -0
  146. package/dist/api/mcp.js +223 -0
  147. package/dist/api/mcp.js.map +1 -0
  148. package/dist/api/medscale.d.ts +2 -0
  149. package/dist/api/medscale.js +20 -0
  150. package/dist/api/medscale.js.map +1 -0
  151. package/dist/api/quickstart.d.ts +86 -0
  152. package/dist/api/quickstart.js +291 -0
  153. package/dist/api/quickstart.js.map +1 -0
  154. package/dist/artifact/fsm.d.ts +41 -0
  155. package/dist/artifact/fsm.js +221 -0
  156. package/dist/artifact/fsm.js.map +1 -0
  157. package/dist/artifact/fsmDefinitions.d.ts +18 -0
  158. package/dist/artifact/fsmDefinitions.js +296 -0
  159. package/dist/artifact/fsmDefinitions.js.map +1 -0
  160. package/dist/artifact/sqliteStore.d.ts +61 -0
  161. package/dist/artifact/sqliteStore.js +381 -0
  162. package/dist/artifact/sqliteStore.js.map +1 -0
  163. package/dist/artifact/store.d.ts +49 -0
  164. package/dist/artifact/store.js +116 -0
  165. package/dist/artifact/store.js.map +1 -0
  166. package/dist/artifact/types.d.ts +535 -0
  167. package/dist/artifact/types.js +74 -0
  168. package/dist/artifact/types.js.map +1 -0
  169. package/dist/bootstrap/DependencyBootstrap.d.ts +112 -0
  170. package/dist/bootstrap/DependencyBootstrap.js +1046 -0
  171. package/dist/bootstrap/DependencyBootstrap.js.map +1 -0
  172. package/dist/bootstrap/DependencyBootstrapRenderer.d.ts +3 -0
  173. package/dist/bootstrap/DependencyBootstrapRenderer.js +138 -0
  174. package/dist/bootstrap/DependencyBootstrapRenderer.js.map +1 -0
  175. package/dist/bridge/PythonBridge.d.ts +80 -0
  176. package/dist/bridge/PythonBridge.js +437 -0
  177. package/dist/bridge/PythonBridge.js.map +1 -0
  178. package/dist/bridge/index.d.ts +2 -0
  179. package/dist/bridge/index.js +7 -0
  180. package/dist/bridge/index.js.map +1 -0
  181. package/dist/bridge/medicalWorkflows.d.ts +29 -0
  182. package/dist/bridge/medicalWorkflows.js +156 -0
  183. package/dist/bridge/medicalWorkflows.js.map +1 -0
  184. package/dist/bridge/types.d.ts +381 -0
  185. package/dist/bridge/types.js +113 -0
  186. package/dist/bridge/types.js.map +1 -0
  187. package/dist/cache/ScanCache.d.ts +41 -0
  188. package/dist/cache/ScanCache.js +120 -0
  189. package/dist/cache/ScanCache.js.map +1 -0
  190. package/dist/capabilities/BrowserCapability.d.ts +30 -0
  191. package/dist/capabilities/BrowserCapability.js +73 -0
  192. package/dist/capabilities/BrowserCapability.js.map +1 -0
  193. package/dist/capabilities/BrowserQACapability.d.ts +165 -0
  194. package/dist/capabilities/BrowserQACapability.js +438 -0
  195. package/dist/capabilities/BrowserQACapability.js.map +1 -0
  196. package/dist/capabilities/CapabilityRegistry.d.ts +17 -0
  197. package/dist/capabilities/CapabilityRegistry.js +65 -0
  198. package/dist/capabilities/CapabilityRegistry.js.map +1 -0
  199. package/dist/capabilities/ComputerCapability.d.ts +28 -0
  200. package/dist/capabilities/ComputerCapability.js +40 -0
  201. package/dist/capabilities/ComputerCapability.js.map +1 -0
  202. package/dist/capabilities/InstalledSkillsIntegration.d.ts +69 -0
  203. package/dist/capabilities/InstalledSkillsIntegration.js +240 -0
  204. package/dist/capabilities/InstalledSkillsIntegration.js.map +1 -0
  205. package/dist/capabilities/SearchCapability.d.ts +46 -0
  206. package/dist/capabilities/SearchCapability.js +88 -0
  207. package/dist/capabilities/SearchCapability.js.map +1 -0
  208. package/dist/capabilities/index.d.ts +6 -0
  209. package/dist/capabilities/index.js +9 -0
  210. package/dist/capabilities/index.js.map +1 -0
  211. package/dist/capabilities/types.d.ts +92 -0
  212. package/dist/capabilities/types.js +7 -0
  213. package/dist/capabilities/types.js.map +1 -0
  214. package/dist/cli/autofixCommands.d.ts +22 -0
  215. package/dist/cli/autofixCommands.js +32 -0
  216. package/dist/cli/autofixCommands.js.map +1 -0
  217. package/dist/cli/cortexCommands.d.ts +71 -0
  218. package/dist/cli/cortexCommands.js +335 -0
  219. package/dist/cli/cortexCommands.js.map +1 -0
  220. package/dist/cli/costCommands.d.ts +13 -0
  221. package/dist/cli/costCommands.js +48 -0
  222. package/dist/cli/costCommands.js.map +1 -0
  223. package/dist/cli/evolutionCommands.d.ts +112 -0
  224. package/dist/cli/evolutionCommands.js +246 -0
  225. package/dist/cli/evolutionCommands.js.map +1 -0
  226. package/dist/cli/gateStatusCommands.d.ts +1 -0
  227. package/dist/cli/gateStatusCommands.js +52 -0
  228. package/dist/cli/gateStatusCommands.js.map +1 -0
  229. package/dist/cli/liteCommands.d.ts +81 -0
  230. package/dist/cli/liteCommands.js +148 -0
  231. package/dist/cli/liteCommands.js.map +1 -0
  232. package/dist/cli/orchCommands.d.ts +43 -0
  233. package/dist/cli/orchCommands.js +135 -0
  234. package/dist/cli/orchCommands.js.map +1 -0
  235. package/dist/cli/phaseCommands.d.ts +248 -0
  236. package/dist/cli/phaseCommands.js +1878 -0
  237. package/dist/cli/phaseCommands.js.map +1 -0
  238. package/dist/cli/promptCommands.d.ts +1 -0
  239. package/dist/cli/promptCommands.js +57 -0
  240. package/dist/cli/promptCommands.js.map +1 -0
  241. package/dist/cli/qaCommands.d.ts +22 -0
  242. package/dist/cli/qaCommands.js +84 -0
  243. package/dist/cli/qaCommands.js.map +1 -0
  244. package/dist/cli/quickstartCommands.d.ts +17 -0
  245. package/dist/cli/quickstartCommands.js +47 -0
  246. package/dist/cli/quickstartCommands.js.map +1 -0
  247. package/dist/cli/runCommand.d.ts +39 -0
  248. package/dist/cli/runCommand.js +113 -0
  249. package/dist/cli/runCommand.js.map +1 -0
  250. package/dist/cli/scoreCommands.d.ts +1 -0
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  253. package/dist/cli/shieldCommands.d.ts +30 -0
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  256. package/dist/cli/targetCommands.d.ts +552 -0
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  259. package/dist/cli/tuiCommands.d.ts +7 -0
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  262. package/dist/cli/vibeCommands.d.ts +64 -0
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  265. package/dist/codegraph/CodeIntelligence.d.ts +147 -0
  266. package/dist/codegraph/CodeIntelligence.js +681 -0
  267. package/dist/codegraph/CodeIntelligence.js.map +1 -0
  268. package/dist/config/profiles.d.ts +64 -0
  269. package/dist/config/profiles.js +223 -0
  270. package/dist/config/profiles.js.map +1 -0
  271. package/dist/context/AntiPatternRegistry.d.ts +38 -0
  272. package/dist/context/AntiPatternRegistry.js +203 -0
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  274. package/dist/context/CavemanCompressor.d.ts +20 -0
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  277. package/dist/context/ContextBudget.d.ts +128 -0
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  280. package/dist/context/ContextBuilder.d.ts +71 -0
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  286. package/dist/context/ProjectAnatomy.d.ts +18 -0
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  289. package/dist/context/SessionStartSequence.d.ts +54 -0
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  292. package/dist/core/ExternalCommand.d.ts +9 -0
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  295. package/dist/core/GbrainRuntime.d.ts +25 -0
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  298. package/dist/core/container.d.ts +14 -0
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  307. package/dist/cortex/GovernanceMetrics.d.ts +66 -0
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  310. package/dist/cortex/InstinctExtractor.d.ts +61 -0
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  319. package/dist/cortex/SessionInjector.d.ts +44 -0
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  322. package/dist/cortex/adapters/ClaudeAdapter.d.ts +17 -0
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  325. package/dist/cortex/adapters/CodexAdapter.d.ts +10 -0
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  328. package/dist/cortex/adapters/CursorAdapter.d.ts +10 -0
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  337. package/dist/dashboard/MedicalWorkflowData.d.ts +155 -0
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  343. package/dist/dashboard/index.d.ts +4 -0
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  346. package/dist/dashboard/server.d.ts +52 -0
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  349. package/dist/env/EnvironmentDoctor.d.ts +66 -0
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  1059. package/target-research-platform/src/analysis/stage3_deep_research/competitive_landscape.py +479 -0
  1060. package/target-research-platform/src/analysis/stage3_deep_research/pipeline.py +763 -0
  1061. package/target-research-platform/src/analysis/stage3_deep_research/target_function.py +290 -0
  1062. package/target-research-platform/src/analysis/stage4_business/__init__.py +12 -0
  1063. package/target-research-platform/src/analysis/stage4_business/business_plan.py +816 -0
  1064. package/target-research-platform/src/analysis/stage4_business/milestone_planner.py +844 -0
  1065. package/target-research-platform/src/analysis/stage4_business/pipeline.py +284 -0
  1066. package/target-research-platform/src/api_clients/__init__.py +29 -0
  1067. package/target-research-platform/src/api_clients/aminer_client.py +163 -0
  1068. package/target-research-platform/src/api_clients/base_client.py +186 -0
  1069. package/target-research-platform/src/api_clients/clinicaltrials_client.py +411 -0
  1070. package/target-research-platform/src/api_clients/geo_client.py +1420 -0
  1071. package/target-research-platform/src/api_clients/gtex_client.py +209 -0
  1072. package/target-research-platform/src/api_clients/hpa_client.py +170 -0
  1073. package/target-research-platform/src/api_clients/immune_data_manager.py +247 -0
  1074. package/target-research-platform/src/api_clients/openalex_client.py +86 -0
  1075. package/target-research-platform/src/api_clients/opentargets_client.py +558 -0
  1076. package/target-research-platform/src/api_clients/pubmed_client.py +361 -0
  1077. package/target-research-platform/src/api_clients/tcga_client.py +712 -0
  1078. package/target-research-platform/src/api_clients/timer_client.py +169 -0
  1079. package/target-research-platform/src/dashboard/app.py +2283 -0
  1080. package/target-research-platform/src/dashboard/deliverables.py +710 -0
  1081. package/target-research-platform/src/dashboard/static/artifactPreview.js +96 -0
  1082. package/target-research-platform/src/dashboard/static/index.html +1292 -0
  1083. package/target-research-platform/src/dashboard/status_tracker.py +237 -0
  1084. package/target-research-platform/src/output/__init__.py +42 -0
  1085. package/target-research-platform/src/output/agent_llm_provider.py +171 -0
  1086. package/target-research-platform/src/output/chart_generator.py +550 -0
  1087. package/target-research-platform/src/output/data_exporter.py +215 -0
  1088. package/target-research-platform/src/output/delivery_packager.py +791 -0
  1089. package/target-research-platform/src/output/evidence_package.py +230 -0
  1090. package/target-research-platform/src/output/journal_templates.py +193 -0
  1091. package/target-research-platform/src/output/literature_enricher.py +395 -0
  1092. package/target-research-platform/src/output/literature_reviewer.py +420 -0
  1093. package/target-research-platform/src/output/manuscript_fact_checker.py +279 -0
  1094. package/target-research-platform/src/output/manuscript_generator.py +1189 -0
  1095. package/target-research-platform/src/output/manuscript_quality.py +401 -0
  1096. package/target-research-platform/src/output/medical_skills_bridge.py +140 -0
  1097. package/target-research-platform/src/output/report_generator.py +542 -0
  1098. package/target-research-platform/src/output/usage_envelope.py +193 -0
  1099. package/target-research-platform/src/utils/__init__.py +1 -0
  1100. package/target-research-platform/src/utils/config.py +125 -0
  1101. package/target-research-platform/src/utils/logger.py +71 -0
  1102. package/target-research-platform/src/validators/__init__.py +13 -0
  1103. package/target-research-platform/src/validators/cross_validator.py +394 -0
  1104. package/target-research-platform/src/validators/data_provenance.py +298 -0
package/target-research-platform/src/dashboard/static/index.html ADDED
@@ -0,0 +1,1292 @@
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+ <!DOCTYPE html>
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+ <html lang="zh-CN">
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+ <head>
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+ <meta charset="UTF-8">
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0">
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+ <title>靶点研究平台 — 医学研究工作台</title>
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+ <style>
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+ :root {
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+ --bg: #f3efe7;
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+ --panel: rgba(255,252,245,0.88);
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+ --ink: #1e2430;
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+ --muted: #6d7485;
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+ --line: rgba(30,36,48,0.12);
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+ --accent: #0f766e;
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+ --accent-2: #d97706;
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+ --ok: #15803d;
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+ --warn: #b45309;
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+ --fail: #b91c1c;
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+ --pending: #94a3b8;
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+ --running: #2563eb;
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+ --shadow: 0 16px 50px rgba(34,45,72,0.12);
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+ }
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+ * { box-sizing: border-box; }
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+ body {
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+ margin: 0; color: var(--ink);
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+ background: radial-gradient(circle at top left, rgba(15,118,110,0.15), transparent 28%),
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+ radial-gradient(circle at top right, rgba(217,119,6,0.12), transparent 24%),
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+ linear-gradient(180deg, #faf7f0 0%, var(--bg) 100%);
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+ font-family: "Segoe UI","PingFang SC","Microsoft YaHei",sans-serif;
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+ min-height: 100vh;
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+ }
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+ .shell { max-width: 1440px; margin: 0 auto; padding: 28px 22px 44px; }
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+ .hero { display: grid; grid-template-columns: 1.2fr 0.8fr; gap: 22px; margin-bottom: 22px; }
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+ .panel {
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+ background: var(--panel); border: 1px solid rgba(255,255,255,0.6);
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+ border-radius: 24px; box-shadow: var(--shadow); backdrop-filter: blur(14px);
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+ }
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+ .hero-card { padding: 28px; position: relative; overflow: hidden; }
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+ .eyebrow {
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+ display: inline-flex; align-items: center; gap: 10px; padding: 8px 12px;
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+ border-radius: 999px; font-size: 12px; letter-spacing: 0.08em;
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+ text-transform: uppercase; color: var(--accent); background: rgba(15,118,110,0.09);
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+ margin-bottom: 14px;
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+ }
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+ h1 { margin: 0 0 14px; font-size: clamp(30px,4vw,54px); line-height: 0.96; letter-spacing: -0.04em; }
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+ .hero-copy { max-width: 700px; color: var(--muted); font-size: 16px; line-height: 1.7; margin-bottom: 22px; }
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+ .status-row { display: flex; flex-wrap: wrap; gap: 12px; align-items: center; }
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+ .status-pill {
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+ padding: 8px 14px; border-radius: 999px; font-size: 13px; font-weight: 600;
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+ background: rgba(37,99,235,0.1); color: var(--running);
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+ }
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+ .status-pill.completed { color: var(--ok); background: rgba(21,128,61,0.1); }
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+ .status-pill.failed { color: var(--fail); background: rgba(185,28,28,0.1); }
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+ .status-pill.idle { color: var(--muted); background: rgba(109,116,133,0.12); }
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+ .hero-meta { display: flex; gap: 18px; flex-wrap: wrap; margin-top: 18px; font-size: 14px; color: var(--muted); }
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+ .hero-metrics { display: grid; grid-template-columns: repeat(2,1fr); gap: 14px; padding: 28px; }
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+ .metric { padding: 18px; border-radius: 18px; background: rgba(255,255,255,0.62); border: 1px solid rgba(30,36,48,0.06); }
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+ .metric-label { font-size: 12px; text-transform: uppercase; letter-spacing: 0.08em; color: var(--muted); margin-bottom: 8px; }
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+ .metric-value { font-size: 28px; font-weight: 700; letter-spacing: -0.04em; }
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+ .grid { display: grid; grid-template-columns: 1.15fr 0.85fr; gap: 22px; }
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+ .section { padding: 24px; }
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+ .section h2 { margin: 0 0 16px; font-size: 18px; letter-spacing: -0.02em; }
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+ .workflow { display: grid; gap: 14px; }
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+ .stage-card {
65
+ padding: 18px; border-radius: 18px; border: 1px solid var(--line);
66
+ background: rgba(255,255,255,0.6); transition: transform 220ms, border-color 220ms, background 220ms;
67
+ }
68
+ .stage-card.running { border-color: rgba(37,99,235,0.35); background: rgba(37,99,235,0.06); transform: translateX(4px); }
69
+ .stage-card.completed { border-color: rgba(21,128,61,0.3); background: rgba(21,128,61,0.06); }
70
+ .stage-card.failed { border-color: rgba(185,28,28,0.35); background: rgba(185,28,28,0.06); }
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+ .stage-top { display: flex; justify-content: space-between; align-items: center; gap: 12px; margin-bottom: 10px; }
72
+ .stage-name { font-size: 16px; font-weight: 700; }
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+ .stage-status { font-size: 12px; font-weight: 700; text-transform: uppercase; letter-spacing: 0.08em; color: var(--muted); }
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+ .stage-metrics { display: flex; flex-wrap: wrap; gap: 8px; }
75
+ .stage-metric { padding: 7px 10px; border-radius: 999px; background: rgba(30,36,48,0.06); font-size: 12px; color: var(--ink); }
76
+ .progress-track { width: 100%; height: 12px; border-radius: 999px; background: rgba(30,36,48,0.08); overflow: hidden; margin-top: 14px; }
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+ .progress-fill { height: 100%; width: 0%; background: linear-gradient(90deg,var(--accent),var(--accent-2)); border-radius: inherit; transition: width 320ms; }
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+ .run-form { display: grid; gap: 12px; }
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+ .form-grid { display: grid; grid-template-columns: repeat(2,1fr); gap: 12px; }
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+ label { display: grid; gap: 6px; font-size: 13px; color: var(--muted); }
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+ input, select, button { font: inherit; }
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+ input, select {
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+ border: 1px solid var(--line); background: rgba(255,255,255,0.85);
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+ border-radius: 14px; padding: 12px 14px; color: var(--ink); outline: none;
85
+ }
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+ input:focus, select:focus { border-color: rgba(37,99,235,0.35); box-shadow: 0 0 0 4px rgba(37,99,235,0.08); }
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+ button { border: none; border-radius: 14px; padding: 13px 16px; font-weight: 700; cursor: pointer; transition: transform 180ms, opacity 180ms; }
88
+ button:hover { transform: translateY(-1px); }
89
+ button:disabled { opacity: 0.55; cursor: not-allowed; transform: none; }
90
+ .primary { background: linear-gradient(135deg,#0f766e,#2563eb); color: white; }
91
+ .log-view {
92
+ min-height: 320px; max-height: 520px; overflow: auto; padding: 16px;
93
+ border-radius: 18px; background: #141924; color: #d9e0f0;
94
+ font-family: Consolas,"SFMono-Regular",monospace; font-size: 12px; line-height: 1.6; white-space: pre-wrap;
95
+ }
96
+ .artifact-list { display: grid; gap: 10px; }
97
+ .artifact-item {
98
+ padding: 12px 14px; border-radius: 16px; background: rgba(255,255,255,0.66);
99
+ border: 1px solid var(--line); font-size: 13px; display: flex; justify-content: space-between; align-items: center;
100
+ }
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+ .artifact-path { margin-top: 4px; color: var(--muted); word-break: break-all; }
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+ .artifact-dl {
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+ padding: 6px 12px; border-radius: 10px; background: var(--accent); color: white;
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+ font-size: 12px; font-weight: 600; cursor: pointer; text-decoration: none; border: none;
105
+ }
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+ .artifact-dl:hover { opacity: 0.85; }
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+ .mini-note { margin-top: 10px; font-size: 12px; color: var(--muted); line-height: 1.6; }
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+ .tab-bar { display: flex; gap: 0; margin-bottom: 0; }
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+ .tab-btn {
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+ padding: 10px 20px; border: none; background: rgba(255,255,255,0.4);
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+ color: var(--muted); font-weight: 600; font-size: 13px; cursor: pointer;
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+ border-bottom: 3px solid transparent; transition: all 200ms;
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+ }
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+ .tab-btn.active { color: var(--accent); border-bottom-color: var(--accent); background: rgba(255,255,255,0.8); }
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+ .tab-content { display: none; }
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+ .tab-content.active { display: block; }
117
+ .chart-container { position: relative; width: 100%; height: 320px; }
118
+ .file-grid { display: grid; grid-template-columns: repeat(auto-fill, minmax(220px, 1fr)); gap: 12px; }
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+ .file-card {
120
+ padding: 16px; border-radius: 14px; background: rgba(255,255,255,0.7);
121
+ border: 1px solid var(--line); transition: transform 150ms, box-shadow 150ms;
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+ display: flex; flex-direction: column; gap: 10px; min-height: 180px;
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+ }
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+ .file-card:hover { transform: translateY(-2px); box-shadow: 0 8px 24px rgba(0,0,0,0.08); }
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+ .file-title { font-size: 15px; font-weight: 700; line-height: 1.4; }
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+ .file-desc { font-size: 12px; color: var(--muted); line-height: 1.6; flex: 1; }
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+ .file-actions { display: flex; gap: 8px; flex-wrap: wrap; }
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+ .btn-secondary {
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+ background: rgba(30,36,48,0.06); color: var(--ink); padding: 8px 12px;
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+ border-radius: 10px; font-size: 12px; font-weight: 600;
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+ }
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+ .btn-download {
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+ background: var(--accent); color: white; padding: 8px 12px;
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+ border-radius: 10px; font-size: 12px; font-weight: 600; text-decoration: none;
135
+ }
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+ .section-note { font-size: 13px; color: var(--muted); margin-bottom: 14px; line-height: 1.6; }
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+ .advanced-toggle {
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+ margin-top: 18px; font-size: 13px; color: var(--accent); cursor: pointer; font-weight: 600;
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+ }
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+ .advanced-grid { display: none; margin-top: 12px; }
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+ .advanced-grid.open { display: grid; }
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+ .compare-summary {
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+ padding: 16px 18px; border-radius: 16px; background: rgba(15,118,110,0.08);
144
+ border: 1px solid rgba(15,118,110,0.18); margin-bottom: 18px; line-height: 1.7; font-size: 14px;
145
+ }
146
+ .modal-backdrop {
147
+ position: fixed; inset: 0; background: rgba(20,25,36,0.55); display: none;
148
+ align-items: center; justify-content: center; z-index: 1000; padding: 24px;
149
+ }
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+ .modal-backdrop.open { display: flex; }
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+ .modal-panel {
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+ width: min(960px, 100%); max-height: 85vh; overflow: auto; background: white;
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+ border-radius: 20px; padding: 22px; box-shadow: var(--shadow);
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+ }
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+ .modal-header { display: flex; justify-content: space-between; align-items: center; margin-bottom: 14px; }
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+ .modal-title { font-size: 18px; font-weight: 700; }
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+ .modal-close { background: rgba(30,36,48,0.08); color: var(--ink); padding: 8px 12px; border-radius: 10px; }
158
+ .preview-frame { width: 100%; min-height: 420px; border: 1px solid var(--line); border-radius: 12px; }
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+ .preview-image-shell { display: flex; justify-content: center; align-items: flex-start; padding: 8px; background: #f8fafc; border: 1px solid var(--line); border-radius: 12px; }
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+ .preview-image { display: block; max-width: 100%; height: auto; border-radius: 10px; }
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+ .preview-text { white-space: pre-wrap; font-size: 13px; line-height: 1.8; }
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+ .file-icon { font-size: 24px; margin-bottom: 6px; }
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+ .file-name { font-size: 12px; font-weight: 600; margin-bottom: 2px; word-break: break-all; }
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+ .file-meta { font-size: 11px; color: var(--muted); }
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+ .badge { display: inline-block; padding: 2px 8px; border-radius: 6px; font-size: 11px; font-weight: 600; }
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+ .badge-json { background: #e6f1fb; color: #185fa5; }
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+ .badge-md { background: #eaf3de; color: #3b6d11; }
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+ .badge-html { background: #faecda; color: #854f0b; }
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+ .badge-pdf { background: #fceebe; color: #b45309; }
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+ .badge-docx { background: #e1f5ee; color: #0f6e56; }
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+ .report-view {
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+ padding: 24px; border-radius: 18px; background: rgba(255,255,255,0.9);
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+ border: 1px solid var(--line); max-height: 600px; overflow: auto;
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+ font-size: 14px; line-height: 1.8;
175
+ }
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+ .report-view h1 { font-size: 22px; margin-bottom: 8px; }
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+ .report-view h2 { font-size: 18px; margin: 16px 0 8px; color: var(--accent); }
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+ .report-view h3 { font-size: 15px; margin: 12px 0 6px; }
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+ .report-view table { border-collapse: collapse; width: 100%; margin: 12px 0; }
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+ .report-view th, .report-view td { border: 1px solid var(--line); padding: 8px 12px; font-size: 13px; text-align: left; }
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+ .report-view th { background: rgba(15,118,110,0.08); font-weight: 600; }
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+ .empty-state { text-align: center; padding: 40px; color: var(--muted); }
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+ .empty-state .icon { font-size: 48px; margin-bottom: 12px; }
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+ .report-layout { display: grid; grid-template-columns: 220px 1fr; gap: 18px; }
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+ .report-nav { display: grid; gap: 8px; align-content: start; }
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+ .report-nav-btn {
187
+ text-align: left; padding: 12px 14px; border-radius: 14px; border: 1px solid var(--line);
188
+ background: rgba(255,255,255,0.7); color: var(--ink); font-size: 13px; font-weight: 600; cursor: pointer;
189
+ }
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+ .report-nav-btn small { display: block; margin-top: 4px; font-weight: 400; color: var(--muted); font-size: 11px; line-height: 1.4; }
191
+ .report-nav-btn.active { border-color: rgba(15,118,110,0.35); background: rgba(15,118,110,0.08); color: var(--accent); }
192
+ .report-nav-btn.missing { opacity: 0.45; cursor: not-allowed; }
193
+ .summary-cards { display: grid; grid-template-columns: repeat(auto-fill, minmax(140px, 1fr)); gap: 10px; margin-bottom: 16px; }
194
+ .summary-card { padding: 12px 14px; border-radius: 14px; background: rgba(15,118,110,0.06); border: 1px solid rgba(15,118,110,0.12); }
195
+ .summary-card .label { font-size: 11px; color: var(--muted); margin-bottom: 4px; }
196
+ .summary-card .value { font-size: 16px; font-weight: 700; }
197
+ .info-banner {
198
+ padding: 12px 14px; border-radius: 14px; background: rgba(217,119,6,0.08);
199
+ border: 1px solid rgba(217,119,6,0.18); font-size: 13px; line-height: 1.7; margin-bottom: 16px; color: var(--ink);
200
+ }
201
+ .readiness-grid { display: grid; grid-template-columns: repeat(auto-fit, minmax(250px, 1fr)); gap: 12px; }
202
+ .readiness-card {
203
+ padding: 16px; border-radius: 14px; border: 1px solid var(--line);
204
+ background: rgba(255,255,255,0.72); min-height: 184px;
205
+ display: flex; flex-direction: column; gap: 8px;
206
+ }
207
+ .readiness-card h3 { margin: 0; font-size: 14px; }
208
+ .readiness-card .value { font-size: 20px; font-weight: 800; letter-spacing: 0; }
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+ .readiness-card ul { margin: 4px 0 0; padding-left: 18px; color: var(--muted); font-size: 12px; line-height: 1.6; }
210
+ .readiness-top { display: flex; align-items: flex-start; justify-content: space-between; gap: 10px; }
211
+ .readiness-status {
212
+ flex: 0 0 auto; max-width: 120px; padding: 4px 8px; border-radius: 999px;
213
+ background: rgba(30,36,48,0.07); color: var(--muted);
214
+ font-size: 11px; font-weight: 700; line-height: 1.3; text-align: center;
215
+ }
216
+ .readiness-action {
217
+ margin-top: auto; padding-top: 8px; border-top: 1px solid rgba(30,36,48,0.08);
218
+ color: var(--ink); font-size: 12px; line-height: 1.5; font-weight: 600;
219
+ }
220
+ .memory-review-actions { display: flex; flex-wrap: wrap; gap: 6px; margin-top: 2px; }
221
+ .memory-review-actions .btn-secondary { padding: 6px 9px; border-radius: 8px; }
222
+ .memory-review-actions .btn-secondary.pass { background: rgba(21,128,61,0.1); color: var(--ok); }
223
+ .memory-review-actions .btn-secondary.warning { background: rgba(217,119,6,0.12); color: var(--warn); }
224
+ .memory-review-actions .btn-secondary.fail { background: rgba(185,28,28,0.1); color: var(--fail); }
225
+ .readiness-card.warning { border-color: rgba(217,119,6,0.32); background: rgba(217,119,6,0.07); }
226
+ .readiness-card.pass { border-color: rgba(21,128,61,0.24); background: rgba(21,128,61,0.06); }
227
+ .readiness-card.fail { border-color: rgba(185,28,28,0.32); background: rgba(185,28,28,0.07); }
228
+ .readiness-card.pending { border-color: rgba(148,163,184,0.34); background: rgba(148,163,184,0.08); }
229
+ .readiness-card.pass .readiness-status { background: rgba(21,128,61,0.1); color: var(--ok); }
230
+ .readiness-card.warning .readiness-status { background: rgba(217,119,6,0.12); color: var(--warn); }
231
+ .readiness-card.fail .readiness-status { background: rgba(185,28,28,0.1); color: var(--fail); }
232
+ .os-header { display: flex; align-items: flex-start; justify-content: space-between; gap: 18px; margin-bottom: 16px; }
233
+ .os-title-group h2 { margin-bottom: 6px; }
234
+ .os-score {
235
+ min-width: 132px; padding: 12px 14px; border-radius: 14px;
236
+ background: rgba(37,99,235,0.08); border: 1px solid rgba(37,99,235,0.16);
237
+ text-align: right;
238
+ }
239
+ .os-score .label { font-size: 11px; color: var(--muted); margin-bottom: 2px; }
240
+ .os-score .value { font-size: 26px; line-height: 1; font-weight: 800; }
241
+ .os-layout { display: grid; grid-template-columns: 0.95fr 1.05fr; gap: 12px; }
242
+ .os-card {
243
+ padding: 16px; border-radius: 14px; background: rgba(255,255,255,0.72);
244
+ border: 1px solid var(--line); min-height: 160px;
245
+ }
246
+ .os-card h3 { margin: 0 0 10px; font-size: 14px; }
247
+ .os-card.wide { grid-column: 1 / -1; }
248
+ .os-meta { display: flex; gap: 8px; flex-wrap: wrap; margin-bottom: 10px; }
249
+ .os-chip {
250
+ display: inline-flex; align-items: center; gap: 6px; padding: 5px 9px; border-radius: 999px;
251
+ background: rgba(30,36,48,0.07); color: var(--ink); font-size: 12px; font-weight: 700;
252
+ }
253
+ .os-chip.pass { background: rgba(21,128,61,0.1); color: var(--ok); }
254
+ .os-chip.warning { background: rgba(217,119,6,0.12); color: var(--warn); }
255
+ .os-chip.fail { background: rgba(185,28,28,0.1); color: var(--fail); }
256
+ .os-chip.pending { background: rgba(148,163,184,0.16); color: #475569; }
257
+ .os-list { display: grid; gap: 8px; margin: 0; padding: 0; list-style: none; }
258
+ .os-list li {
259
+ display: grid; gap: 3px; padding: 9px 10px; border-radius: 10px;
260
+ background: rgba(30,36,48,0.045); font-size: 12px; line-height: 1.45;
261
+ }
262
+ .os-list strong { font-size: 13px; }
263
+ .os-list small { color: var(--muted); line-height: 1.45; }
264
+ .os-template-grid { display: grid; grid-template-columns: repeat(auto-fit, minmax(210px, 1fr)); gap: 8px; }
265
+ .os-template {
266
+ display: grid; gap: 6px; padding: 10px 12px; border-radius: 10px;
267
+ background: rgba(30,36,48,0.045); border: 1px solid rgba(30,36,48,0.06);
268
+ }
269
+ .os-template strong { font-size: 13px; }
270
+ .json-summary { display: grid; grid-template-columns: repeat(auto-fill, minmax(160px, 1fr)); gap: 10px; margin-bottom: 14px; }
271
+ .json-summary-item { padding: 10px 12px; border-radius: 12px; background: rgba(37,99,235,0.06); border: 1px solid rgba(37,99,235,0.12); }
272
+ .json-summary-item .label { font-size: 11px; color: var(--muted); }
273
+ .json-summary-item .value { font-size: 14px; font-weight: 700; margin-top: 4px; word-break: break-word; }
274
+ .raw-toggle { font-size: 12px; color: var(--accent); cursor: pointer; font-weight: 600; margin: 8px 0; }
275
+ .raw-json { display: none; max-height: 360px; overflow: auto; background: #141924; color: #d9e0f0; padding: 14px; border-radius: 12px; font-size: 12px; }
276
+ .raw-json.open { display: block; }
277
+ .report-view code { background: rgba(30,36,48,0.06); padding: 2px 6px; border-radius: 6px; font-size: 12px; }
278
+ .report-view pre { background: #141924; color: #d9e0f0; padding: 14px; border-radius: 12px; overflow: auto; }
279
+ .report-view blockquote { margin: 12px 0; padding: 10px 14px; border-left: 4px solid var(--accent); background: rgba(15,118,110,0.06); color: var(--muted); }
280
+ @media (max-width: 1080px) { .hero, .grid, .report-layout, .readiness-grid, .os-layout { grid-template-columns: 1fr; } .form-grid { grid-template-columns: 1fr; } }
281
+ @media (max-width: 680px) { .os-header { flex-direction: column; } .os-score { width: 100%; text-align: left; } }
282
+ </style>
283
+ </head>
284
+ <body>
285
+ <div class="shell">
286
+ <section class="hero">
287
+ <div class="panel hero-card">
288
+ <div class="eyebrow">医学研究工作台</div>
289
+ <h1>靶点研究平台<br>研究者交付工作台</h1>
290
+ <div class="hero-copy">
291
+ 输入靶点与疾病后，查看四阶段分析、期刊论文草稿、事实核查、质量门禁和交付 ZIP。所有医学结论均需专家审阅，不能直接投稿。
292
+ </div>
293
+ <div class="status-row">
294
+ <div id="runStatusPill" class="status-pill idle">Idle</div>
295
+ <div id="currentStageText" class="status-pill idle">等待启动</div>
296
+ </div>
297
+ <div class="hero-meta">
298
+ <div><strong>Target:</strong> <span id="metaTarget">-</span></div>
299
+ <div><strong>Disease:</strong> <span id="metaDisease">-</span></div>
300
+ <div><strong>Run ID:</strong> <span id="metaRunId">-</span></div>
301
+ <div><strong>Updated:</strong> <span id="metaUpdated">-</span></div>
302
+ </div>
303
+ <div class="progress-track">
304
+ <div id="globalProgressFill" class="progress-fill"></div>
305
+ </div>
306
+ </div>
307
+ <aside class="panel hero-metrics">
308
+ <div class="metric">
309
+ <div class="metric-label">全局进度</div>
310
+ <div id="metricProgress" class="metric-value">0%</div>
311
+ </div>
312
+ <div class="metric">
313
+ <div class="metric-label">完成阶段</div>
314
+ <div id="metricCompleted" class="metric-value">0 / 4</div>
315
+ </div>
316
+ <div class="metric">
317
+ <div class="metric-label">研发成功率</div>
318
+ <div id="metricSuccessRate" class="metric-value">-</div>
319
+ </div>
320
+ <div class="metric">
321
+ <div class="metric-label">临床试验</div>
322
+ <div id="metricTrials" class="metric-value">-</div>
323
+ </div>
324
+ <div class="metric">
325
+ <div class="metric-label">论文质量</div>
326
+ <div id="metricManuscriptQuality" class="metric-value">-</div>
327
+ </div>
328
+ <div class="metric">
329
+ <div class="metric-label">事实核查</div>
330
+ <div id="metricFactCheck" class="metric-value">-</div>
331
+ </div>
332
+ <div class="metric">
333
+ <div class="metric-label">Delivery ZIP</div>
334
+ <div id="metricDeliveryPackage" class="metric-value">-</div>
335
+ </div>
336
+ </aside>
337
+ </section>
338
+
339
+ <section class="panel" style="margin-bottom: 22px;">
340
+ <div class="section">
341
+ <div class="os-header">
342
+ <div class="os-title-group">
343
+ <h2 id="medOsTitle">MedSCALE Research OS</h2>
344
+ <div id="medOsTagline" class="section-note">医学研究 Agent 协作、证据门禁、记忆沉淀和交付审计的研究者视图。</div>
345
+ </div>
346
+ <div class="os-score">
347
+ <div class="label">Readiness</div>
348
+ <div id="medOsScore" class="value">0</div>
349
+ </div>
350
+ </div>
351
+ <div id="medicalResearchOs" class="os-layout">
352
+ <div class="os-card wide"><div class="mini-note">正在加载医学研究 OS 状态...</div></div>
353
+ </div>
354
+ </div>
355
+ </section>
356
+
357
+ <section class="panel" style="margin-bottom: 22px;">
358
+ <div class="section">
359
+ <h2>交付就绪度</h2>
360
+ <div id="deliveryReadiness" class="readiness-grid">
361
+ <div class="readiness-card"><div class="value">等待交付</div><div class="mini-note">运行或打包论文后，这里会展示质量门禁、事实核查、证据富化和人工审阅待办。</div></div>
362
+ </div>
363
+ </div>
364
+ </section>
365
+
366
+ <section class="panel" style="margin-bottom: 22px;">
367
+ <div class="tab-bar">
368
+ <button class="tab-btn active" data-tab="workflow">流程监控</button>
369
+ <button class="tab-btn" data-tab="reports">汇报与论文</button>
370
+ <button class="tab-btn" data-tab="files">交付文件</button>
371
+ <button class="tab-btn" data-tab="compare">靶点对比</button>
372
+ </div>
373
+
374
+ <div id="tab-workflow" class="tab-content active">
375
+ <div class="grid" style="padding: 22px;">
376
+ <div>
377
+ <h2 style="margin-bottom:16px;">研究流程</h2>
378
+ <div id="stageList" class="workflow"></div>
379
+ </div>
380
+ <div>
381
+ <h2 style="margin-bottom:16px;">启动研究任务</h2>
382
+ <form id="runForm" class="run-form">
383
+ <div class="form-grid">
384
+ <label>靶点<input name="target" value="CDK4" required></label>
385
+ <label>疾病<input name="disease" value="breast cancer" required></label>
386
+ <label>癌种<input name="cancers" value="BRCA,LUAD" required></label>
387
+ <label>治疗模态<select name="modality"><option value="small_molecule">small_molecule</option><option value="antibody">antibody</option><option value="cell_therapy">cell_therapy</option><option value="gene_therapy">gene_therapy</option></select></label>
388
+ <label>风险等级<select name="risk_level"><option value="medium">medium</option><option value="low">low</option><option value="high">high</option></select></label>
389
+ </div>
390
+ <button id="runButton" class="primary" type="submit">运行完整研究流程</button>
391
+ <div id="formMessage" class="mini-note">将调用本地四阶段流程并生成论文交付，完成后可查看质量门禁、事实核查和 ZIP。</div>
392
+ </form>
393
+ <h2 style="margin: 22px 0 16px;">运行日志</h2>
394
+ <div id="logView" class="log-view">等待流程输出...</div>
395
+ </div>
396
+ </div>
397
+ </div>
398
+
399
+ <div id="tab-reports" class="tab-content">
400
+ <div class="section">
401
+ <h2>分析汇报与期刊论文</h2>
402
+ <div id="reportNote" class="info-banner">
403
+ 左侧导航包含<strong>四阶段分析汇报</strong>与<strong>期刊论文</strong>（中文 IMRaD + 嵌入图表 + 逐篇文献评述）。
404
+ 另提供<strong>《中华肿瘤杂志》格式草稿</strong>、医学事实核查报告和交付 ZIP；投稿前仍需作者、伦理、基金、原创实验和专家审校。
405
+ </div>
406
+ <div id="reportSummary" class="summary-cards"></div>
407
+ <div id="reportLayout" class="report-layout" style="display:none;">
408
+ <div id="reportNav" class="report-nav"></div>
409
+ <div id="reportContent" class="report-view"></div>
410
+ </div>
411
+ <div id="reportEmpty" class="empty-state">
412
+ <div class="icon">&#128196;</div>
413
+ <p>暂无可读汇报。请先运行一次完整分析，或点击下方刷新。</p>
414
+ <button id="reportRefresh" class="btn-secondary" type="button" style="margin-top:12px;">刷新汇报</button>
415
+ </div>
416
+ </div>
417
+ </div>
418
+
419
+ <div id="tab-files" class="tab-content">
420
+ <div class="section">
421
+ <h2>研究者交付文件</h2>
422
+ <div id="filesScopeNote" class="section-note">仅展示当前分析任务的核心交付物（报告、证据包、商业计划）。原始 JSON 与溯源文件收纳在「高级数据」中。</div>
423
+ <div id="fileGrid" class="file-grid"></div>
424
+ <div id="advancedToggle" class="advanced-toggle" style="display:none;">展开高级数据文件</div>
425
+ <div id="advancedGrid" class="file-grid advanced-grid"></div>
426
+ </div>
427
+ </div>
428
+
429
+ <div id="tab-compare" class="tab-content">
430
+ <div class="section">
431
+ <h2>靶点综合对比</h2>
432
+ <div id="compareContent">
433
+ <div class="empty-state"><div class="icon">&#128200;</div><p>完成分析后，将自动汇总表达、成药性、临床试验与商业指标</p></div>
434
+ </div>
435
+ </div>
436
+ </div>
437
+ </section>
438
+ </div>
439
+
440
+ <div id="previewModal" class="modal-backdrop">
441
+ <div class="modal-panel">
442
+ <div class="modal-header">
443
+ <div id="previewTitle" class="modal-title">文件预览</div>
444
+ <button id="previewClose" class="modal-close" type="button">关闭</button>
445
+ </div>
446
+ <div id="previewBody"></div>
447
+ </div>
448
+ </div>
449
+
450
+ <script src="https://cdnjs.cloudflare.com/ajax/libs/Chart.js/4.4.1/chart.umd.js"></script>
451
+ <script src="https://cdnjs.cloudflare.com/ajax/libs/marked/12.0.2/marked.min.js"></script>
452
+ <script type="module">
453
+ import { rewriteArtifactRelativeUrls } from './artifactPreview.js';
454
+
455
+ const stageOrder = ["stage1","stage2","stage3","stage4"];
456
+ const stageLabels = { stage1:"Stage 1 Expression", stage2:"Stage 2 Screening", stage3:"Stage 3 Deep Research", stage4:"Stage 4 Business" };
457
+ const stageListEl = document.getElementById("stageList");
458
+ const logViewEl = document.getElementById("logView");
459
+ const formMessageEl = document.getElementById("formMessage");
460
+ const runButtonEl = document.getElementById("runButton");
461
+
462
+ let currentStatus = null;
463
+ let reportBundle = null;
464
+ let activeReportSection = null;
465
+ let reviewActionInFlight = false;
466
+
467
+ if (window.marked) {
468
+ marked.setOptions({ breaks: true, gfm: true });
469
+ }
470
+
471
+ // Tab switching
472
+ document.querySelectorAll('.tab-btn').forEach(btn => {
473
+ btn.addEventListener('click', () => {
474
+ document.querySelectorAll('.tab-btn').forEach(b => b.classList.remove('active'));
475
+ document.querySelectorAll('.tab-content').forEach(c => c.classList.remove('active'));
476
+ btn.classList.add('active');
477
+ document.getElementById('tab-' + btn.dataset.tab).classList.add('active');
478
+ });
479
+ });
480
+
481
+ function metricChip(label, value) {
482
+ if (value === undefined || value === null || value === "") return "";
483
+ return '<div class="stage-metric"><strong>' + label + ':</strong> ' + value + '</div>';
484
+ }
485
+
486
+ function renderStages(status) {
487
+ const stages = status.stages || {};
488
+ stageListEl.innerHTML = stageOrder.map(key => {
489
+ const stage = stages[key] || {};
490
+ const metrics = stage.metrics || {};
491
+ const chips = [
492
+ metricChip("Status", stage.status || "pending"),
493
+ metricChip("Started", stage.started_at ? new Date(stage.started_at).toLocaleTimeString() : ""),
494
+ metricChip("Finished", stage.finished_at ? new Date(stage.finished_at).toLocaleTimeString() : ""),
495
+ metricChip("Confidence", metrics.confidence_level),
496
+ metricChip("Candidates", metrics.candidate_count),
497
+ metricChip("Rank", metrics.target_rank),
498
+ metricChip("Target score", metrics.target_score),
499
+ metricChip("Druggability", metrics.target_druggability),
500
+ metricChip("Trials", metrics.trial_count),
501
+ metricChip("Success", metrics.success_rate),
502
+ metricChip("Cost", metrics.total_cost),
503
+ metricChip("Duration", metrics.total_duration),
504
+ metricChip("Developability", metrics.developability_score),
505
+ ].filter(Boolean).join("");
506
+ const error = stage.error ? '<div class="mini-note" style="color:var(--fail);margin-top:10px;">' + stage.error + '</div>' : "";
507
+ return '<article class="stage-card ' + (stage.status || "pending") + '"><div class="stage-top"><div class="stage-name">' + (stage.label || stageLabels[key]) + '</div><div class="stage-status">' + (stage.status || "pending") + '</div></div><div class="stage-metrics">' + (chips || '<div class="stage-metric">Waiting...</div>') + '</div>' + error + '</article>';
508
+ }).join("");
509
+ }
510
+
511
+ function renderLogs(logs) {
512
+ if (!logs || !logs.length) { logViewEl.textContent = "等待流程输出..."; return; }
513
+ logViewEl.textContent = logs.map(e => {
514
+ const ts = e.timestamp ? new Date(e.timestamp).toLocaleTimeString() : "--:--:--";
515
+ return "[" + ts + "] " + e.level.toUpperCase() + " " + e.message;
516
+ }).join("\n");
517
+ logViewEl.scrollTop = logViewEl.scrollHeight;
518
+ }
519
+
520
+ function readinessCard(title, value, note, items, state) {
521
+ const list = items && items.length
522
+ ? '<ul>' + items.slice(0, 6).map(item => '<li>' + escapeHtml(item) + '</li>').join('') + '</ul>'
523
+ : '';
524
+ return '<article class="readiness-card ' + (state || '') + '">'
525
+ + '<h3>' + escapeHtml(title) + '</h3>'
526
+ + '<div class="value">' + escapeHtml(value) + '</div>'
527
+ + '<div class="mini-note">' + escapeHtml(note || '') + '</div>'
528
+ + list
529
+ + '</article>';
530
+ }
531
+
532
+ function researcherReadinessCard(card) {
533
+ const details = Array.isArray(card.details) ? card.details : [];
534
+ const list = details.length
535
+ ? '<ul>' + details.slice(0, 5).map(item => '<li>' + escapeHtml(item) + '</li>').join('') + '</ul>'
536
+ : '';
537
+ const state = card.state || 'pending';
538
+ const reviewStatus = card.review_status || '';
539
+ const reviewClass = reviewStatus === 'approved'
540
+ ? 'pass'
541
+ : reviewStatus === 'rejected'
542
+ ? 'fail'
543
+ : reviewStatus && reviewStatus !== 'pending'
544
+ ? 'warning'
545
+ : 'pending';
546
+ const reviewMeta = reviewStatus
547
+ ? '<div class="os-meta"><span class="os-chip ' + reviewClass + '">Memory review: ' + escapeHtml(reviewStatus) + '</span>'
548
+ + (card.reviewer ? '<span class="os-chip">reviewer ' + escapeHtml(card.reviewer) + '</span>' : '')
549
+ + '</div>'
550
+ : '';
551
+ const reviewActions = memoryReviewActions(card);
552
+ return '<article class="readiness-card ' + escapeHtml(state) + '">'
553
+ + '<div class="readiness-top"><h3>' + escapeHtml(card.title || '') + '</h3>'
554
+ + '<div class="readiness-status">' + escapeHtml(card.status_label || state) + '</div></div>'
555
+ + '<div class="value">' + escapeHtml(card.value || '-') + '</div>'
556
+ + reviewMeta
557
+ + '<div class="mini-note">' + escapeHtml(card.summary || '') + '</div>'
558
+ + list
559
+ + reviewActions
560
+ + '<div class="readiness-action">' + escapeHtml(card.next_action || '') + '</div>'
561
+ + '</article>';
562
+ }
563
+
564
+ function memoryReviewActions(card) {
565
+ if (card.id !== "learning_candidate" || !card.candidate_id) return "";
566
+ const actions = Array.isArray(card.review_actions) && card.review_actions.length
567
+ ? card.review_actions
568
+ : ["approve", "reject", "stale", "restore"];
569
+ const labels = { approve: "批准", reject: "拒绝", stale: "标记过期", restore: "恢复复审" };
570
+ const classes = { approve: "pass", reject: "fail", stale: "warning", restore: "warning" };
571
+ return '<div class="memory-review-actions">'
572
+ + actions.map(action => '<button type="button" class="btn-secondary ' + (classes[action] || '') + '" data-memory-review-action="' + escapeAttr(action) + '" data-candidate-id="' + escapeAttr(card.candidate_id) + '"' + (reviewActionInFlight ? ' disabled' : '') + '>' + escapeHtml(labels[action] || action) + '</button>').join('')
573
+ + '</div>';
574
+ }
575
+
576
+ function stateText(state) {
577
+ if (state === "pass") return "PASS";
578
+ if (state === "warning") return "REVIEW";
579
+ if (state === "fail") return "BLOCKED";
580
+ if (state === "pending") return "PENDING";
581
+ return state || "UNKNOWN";
582
+ }
583
+
584
+ function renderOsList(items, renderItem) {
585
+ return '<ul class="os-list">' + items.map(renderItem).join('') + '</ul>';
586
+ }
587
+
588
+ function renderMedicalResearchOs(status) {
589
+ const container = document.getElementById("medicalResearchOs");
590
+ if (!container) return;
591
+ const os = status.summary?.medical_research_os || {};
592
+ const product = os.product || {};
593
+ const operating = os.operating_model || {};
594
+ const loop = os.loop_readiness || {};
595
+ const team = os.research_team || {};
596
+ const memory = os.memory_strategy || {};
597
+ const tokenCost = os.token_cost || {};
598
+ const runtime = os.runtime_readiness || status.summary?.medical_runtime_readiness || {};
599
+ const promptStudio = os.prompt_studio || {};
600
+ const signals = Array.isArray(loop.signals) ? loop.signals : [];
601
+ const roles = Array.isArray(team.roles) ? team.roles : [];
602
+ const gates = Array.isArray(team.review_gates) ? team.review_gates : [];
603
+ const runtimeCards = Array.isArray(runtime.cards) ? runtime.cards : [];
604
+ const templates = Array.isArray(promptStudio.templates) ? promptStudio.templates : [];
605
+ const migrations = Array.isArray(os.next_migrations) ? os.next_migrations : [];
606
+ const tokenSummary = tokenCost.summary || {};
607
+ const tokenLanes = Array.isArray(tokenCost.by_medical_lane) ? tokenCost.by_medical_lane : [];
608
+ const titleEl = document.getElementById("medOsTitle");
609
+ const taglineEl = document.getElementById("medOsTagline");
610
+ const scoreEl = document.getElementById("medOsScore");
611
+ if (titleEl) titleEl.textContent = product.cn_name || product.name || "MedSCALE Research OS";
612
+ if (taglineEl) taglineEl.textContent = product.tagline || "医学研究 Agent 协作、证据门禁、记忆沉淀和交付审计的研究者视图。";
613
+ if (scoreEl) scoreEl.textContent = String(operating.readiness_score ?? loop.score ?? 0);
614
+
615
+ const signalHtml = signals.length
616
+ ? renderOsList(signals, signal => '<li><strong>' + escapeHtml(signal.label || signal.id || '') + '</strong><small><span class="os-chip ' + escapeHtml(signal.state || 'pending') + '">' + stateText(signal.state) + '</span> ' + escapeHtml(signal.summary || '') + '</small></li>')
617
+ : '<div class="mini-note">等待运行或交付状态。</div>';
618
+
619
+ const roleHtml = roles.length
620
+ ? renderOsList(roles, role => '<li><strong>' + escapeHtml(role.name || role.id || '') + '</strong><small>' + escapeHtml(role.responsibility || '') + ' · <span class="os-chip ' + escapeHtml(role.state || 'pending') + '">' + stateText(role.state) + '</span></small><small>' + escapeHtml(role.reason || '') + '</small></li>')
621
+ : '<div class="mini-note">等待协作角色计划。</div>';
622
+
623
+ const gateHtml = gates.length
624
+ ? renderOsList(gates.slice(0, 6), gate => '<li><strong>' + escapeHtml(gate.id || '') + '</strong><small>owner=' + escapeHtml(gate.owner || '') + ' · <span class="os-chip ' + escapeHtml(gate.state || 'pending') + '">' + stateText(gate.state) + '</span></small></li>')
625
+ : '<div class="mini-note">等待 review gate。</div>';
626
+
627
+ const templateHtml = templates.length
628
+ ? '<div class="os-template-grid">' + templates.map(template => '<div class="os-template"><strong>' + escapeHtml(template.title || template.id || '') + '</strong><div class="os-meta"><span class="os-chip">' + escapeHtml(template.phase || '') + '</span><span class="os-chip">' + escapeHtml(template.role || '') + '</span></div><div class="mini-note">' + escapeHtml(template.output || '') + '</div></div>').join('') + '</div>'
629
+ : '<div class="mini-note">等待医学 Prompt Studio 模板。</div>';
630
+
631
+ const migrationHtml = migrations.length
632
+ ? renderOsList(migrations.slice(0, 5), item => '<li><small>' + escapeHtml(item) + '</small></li>')
633
+ : '<div class="mini-note">暂无迁移待办。</div>';
634
+
635
+ const runtimeHtml = runtimeCards.length
636
+ ? renderOsList(runtimeCards, card => '<li><strong>' + escapeHtml(card.title || card.id || '') + '</strong><small><span class="os-chip ' + escapeHtml(card.state || 'pending') + '">' + stateText(card.state) + '</span> ' + escapeHtml(card.status_label || '') + '</small><small>' + escapeHtml(card.summary || '') + '</small><small>' + escapeHtml((card.details || []).slice(0, 3).join(' | ')) + '</small></li>')
637
+ : '<div class="mini-note">Waiting for MedSCALE runtime doctor.</div>';
638
+ const tokenCostValue = tokenSummary.estimated_cost_usd === null || tokenSummary.estimated_cost_usd === undefined
639
+ ? "unknown"
640
+ : "$" + Number(tokenSummary.estimated_cost_usd || 0).toFixed(6);
641
+ const tokenLaneHtml = tokenLanes.length
642
+ ? renderOsList(tokenLanes.slice(0, 6), lane => '<li><strong>' + escapeHtml(lane.label || lane.key || '') + '</strong><small>' + escapeHtml(String(lane.records || 0)) + ' record(s) · ' + escapeHtml(String(lane.total_tokens || 0)) + ' tokens</small></li>')
643
+ : '<div class="mini-note">No model usage recorded yet.</div>';
644
+ const memoryCandidateState = memory.candidate_state || 'review-required';
645
+ const memoryCandidateClass = memoryCandidateState === 'approved' || memoryCandidateState === 'promotable'
646
+ ? 'pass'
647
+ : memoryCandidateState === 'rejected'
648
+ ? 'fail'
649
+ : memoryCandidateState === 'pending'
650
+ ? 'pending'
651
+ : 'warning';
652
+
653
+ container.innerHTML =
654
+ '<article class="os-card"><h3>运行模式</h3><div class="os-meta">'
655
+ + '<span class="os-chip">' + escapeHtml(operating.mode || 'multi-agent') + '</span>'
656
+ + '<span class="os-chip ' + (operating.status === 'blocked' ? 'fail' : operating.status === 'ready-for-expert-review' ? 'pass' : 'warning') + '">' + escapeHtml(operating.status || 'insufficient-evidence') + '</span>'
657
+ + '<span class="os-chip">workflow ' + escapeHtml(product.source_upgrade || 'MedSCALE native workflow') + '</span>'
658
+ + '</div><div class="mini-note">ready=' + (operating.ready_signals ?? 0) + ' / warning=' + (operating.warning_signals ?? 0) + ' / missing=' + (operating.missing_signals ?? 0) + '</div>'
659
+ + '<div class="mini-note">runtime=' + escapeHtml(runtime.status || 'unknown') + ' / score=' + escapeHtml(String(runtime.score ?? '-')) + '</div></article>'
660
+ + '<article class="os-card"><h3>Agent Loop Readiness</h3>' + signalHtml + '</article>'
661
+ + '<article class="os-card"><h3>医学研究团队</h3>' + roleHtml + '</article>'
662
+ + '<article class="os-card"><h3>Review Gates</h3>' + gateHtml + '</article>'
663
+ + '<article class="os-card"><h3>Memory Strategy</h3><div class="os-meta">'
664
+ + '<span class="os-chip">' + escapeHtml(memory.routing || 'gbrain-only') + '</span>'
665
+ + '<span class="os-chip ' + (memory.seed_state === 'ready' ? 'pass' : 'pending') + '">' + escapeHtml(memory.seed_state || 'pending') + '</span>'
666
+ + '<span class="os-chip ' + memoryCandidateClass + '">' + escapeHtml(memoryCandidateState) + '</span>'
667
+ + '<span class="os-chip ' + (memory.review_ready ? 'pass' : 'pending') + '">review ' + escapeHtml(memory.review_status || 'pending') + '</span>'
668
+ + '</div><div class="mini-note">' + escapeHtml(memory.candidate_id || memory.record_path || '等待记忆播种与学习候选。') + '</div></article>'
669
+ + '<article class="os-card"><h3>Token / Cost</h3><div class="os-meta">'
670
+ + '<span class="os-chip ' + (tokenCost.status === 'ready' ? 'pass' : 'warning') + '">' + escapeHtml(tokenCost.status || 'pending') + '</span>'
671
+ + '<span class="os-chip">' + escapeHtml(String(tokenSummary.total_tokens || 0)) + ' tokens</span>'
672
+ + '<span class="os-chip">' + escapeHtml(String(tokenSummary.cache_savings_tokens || 0)) + ' saved</span>'
673
+ + '<span class="os-chip">' + escapeHtml(tokenCostValue) + '</span>'
674
+ + '</div>' + tokenLaneHtml + '</article>'
675
+ + '<article class="os-card"><h3>下一步迁移</h3>' + migrationHtml + '</article>'
676
+ + '<article class="os-card wide"><h3>Runtime Doctor</h3><div class="os-meta">'
677
+ + '<span class="os-chip ' + (runtime.status === 'ready' ? 'pass' : runtime.status === 'blocked' ? 'fail' : 'warning') + '">' + escapeHtml(runtime.status || 'unknown') + '</span>'
678
+ + '<span class="os-chip">score ' + escapeHtml(String(runtime.score ?? '-')) + '</span>'
679
+ + '<span class="os-chip">missing ' + escapeHtml(String((runtime.required_missing || []).length || 0)) + '</span>'
680
+ + '</div>' + runtimeHtml + '</article>'
681
+ + '<article class="os-card wide"><h3>医学 Prompt Studio</h3>' + templateHtml + '</article>';
682
+ }
683
+
684
+ function formatReviewExample(item) {
685
+ if (!item) return "";
686
+ const parts = [];
687
+ if (item.pmid) parts.push("PMID " + item.pmid);
688
+ if (item.study_design) parts.push(item.study_design);
689
+ if (item.source) parts.push(item.source);
690
+ if (item.evidence_level) parts.push(item.evidence_level);
691
+ return parts.join(" · ");
692
+ }
693
+
694
+ function renderDeliveryReadiness(status) {
695
+ const el = document.getElementById("deliveryReadiness");
696
+ if (!el) return;
697
+ const summary = status.summary || {};
698
+ const readiness = summary.delivery_readiness || {};
699
+ const quality = summary.quality_gate || {};
700
+ const fact = summary.fact_check || {};
701
+ const qualityFindings = readiness.quality_findings || [];
702
+ const evidence = readiness.literature_evidence || {};
703
+ const todo = readiness.human_review_todo || [];
704
+ const reviewExamples = readiness.review_examples || [];
705
+ const reviewFiles = readiness.review_files || {};
706
+ const packageAudit = readiness.package_audit || summary.package_audit || {};
707
+ const memorySeed = readiness.memory_seed || {};
708
+ const learningCandidate = readiness.learning_candidate || {};
709
+ const researcherCards = Array.isArray(readiness.researcher_cards) ? readiness.researcher_cards : [];
710
+ if (researcherCards.length) {
711
+ el.innerHTML = researcherCards.map(researcherReadinessCard).join("");
712
+ return;
713
+ }
714
+ const qualityVerdict = quality.passed === true ? "PASS" : quality.passed === false ? "FAIL" : "UNKNOWN";
715
+ const factVerdict = fact.passed === true ? "PASS" : fact.passed === false ? "FAIL" : "UNKNOWN";
716
+ const findingItems = qualityFindings.map(item => {
717
+ const severity = item.severity || "unknown";
718
+ const id = item.id || "quality";
719
+ const message = item.message || "";
720
+ return "[" + severity + "] " + id + ": " + message;
721
+ });
722
+ const sources = (evidence.sources || []).length ? evidence.sources.join(", ") : "none";
723
+ const evidenceItems = [
724
+ "reviews=" + (evidence.count ?? "-") + "; agent=" + (evidence.agent_cache_count ?? 0) + "; llm=" + (evidence.llm_count ?? 0) + "; rule=" + (evidence.rule_based_count ?? 0),
725
+ "sources=" + sources,
726
+ "MeSH=" + (evidence.mesh_count ?? 0) + "; citations=" + (evidence.citation_count_available ?? 0) + "; cache=" + (evidence.cache_used ? "used" : "not used"),
727
+ ];
728
+ const reviewItems = [
729
+ "Agent tasks=" + (reviewFiles.task_path ? "ready" : "missing") + "; cache=" + (reviewFiles.cache_path ? "ready" : "pending"),
730
+ ].concat(reviewExamples.map(formatReviewExample).filter(Boolean));
731
+ const packageItems = [
732
+ "entries=" + (packageAudit.entry_count ?? 0) + "; files checked=" + (packageAudit.files_checked ?? 0),
733
+ "README=" + (packageAudit.readme_present ? "ready" : "missing") + "; manifest=" + (packageAudit.manifest_present ? "ready" : "missing"),
734
+ "images checked=" + (packageAudit.image_refs_checked ?? 0) + "; links checked=" + (packageAudit.markdown_refs_checked ?? 0),
735
+ ];
736
+ (packageAudit.broken_image_refs || []).slice(0, 3).forEach(item => packageItems.push("broken image=" + (item.resolved_path || item.reference || "unknown")));
737
+ (packageAudit.broken_markdown_refs || []).slice(0, 3).forEach(item => packageItems.push("broken link=" + (item.resolved_path || item.reference || "unknown")));
738
+ const memoryWarnings = (memorySeed.warnings || []).slice(0, 4).map(item => "warning=" + item);
739
+ const memoryMissingRoles = memorySeed.missing_roles || [];
740
+ const memoryItems = [
741
+ "provider=" + (memorySeed.provider || "not seeded"),
742
+ "record=" + (memorySeed.record_ready ? "ready" : "missing") + "; summary=" + (memorySeed.summary_ready ? "ready" : "missing"),
743
+ "sources=" + (memorySeed.source_file_count ?? 0) + "; staged=" + (memorySeed.staged_file_count ?? 0),
744
+ "missing roles=" + (memoryMissingRoles.length ? memoryMissingRoles.join(", ") : "none"),
745
+ ].concat(memoryWarnings);
746
+ const qualityState = quality.passed === false ? "fail" : qualityFindings.length ? "warning" : quality.passed === true ? "pass" : "";
747
+ const factState = fact.passed === false ? "fail" : fact.passed === true ? "pass" : "";
748
+ const reviewState = evidence.upgrade_needed ? "warning" : (evidence.agent_or_llm_count ?? 0) > 0 ? "pass" : "";
749
+ const packageState = packageAudit.passed === false
750
+ ? "fail"
751
+ : packageAudit.passed === true
752
+ ? "pass"
753
+ : (packageAudit.entry_count || packageAudit.files_checked ? "warning" : "");
754
+ const packageValue = packageAudit.passed === true
755
+ ? "PASS"
756
+ : packageAudit.passed === false
757
+ ? "FAIL"
758
+ : "PENDING";
759
+ const packageNote = packageAudit.passed === true
760
+ ? "ZIP 内文件、README、manifest 以及 Markdown 本地图表引用已经通过自检。"
761
+ : packageAudit.passed === false
762
+ ? "交付 ZIP 已生成，但包内存在断链、缺失文件或归档不一致，需修复后再交付。"
763
+ : "尚未获得当前 ZIP 的归档审计结果。";
764
+ const memoryState = memorySeed.import_ok === false
765
+ ? "fail"
766
+ : memorySeed.import_ok === true
767
+ ? ((memorySeed.warnings || []).length || memoryMissingRoles.length ? "warning" : "pass")
768
+ : (memorySeed.record_ready || memorySeed.summary_ready ? "warning" : "");
769
+ const memoryValue = (memorySeed.provider || "memory") + " " + (
770
+ memorySeed.import_ok === true
771
+ ? "READY"
772
+ : memorySeed.import_ok === false
773
+ ? "FAILED"
774
+ : (memorySeed.record_ready || memorySeed.summary_ready ? "PARTIAL" : "PENDING")
775
+ );
776
+ const memoryNote = memorySeed.import_ok === true
777
+ ? "\u533b\u5b66\u4ea4\u4ed8\u6458\u8981\u5df2\u64ad\u79cd\u5230\u8bb0\u5fc6\u4f9b\u5e94\u5546\uff0c\u53ef\u7528\u4e8e\u540e\u7eed recall \u4e0e\u7814\u7a76\u8fde\u7eed\u6027\u3002"
778
+ : (memorySeed.record_ready || memorySeed.summary_ready)
779
+ ? "\u5df2\u751f\u6210\u672c\u5730 memory seed \u4ea4\u4ed8\u7269\uff0c\u4f46\u5bfc\u5165\u8fd8\u9700\u590d\u6838\u6216\u8865\u8dd1\u3002"
780
+ : "\u5c1a\u672a\u4e3a\u5f53\u524d\u4ea4\u4ed8\u751f\u6210 memory seed \u8bb0\u5f55\u3002";
781
+ const learningWarnings = (learningCandidate.warnings || []).slice(0, 4).map(item => "warning=" + item);
782
+ const learningReviewStatus = learningCandidate.review_status || "pending";
783
+ const learningItems = [
784
+ "candidate=" + (learningCandidate.candidate_id || "missing"),
785
+ "record=" + (learningCandidate.record_ready ? "ready" : "missing") + "; summary=" + (learningCandidate.summary_ready ? "ready" : "missing"),
786
+ "recommended=" + (learningCandidate.recommended_action || "pending"),
787
+ "review=" + (learningCandidate.review_ready ? "ready" : "pending") + "; status=" + learningReviewStatus,
788
+ "brain=" + (
789
+ learningCandidate.brain_ingest_ok === true
790
+ ? "candidate-node-ready"
791
+ : learningCandidate.brain_ingest_ok === false
792
+ ? "ingest-failed"
793
+ : "not-ingested"
794
+ ),
795
+ ].concat(learningWarnings);
796
+ const learningState = learningCandidate.brain_ingest_ok === false
797
+ ? "fail"
798
+ : learningReviewStatus === "approved"
799
+ ? "pass"
800
+ : learningReviewStatus === "rejected"
801
+ ? "fail"
802
+ : learningReviewStatus === "stale" || learningReviewStatus === "restored"
803
+ ? "warning"
804
+ : learningCandidate.promotable
805
+ ? "pass"
806
+ : learningCandidate.record_ready || learningCandidate.summary_ready
807
+ ? "warning"
808
+ : "";
809
+ const learningValue = learningReviewStatus === "approved"
810
+ ? "APPROVED"
811
+ : learningReviewStatus === "rejected"
812
+ ? "REJECTED"
813
+ : learningReviewStatus === "stale"
814
+ ? "STALE"
815
+ : learningReviewStatus === "restored"
816
+ ? "RESTORED"
817
+ : learningCandidate.promotable
818
+ ? "READY"
819
+ : learningCandidate.recommended_action === "resolve-failures-first"
820
+ ? "BLOCKED"
821
+ : learningCandidate.record_ready || learningCandidate.summary_ready
822
+ ? "REVIEW"
823
+ : "PENDING";
824
+ const learningNote = learningReviewStatus === "approved"
825
+ ? "learning candidate 已通过 Memory Brain 人工审核，可进入后续医学研究 recall 与复用。"
826
+ : learningReviewStatus === "rejected"
827
+ ? "learning candidate 已被拒绝，不应进入长期知识或后续 recall。"
828
+ : learningReviewStatus === "stale"
829
+ ? "learning candidate 已被标记为 stale，需要更新证据后再复用。"
830
+ : learningReviewStatus === "restored"
831
+ ? "learning candidate 已恢复复审，等待下一轮人工批准。"
832
+ : learningCandidate.promotable
833
+ ? "\u533b\u5b66\u4ea4\u4ed8\u5df2\u6c89\u6dc0\u4e3a\u53ef\u5ba1\u9605 learning candidate\uff0c\u53ef\u7ee7\u7eed\u63a8\u8fdb\u5230 Memory Brain \u6216\u77e5\u8bc6\u5e93\u4eba\u5de5\u590d\u5ba1\u6d41\u7a0b\u3002"
834
+ : learningCandidate.recommended_action === "resolve-failures-first"
835
+ ? "\u5f53\u524d\u4ea4\u4ed8\u8fd8\u6709\u672a\u89e3\u51b3\u8d28\u91cf/\u4e8b\u5b9e\u95ee\u9898\uff0c\u5e94\u5148\u4fee\u590d\u540e\u518d\u63a8\u8fdb\u957f\u671f\u77e5\u8bc6\u6c89\u6dc0\u3002"
836
+ : learningCandidate.record_ready || learningCandidate.summary_ready
837
+ ? "\u5df2\u751f\u6210 learning candidate\uff0c\u4f46\u8fd8\u9700\u8865\u5145\u8bc1\u636e\u6216\u4eba\u5de5\u5ba1\u9605\u540e\u624d\u9002\u5408\u63a8\u8fdb\u3002"
838
+ : "\u5c1a\u672a\u4e3a\u5f53\u524d\u4ea4\u4ed8\u751f\u6210 learning candidate \u8bb0\u5f55\u3002";
839
+ const readinessCards = [
840
+ readinessCard("\u8d28\u91cf\u95e8\u7981", qualityVerdict + " " + (quality.grade || "") + " " + (quality.score ?? "-"), (quality.errors ?? 0) + " errors / " + (quality.warnings ?? 0) + " warnings", findingItems, qualityState),
841
+ readinessCard("\u4e8b\u5b9e\u6838\u67e5", factVerdict + " " + (fact.score ?? "-"), (fact.errors ?? 0) + " errors / " + (fact.warnings ?? 0) + " warnings; unverified=" + ((fact.unverified_claims || []).length ?? 0), [], factState),
842
+ readinessCard("\u6587\u732e\u8bc4\u8ff0\u6765\u6e90", "agent " + (evidence.agent_cache_count ?? 0) + " / llm " + (evidence.llm_count ?? 0) + " / rule " + (evidence.rule_based_count ?? 0), evidence.upgrade_needed ? "\u5f53\u524d\u4ecd\u542b\u89c4\u5219\u56de\u9000\u8bc4\u8ff0\uff0c\u5efa\u8bae\u8fd0\u884c Agent/LLM \u5347\u7ea7\u3002" : "\u5df2\u5177\u5907 Agent/LLM \u6df1\u5ea6\u8bc4\u8ff0\u4fe1\u53f7\u3002", reviewItems, reviewState),
843
+ readinessCard("ZIP 自检", packageValue, packageNote, packageItems, packageState),
844
+ readinessCard("\u8bb0\u5fc6\u64ad\u79cd", memoryValue, memoryNote, memoryItems, memoryState),
845
+ readinessCard("\u5b66\u4e60\u6c89\u6dc0", learningValue, learningNote, learningItems, learningState),
846
+ readinessCard("\u8bc1\u636e\u4e0e\u4e0b\u4e00\u6b65\u5ba1\u9605", sources, "\u6587\u732e\u5bcc\u5316\u72b6\u6001\u4e0e\u5fc5\u8981\u4eba\u5de5\u5ba1\u9605\u4e8b\u9879", evidenceItems.concat(todo), todo.length ? "warning" : "pass"),
847
+ ];
848
+ el.innerHTML = readinessCards.join("");
849
+ }
850
+
851
+ function renderStatus(status) {
852
+ currentStatus = status;
853
+ const runStatus = status.status || "idle";
854
+ const completedCount = Object.values(status.stages || {}).filter(s => s.status === "completed").length;
855
+ const s4 = status.stages?.stage4?.metrics || {};
856
+ const s3 = status.stages?.stage3?.metrics || {};
857
+ document.getElementById("runStatusPill").className = "status-pill " + runStatus;
858
+ document.getElementById("runStatusPill").textContent = runStatus;
859
+ document.getElementById("currentStageText").className = "status-pill " + runStatus;
860
+ document.getElementById("currentStageText").textContent = status.current_stage_label || "\u7b49\u5f85\u542f\u52a8";
861
+ document.getElementById("metaTarget").textContent = status.target || "-";
862
+ document.getElementById("metaDisease").textContent = status.disease || "-";
863
+ document.getElementById("metaRunId").textContent = status.run_id || "-";
864
+ document.getElementById("metaUpdated").textContent = status.updated_at ? new Date(status.updated_at).toLocaleString() : "-";
865
+ document.getElementById("metricProgress").textContent = (status.progress_percent || 0) + "%";
866
+ document.getElementById("metricCompleted").textContent = completedCount + " / 4";
867
+ document.getElementById("metricSuccessRate").textContent = s4.success_rate || "-";
868
+ document.getElementById("metricTrials").textContent = s3.trial_count || "-";
869
+ const manuscriptQuality = status.summary?.quality_gate || null;
870
+ const qualityVerdict = manuscriptQuality?.passed === true
871
+ ? "PASS"
872
+ : manuscriptQuality?.passed === false
873
+ ? "FAIL"
874
+ : "UNKNOWN";
875
+ const qualityText = manuscriptQuality
876
+ ? qualityVerdict + " " + (manuscriptQuality.score ?? "-")
877
+ : "-";
878
+ const qualityMetricEl = document.getElementById("metricManuscriptQuality");
879
+ if (qualityMetricEl) qualityMetricEl.textContent = qualityText;
880
+ const factCheck = status.summary?.fact_check || null;
881
+ const factVerdict = factCheck?.passed === true
882
+ ? "PASS"
883
+ : factCheck?.passed === false
884
+ ? "FAIL"
885
+ : "UNKNOWN";
886
+ const factText = factCheck
887
+ ? factVerdict + " " + (factCheck.score ?? "-")
888
+ : "-";
889
+ const factMetricEl = document.getElementById("metricFactCheck");
890
+ if (factMetricEl) factMetricEl.textContent = factText;
891
+ const packageReady = Boolean(status.artifacts?.delivery_package || status.summary?.delivery_package);
892
+ const packageAudit = status.summary?.package_audit || {};
893
+ const packageMetricEl = document.getElementById("metricDeliveryPackage");
894
+ if (packageMetricEl) packageMetricEl.textContent = !packageReady
895
+ ? "-"
896
+ : packageAudit?.passed === true
897
+ ? "PASS"
898
+ : packageAudit?.passed === false
899
+ ? "FAIL"
900
+ : "READY";
901
+ document.getElementById("globalProgressFill").style.width = (status.progress_percent || 0) + "%";
902
+ renderMedicalResearchOs(status);
903
+ renderDeliveryReadiness(status);
904
+ renderStages(status);
905
+ renderLogs(status.logs || []);
906
+ runButtonEl.disabled = runStatus === "running";
907
+ if (runStatus === "completed") {
908
+ loadFiles();
909
+ }
910
+ }
911
+
912
+ function renderReportSummary(cards) {
913
+ const el = document.getElementById("reportSummary");
914
+ if (!cards || !cards.length) { el.innerHTML = ""; return; }
915
+ el.innerHTML = cards.map(card =>
916
+ '<div class="summary-card"><div class="label">' + escapeHtml(card.label) + '</div><div class="value">' + escapeHtml(card.value) + '</div></div>'
917
+ ).join("");
918
+ }
919
+
920
+ function renderReportNav(sections) {
921
+ const nav = document.getElementById("reportNav");
922
+ nav.innerHTML = sections.map(section => {
923
+ const missing = !section.path;
924
+ const cls = "report-nav-btn" + (activeReportSection === section.id ? " active" : "") + (missing ? " missing" : "");
925
+ return '<button type="button" class="' + cls + '" data-section="' + section.id + '" ' + (missing ? 'disabled' : '') + '>'
926
+ + escapeHtml(section.title_zh)
927
+ + '<small>' + escapeHtml(section.subtitle_zh || "") + '</small></button>';
928
+ }).join("");
929
+ nav.querySelectorAll(".report-nav-btn:not(.missing)").forEach(btn => {
930
+ btn.addEventListener("click", () => showReportSection(btn.dataset.section));
931
+ });
932
+ }
933
+
934
+ async function showReportSection(sectionId) {
935
+ if (!reportBundle) return;
936
+ const section = (reportBundle.sections || []).find(s => s.id === sectionId);
937
+ if (!section || !section.path) return;
938
+ activeReportSection = sectionId;
939
+ renderReportNav(reportBundle.sections || []);
940
+ const reportEl = document.getElementById("reportContent");
941
+ reportEl.innerHTML = '<div class="preview-text">加载中...</div>';
942
+ try {
943
+ if (section.kind === "html") {
944
+ reportEl.innerHTML = '<iframe class="preview-frame" style="min-height:560px;" src="/api/download?inline=1&path=' + encodeURIComponent(section.path) + '"></iframe>';
945
+ return;
946
+ }
947
+ const resp = await fetch("/api/artifact?path=" + encodeURIComponent(section.path));
948
+ if (!resp.ok) throw new Error("无法读取汇报文件");
949
+ const text = await resp.text();
950
+ if (window.marked) {
951
+ renderMarkdownInto(reportEl, text, section.path);
952
+ } else {
953
+ reportEl.innerHTML = '<div class="preview-text">' + escapeHtml(text) + '</div>';
954
+ }
955
+ } catch (error) {
956
+ reportEl.innerHTML = '<div class="preview-text" style="color:var(--fail);">加载失败：' + escapeHtml(error.message) + '</div>';
957
+ }
958
+ }
959
+
960
+ async function loadReports() {
961
+ const layout = document.getElementById("reportLayout");
962
+ const empty = document.getElementById("reportEmpty");
963
+ try {
964
+ const resp = await fetch("/api/reports");
965
+ if (!resp.ok) throw new Error("无法加载汇报");
966
+ reportBundle = await resp.json();
967
+ if (!reportBundle.available) {
968
+ layout.style.display = "none";
969
+ empty.style.display = "block";
970
+ renderReportSummary([]);
971
+ return;
972
+ }
973
+ empty.style.display = "none";
974
+ layout.style.display = "grid";
975
+ renderReportSummary(reportBundle.summary_cards || []);
976
+ const first = (reportBundle.sections || []).find(s => s.path && s.id === "manuscript")
977
+ || (reportBundle.sections || []).find(s => s.path);
978
+ activeReportSection = first ? first.id : null;
979
+ renderReportNav(reportBundle.sections || []);
980
+ if (first) await showReportSection(first.id);
981
+ } catch (error) {
982
+ layout.style.display = "none";
983
+ empty.style.display = "block";
984
+ empty.querySelector("p").textContent = "加载汇报失败：" + error.message;
985
+ }
986
+ }
987
+
988
+ function escapeHtml(text) {
989
+ return String(text).replace(/&/g,'&amp;').replace(/</g,'&lt;').replace(/>/g,'&gt;');
990
+ }
991
+
992
+ function escapeAttr(text) {
993
+ return escapeHtml(text).replace(/"/g,'&quot;').replace(/'/g,'&#39;');
994
+ }
995
+
996
+ function renderMarkdownInto(container, markdown, artifactPath) {
997
+ if (!window.marked) {
998
+ container.innerHTML = '<div class="preview-text">' + escapeHtml(markdown) + '</div>';
999
+ return;
1000
+ }
1001
+ container.innerHTML = marked.parse(markdown);
1002
+ rewriteArtifactRelativeUrls(container, artifactPath);
1003
+ }
1004
+
1005
+ function formatMetricValue(value, format) {
1006
+ if (value === undefined || value === null || value === "") return "—";
1007
+ if (format === "percent") return (Number(value) * 100).toFixed(2) + "%";
1008
+ if (format === "score") return Number(value).toFixed(3);
1009
+ if (format === "money") return "$" + Number(value).toFixed(1) + "M";
1010
+ if (format === "months") return Number(value) + " 个月";
1011
+ if (format === "bool") return value ? "是" : "否";
1012
+ if (format === "rank") return "第 " + value + " 名";
1013
+ if (format === "phase") return "Phase " + value;
1014
+ return String(value);
1015
+ }
1016
+
1017
+ function renderFileCard(item) {
1018
+ const sizeKB = (item.size / 1024).toFixed(1);
1019
+ const badgeCls = {".json":"badge-json",".md":"badge-md",".html":"badge-html",".pdf":"badge-pdf",".docx":"badge-docx"}[item.suffix] || "";
1020
+ const previewBtn = item.previewable
1021
+ ? '<button class="btn-secondary" type="button" data-action="preview" data-path="' + escapeHtml(item.path) + '" data-title="' + escapeHtml(item.title_zh) + '">预览</button>'
1022
+ : '';
1023
+ return '<article class="file-card">'
1024
+ + '<div><span class="badge ' + badgeCls + '">' + escapeHtml(item.category_label || item.category || '') + '</span></div>'
1025
+ + '<div class="file-title">' + escapeHtml(item.title_zh || item.filename) + '</div>'
1026
+ + '<div class="file-desc">' + escapeHtml(item.description_zh || '') + '</div>'
1027
+ + '<div class="file-meta">' + sizeKB + ' KB · ' + escapeHtml(item.filename) + '</div>'
1028
+ + '<div class="file-actions">' + previewBtn
1029
+ + '<a class="btn-download" href="/api/download?path=' + encodeURIComponent(item.path) + '">下载</a></div>'
1030
+ + '</article>';
1031
+ }
1032
+
1033
+ // Files tab
1034
+ async function loadFiles() {
1035
+ const fileGrid = document.getElementById("fileGrid");
1036
+ const advancedGrid = document.getElementById("advancedGrid");
1037
+ const advancedToggle = document.getElementById("advancedToggle");
1038
+ try {
1039
+ const resp = await fetch("/api/artifacts");
1040
+ if (!resp.ok) { fileGrid.innerHTML = '<div class="empty-state"><p>无法获取文件列表</p></div>'; return; }
1041
+ const data = await resp.json();
1042
+ const deliverables = data.deliverables || [];
1043
+ const advanced = data.advanced || [];
1044
+ const scopeNote = document.getElementById("filesScopeNote");
1045
+ if (data.current_target) {
1046
+ scopeNote.textContent = "当前任务：" + data.current_target + " / " + (data.current_disease || "—") + "。以下仅展示该任务的核心交付物。";
1047
+ }
1048
+ if (!deliverables.length) {
1049
+ fileGrid.innerHTML = '<div class="empty-state"><div class="icon">&#128193;</div><p>暂无交付文件，请先完成一次完整分析</p></div>';
1050
+ } else {
1051
+ fileGrid.innerHTML = deliverables.map(renderFileCard).join("");
1052
+ }
1053
+ if (advanced.length) {
1054
+ advancedToggle.style.display = "block";
1055
+ advancedToggle.textContent = advancedGrid.classList.contains("open") ? "收起高级数据文件" : "展开高级数据文件（" + advanced.length + "）";
1056
+ advancedGrid.innerHTML = advanced.map(renderFileCard).join("");
1057
+ } else {
1058
+ advancedToggle.style.display = "none";
1059
+ advancedGrid.innerHTML = "";
1060
+ }
1061
+ bindFileActions();
1062
+ } catch(e) {
1063
+ fileGrid.innerHTML = '<div class="empty-state"><p>加载文件列表失败</p></div>';
1064
+ }
1065
+ }
1066
+
1067
+ function bindFileActions() {
1068
+ document.querySelectorAll('[data-action="preview"]').forEach(btn => {
1069
+ btn.addEventListener('click', () => previewFile(btn.dataset.path, btn.dataset.title));
1070
+ });
1071
+ }
1072
+
1073
+ function renderJsonSummary(rows) {
1074
+ if (!rows || !rows.length) return "";
1075
+ return '<div class="json-summary">' + rows.map(row =>
1076
+ '<div class="json-summary-item"><div class="label">' + escapeHtml(row.label) + '</div><div class="value">' + escapeHtml(row.value) + '</div></div>'
1077
+ ).join("") + '</div>';
1078
+ }
1079
+
1080
+ async function previewFile(path, title) {
1081
+ const modal = document.getElementById("previewModal");
1082
+ const body = document.getElementById("previewBody");
1083
+ document.getElementById("previewTitle").textContent = title || "文件预览";
1084
+ body.innerHTML = '<div class="preview-text">加载中...</div>';
1085
+ modal.classList.add("open");
1086
+ try {
1087
+ const suffix = path.split('.').pop().toLowerCase();
1088
+ if (["html", "pdf"].includes(suffix)) {
1089
+ body.innerHTML = '<iframe class="preview-frame" src="/api/download?inline=1&path=' + encodeURIComponent(path) + '"></iframe>';
1090
+ return;
1091
+ }
1092
+ if (["png", "svg", "jpg", "jpeg", "gif", "webp"].includes(suffix)) {
1093
+ body.innerHTML = '<div class="preview-image-shell"><img class="preview-image" alt="' + escapeHtml(title || path.split('/').pop() || 'preview') + '" src="/api/download?inline=1&path=' + encodeURIComponent(path) + '"></div>';
1094
+ return;
1095
+ }
1096
+ const resp = await fetch("/api/artifact?path=" + encodeURIComponent(path));
1097
+ if (!resp.ok) throw new Error("无法读取文件");
1098
+ const text = await resp.text();
1099
+ if (suffix === "json") {
1100
+ const parsed = JSON.parse(text);
1101
+ const pretty = JSON.stringify(parsed, null, 2);
1102
+ let summaryHtml = "";
1103
+ try {
1104
+ const sumResp = await fetch("/api/preview-summary?path=" + encodeURIComponent(path));
1105
+ if (sumResp.ok) {
1106
+ const sumData = await sumResp.json();
1107
+ summaryHtml = renderJsonSummary(sumData.rows || []);
1108
+ }
1109
+ } catch (_) {}
1110
+ body.innerHTML = summaryHtml
1111
+ + '<div class="raw-toggle" data-toggle="raw">展开原始 JSON</div>'
1112
+ + '<pre class="raw-json" id="rawJsonBlock">' + escapeHtml(pretty) + '</pre>';
1113
+ body.querySelector("[data-toggle='raw']").addEventListener("click", (e) => {
1114
+ const block = document.getElementById("rawJsonBlock");
1115
+ const open = block.classList.toggle("open");
1116
+ e.target.textContent = open ? "收起原始 JSON" : "展开原始 JSON";
1117
+ });
1118
+ return;
1119
+ }
1120
+ if (suffix === "md" && window.marked) {
1121
+ body.innerHTML = '<div class="report-view"></div>';
1122
+ renderMarkdownInto(body.querySelector(".report-view"), text, path);
1123
+ return;
1124
+ }
1125
+ body.innerHTML = '<div class="preview-text">' + escapeHtml(text) + '</div>';
1126
+ } catch (error) {
1127
+ body.innerHTML = '<div class="preview-text" style="color:var(--fail);">预览失败：' + escapeHtml(error.message) + '</div>';
1128
+ }
1129
+ }
1130
+
1131
+ document.getElementById("previewClose").addEventListener("click", () => {
1132
+ document.getElementById("previewModal").classList.remove("open");
1133
+ document.getElementById("previewBody").innerHTML = "";
1134
+ });
1135
+ document.getElementById("previewModal").addEventListener("click", event => {
1136
+ if (event.target.id === "previewModal") {
1137
+ document.getElementById("previewModal").classList.remove("open");
1138
+ }
1139
+ });
1140
+ document.getElementById("advancedToggle").addEventListener("click", () => {
1141
+ const grid = document.getElementById("advancedGrid");
1142
+ const toggle = document.getElementById("advancedToggle");
1143
+ grid.classList.toggle("open");
1144
+ toggle.textContent = grid.classList.contains("open")
1145
+ ? "收起高级数据文件"
1146
+ : "展开高级数据文件（" + grid.children.length + "）";
1147
+ });
1148
+
1149
+ let compareChartInstance = null;
1150
+
1151
+ // Compare tab
1152
+ async function loadComparison() {
1153
+ const el = document.getElementById("compareContent");
1154
+ try {
1155
+ const resp = await fetch("/api/compare");
1156
+ if (!resp.ok) throw new Error("无法加载对比数据");
1157
+ const data = await resp.json();
1158
+ const profiles = data.profiles || [];
1159
+ if (!profiles.length) {
1160
+ el.innerHTML = '<div class="empty-state"><div class="icon">&#128200;</div><p>暂无可对比靶点，请先完成分析</p></div>';
1161
+ return;
1162
+ }
1163
+
1164
+ let html = '<div class="compare-summary">' + escapeHtml(data.recommendation || "") + '</div>';
1165
+ html += '<table><tr><th>对比指标</th>';
1166
+ profiles.forEach(p => html += '<th>' + escapeHtml(p.target) + '<br><span style="font-weight:400;color:var(--muted);font-size:12px;">' + escapeHtml(p.disease) + '</span></th>');
1167
+ html += '</tr>';
1168
+
1169
+ (data.rows || []).forEach(row => {
1170
+ html += '<tr><td>' + escapeHtml(row.label_zh) + '</td>';
1171
+ profiles.forEach(profile => {
1172
+ const bucket = profile.metrics[row.stage] || {};
1173
+ html += '<td>' + formatMetricValue(bucket[row.key], row.format) + '</td>';
1174
+ });
1175
+ html += '</tr>';
1176
+ });
1177
+ html += '</table>';
1178
+
1179
+ if (profiles.length >= 2) {
1180
+ html += '<h3 style="margin-top:20px;">成药性 vs 整体成功率</h3><div class="chart-container"><canvas id="compareChart"></canvas></div>';
1181
+ }
1182
+ el.innerHTML = html;
1183
+
1184
+ if (profiles.length >= 2 && window.Chart) {
1185
+ if (compareChartInstance) compareChartInstance.destroy();
1186
+ const labels = profiles.map(p => p.target + " / " + p.disease);
1187
+ const drugScores = profiles.map(p => Number((p.metrics.stage2 || {}).target_druggability || (p.metrics.stage4 || {}).druggability_score || 0));
1188
+ const successRates = profiles.map(p => Number((p.metrics.stage4 || {}).overall_success_rate || 0) * 100);
1189
+ compareChartInstance = new Chart(document.getElementById('compareChart'), {
1190
+ type: 'bar',
1191
+ data: {
1192
+ labels,
1193
+ datasets: [
1194
+ { label: '成药性评分', data: drugScores, backgroundColor: '#0f766e', borderRadius: 4 },
1195
+ { label: '整体成功率(%)', data: successRates, backgroundColor: '#d97706', borderRadius: 4 },
1196
+ ]
1197
+ },
1198
+ options: {
1199
+ responsive: true, maintainAspectRatio: false,
1200
+ plugins: { legend: { position: 'top' } },
1201
+ scales: { y: { beginAtZero: true } }
1202
+ }
1203
+ });
1204
+ }
1205
+ } catch (error) {
1206
+ el.innerHTML = '<div class="empty-state"><p>加载对比数据失败：' + escapeHtml(error.message) + '</p></div>';
1207
+ }
1208
+ }
1209
+
1210
+ // Fetch status
1211
+ async function fetchStatus() {
1212
+ try {
1213
+ const response = await fetch("/api/status");
1214
+ const data = await response.json();
1215
+ renderStatus(data);
1216
+ } catch (error) {
1217
+ formMessageEl.textContent = "Status fetch failed: " + error.message;
1218
+ }
1219
+ }
1220
+
1221
+ // Run form
1222
+ document.getElementById("runForm").addEventListener("submit", async event => {
1223
+ event.preventDefault();
1224
+ const formData = new FormData(event.target);
1225
+ const payload = Object.fromEntries(formData.entries());
1226
+ formMessageEl.textContent = "Starting local pipeline...";
1227
+ try {
1228
+ const response = await fetch("/api/run", { method: "POST", headers: {"Content-Type":"application/json"}, body: JSON.stringify(payload) });
1229
+ const data = await response.json();
1230
+ if (!response.ok || !data.ok) { formMessageEl.textContent = data.error || "Unable to start pipeline."; return; }
1231
+ formMessageEl.textContent = "Pipeline started. Run ID: " + data.run_id;
1232
+ fetchStatus();
1233
+ } catch (error) { formMessageEl.textContent = "Start failed: " + error.message; }
1234
+ });
1235
+
1236
+ async function submitMemoryReviewAction(button) {
1237
+ const action = button.dataset.memoryReviewAction || "";
1238
+ const candidateId = button.dataset.candidateId || "";
1239
+ const reasonDefaults = {
1240
+ approve: "quality/fact/package evidence reviewed",
1241
+ reject: "insufficient or unsafe evidence",
1242
+ stale: "newer evidence may supersede this candidate",
1243
+ restore: "fresh evidence added for renewed review",
1244
+ };
1245
+ const reason = window.prompt("Memory review reason: " + action, reasonDefaults[action] || "");
1246
+ if (reason === null) return;
1247
+ reviewActionInFlight = true;
1248
+ formMessageEl.textContent = "Submitting Memory Brain review: " + action + " / " + candidateId;
1249
+ fetchStatus();
1250
+ try {
1251
+ const response = await fetch("/api/memory-review", {
1252
+ method: "POST",
1253
+ headers: {"Content-Type":"application/json"},
1254
+ body: JSON.stringify({
1255
+ action,
1256
+ candidate_id: candidateId,
1257
+ reviewer: "18766-dashboard",
1258
+ reason,
1259
+ }),
1260
+ });
1261
+ const data = await response.json();
1262
+ if (!response.ok || !data.ok) {
1263
+ formMessageEl.textContent = data.error || "Memory review failed.";
1264
+ return;
1265
+ }
1266
+ formMessageEl.textContent = "Memory review updated: " + (data.status || action);
1267
+ } catch (error) {
1268
+ formMessageEl.textContent = "Memory review failed: " + error.message;
1269
+ } finally {
1270
+ reviewActionInFlight = false;
1271
+ fetchStatus();
1272
+ }
1273
+ }
1274
+
1275
+ document.addEventListener("click", event => {
1276
+ const button = event.target.closest("[data-memory-review-action]");
1277
+ if (!button) return;
1278
+ event.preventDefault();
1279
+ if (reviewActionInFlight || button.disabled) return;
1280
+ submitMemoryReviewAction(button);
1281
+ });
1282
+
1283
+ // Init
1284
+ fetchStatus();
1285
+ setInterval(fetchStatus, 2000);
1286
+ document.querySelector('[data-tab="compare"]').addEventListener('click', loadComparison);
1287
+ document.querySelector('[data-tab="files"]').addEventListener('click', loadFiles);
1288
+ document.querySelector('[data-tab="reports"]').addEventListener('click', loadReports);
1289
+ document.getElementById("reportRefresh").addEventListener("click", loadReports);
1290
+ </script>
1291
+ </body>
1292
+ </html>