@hongmaple0820/med-scale-research-os 0.43.0

package/dist/workflow/GovernanceTemplates.js.map

@@ -0,0 +1 @@
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package/dist/workflow/McpGovernance.d.ts

@@ -0,0 +1,63 @@
+export type McpServerStatus = 'unknown' | 'healthy' | 'degraded' | 'unhealthy' | 'blocked';
+export type McpSecurityLevel = 'trusted' | 'review' | 'untrusted';
+export interface McpServerRegistration {
+    id: string;
+    name: string;
+    transport: 'stdio' | 'sse' | 'streamable-http';
+    command?: string;
+    url?: string;
+    version?: string;
+    securityLevel: McpSecurityLevel;
+    capabilities: string[];
+    registeredAt: string;
+    lastHealthCheck?: string;
+    status: McpServerStatus;
+}
+export interface McpHealthCheckResult {
+    serverId: string;
+    status: McpServerStatus;
+    latency?: number;
+    toolCount?: number;
+    error?: string;
+    checkedAt: string;
+}
+export interface McpGovernanceConfig {
+    autoHealthCheck: boolean;
+    healthCheckIntervalMs: number;
+    blockUntrusted: boolean;
+    requiredCapabilities: string[];
+    maxLatencyMs: number;
+}
+export interface McpSecurityScanResult {
+    serverId: string;
+    findings: McpSecurityFinding[];
+    riskLevel: 'low' | 'medium' | 'high' | 'critical';
+    scannedAt: string;
+}
+export interface McpSecurityFinding {
+    id: string;
+    severity: 'low' | 'medium' | 'high' | 'critical';
+    title: string;
+    description: string;
+    recommendation: string;
+}
+export declare class McpGovernor {
+    private servers;
+    private config;
+    private now;
+    constructor(config?: McpGovernanceConfig, now?: () => Date);
+    register(server: Omit<McpServerRegistration, 'registeredAt' | 'status'>): McpServerRegistration;
+    unregister(id: string): void;
+    getServer(id: string): McpServerRegistration | undefined;
+    listServers(): McpServerRegistration[];
+    checkHealth(id: string): McpHealthCheckResult;
+    checkAllHealth(): McpHealthCheckResult[];
+    scanSecurity(id: string): McpSecurityScanResult;
+    isAllowed(id: string, toolName: string): {
+        allowed: boolean;
+        reason?: string;
+    };
+    getConfig(): McpGovernanceConfig;
+    updateConfig(patch: Partial<McpGovernanceConfig>): void;
+    loadFromProject(projectDir?: string): void;
+}

package/dist/workflow/McpGovernance.js

@@ -0,0 +1,198 @@
+// SCALE Engine — MCP Lifecycle Governance (v0.34.0)
+// MCP server lifecycle management with health checks, security scanning, and policy enforcement
+import { existsSync, readFileSync } from 'node:fs';
+import { join, resolve } from 'node:path';
+import yaml from 'js-yaml';
+import { randomUUID } from 'node:crypto';
+const DEFAULT_GOVERNANCE_CONFIG = {
+    autoHealthCheck: true,
+    healthCheckIntervalMs: 30000,
+    blockUntrusted: false,
+    requiredCapabilities: [],
+    maxLatencyMs: 5000,
+};
+export class McpGovernor {
+    constructor(config, now) {
+        this.servers = new Map();
+        this.config = config ?? { ...DEFAULT_GOVERNANCE_CONFIG };
+        this.now = now ?? (() => new Date());
+    }
+    register(server) {
+        const existing = this.servers.get(server.id);
+        const registration = {
+            ...server,
+            registeredAt: existing?.registeredAt ?? this.now().toISOString(),
+            status: existing?.status ?? 'unknown',
+            lastHealthCheck: existing?.lastHealthCheck,
+        };
+        this.servers.set(server.id, registration);
+        return registration;
+    }
+    unregister(id) {
+        this.servers.delete(id);
+    }
+    getServer(id) {
+        return this.servers.get(id);
+    }
+    listServers() {
+        return [...this.servers.values()];
+    }
+    checkHealth(id) {
+        const server = this.servers.get(id);
+        if (!server) {
+            return {
+                serverId: id,
+                status: 'unhealthy',
+                error: 'Server not registered',
+                checkedAt: this.now().toISOString(),
+            };
+        }
+        // Blocked servers stay blocked
+        if (server.status === 'blocked') {
+            return {
+                serverId: id,
+                status: 'blocked',
+                error: 'Server is blocked by governance policy',
+                checkedAt: this.now().toISOString(),
+            };
+        }
+        // Check security level against policy
+        if (this.config.blockUntrusted && server.securityLevel === 'untrusted') {
+            server.status = 'blocked';
+            return {
+                serverId: id,
+                status: 'blocked',
+                error: 'Untrusted server blocked by governance policy',
+                checkedAt: this.now().toISOString(),
+            };
+        }
+        // Simulate health check based on registration data
+        const latency = server.transport === 'stdio' ? 50 : 200;
+        const status = latency > this.config.maxLatencyMs ? 'degraded' : 'healthy';
+        server.status = status;
+        server.lastHealthCheck = this.now().toISOString();
+        return {
+            serverId: id,
+            status,
+            latency,
+            toolCount: server.capabilities.length,
+            checkedAt: server.lastHealthCheck,
+        };
+    }
+    checkAllHealth() {
+        return [...this.servers.keys()].map(id => this.checkHealth(id));
+    }
+    scanSecurity(id) {
+        const server = this.servers.get(id);
+        const scannedAt = this.now().toISOString();
+        if (!server) {
+            return {
+                serverId: id,
+                findings: [{
+                        id: `MCP-SEC-${randomUUID().slice(0, 8)}`,
+                        severity: 'high',
+                        title: 'Unregistered server',
+                        description: `Server "${id}" is not registered in the governance system`,
+                        recommendation: 'Register the server before use',
+                    }],
+                riskLevel: 'high',
+                scannedAt,
+            };
+        }
+        const findings = [];
+        // Check security level
+        if (server.securityLevel === 'untrusted') {
+            findings.push({
+                id: `MCP-SEC-${randomUUID().slice(0, 8)}`,
+                severity: 'high',
+                title: 'Untrusted security level',
+                description: `Server "${server.name}" has untrusted security level`,
+                recommendation: 'Review server source and upgrade to "review" or "trusted" after validation',
+            });
+        }
+        // Check required capabilities
+        for (const cap of this.config.requiredCapabilities) {
+            if (!server.capabilities.includes(cap)) {
+                findings.push({
+                    id: `MCP-SEC-${randomUUID().slice(0, 8)}`,
+                    severity: 'medium',
+                    title: 'Missing required capability',
+                    description: `Server "${server.name}" is missing required capability "${cap}"`,
+                    recommendation: `Add "${cap}" capability to the server configuration`,
+                });
+            }
+        }
+        // Check transport security
+        if (server.transport === 'sse' && !server.url?.startsWith('https://')) {
+            findings.push({
+                id: `MCP-SEC-${randomUUID().slice(0, 8)}`,
+                severity: 'medium',
+                title: 'Insecure transport',
+                description: `Server "${server.name}" uses SSE without HTTPS`,
+                recommendation: 'Use HTTPS for SSE transport to prevent MITM attacks',
+            });
+        }
+        // Check for stdio with command injection risk
+        if (server.transport === 'stdio' && server.command) {
+            if (server.command.includes('&&') || server.command.includes('|') || server.command.includes(';')) {
+                findings.push({
+                    id: `MCP-SEC-${randomUUID().slice(0, 8)}`,
+                    severity: 'critical',
+                    title: 'Potential command injection',
+                    description: `Server "${server.name}" command contains shell operators`,
+                    recommendation: 'Remove shell operators from the command; use separate arguments',
+                });
+            }
+        }
+        const riskLevel = findings.some(f => f.severity === 'critical')
+            ? 'critical'
+            : findings.some(f => f.severity === 'high')
+                ? 'high'
+                : findings.some(f => f.severity === 'medium')
+                    ? 'medium'
+                    : 'low';
+        return { serverId: id, findings, riskLevel, scannedAt };
+    }
+    isAllowed(id, toolName) {
+        const server = this.servers.get(id);
+        if (!server)
+            return { allowed: false, reason: 'Server not registered' };
+        if (server.status === 'blocked')
+            return { allowed: false, reason: 'Server is blocked' };
+        if (this.config.blockUntrusted && server.securityLevel === 'untrusted') {
+            return { allowed: false, reason: 'Untrusted server blocked by governance policy' };
+        }
+        if (!server.capabilities.includes(toolName)) {
+            return { allowed: false, reason: `Tool "${toolName}" not in server capabilities` };
+        }
+        return { allowed: true };
+    }
+    getConfig() {
+        return { ...this.config };
+    }
+    updateConfig(patch) {
+        Object.assign(this.config, patch);
+    }
+    loadFromProject(projectDir) {
+        const dir = resolve(projectDir ?? process.cwd());
+        const configPath = join(dir, '.scale', 'mcp-servers.yaml');
+        if (!existsSync(configPath))
+            return;
+        try {
+            const content = readFileSync(configPath, 'utf-8');
+            const parsed = yaml.load(content);
+            if (parsed.governance) {
+                Object.assign(this.config, parsed.governance);
+            }
+            if (Array.isArray(parsed.servers)) {
+                for (const server of parsed.servers) {
+                    this.register(server);
+                }
+            }
+        }
+        catch {
+            // ignore parse errors
+        }
+    }
+}
+//# sourceMappingURL=McpGovernance.js.map

package/dist/workflow/McpGovernance.js.map

@@ -0,0 +1 @@
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package/dist/workflow/OutOfScopeStore.d.ts

@@ -0,0 +1,37 @@
+export interface OutOfScopeEntry {
+    concept: string;
+    title: string;
+    reason: string;
+    technicalContext?: string;
+    priorRequests: string[];
+    createdAt: number;
+    updatedAt: number;
+}
+export declare class OutOfScopeStore {
+    private dir;
+    constructor(scaleDir: string);
+    /**
+     * Record a rejected concept.
+     * If a file for this concept already exists, append the new request to Prior requests.
+     */
+    add(entry: Omit<OutOfScopeEntry, 'createdAt' | 'updatedAt'>): OutOfScopeEntry;
+    /**
+     * Check if a concept or description matches any existing out-of-scope entry.
+     * Matching is by concept similarity — exact concept name OR keyword overlap in title.
+     */
+    check(concept: string, description?: string): OutOfScopeEntry | null;
+    /**
+     * List all out-of-scope entries.
+     */
+    list(): OutOfScopeEntry[];
+    /**
+     * Remove an out-of-scope entry (maintainer changed their mind).
+     */
+    remove(concept: string): boolean;
+    /**
+     * Get the out-of-scope directory path.
+     */
+    getDir(): string;
+    private formatMarkdown;
+    private parseMarkdown;
+}

package/dist/workflow/OutOfScopeStore.js

@@ -0,0 +1,164 @@
+// SCALE Engine — Out-of-Scope Knowledge Base
+// 借鉴 mattpocock/skills 的 .out-of-scope/ 设计模式
+// 持久化被拒绝的功能请求，提供机构记忆和去重
+import { existsSync, readFileSync, writeFileSync, readdirSync, mkdirSync, unlinkSync } from 'node:fs';
+import { join, basename } from 'node:path';
+import { logger } from '../core/logger.js';
+export class OutOfScopeStore {
+    constructor(scaleDir) {
+        this.dir = join(scaleDir, 'out-of-scope');
+        if (!existsSync(this.dir)) {
+            mkdirSync(this.dir, { recursive: true });
+        }
+    }
+    /**
+     * Record a rejected concept.
+     * If a file for this concept already exists, append the new request to Prior requests.
+     */
+    add(entry) {
+        const now = Date.now();
+        const filePath = join(this.dir, `${entry.concept}.md`);
+        if (existsSync(filePath)) {
+            // Append to existing entry
+            const existing = this.parseMarkdown(readFileSync(filePath, 'utf-8'), basename(filePath));
+            const newRequests = entry.priorRequests.filter(r => !existing.priorRequests.includes(r));
+            const updated = {
+                ...existing,
+                priorRequests: [...existing.priorRequests, ...newRequests],
+                updatedAt: now,
+            };
+            writeFileSync(filePath, this.formatMarkdown(updated), 'utf-8');
+            logger.info({ concept: entry.concept, appended: newRequests.length }, 'Out-of-scope entry updated');
+            return updated;
+        }
+        const full = {
+            ...entry,
+            createdAt: now,
+            updatedAt: now,
+        };
+        writeFileSync(filePath, this.formatMarkdown(full), 'utf-8');
+        logger.info({ concept: entry.concept }, 'Out-of-scope entry created');
+        return full;
+    }
+    /**
+     * Check if a concept or description matches any existing out-of-scope entry.
+     * Matching is by concept similarity — exact concept name OR keyword overlap in title.
+     */
+    check(concept, description) {
+        if (!existsSync(this.dir))
+            return null;
+        const files = readdirSync(this.dir).filter(f => f.endsWith('.md'));
+        const exactMatch = files.find(f => f === `${concept}.md`);
+        if (exactMatch) {
+            return this.parseMarkdown(readFileSync(join(this.dir, exactMatch), 'utf-8'), exactMatch);
+        }
+        // Fuzzy match by description keywords
+        if (description) {
+            const keywords = description.toLowerCase().split(/\s+/).filter(w => w.length > 3);
+            for (const file of files) {
+                const entry = this.parseMarkdown(readFileSync(join(this.dir, file), 'utf-8'), file);
+                const entryText = `${entry.title} ${entry.reason}`.toLowerCase();
+                const matchCount = keywords.filter(kw => entryText.includes(kw)).length;
+                if (matchCount >= 2)
+                    return entry;
+            }
+        }
+        return null;
+    }
+    /**
+     * List all out-of-scope entries.
+     */
+    list() {
+        if (!existsSync(this.dir))
+            return [];
+        return readdirSync(this.dir)
+            .filter(f => f.endsWith('.md'))
+            .map(f => this.parseMarkdown(readFileSync(join(this.dir, f), 'utf-8'), f))
+            .sort((a, b) => b.updatedAt - a.updatedAt);
+    }
+    /**
+     * Remove an out-of-scope entry (maintainer changed their mind).
+     */
+    remove(concept) {
+        const filePath = join(this.dir, `${concept}.md`);
+        if (existsSync(filePath)) {
+            unlinkSync(filePath);
+            logger.info({ concept }, 'Out-of-scope entry removed');
+            return true;
+        }
+        return false;
+    }
+    /**
+     * Get the out-of-scope directory path.
+     */
+    getDir() {
+        return this.dir;
+    }
+    // ============================================================================
+    // Markdown Format
+    // ============================================================================
+    formatMarkdown(entry) {
+        let md = `# ${entry.title}\n\n`;
+        md += `${entry.reason}\n\n`;
+        if (entry.technicalContext) {
+            md += `## Technical Context\n\n${entry.technicalContext}\n\n`;
+        }
+        if (entry.priorRequests.length > 0) {
+            md += `## Prior Requests\n\n`;
+            for (const req of entry.priorRequests) {
+                md += `- ${req}\n`;
+            }
+            md += '\n';
+        }
+        md += `---\n`;
+        md += `_Created: ${new Date(entry.createdAt).toISOString().split('T')[0]}_  \n`;
+        md += `_Updated: ${new Date(entry.updatedAt).toISOString().split('T')[0]}_\n`;
+        return md;
+    }
+    parseMarkdown(md, filename) {
+        const lines = md.split('\n');
+        const title = lines[0]?.replace(/^# /, '') ?? 'Unknown';
+        const reasonLines = [];
+        let techLines = [];
+        let inTech = false;
+        const priorRequests = [];
+        let inPrior = false;
+        for (let i = 1; i < lines.length; i++) {
+            const line = lines[i];
+            if (line.startsWith('## Technical Context')) {
+                inTech = true;
+                continue;
+            }
+            if (line.startsWith('## Prior Requests')) {
+                inTech = false;
+                inPrior = true;
+                continue;
+            }
+            if (line.startsWith('---'))
+                break;
+            if (line.startsWith('_Created:'))
+                continue;
+            if (line.startsWith('_Updated:'))
+                continue;
+            if (inPrior && line.startsWith('- ')) {
+                priorRequests.push(line.replace(/^- /, '').trim());
+            }
+            else if (inTech) {
+                techLines.push(line);
+            }
+            else if (line.trim()) {
+                reasonLines.push(line);
+            }
+        }
+        return {
+            concept: filename ? basename(filename, '.md') : basename(title.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/-+$/, '')),
+            title,
+            reason: reasonLines.join('\n').trim(),
+            technicalContext: techLines.join('\n').trim() || undefined,
+            priorRequests,
+            createdAt: 0,
+            updatedAt: 0,
+        };
+    }
+}
+//# sourceMappingURL=OutOfScopeStore.js.map

package/dist/workflow/OutOfScopeStore.js.map

@@ -0,0 +1 @@
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package/dist/workflow/PhaseMarkerTracker.d.ts

@@ -0,0 +1,63 @@
+export type ScalePhase = 'DEFINE' | 'PLAN' | 'EXECUTE' | 'VERIFY' | 'REVIEW' | 'SHIP';
+export interface PhaseStatus {
+    completed: boolean;
+    marker?: string;
+    details?: Record<string, string>;
+    timestamp?: number;
+}
+export interface PhaseState {
+    DEFINE: PhaseStatus;
+    PLAN: PhaseStatus;
+    EXECUTE: PhaseStatus;
+    VERIFY: PhaseStatus;
+    REVIEW: PhaseStatus;
+    SHIP: PhaseStatus;
+}
+export declare class PhaseMarkerTracker {
+    private stateDir;
+    private stateFile;
+    constructor(scaleDir?: string);
+    private ensureDir;
+    /**
+     * 解析文本中的所有 Output Markers 并更新状态
+     * @param text 包含 markers 的文本（对话输出）
+     * @returns 本次解析出的 markers 数量
+     */
+    parseAndUpdate(text: string): number;
+    /**
+     * 解析文本中的所有 Output Markers
+     * @returns 解析结果 Map<Phase, PhaseStatus>
+     */
+    parseMarkers(text: string): Partial<Record<ScalePhase, PhaseStatus>>;
+    /** 获取当前 Phase 状态 */
+    getState(): PhaseState;
+    /** 手动标记 Phase 完成 */
+    markComplete(phase: ScalePhase, details?: Record<string, string>): void;
+    /** 重置 Phase 状态 */
+    resetPhase(phase: ScalePhase): void;
+    /** 重置所有状态 */
+    resetAll(): void;
+    /** 检查单个 Phase 是否完成 */
+    isPhaseComplete(phase: ScalePhase): boolean;
+    /** 检查所有必需 Phase 是否完成 */
+    isAllComplete(): boolean;
+    /** 获取缺失的 Phase 列表 */
+    getMissingPhases(): ScalePhase[];
+    /** 获取已完成的 Phase 列表 */
+    getCompletedPhases(): ScalePhase[];
+    /** 生成状态报告 */
+    generateReport(): string;
+    /** 生成 Stop Hook 检查结果 */
+    generateStopHookResult(): {
+        pass: boolean;
+        message: string;
+        missing: string[];
+    };
+    private createDefaultState;
+    private writeState;
+}
+/** 快速解析单个 marker 行（供 CLI 和 Hook 使用） */
+export declare function parsePhaseMarker(line: string): {
+    phase: ScalePhase;
+    details: Record<string, string>;
+} | null;