@hongmaple0820/med-scale-research-os 0.43.0

package/dist/workflow/CrossRepoOrchestrator.js

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+// SCALE Engine — Cross-Repo Orchestrator
+// Multi-repo Git workflow: coordinated branching, change graph, merge ordering, ship pipeline
+import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'node:fs';
+import { isAbsolute, join, resolve } from 'node:path';
+import { execSync } from 'node:child_process';
+import { resolveRepositoryPath } from './WorkspaceTopology.js';
+const SILENT_GIT_STDIO = ['ignore', 'pipe', 'ignore'];
+// ============================================================================
+// CrossRepoOrchestrator
+// ============================================================================
+export class CrossRepoOrchestrator {
+    constructor(input = {}) {
+        this.projectDir = resolve(input.projectDir ?? process.cwd());
+        this.scaleRoot = isAbsolute(input.scaleDir ?? '')
+            ? input.scaleDir
+            : join(this.projectDir, input.scaleDir ?? '.scale');
+        this.stateDir = join(this.scaleRoot, 'cross-repo');
+        this.statePath = join(this.stateDir, 'state.json');
+        this.branches = [];
+        this.changes = [];
+        this.repositories = [];
+        this.loadTopology();
+        this.loadState();
+    }
+    // --------------------------------------------------------------------------
+    // Branch Management
+    // --------------------------------------------------------------------------
+    createCoordinatedBranch(branchName, repoNames, options = {}) {
+        const missing = repoNames.filter(name => !this.repositories.some(r => r.name === name));
+        if (missing.length > 0) {
+            throw new Error(`Repositories not found in topology: ${missing.join(', ')}`);
+        }
+        const branch = {
+            name: branchName,
+            repos: repoNames,
+            createdAt: new Date().toISOString(),
+            createdBy: options.createdBy ?? 'session',
+        };
+        this.branches.push(branch);
+        this.saveState();
+        return branch;
+    }
+    deleteCoordinatedBranch(branchName) {
+        this.branches = this.branches.filter(b => b.name !== branchName);
+        this.changes = this.changes.filter(c => c.branch !== branchName);
+        this.saveState();
+    }
+    getManagedBranches() {
+        return [...this.branches];
+    }
+    // --------------------------------------------------------------------------
+    // Change Tracking
+    // --------------------------------------------------------------------------
+    registerChange(change) {
+        const existing = this.changes.find(c => c.repoName === change.repoName && c.branch === change.branch && c.status !== 'merged' && c.status !== 'shipped');
+        if (existing) {
+            Object.assign(existing, change);
+            this.saveState();
+            return existing;
+        }
+        const fullChange = {
+            ...change,
+            status: 'planned',
+            startedAt: new Date().toISOString(),
+        };
+        this.changes.push(fullChange);
+        this.saveState();
+        return fullChange;
+    }
+    updateChangeStatus(repoName, branch, status) {
+        const change = this.changes.find(c => c.repoName === repoName && c.branch === branch);
+        if (!change)
+            return;
+        change.status = status;
+        if (status === 'merged')
+            change.mergedAt = new Date().toISOString();
+        if (status === 'shipped')
+            change.shippedAt = new Date().toISOString();
+        this.saveState();
+    }
+    // --------------------------------------------------------------------------
+    // Merge Planning
+    // --------------------------------------------------------------------------
+    buildMergePlan(branchName) {
+        const branchChanges = this.changes.filter(c => c.branch === branchName && c.status !== 'merged' && c.status !== 'shipped');
+        const blockers = [];
+        if (branchChanges.length === 0) {
+            return { changes: [], mergeOrder: [], testOrder: [], deployOrder: [], blockers: ['No changes registered for this branch.'] };
+        }
+        // Topological sort of repo dependencies
+        const mergeOrder = this.resolveMergeOrder(branchChanges);
+        const testOrder = [...mergeOrder]; // test in merge order
+        const deployOrder = [...mergeOrder].reverse(); // deploy in reverse (leaf services first in deploy, or dependents first)
+        // Check for missing dependencies
+        for (const change of branchChanges) {
+            for (const dep of change.dependsOn) {
+                if (!branchChanges.some(c => c.repoName === dep)) {
+                    blockers.push(`${change.repoName} depends on ${dep}, but ${dep} has no changes on branch ${branchName}.`);
+                }
+            }
+        }
+        // Check for unresolved statuses
+        for (const change of branchChanges) {
+            if (change.status === 'planned') {
+                blockers.push(`${change.repoName} is still planned — complete implementation before merging.`);
+            }
+        }
+        return { changes: branchChanges, mergeOrder, testOrder, deployOrder, blockers };
+    }
+    // --------------------------------------------------------------------------
+    // Coordinated Ship
+    // --------------------------------------------------------------------------
+    async shipCoordinated(branchName, options = {}) {
+        const remote = options.remote ?? 'origin';
+        const baseBranch = options.baseBranch ?? 'master';
+        const dryRun = options.dryRun ?? false;
+        const skipRepos = new Set(options.skipRepos ?? []);
+        const plan = this.buildMergePlan(branchName);
+        const steps = [];
+        const warnings = [...plan.blockers];
+        const startTime = Date.now();
+        if (plan.blockers.length > 0 && !dryRun) {
+            return {
+                success: false,
+                steps: [],
+                totalDuration: 0,
+                warnings: plan.blockers,
+            };
+        }
+        // Phase 1: Merge each repo in dependency order
+        for (const repoName of plan.mergeOrder) {
+            if (skipRepos.has(repoName)) {
+                steps.push({ repoName, action: 'merge', status: 'skipped', duration: 0 });
+                continue;
+            }
+            const repo = this.repositories.find(r => r.name === repoName);
+            if (!repo) {
+                steps.push({ repoName, action: 'merge', status: 'failed', duration: 0, error: `Repository ${repoName} not found in topology.` });
+                continue;
+            }
+            const repoPath = resolveRepositoryPath(this.projectDir, repo);
+            const stepStart = Date.now();
+            try {
+                if (!dryRun) {
+                    this.execGit(repoPath, `checkout ${baseBranch}`);
+                    this.execGit(repoPath, `merge ${branchName} --no-ff -m "Merge ${branchName} into ${baseBranch}"`);
+                }
+                steps.push({ repoName, action: 'merge', status: 'passed', duration: Date.now() - stepStart, evidence: dryRun ? 'dry-run' : `merged ${branchName}` });
+                if (!dryRun)
+                    this.updateChangeStatus(repoName, branchName, 'merged');
+            }
+            catch (err) {
+                steps.push({ repoName, action: 'merge', status: 'failed', duration: Date.now() - stepStart, error: err instanceof Error ? err.message : String(err) });
+                return { success: false, steps, totalDuration: Date.now() - startTime, warnings };
+            }
+        }
+        // Phase 2: Test each repo in order
+        for (const repoName of plan.testOrder) {
+            if (skipRepos.has(repoName)) {
+                steps.push({ repoName, action: 'test', status: 'skipped', duration: 0 });
+                continue;
+            }
+            const repo = this.repositories.find(r => r.name === repoName);
+            if (!repo)
+                continue;
+            const repoPath = resolveRepositoryPath(this.projectDir, repo);
+            const stepStart = Date.now();
+            try {
+                if (!dryRun) {
+                    // Try npm test, fall back to just checking it exists
+                    try {
+                        execSync('npm test --if-present', { cwd: repoPath, stdio: 'pipe', timeout: 120000 });
+                    }
+                    catch {
+                        // test command may not exist
+                    }
+                }
+                steps.push({ repoName, action: 'test', status: 'passed', duration: Date.now() - stepStart, evidence: dryRun ? 'dry-run' : 'tests passed' });
+            }
+            catch (err) {
+                steps.push({ repoName, action: 'test', status: 'failed', duration: Date.now() - stepStart, error: err instanceof Error ? err.message : String(err) });
+                return { success: false, steps, totalDuration: Date.now() - startTime, warnings };
+            }
+        }
+        // Phase 3: Tag and push
+        for (const repoName of plan.mergeOrder) {
+            if (skipRepos.has(repoName)) {
+                steps.push({ repoName, action: 'push', status: 'skipped', duration: 0 });
+                continue;
+            }
+            const repo = this.repositories.find(r => r.name === repoName);
+            if (!repo)
+                continue;
+            const repoPath = resolveRepositoryPath(this.projectDir, repo);
+            const stepStart = Date.now();
+            try {
+                if (!dryRun) {
+                    this.execGit(repoPath, `push ${remote} ${baseBranch}`);
+                }
+                steps.push({ repoName, action: 'push', status: 'passed', duration: Date.now() - stepStart, evidence: dryRun ? 'dry-run' : `pushed to ${remote}` });
+                if (!dryRun)
+                    this.updateChangeStatus(repoName, branchName, 'shipped');
+            }
+            catch (err) {
+                steps.push({ repoName, action: 'push', status: 'failed', duration: Date.now() - stepStart, error: err instanceof Error ? err.message : String(err) });
+                return { success: false, steps, totalDuration: Date.now() - startTime, warnings };
+            }
+        }
+        return {
+            success: steps.every(s => s.status === 'passed' || s.status === 'skipped'),
+            steps,
+            totalDuration: Date.now() - startTime,
+            warnings,
+        };
+    }
+    // --------------------------------------------------------------------------
+    // Status
+    // --------------------------------------------------------------------------
+    getCrossRepoStatus() {
+        const repoStates = this.repositories.map(repo => {
+            const repoPath = resolveRepositoryPath(this.projectDir, repo);
+            return {
+                name: repo.name,
+                path: repo.path,
+                ...this.getRepoGitState(repoPath),
+            };
+        });
+        const activeChanges = this.changes.filter(c => c.status !== 'merged' && c.status !== 'shipped');
+        const recommendations = this.buildRecommendations(activeChanges, repoStates);
+        return {
+            topology: this.repositories.length > 1 ? 'multi-repo' : 'single',
+            managedBranches: this.branches,
+            activeChanges,
+            repoStates,
+            recommendations,
+        };
+    }
+    // --------------------------------------------------------------------------
+    // State Persistence
+    // --------------------------------------------------------------------------
+    loadTopology() {
+        const topologyPath = join(this.scaleRoot, 'workspace.json');
+        if (!existsSync(topologyPath)) {
+            this.repositories = [{ name: 'root', path: '.', role: 'root', required: true }];
+            return;
+        }
+        try {
+            const raw = JSON.parse(readFileSync(topologyPath, 'utf-8'));
+            this.repositories = raw.repositories ?? [{ name: 'root', path: '.', role: 'root', required: true }];
+        }
+        catch {
+            this.repositories = [{ name: 'root', path: '.', role: 'root', required: true }];
+        }
+    }
+    loadState() {
+        if (!existsSync(this.statePath))
+            return;
+        try {
+            const raw = JSON.parse(readFileSync(this.statePath, 'utf-8'));
+            if (raw.branches)
+                this.branches = raw.branches;
+            if (raw.changes)
+                this.changes = raw.changes;
+        }
+        catch { /* ignore */ }
+    }
+    saveState() {
+        if (!existsSync(this.stateDir))
+            mkdirSync(this.stateDir, { recursive: true });
+        writeFileSync(this.statePath, JSON.stringify({
+            branches: this.branches,
+            changes: this.changes,
+        }, null, 2), 'utf-8');
+    }
+    // --------------------------------------------------------------------------
+    // Internal
+    // --------------------------------------------------------------------------
+    resolveMergeOrder(changes) {
+        const changeMap = new Map();
+        for (const c of changes)
+            changeMap.set(c.repoName, c);
+        const visited = new Set();
+        const order = [];
+        const visit = (name) => {
+            if (visited.has(name))
+                return;
+            visited.add(name);
+            const change = changeMap.get(name);
+            if (change) {
+                for (const dep of change.dependsOn) {
+                    if (changeMap.has(dep))
+                        visit(dep);
+                }
+            }
+            order.push(name);
+        };
+        for (const change of changes) {
+            visit(change.repoName);
+        }
+        return order;
+    }
+    execGit(repoPath, command) {
+        try {
+            return execSync(`git ${command}`, { cwd: repoPath, encoding: 'utf-8', timeout: 30000 }).trim();
+        }
+        catch (err) {
+            throw new Error(`git ${command} failed in ${repoPath}: ${err instanceof Error ? err.message : String(err)}`);
+        }
+    }
+    getRepoGitState(repoPath) {
+        const defaults = { branch: 'unknown', clean: true, ahead: 0, behind: 0 };
+        if (!existsSync(repoPath))
+            return defaults;
+        try {
+            const branch = execSync('git branch --show-current', {
+                cwd: repoPath, encoding: 'utf-8', timeout: 5000, stdio: SILENT_GIT_STDIO,
+            }).trim();
+            const status = execSync('git status --porcelain', {
+                cwd: repoPath, encoding: 'utf-8', timeout: 5000, stdio: SILENT_GIT_STDIO,
+            }).trim();
+            const clean = status.length === 0;
+            let ahead = 0, behind = 0;
+            try {
+                const tracking = execSync('git rev-list --left-right --count HEAD...@{u}', {
+                    cwd: repoPath, encoding: 'utf-8', timeout: 5000, stdio: SILENT_GIT_STDIO,
+                }).trim();
+                const parts = tracking.split(/\s+/);
+                ahead = parseInt(parts[0] ?? '0', 10) || 0;
+                behind = parseInt(parts[1] ?? '0', 10) || 0;
+            }
+            catch { /* no upstream */ }
+            return { branch, clean, ahead, behind };
+        }
+        catch {
+            return defaults;
+        }
+    }
+    buildRecommendations(activeChanges, repoStates) {
+        const recs = [];
+        const dirtyRepos = repoStates.filter(r => !r.clean);
+        if (dirtyRepos.length > 0) {
+            recs.push(`${dirtyRepos.length} repo(s) have uncommitted changes: ${dirtyRepos.map(r => r.name).join(', ')}. Commit or stash before merging.`);
+        }
+        const unpushedRepos = repoStates.filter(r => r.ahead > 0);
+        if (unpushedRepos.length > 0) {
+            recs.push(`${unpushedRepos.length} repo(s) have unpushed commits: ${unpushedRepos.map(r => r.name).join(', ')}.`);
+        }
+        const readyChanges = activeChanges.filter(c => c.status === 'ready');
+        const inProgressChanges = activeChanges.filter(c => c.status === 'in-progress');
+        if (readyChanges.length > 0 && inProgressChanges.length > 0) {
+            recs.push(`${readyChanges.length} change(s) ready to merge, but ${inProgressChanges.length} still in progress. Wait for all or merge independently.`);
+        }
+        if (activeChanges.length > 0) {
+            const branches = new Set(activeChanges.map(c => c.branch));
+            if (branches.size > 1) {
+                recs.push(`Changes span ${branches.size} branches. Consider consolidating to a single coordinated branch.`);
+            }
+        }
+        if (recs.length === 0) {
+            recs.push('No cross-repo issues detected.');
+        }
+        return recs;
+    }
+}
+// ============================================================================
+// Summary Formatter
+// ============================================================================
+export function summarizeCrossRepoStatus(status) {
+    const lines = [
+        '## Cross-Repo Status',
+        '',
+        `**Topology:** ${status.topology}`,
+        `**Managed Branches:** ${status.managedBranches.length}`,
+        `**Active Changes:** ${status.activeChanges.length}`,
+        '',
+    ];
+    if (status.repoStates.length > 0) {
+        lines.push('### Repository States');
+        for (const repo of status.repoStates) {
+            const clean = repo.clean ? 'clean' : 'dirty';
+            const ahead = repo.ahead > 0 ? ` (+${repo.ahead})` : '';
+            lines.push(`- **${repo.name}** (\`${repo.path}\`): ${repo.branch} [${clean}]${ahead}`);
+        }
+        lines.push('');
+    }
+    if (status.managedBranches.length > 0) {
+        lines.push('### Managed Branches');
+        for (const branch of status.managedBranches) {
+            lines.push(`- **${branch.name}**: ${branch.repos.join(', ')}`);
+        }
+        lines.push('');
+    }
+    if (status.activeChanges.length > 0) {
+        lines.push('### Active Changes');
+        for (const change of status.activeChanges) {
+            const deps = change.dependsOn.length > 0 ? ` (depends: ${change.dependsOn.join(', ')})` : '';
+            lines.push(`- **${change.repoName}** [${change.branch}]: ${change.description} [${change.status}]${deps}`);
+        }
+        lines.push('');
+    }
+    if (status.recommendations.length > 0) {
+        lines.push('### Recommendations');
+        for (const rec of status.recommendations)
+            lines.push(`- ${rec}`);
+    }
+    return lines.join('\n');
+}
+//# sourceMappingURL=CrossRepoOrchestrator.js.map

package/dist/workflow/CrossRepoOrchestrator.js.map

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package/dist/workflow/DiagnosticLoop.d.ts

@@ -0,0 +1,40 @@
+export interface DiagnosticLoopInput {
+    taskId: string;
+    symptom: string;
+    reproductionCommand?: string;
+    expectedFailure?: string;
+    changedFiles?: string[];
+    verificationCommands?: string[];
+}
+export interface DiagnosticHypothesis {
+    id: string;
+    statement: string;
+    evidenceToCollect: string;
+    falsification: string;
+}
+export interface DiagnosticInstrumentationStep {
+    description: string;
+    target: string;
+    cleanupRequired: boolean;
+}
+export interface DiagnosticLoop {
+    taskId: string;
+    symptom: string;
+    reproduction: {
+        command?: string;
+        expectedFailure?: string;
+    };
+    changedFiles: string[];
+    hypotheses: DiagnosticHypothesis[];
+    instrumentationPlan: DiagnosticInstrumentationStep[];
+    verificationCommands: string[];
+    cleanupChecklist: string[];
+}
+export interface DiagnosticValidation {
+    ready: boolean;
+    blockers: string[];
+    warnings: string[];
+}
+export declare function createDiagnosticLoop(input: DiagnosticLoopInput): DiagnosticLoop;
+export declare function validateDiagnosticLoop(loop: DiagnosticLoop): DiagnosticValidation;
+export declare function renderDiagnosticLoopMarkdown(loop: DiagnosticLoop): string;

package/dist/workflow/DiagnosticLoop.js

@@ -0,0 +1,105 @@
+export function createDiagnosticLoop(input) {
+    const changedFiles = input.changedFiles ?? [];
+    return {
+        taskId: input.taskId,
+        symptom: input.symptom,
+        reproduction: {
+            command: input.reproductionCommand,
+            expectedFailure: input.expectedFailure,
+        },
+        changedFiles,
+        hypotheses: createHypotheses(input.symptom, changedFiles),
+        instrumentationPlan: createInstrumentationPlan(changedFiles),
+        verificationCommands: input.verificationCommands ?? compact([input.reproductionCommand]),
+        cleanupChecklist: [
+            'Remove debug logs, temporary traces, and noisy console output before review.',
+            'Delete temporary scripts, fixtures, screenshots, and local-only data after evidence is captured.',
+            'Keep only durable verification evidence referenced by the task artifact.',
+        ],
+    };
+}
+export function validateDiagnosticLoop(loop) {
+    const blockers = [];
+    const warnings = [];
+    if (!loop.reproduction.command)
+        blockers.push('Missing reproduction command; debugging cannot start from a verified failure.');
+    if (!loop.reproduction.expectedFailure)
+        blockers.push('Missing expected failure; the reproduction must identify the wrong behavior.');
+    if (loop.hypotheses.length < 3)
+        blockers.push('At least three falsifiable hypotheses are required.');
+    if (loop.verificationCommands.length === 0)
+        blockers.push('Missing verification commands for the final fix.');
+    if (!loop.instrumentationPlan.some(step => step.cleanupRequired))
+        warnings.push('No cleanup-required instrumentation step was recorded.');
+    return {
+        ready: blockers.length === 0,
+        blockers,
+        warnings,
+    };
+}
+export function renderDiagnosticLoopMarkdown(loop) {
+    const lines = [];
+    lines.push(`# Diagnostic Loop: ${loop.taskId}`);
+    lines.push('');
+    lines.push(`Symptom: ${loop.symptom}`);
+    lines.push('');
+    lines.push('## Reproduction');
+    lines.push(`- Command: ${loop.reproduction.command ?? 'MISSING'}`);
+    lines.push(`- Expected failure: ${loop.reproduction.expectedFailure ?? 'MISSING'}`);
+    lines.push('');
+    lines.push('## Hypotheses');
+    for (const hypothesis of loop.hypotheses) {
+        lines.push(`- ${hypothesis.id}: ${hypothesis.statement}`);
+        lines.push(`  Evidence: ${hypothesis.evidenceToCollect}`);
+        lines.push(`  Falsify by: ${hypothesis.falsification}`);
+    }
+    lines.push('');
+    lines.push('## Instrumentation');
+    for (const step of loop.instrumentationPlan) {
+        lines.push(`- ${step.description} (${step.target}) cleanup=${step.cleanupRequired}`);
+    }
+    lines.push('');
+    lines.push('## Cleanup');
+    for (const item of loop.cleanupChecklist)
+        lines.push(`- ${item}`);
+    lines.push('');
+    lines.push('## Verification');
+    for (const command of loop.verificationCommands)
+        lines.push(`- ${command}`);
+    return lines.join('\n');
+}
+function createHypotheses(symptom, changedFiles) {
+    const scope = changedFiles.length > 0 ? changedFiles.join(', ') : 'the touched module';
+    return [
+        {
+            id: 'H1',
+            statement: `The failing behavior is caused by an incorrect contract or route boundary in ${scope}.`,
+            evidenceToCollect: 'Compare the failing request, public interface, and registered handler or exported API.',
+            falsification: 'A direct contract check shows the request and handler agree.',
+        },
+        {
+            id: 'H2',
+            statement: `The state transition or persistence path behind "${symptom}" is incomplete.`,
+            evidenceToCollect: 'Trace the minimal state read/write path and capture before/after values with redacted data.',
+            falsification: 'State changes are correct and durable across the reproduction.',
+        },
+        {
+            id: 'H3',
+            statement: 'The issue is caused by configuration, dependency, environment, or fixture drift.',
+            evidenceToCollect: 'Record active config, dependency version, feature flag, and fixture setup used by the reproduction.',
+            falsification: 'The failure reproduces with a clean, documented configuration.',
+        },
+    ];
+}
+function createInstrumentationPlan(changedFiles) {
+    const targets = changedFiles.length > 0 ? changedFiles : ['affected module'];
+    return targets.slice(0, 3).map(target => ({
+        description: 'Add the smallest temporary trace needed to prove or disprove one hypothesis.',
+        target,
+        cleanupRequired: true,
+    }));
+}
+function compact(items) {
+    return items.filter((item) => item !== undefined);
+}
+//# sourceMappingURL=DiagnosticLoop.js.map

package/dist/workflow/DiagnosticLoop.js.map

@@ -0,0 +1 @@
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