@hongmaple0820/med-scale-research-os 0.43.0

package/dist/tools/SafeCommandRunner.js

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+import { execa } from 'execa';
+const SHELL_META = new Set(['|', '&', ';', '<', '>', '`', '$', '(', ')']);
+export function parseCommandLine(command) {
+    const tokens = [];
+    let current = '';
+    let quote = null;
+    for (let index = 0; index < command.length; index += 1) {
+        const char = command[index];
+        if (quote) {
+            if (char === quote) {
+                quote = null;
+            }
+            else if (quote === '"' && char === '\\' && index + 1 < command.length) {
+                index += 1;
+                current += command[index];
+            }
+            else {
+                current += char;
+            }
+            continue;
+        }
+        if (char === '"' || char === "'") {
+            quote = char;
+            continue;
+        }
+        if (/\s/.test(char)) {
+            if (current) {
+                tokens.push(current);
+                current = '';
+            }
+            continue;
+        }
+        if (char === '\\' && index + 1 < command.length) {
+            index += 1;
+            current += command[index];
+            continue;
+        }
+        if (SHELL_META.has(char)) {
+            throw new Error(`Shell metacharacter "${char}" is not allowed in verification commands. Use package scripts or set SCALE_ALLOW_SHELL_COMMANDS=1 for a trusted local run.`);
+        }
+        current += char;
+    }
+    if (quote)
+        throw new Error('Unterminated quote in command');
+    if (current)
+        tokens.push(current);
+    if (tokens.length === 0)
+        throw new Error('Command is empty');
+    return { file: tokens[0], args: tokens.slice(1) };
+}
+export async function runSafeCommand(command, options = {}) {
+    const allowShell = options.allowShell || process.env.SCALE_ALLOW_SHELL_COMMANDS === '1';
+    const execaOptions = {
+        cwd: options.cwd,
+        timeout: options.timeout,
+        reject: false,
+    };
+    const result = allowShell
+        ? await execa(command, { ...execaOptions, shell: true })
+        : await runWithoutShell(command, execaOptions);
+    return {
+        exitCode: result.exitCode ?? 1,
+        stdout: commandOutputToString(result.stdout),
+        stderr: commandOutputToString(result.stderr),
+    };
+}
+function commandOutputToString(value) {
+    if (typeof value === 'string')
+        return value;
+    if (value === undefined || value === null)
+        return '';
+    if (value instanceof Uint8Array)
+        return new TextDecoder().decode(value);
+    return String(value);
+}
+async function runWithoutShell(command, options) {
+    const parsed = parseCommandLine(command);
+    return execa(parsed.file, parsed.args, {
+        ...options,
+        shell: false,
+    });
+}
+//# sourceMappingURL=SafeCommandRunner.js.map

package/dist/tools/SafeCommandRunner.js.map

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package/dist/tools/ToolCapabilityRegistry.d.ts

@@ -0,0 +1,51 @@
+export type ToolCapabilityCategory = 'skill' | 'cli' | 'mcp' | 'browser' | 'desktop';
+export type ToolCapabilityStatus = 'installed' | 'missing';
+export interface ToolCatalogEntry {
+    id: string;
+    name: string;
+    category: ToolCapabilityCategory;
+    requiredFor: string[];
+    recommendedFor?: string[];
+    skillId?: string;
+    command?: string;
+    versionArgs?: string[];
+    envFlag?: string;
+    source?: string;
+    installHint?: string;
+    extraPaths?: (context: {
+        projectDir: string;
+        homeDir: string;
+    }) => string[];
+}
+export interface ToolCapabilityEntry extends ToolCatalogEntry {
+    installed: boolean;
+    status: ToolCapabilityStatus;
+    checkedPaths: string[];
+    detectedPath?: string;
+    version?: string;
+    missingReason?: string;
+}
+export interface ToolCapabilitySummary {
+    total: number;
+    installed: number;
+    missing: number;
+}
+export interface ToolCapabilityReport {
+    ok: boolean;
+    summary: ToolCapabilitySummary;
+    tools: ToolCapabilityEntry[];
+}
+export interface ToolCapabilityRegistryOptions {
+    projectDir?: string;
+    homeDir?: string;
+    toolIds?: string[];
+    env?: Record<string, string | undefined>;
+    commandExists?: (command: string) => boolean;
+    runVersion?: (command: string, args: string[]) => {
+        ok: boolean;
+        stdout?: string;
+        stderr?: string;
+    };
+}
+export declare const TOOL_CAPABILITY_CATALOG: ToolCatalogEntry[];
+export declare function inspectToolCapabilities(options?: ToolCapabilityRegistryOptions): ToolCapabilityReport;

package/dist/tools/ToolCapabilityRegistry.js

@@ -0,0 +1,295 @@
+import { execFileSync } from 'node:child_process';
+import { existsSync } from 'node:fs';
+import { homedir } from 'node:os';
+import { join, resolve } from 'node:path';
+import { runExternalCommandSync } from '../core/ExternalCommand.js';
+import { runGbrainCommandSync } from '../core/GbrainRuntime.js';
+import { wrapCliCommandWithRtk } from './RtkRuntime.js';
+export const TOOL_CAPABILITY_CATALOG = [
+    {
+        id: 'web-access',
+        name: 'Web Access',
+        category: 'skill',
+        skillId: 'web-access',
+        requiredFor: ['webResearch'],
+        recommendedFor: ['browserAutomation'],
+        source: 'https://github.com/eze-is/web-access',
+        installHint: 'npx skills add https://github.com/eze-is/web-access --skill web-access',
+    },
+    {
+        id: 'awesome-design-md',
+        name: 'Awesome Design.md',
+        category: 'skill',
+        skillId: 'awesome-design-md',
+        requiredFor: ['ui'],
+        source: 'https://github.com/VoltAgent/awesome-design-md',
+        installHint: 'scale setup --pack ui --include awesome-design-md --apply',
+        extraPaths: ({ homeDir }) => [join(homeDir, '.scale', 'vendor', 'awesome-design-md', 'README.md')],
+    },
+    {
+        id: 'ui-ux-pro-max',
+        name: 'UI/UX Pro Max',
+        category: 'skill',
+        skillId: 'ui-ux-pro-max',
+        requiredFor: ['ui'],
+        source: 'https://github.com/nextlevelbuilder/ui-ux-pro-max-skill',
+        installHint: 'scale setup --pack ui --include ui-ux-pro-max --apply',
+    },
+    {
+        id: 'frontend-design',
+        name: 'Frontend Design',
+        category: 'skill',
+        skillId: 'frontend-design',
+        requiredFor: [],
+        recommendedFor: ['ui'],
+        source: 'https://github.com/anthropics/skills/tree/main/skills/frontend-design',
+        installHint: 'npx skills add anthropics/skills --skill frontend-design',
+    },
+    {
+        id: 'rtk',
+        name: 'RTK',
+        category: 'cli',
+        command: 'rtk',
+        versionArgs: ['--version'],
+        requiredFor: ['externalCli'],
+        recommendedFor: ['review'],
+        source: 'https://github.com/rtk-ai/rtk',
+        installHint: 'cargo install --git https://github.com/rtk-ai/rtk && rtk init -g --codex',
+    },
+    {
+        id: 'gbrain',
+        name: 'GBrain',
+        category: 'cli',
+        command: 'gbrain',
+        versionArgs: ['--version'],
+        requiredFor: [],
+        recommendedFor: ['review'],
+        source: 'https://github.com/garrytan/gbrain',
+        installHint: 'scale bootstrap deps --pack memory --apply',
+    },
+    {
+        id: 'codegraph',
+        name: 'CodeGraph',
+        category: 'cli',
+        command: 'codegraph',
+        versionArgs: ['--version'],
+        requiredFor: [],
+        recommendedFor: ['review'],
+        source: 'https://github.com/colbymchenry/codegraph',
+        installHint: 'scale bootstrap deps --pack knowledge --apply',
+    },
+    {
+        id: 'graphify',
+        name: 'Graphify',
+        category: 'cli',
+        command: 'graphify',
+        versionArgs: ['--version'],
+        requiredFor: [],
+        recommendedFor: ['review'],
+        source: 'https://github.com/safishamsi/graphify',
+        installHint: 'scale bootstrap deps --pack knowledge --apply',
+    },
+    {
+        id: 'agent-browser',
+        name: 'Agent Browser',
+        category: 'browser',
+        command: 'agent-browser',
+        versionArgs: ['--version'],
+        requiredFor: ['browserAutomation'],
+        recommendedFor: ['ui', 'e2e'],
+        source: 'https://github.com/vercel-labs/agent-browser',
+        installHint: 'Install or configure Agent Browser from https://github.com/vercel-labs/agent-browser',
+    },
+    {
+        id: 'playwright',
+        name: 'Playwright',
+        category: 'browser',
+        command: 'npx',
+        versionArgs: ['playwright', '--version'],
+        requiredFor: ['e2e'],
+        recommendedFor: ['browserAutomation', 'ui'],
+        source: 'https://playwright.dev',
+        installHint: 'npx playwright install',
+    },
+    {
+        id: 'mcp-chrome-devtools',
+        name: 'Chrome DevTools MCP',
+        category: 'mcp',
+        envFlag: 'SCALE_MCP_CHROME_DEVTOOLS',
+        requiredFor: ['browserAutomation'],
+        recommendedFor: ['ui', 'e2e'],
+        source: 'https://github.com/ChromeDevTools/chrome-devtools-mcp',
+        installHint: 'Configure Chrome DevTools MCP for the active agent platform',
+    },
+    {
+        id: 'desktop-cua',
+        name: 'CUA',
+        category: 'desktop',
+        command: 'cua',
+        versionArgs: ['--version'],
+        requiredFor: ['desktopAutomation'],
+        source: 'https://github.com/trycua/cua',
+        installHint: 'Install or configure CUA from https://github.com/trycua/cua',
+    },
+    {
+        id: 'codex-cli',
+        name: 'Codex CLI',
+        category: 'cli',
+        command: 'codex',
+        versionArgs: ['--version'],
+        requiredFor: [],
+        recommendedFor: ['externalCli', 'review'],
+        source: 'https://github.com/openai/codex',
+        installHint: 'Install Codex CLI and verify with: codex --version',
+    },
+    {
+        id: 'gemini-cli',
+        name: 'Gemini CLI',
+        category: 'cli',
+        command: 'gemini',
+        versionArgs: ['--version'],
+        requiredFor: [],
+        recommendedFor: ['externalCli', 'review'],
+        source: 'https://github.com/google-gemini/gemini-cli',
+        installHint: 'Install Gemini CLI and verify with: gemini --version',
+    },
+    {
+        id: 'opencode-cli',
+        name: 'OpenCode CLI',
+        category: 'cli',
+        command: 'opencode',
+        versionArgs: ['--version'],
+        requiredFor: [],
+        recommendedFor: ['externalCli', 'review'],
+        source: 'https://github.com/sst/opencode',
+        installHint: 'Install OpenCode CLI and verify with: opencode --version',
+    },
+];
+export function inspectToolCapabilities(options = {}) {
+    const projectDir = resolve(options.projectDir ?? process.cwd());
+    const homeDir = options.homeDir ?? homedir();
+    const env = options.env ?? process.env;
+    const selected = new Set(options.toolIds ?? TOOL_CAPABILITY_CATALOG.map(tool => tool.id));
+    const tools = TOOL_CAPABILITY_CATALOG
+        .filter(tool => selected.has(tool.id))
+        .map(tool => inspectToolCapability(tool, {
+        projectDir,
+        homeDir,
+        env,
+        commandExists: options.commandExists ?? defaultCommandExists,
+        runVersion: options.runVersion ?? defaultRunVersion,
+    }));
+    const installed = tools.filter(tool => tool.installed).length;
+    const missing = tools.length - installed;
+    return {
+        ok: missing === 0,
+        summary: {
+            total: tools.length,
+            installed,
+            missing,
+        },
+        tools,
+    };
+}
+function inspectToolCapability(tool, deps) {
+    if (tool.category === 'skill')
+        return inspectSkillTool(tool, deps);
+    if (tool.category === 'cli' || tool.category === 'browser' || tool.category === 'desktop')
+        return inspectCliTool(tool, deps);
+    return inspectMcpTool(tool, deps);
+}
+function inspectSkillTool(tool, deps) {
+    const checkedPaths = [
+        ...skillCandidatePaths(tool.skillId ?? tool.id, deps.projectDir, deps.homeDir),
+        ...(tool.extraPaths?.({ projectDir: deps.projectDir, homeDir: deps.homeDir }) ?? []),
+    ];
+    const detectedPath = checkedPaths.find(path => existsSync(path));
+    return {
+        ...tool,
+        checkedPaths,
+        detectedPath,
+        installed: Boolean(detectedPath),
+        status: detectedPath ? 'installed' : 'missing',
+        missingReason: detectedPath ? undefined : 'SKILL.md was not found in project or user skill directories',
+    };
+}
+function inspectCliTool(tool, deps) {
+    const command = tool.command ?? tool.id;
+    const checkedPaths = [`PATH:${command}`];
+    if (!deps.commandExists(command)) {
+        return {
+            ...tool,
+            checkedPaths,
+            installed: false,
+            status: 'missing',
+            missingReason: `Command not found: ${command}`,
+        };
+    }
+    const version = deps.runVersion(command, tool.versionArgs ?? ['--version']);
+    return {
+        ...tool,
+        checkedPaths,
+        installed: version.ok,
+        status: version.ok ? 'installed' : 'missing',
+        version: version.ok ? (version.stdout ?? '').trim() : undefined,
+        missingReason: version.ok ? undefined : version.stderr ?? 'Version command failed',
+    };
+}
+function inspectMcpTool(tool, deps) {
+    const envFlag = tool.envFlag ?? `SCALE_MCP_${tool.id.toUpperCase().replace(/[^A-Z0-9]/g, '_')}`;
+    const installed = truthy(deps.env[envFlag]);
+    return {
+        ...tool,
+        checkedPaths: [`env:${envFlag}`],
+        installed,
+        status: installed ? 'installed' : 'missing',
+        missingReason: installed ? undefined : `MCP availability flag is not set: ${envFlag}`,
+    };
+}
+function skillCandidatePaths(skillId, projectDir, homeDir) {
+    return [
+        join(projectDir, '.agents', 'skills', skillId, 'SKILL.md'),
+        join(projectDir, '.codex', 'skills', skillId, 'SKILL.md'),
+        join(projectDir, '.claude', 'skills', skillId, 'SKILL.md'),
+        join(homeDir, '.agents', 'skills', skillId, 'SKILL.md'),
+        join(homeDir, '.codex', 'skills', skillId, 'SKILL.md'),
+        join(homeDir, '.claude', 'skills', skillId, 'SKILL.md'),
+    ];
+}
+function defaultCommandExists(command) {
+    try {
+        execFileSync(process.platform === 'win32' ? 'where.exe' : 'which', [command], { stdio: 'ignore' });
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+function defaultRunVersion(command, args) {
+    if (command === 'gbrain') {
+        const result = runGbrainCommandSync(args, {
+            timeout: 5000,
+            env: process.env,
+        });
+        return result.exitCode === 0
+            ? { ok: true, stdout: result.stdout || result.stderr }
+            : { ok: false, stdout: result.stdout, stderr: result.stderr || `gbrain command failed with exit code ${result.exitCode}` };
+    }
+    try {
+        const invocation = wrapCliCommandWithRtk(command, args, defaultCommandExists);
+        const stdout = runExternalCommandSync(invocation.command, invocation.args, { encoding: 'utf-8', timeout: 5000, stdio: ['ignore', 'pipe', 'pipe'] });
+        return { ok: true, stdout: String(stdout) };
+    }
+    catch (error) {
+        return {
+            ok: false,
+            stderr: error instanceof Error ? error.message : String(error),
+        };
+    }
+}
+function truthy(value) {
+    if (!value)
+        return false;
+    return ['1', 'true', 'yes', 'on', 'enabled'].includes(value.toLowerCase());
+}
+//# sourceMappingURL=ToolCapabilityRegistry.js.map

package/dist/tools/ToolCapabilityRegistry.js.map

@@ -0,0 +1 @@
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package/dist/tools/ToolEvidenceGate.d.ts

@@ -0,0 +1,39 @@
+import { ToolEvidenceStore, type ToolEvidenceAdapter, type ToolEvidenceStatus } from './ToolEvidenceStore.js';
+import type { ToolExecutionPlan } from './ToolOrchestrator.js';
+import type { ToolOrchestrationMode } from './ToolPolicy.js';
+export type ToolEvidenceGateTaskLevel = 'S' | 'M' | 'L' | 'CRITICAL';
+export interface ToolEvidenceGateItem {
+    toolId: string;
+    domain: string;
+    adapter: ToolEvidenceAdapter;
+    required: boolean;
+    reason: string;
+    evidenceId?: string;
+    evidenceStatus?: ToolEvidenceStatus;
+    completedAt?: string;
+}
+export interface ToolEvidenceGateResult {
+    taskId?: string;
+    mode: ToolOrchestrationMode;
+    enforceLevels: ToolEvidenceGateTaskLevel[];
+    applies: boolean;
+    checked: boolean;
+    complete: boolean;
+    blocked: boolean;
+    requiredTools: string[];
+    passed: ToolEvidenceGateItem[];
+    missing: ToolEvidenceGateItem[];
+    failed: ToolEvidenceGateItem[];
+    skipped: ToolEvidenceGateItem[];
+    warnings: string[];
+}
+export interface EvaluateToolEvidenceGateOptions {
+    projectDir?: string;
+    level: ToolEvidenceGateTaskLevel;
+    plan?: ToolExecutionPlan | null;
+    evidenceStore?: ToolEvidenceStore;
+    mode?: ToolOrchestrationMode;
+    enforceLevels?: ToolEvidenceGateTaskLevel[];
+    allowSkipped?: boolean;
+}
+export declare function evaluateToolEvidenceGate(options: EvaluateToolEvidenceGateOptions): ToolEvidenceGateResult;

package/dist/tools/ToolEvidenceGate.js

@@ -0,0 +1,117 @@
+import { ToolEvidenceStore } from './ToolEvidenceStore.js';
+export function evaluateToolEvidenceGate(options) {
+    const mode = options.mode ?? options.plan?.mode ?? 'evidence-required';
+    const enforceLevels = options.enforceLevels ?? ['M', 'L', 'CRITICAL'];
+    const applies = mode !== 'off' && enforceLevels.includes(options.level);
+    if (!applies) {
+        return {
+            taskId: options.plan?.taskId,
+            mode,
+            enforceLevels,
+            applies,
+            checked: false,
+            complete: true,
+            blocked: false,
+            requiredTools: [],
+            passed: [],
+            missing: [],
+            failed: [],
+            skipped: [],
+            warnings: [],
+        };
+    }
+    if (!options.plan) {
+        return {
+            mode,
+            enforceLevels,
+            applies,
+            checked: true,
+            complete: false,
+            blocked: blocksOnIncomplete(mode),
+            requiredTools: [],
+            passed: [],
+            missing: [],
+            failed: [],
+            skipped: [],
+            warnings: ['No tool execution plan was provided.'],
+        };
+    }
+    const requiredSteps = options.plan.steps.filter(step => step.required);
+    const evidenceStore = options.evidenceStore ?? new ToolEvidenceStore({ projectDir: options.projectDir });
+    const latestEvidence = latestEvidenceByTool(evidenceStore.list(options.plan.taskId));
+    const passed = [];
+    const missing = [];
+    const failed = [];
+    const skipped = [];
+    for (const step of requiredSteps) {
+        const evidence = latestEvidence.get(step.toolId);
+        const item = evidenceItem(step, evidence);
+        if (!evidence) {
+            missing.push({
+                ...item,
+                reason: step.status === 'missing'
+                    ? step.reason
+                    : 'No execution evidence was recorded for this required tool.',
+            });
+            continue;
+        }
+        if (evidence.status === 'passed') {
+            passed.push(item);
+            continue;
+        }
+        if (evidence.status === 'failed') {
+            failed.push(item);
+            continue;
+        }
+        if (evidence.status === 'skipped' && options.allowSkipped) {
+            passed.push(item);
+        }
+        else {
+            skipped.push({
+                ...item,
+                reason: 'Skipped or dry-run evidence does not satisfy required tool execution.',
+            });
+        }
+    }
+    const complete = missing.length === 0 && failed.length === 0 && skipped.length === 0;
+    const blocked = blocksOnIncomplete(mode) && !complete;
+    return {
+        taskId: options.plan.taskId,
+        mode,
+        enforceLevels,
+        applies,
+        checked: true,
+        complete,
+        blocked,
+        requiredTools: requiredSteps.map(step => step.toolId),
+        passed,
+        missing,
+        failed,
+        skipped,
+        warnings: options.plan.warnings,
+    };
+}
+function latestEvidenceByTool(records) {
+    const byTool = new Map();
+    for (const record of records) {
+        if (!byTool.has(record.tool))
+            byTool.set(record.tool, record);
+    }
+    return byTool;
+}
+function evidenceItem(step, evidence) {
+    return {
+        toolId: step.toolId,
+        domain: step.domain,
+        adapter: step.adapter,
+        required: step.required,
+        reason: evidence?.outputSummary ?? step.reason,
+        evidenceId: evidence?.id,
+        evidenceStatus: evidence?.status,
+        completedAt: evidence?.completedAt,
+    };
+}
+function blocksOnIncomplete(mode) {
+    return mode === 'evidence-required' || mode === 'block';
+}
+//# sourceMappingURL=ToolEvidenceGate.js.map

package/dist/tools/ToolEvidenceGate.js.map

@@ -0,0 +1 @@
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package/dist/tools/ToolEvidenceStore.d.ts

@@ -0,0 +1,58 @@
+export type ToolEvidenceAdapter = 'skill' | 'mcp' | 'cli' | 'browser' | 'desktop';
+export type ToolEvidenceStatus = 'passed' | 'failed' | 'skipped';
+export interface ToolRunEvidenceInput {
+    taskId: string;
+    domain: string;
+    tool: string;
+    adapter: ToolEvidenceAdapter;
+    version?: string;
+    command?: string;
+    mcpToolName?: string;
+    status: ToolEvidenceStatus;
+    sanitizedInput: Record<string, unknown>;
+    outputSummary: string;
+    outputPaths: string[];
+    safetyPolicy: string[];
+}
+export interface ToolRunEvidence extends ToolRunEvidenceInput {
+    id: string;
+    startedAt: string;
+    completedAt: string;
+    exitCode?: number;
+    redactionApplied: boolean;
+    sequence: number;
+}
+export interface ToolEvidenceStoreOptions {
+    projectDir?: string;
+    scaleDir?: string;
+    now?: () => Date;
+}
+export interface ToolEvidenceSummary {
+    taskId: string;
+    total: number;
+    passed: number;
+    failed: number;
+    skipped: number;
+    ok: boolean;
+}
+export declare class ToolEvidenceStore {
+    private rootDir;
+    private now;
+    private sequence;
+    constructor(options?: ToolEvidenceStoreOptions);
+    save(input: ToolRunEvidenceInput & {
+        exitCode?: number;
+    }): ToolRunEvidence;
+    list(taskId: string): ToolRunEvidence[];
+    get(taskId: string, id: string): ToolRunEvidence | null;
+    summary(taskId: string): ToolEvidenceSummary;
+    private taskDir;
+}
+export declare function redactEvidenceValue(value: unknown): {
+    value: unknown;
+    redacted: boolean;
+};
+export declare function redactEvidenceText(text: string): {
+    value: string;
+    redacted: boolean;
+};