@hongmaple0820/med-scale-research-os 0.43.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1104) hide show
  1. package/.scale/mcp-servers.yaml +144 -0
  2. package/.scale/skills.json +830 -0
  3. package/.scale/verification.json +52 -0
  4. package/LICENSE +15 -0
  5. package/README.en.md +156 -0
  6. package/README.md +156 -0
  7. package/dist/adapters/AiderAdapter.d.ts +22 -0
  8. package/dist/adapters/AiderAdapter.js +262 -0
  9. package/dist/adapters/AiderAdapter.js.map +1 -0
  10. package/dist/adapters/AntigravityAdapter.d.ts +4 -0
  11. package/dist/adapters/AntigravityAdapter.js +21 -0
  12. package/dist/adapters/AntigravityAdapter.js.map +1 -0
  13. package/dist/adapters/ClaudeCodeAdapter.d.ts +54 -0
  14. package/dist/adapters/ClaudeCodeAdapter.js +185 -0
  15. package/dist/adapters/ClaudeCodeAdapter.js.map +1 -0
  16. package/dist/adapters/ClineAdapter.d.ts +4 -0
  17. package/dist/adapters/ClineAdapter.js +20 -0
  18. package/dist/adapters/ClineAdapter.js.map +1 -0
  19. package/dist/adapters/CodexAdapter.d.ts +15 -0
  20. package/dist/adapters/CodexAdapter.js +160 -0
  21. package/dist/adapters/CodexAdapter.js.map +1 -0
  22. package/dist/adapters/CursorAdapter.d.ts +14 -0
  23. package/dist/adapters/CursorAdapter.js +171 -0
  24. package/dist/adapters/CursorAdapter.js.map +1 -0
  25. package/dist/adapters/DeepSeekTuiAdapter.d.ts +19 -0
  26. package/dist/adapters/DeepSeekTuiAdapter.js +263 -0
  27. package/dist/adapters/DeepSeekTuiAdapter.js.map +1 -0
  28. package/dist/adapters/DoubaoAdapter.d.ts +14 -0
  29. package/dist/adapters/DoubaoAdapter.js +184 -0
  30. package/dist/adapters/DoubaoAdapter.js.map +1 -0
  31. package/dist/adapters/GeminiAdapter.d.ts +14 -0
  32. package/dist/adapters/GeminiAdapter.js +163 -0
  33. package/dist/adapters/GeminiAdapter.js.map +1 -0
  34. package/dist/adapters/GenericProjectAgentAdapter.d.ts +29 -0
  35. package/dist/adapters/GenericProjectAgentAdapter.js +204 -0
  36. package/dist/adapters/GenericProjectAgentAdapter.js.map +1 -0
  37. package/dist/adapters/HermesAdapter.d.ts +14 -0
  38. package/dist/adapters/HermesAdapter.js +163 -0
  39. package/dist/adapters/HermesAdapter.js.map +1 -0
  40. package/dist/adapters/JCodeAdapter.d.ts +4 -0
  41. package/dist/adapters/JCodeAdapter.js +19 -0
  42. package/dist/adapters/JCodeAdapter.js.map +1 -0
  43. package/dist/adapters/KiloCodeAdapter.d.ts +4 -0
  44. package/dist/adapters/KiloCodeAdapter.js +20 -0
  45. package/dist/adapters/KiloCodeAdapter.js.map +1 -0
  46. package/dist/adapters/KimiAdapter.d.ts +14 -0
  47. package/dist/adapters/KimiAdapter.js +183 -0
  48. package/dist/adapters/KimiAdapter.js.map +1 -0
  49. package/dist/adapters/KiroAdapter.d.ts +14 -0
  50. package/dist/adapters/KiroAdapter.js +180 -0
  51. package/dist/adapters/KiroAdapter.js.map +1 -0
  52. package/dist/adapters/OpenClawAdapter.d.ts +14 -0
  53. package/dist/adapters/OpenClawAdapter.js +163 -0
  54. package/dist/adapters/OpenClawAdapter.js.map +1 -0
  55. package/dist/adapters/OpenCodeAdapter.d.ts +14 -0
  56. package/dist/adapters/OpenCodeAdapter.js +172 -0
  57. package/dist/adapters/OpenCodeAdapter.js.map +1 -0
  58. package/dist/adapters/QCoderAdapter.d.ts +14 -0
  59. package/dist/adapters/QCoderAdapter.js +159 -0
  60. package/dist/adapters/QCoderAdapter.js.map +1 -0
  61. package/dist/adapters/QoderAdapter.d.ts +4 -0
  62. package/dist/adapters/QoderAdapter.js +21 -0
  63. package/dist/adapters/QoderAdapter.js.map +1 -0
  64. package/dist/adapters/TraeAdapter.d.ts +14 -0
  65. package/dist/adapters/TraeAdapter.js +159 -0
  66. package/dist/adapters/TraeAdapter.js.map +1 -0
  67. package/dist/adapters/VSCAdapter.d.ts +14 -0
  68. package/dist/adapters/VSCAdapter.js +159 -0
  69. package/dist/adapters/VSCAdapter.js.map +1 -0
  70. package/dist/adapters/WindsurfAdapter.d.ts +14 -0
  71. package/dist/adapters/WindsurfAdapter.js +185 -0
  72. package/dist/adapters/WindsurfAdapter.js.map +1 -0
  73. package/dist/adapters/WorkBuddyAdapter.d.ts +14 -0
  74. package/dist/adapters/WorkBuddyAdapter.js +159 -0
  75. package/dist/adapters/WorkBuddyAdapter.js.map +1 -0
  76. package/dist/adapters/index.d.ts +32 -0
  77. package/dist/adapters/index.js +87 -0
  78. package/dist/adapters/index.js.map +1 -0
  79. package/dist/agents/AgentChannel.d.ts +43 -0
  80. package/dist/agents/AgentChannel.js +136 -0
  81. package/dist/agents/AgentChannel.js.map +1 -0
  82. package/dist/agents/AgentCoordinator.d.ts +29 -0
  83. package/dist/agents/AgentCoordinator.js +136 -0
  84. package/dist/agents/AgentCoordinator.js.map +1 -0
  85. package/dist/agents/AgentDispatcher.d.ts +24 -0
  86. package/dist/agents/AgentDispatcher.js +112 -0
  87. package/dist/agents/AgentDispatcher.js.map +1 -0
  88. package/dist/agents/AgentManager.d.ts +14 -0
  89. package/dist/agents/AgentManager.js +85 -0
  90. package/dist/agents/AgentManager.js.map +1 -0
  91. package/dist/agents/AgentPool.d.ts +59 -0
  92. package/dist/agents/AgentPool.js +192 -0
  93. package/dist/agents/AgentPool.js.map +1 -0
  94. package/dist/agents/AgentRegistry.d.ts +20 -0
  95. package/dist/agents/AgentRegistry.js +36 -0
  96. package/dist/agents/AgentRegistry.js.map +1 -0
  97. package/dist/agents/AgentSourceLoader.d.ts +73 -0
  98. package/dist/agents/AgentSourceLoader.js +103 -0
  99. package/dist/agents/AgentSourceLoader.js.map +1 -0
  100. package/dist/agents/IAgent.d.ts +53 -0
  101. package/dist/agents/IAgent.js +4 -0
  102. package/dist/agents/IAgent.js.map +1 -0
  103. package/dist/agents/LeadershipPresets.d.ts +16 -0
  104. package/dist/agents/LeadershipPresets.js +152 -0
  105. package/dist/agents/LeadershipPresets.js.map +1 -0
  106. package/dist/agents/definitions/debugger.d.ts +2 -0
  107. package/dist/agents/definitions/debugger.js +6 -0
  108. package/dist/agents/definitions/debugger.js.map +1 -0
  109. package/dist/agents/definitions/doc-writer.d.ts +2 -0
  110. package/dist/agents/definitions/doc-writer.js +6 -0
  111. package/dist/agents/definitions/doc-writer.js.map +1 -0
  112. package/dist/agents/definitions/implementer.d.ts +2 -0
  113. package/dist/agents/definitions/implementer.js +6 -0
  114. package/dist/agents/definitions/implementer.js.map +1 -0
  115. package/dist/agents/definitions/planner.d.ts +2 -0
  116. package/dist/agents/definitions/planner.js +6 -0
  117. package/dist/agents/definitions/planner.js.map +1 -0
  118. package/dist/agents/definitions/researcher.d.ts +2 -0
  119. package/dist/agents/definitions/researcher.js +6 -0
  120. package/dist/agents/definitions/researcher.js.map +1 -0
  121. package/dist/agents/definitions/reviewer.d.ts +2 -0
  122. package/dist/agents/definitions/reviewer.js +6 -0
  123. package/dist/agents/definitions/reviewer.js.map +1 -0
  124. package/dist/agents/definitions/security.d.ts +2 -0
  125. package/dist/agents/definitions/security.js +6 -0
  126. package/dist/agents/definitions/security.js.map +1 -0
  127. package/dist/agents/definitions/tester.d.ts +2 -0
  128. package/dist/agents/definitions/tester.js +6 -0
  129. package/dist/agents/definitions/tester.js.map +1 -0
  130. package/dist/agents/index.d.ts +23 -0
  131. package/dist/agents/index.js +44 -0
  132. package/dist/agents/index.js.map +1 -0
  133. package/dist/agents/profiles.d.ts +26 -0
  134. package/dist/agents/profiles.js +197 -0
  135. package/dist/agents/profiles.js.map +1 -0
  136. package/dist/agents/types.d.ts +262 -0
  137. package/dist/agents/types.js +4 -0
  138. package/dist/agents/types.js.map +1 -0
  139. package/dist/api/cli.d.ts +2 -0
  140. package/dist/api/cli.js +6678 -0
  141. package/dist/api/cli.js.map +1 -0
  142. package/dist/api/doctor.d.ts +83 -0
  143. package/dist/api/doctor.js +982 -0
  144. package/dist/api/doctor.js.map +1 -0
  145. package/dist/api/mcp.d.ts +32 -0
  146. package/dist/api/mcp.js +223 -0
  147. package/dist/api/mcp.js.map +1 -0
  148. package/dist/api/medscale.d.ts +2 -0
  149. package/dist/api/medscale.js +20 -0
  150. package/dist/api/medscale.js.map +1 -0
  151. package/dist/api/quickstart.d.ts +86 -0
  152. package/dist/api/quickstart.js +291 -0
  153. package/dist/api/quickstart.js.map +1 -0
  154. package/dist/artifact/fsm.d.ts +41 -0
  155. package/dist/artifact/fsm.js +221 -0
  156. package/dist/artifact/fsm.js.map +1 -0
  157. package/dist/artifact/fsmDefinitions.d.ts +18 -0
  158. package/dist/artifact/fsmDefinitions.js +296 -0
  159. package/dist/artifact/fsmDefinitions.js.map +1 -0
  160. package/dist/artifact/sqliteStore.d.ts +61 -0
  161. package/dist/artifact/sqliteStore.js +381 -0
  162. package/dist/artifact/sqliteStore.js.map +1 -0
  163. package/dist/artifact/store.d.ts +49 -0
  164. package/dist/artifact/store.js +116 -0
  165. package/dist/artifact/store.js.map +1 -0
  166. package/dist/artifact/types.d.ts +535 -0
  167. package/dist/artifact/types.js +74 -0
  168. package/dist/artifact/types.js.map +1 -0
  169. package/dist/bootstrap/DependencyBootstrap.d.ts +112 -0
  170. package/dist/bootstrap/DependencyBootstrap.js +1046 -0
  171. package/dist/bootstrap/DependencyBootstrap.js.map +1 -0
  172. package/dist/bootstrap/DependencyBootstrapRenderer.d.ts +3 -0
  173. package/dist/bootstrap/DependencyBootstrapRenderer.js +138 -0
  174. package/dist/bootstrap/DependencyBootstrapRenderer.js.map +1 -0
  175. package/dist/bridge/PythonBridge.d.ts +80 -0
  176. package/dist/bridge/PythonBridge.js +437 -0
  177. package/dist/bridge/PythonBridge.js.map +1 -0
  178. package/dist/bridge/index.d.ts +2 -0
  179. package/dist/bridge/index.js +7 -0
  180. package/dist/bridge/index.js.map +1 -0
  181. package/dist/bridge/medicalWorkflows.d.ts +29 -0
  182. package/dist/bridge/medicalWorkflows.js +156 -0
  183. package/dist/bridge/medicalWorkflows.js.map +1 -0
  184. package/dist/bridge/types.d.ts +381 -0
  185. package/dist/bridge/types.js +113 -0
  186. package/dist/bridge/types.js.map +1 -0
  187. package/dist/cache/ScanCache.d.ts +41 -0
  188. package/dist/cache/ScanCache.js +120 -0
  189. package/dist/cache/ScanCache.js.map +1 -0
  190. package/dist/capabilities/BrowserCapability.d.ts +30 -0
  191. package/dist/capabilities/BrowserCapability.js +73 -0
  192. package/dist/capabilities/BrowserCapability.js.map +1 -0
  193. package/dist/capabilities/BrowserQACapability.d.ts +165 -0
  194. package/dist/capabilities/BrowserQACapability.js +438 -0
  195. package/dist/capabilities/BrowserQACapability.js.map +1 -0
  196. package/dist/capabilities/CapabilityRegistry.d.ts +17 -0
  197. package/dist/capabilities/CapabilityRegistry.js +65 -0
  198. package/dist/capabilities/CapabilityRegistry.js.map +1 -0
  199. package/dist/capabilities/ComputerCapability.d.ts +28 -0
  200. package/dist/capabilities/ComputerCapability.js +40 -0
  201. package/dist/capabilities/ComputerCapability.js.map +1 -0
  202. package/dist/capabilities/InstalledSkillsIntegration.d.ts +69 -0
  203. package/dist/capabilities/InstalledSkillsIntegration.js +240 -0
  204. package/dist/capabilities/InstalledSkillsIntegration.js.map +1 -0
  205. package/dist/capabilities/SearchCapability.d.ts +46 -0
  206. package/dist/capabilities/SearchCapability.js +88 -0
  207. package/dist/capabilities/SearchCapability.js.map +1 -0
  208. package/dist/capabilities/index.d.ts +6 -0
  209. package/dist/capabilities/index.js +9 -0
  210. package/dist/capabilities/index.js.map +1 -0
  211. package/dist/capabilities/types.d.ts +92 -0
  212. package/dist/capabilities/types.js +7 -0
  213. package/dist/capabilities/types.js.map +1 -0
  214. package/dist/cli/autofixCommands.d.ts +22 -0
  215. package/dist/cli/autofixCommands.js +32 -0
  216. package/dist/cli/autofixCommands.js.map +1 -0
  217. package/dist/cli/cortexCommands.d.ts +71 -0
  218. package/dist/cli/cortexCommands.js +335 -0
  219. package/dist/cli/cortexCommands.js.map +1 -0
  220. package/dist/cli/costCommands.d.ts +13 -0
  221. package/dist/cli/costCommands.js +48 -0
  222. package/dist/cli/costCommands.js.map +1 -0
  223. package/dist/cli/evolutionCommands.d.ts +112 -0
  224. package/dist/cli/evolutionCommands.js +246 -0
  225. package/dist/cli/evolutionCommands.js.map +1 -0
  226. package/dist/cli/gateStatusCommands.d.ts +1 -0
  227. package/dist/cli/gateStatusCommands.js +52 -0
  228. package/dist/cli/gateStatusCommands.js.map +1 -0
  229. package/dist/cli/liteCommands.d.ts +81 -0
  230. package/dist/cli/liteCommands.js +148 -0
  231. package/dist/cli/liteCommands.js.map +1 -0
  232. package/dist/cli/orchCommands.d.ts +43 -0
  233. package/dist/cli/orchCommands.js +135 -0
  234. package/dist/cli/orchCommands.js.map +1 -0
  235. package/dist/cli/phaseCommands.d.ts +248 -0
  236. package/dist/cli/phaseCommands.js +1878 -0
  237. package/dist/cli/phaseCommands.js.map +1 -0
  238. package/dist/cli/promptCommands.d.ts +1 -0
  239. package/dist/cli/promptCommands.js +57 -0
  240. package/dist/cli/promptCommands.js.map +1 -0
  241. package/dist/cli/qaCommands.d.ts +22 -0
  242. package/dist/cli/qaCommands.js +84 -0
  243. package/dist/cli/qaCommands.js.map +1 -0
  244. package/dist/cli/quickstartCommands.d.ts +17 -0
  245. package/dist/cli/quickstartCommands.js +47 -0
  246. package/dist/cli/quickstartCommands.js.map +1 -0
  247. package/dist/cli/runCommand.d.ts +39 -0
  248. package/dist/cli/runCommand.js +113 -0
  249. package/dist/cli/runCommand.js.map +1 -0
  250. package/dist/cli/scoreCommands.d.ts +1 -0
  251. package/dist/cli/scoreCommands.js +112 -0
  252. package/dist/cli/scoreCommands.js.map +1 -0
  253. package/dist/cli/shieldCommands.d.ts +30 -0
  254. package/dist/cli/shieldCommands.js +212 -0
  255. package/dist/cli/shieldCommands.js.map +1 -0
  256. package/dist/cli/targetCommands.d.ts +552 -0
  257. package/dist/cli/targetCommands.js +3173 -0
  258. package/dist/cli/targetCommands.js.map +1 -0
  259. package/dist/cli/tuiCommands.d.ts +7 -0
  260. package/dist/cli/tuiCommands.js +33 -0
  261. package/dist/cli/tuiCommands.js.map +1 -0
  262. package/dist/cli/vibeCommands.d.ts +64 -0
  263. package/dist/cli/vibeCommands.js +221 -0
  264. package/dist/cli/vibeCommands.js.map +1 -0
  265. package/dist/codegraph/CodeIntelligence.d.ts +147 -0
  266. package/dist/codegraph/CodeIntelligence.js +681 -0
  267. package/dist/codegraph/CodeIntelligence.js.map +1 -0
  268. package/dist/config/profiles.d.ts +64 -0
  269. package/dist/config/profiles.js +223 -0
  270. package/dist/config/profiles.js.map +1 -0
  271. package/dist/context/AntiPatternRegistry.d.ts +38 -0
  272. package/dist/context/AntiPatternRegistry.js +203 -0
  273. package/dist/context/AntiPatternRegistry.js.map +1 -0
  274. package/dist/context/CavemanCompressor.d.ts +20 -0
  275. package/dist/context/CavemanCompressor.js +14 -0
  276. package/dist/context/CavemanCompressor.js.map +1 -0
  277. package/dist/context/ContextBudget.d.ts +128 -0
  278. package/dist/context/ContextBudget.js +423 -0
  279. package/dist/context/ContextBudget.js.map +1 -0
  280. package/dist/context/ContextBuilder.d.ts +71 -0
  281. package/dist/context/ContextBuilder.js +372 -0
  282. package/dist/context/ContextBuilder.js.map +1 -0
  283. package/dist/context/ContextCompiler.d.ts +34 -0
  284. package/dist/context/ContextCompiler.js +120 -0
  285. package/dist/context/ContextCompiler.js.map +1 -0
  286. package/dist/context/ProjectAnatomy.d.ts +18 -0
  287. package/dist/context/ProjectAnatomy.js +287 -0
  288. package/dist/context/ProjectAnatomy.js.map +1 -0
  289. package/dist/context/SessionStartSequence.d.ts +54 -0
  290. package/dist/context/SessionStartSequence.js +162 -0
  291. package/dist/context/SessionStartSequence.js.map +1 -0
  292. package/dist/core/ExternalCommand.d.ts +9 -0
  293. package/dist/core/ExternalCommand.js +70 -0
  294. package/dist/core/ExternalCommand.js.map +1 -0
  295. package/dist/core/GbrainRuntime.d.ts +25 -0
  296. package/dist/core/GbrainRuntime.js +270 -0
  297. package/dist/core/GbrainRuntime.js.map +1 -0
  298. package/dist/core/container.d.ts +14 -0
  299. package/dist/core/container.js +35 -0
  300. package/dist/core/container.js.map +1 -0
  301. package/dist/core/eventBus.d.ts +60 -0
  302. package/dist/core/eventBus.js +157 -0
  303. package/dist/core/eventBus.js.map +1 -0
  304. package/dist/core/logger.d.ts +5 -0
  305. package/dist/core/logger.js +51 -0
  306. package/dist/core/logger.js.map +1 -0
  307. package/dist/cortex/GovernanceMetrics.d.ts +66 -0
  308. package/dist/cortex/GovernanceMetrics.js +230 -0
  309. package/dist/cortex/GovernanceMetrics.js.map +1 -0
  310. package/dist/cortex/InstinctExtractor.d.ts +61 -0
  311. package/dist/cortex/InstinctExtractor.js +184 -0
  312. package/dist/cortex/InstinctExtractor.js.map +1 -0
  313. package/dist/cortex/InstinctStore.d.ts +54 -0
  314. package/dist/cortex/InstinctStore.js +266 -0
  315. package/dist/cortex/InstinctStore.js.map +1 -0
  316. package/dist/cortex/ReflexionEngine.d.ts +34 -0
  317. package/dist/cortex/ReflexionEngine.js +157 -0
  318. package/dist/cortex/ReflexionEngine.js.map +1 -0
  319. package/dist/cortex/SessionInjector.d.ts +44 -0
  320. package/dist/cortex/SessionInjector.js +127 -0
  321. package/dist/cortex/SessionInjector.js.map +1 -0
  322. package/dist/cortex/adapters/ClaudeAdapter.d.ts +17 -0
  323. package/dist/cortex/adapters/ClaudeAdapter.js +61 -0
  324. package/dist/cortex/adapters/ClaudeAdapter.js.map +1 -0
  325. package/dist/cortex/adapters/CodexAdapter.d.ts +10 -0
  326. package/dist/cortex/adapters/CodexAdapter.js +52 -0
  327. package/dist/cortex/adapters/CodexAdapter.js.map +1 -0
  328. package/dist/cortex/adapters/CursorAdapter.d.ts +10 -0
  329. package/dist/cortex/adapters/CursorAdapter.js +46 -0
  330. package/dist/cortex/adapters/CursorAdapter.js.map +1 -0
  331. package/dist/cortex/adapters/GeminiAdapter.d.ts +11 -0
  332. package/dist/cortex/adapters/GeminiAdapter.js +48 -0
  333. package/dist/cortex/adapters/GeminiAdapter.js.map +1 -0
  334. package/dist/dashboard/DashboardServer.d.ts +86 -0
  335. package/dist/dashboard/DashboardServer.js +380 -0
  336. package/dist/dashboard/DashboardServer.js.map +1 -0
  337. package/dist/dashboard/MedicalWorkflowData.d.ts +155 -0
  338. package/dist/dashboard/MedicalWorkflowData.js +664 -0
  339. package/dist/dashboard/MedicalWorkflowData.js.map +1 -0
  340. package/dist/dashboard/MetricsAggregator.d.ts +38 -0
  341. package/dist/dashboard/MetricsAggregator.js +99 -0
  342. package/dist/dashboard/MetricsAggregator.js.map +1 -0
  343. package/dist/dashboard/index.d.ts +4 -0
  344. package/dist/dashboard/index.js +3 -0
  345. package/dist/dashboard/index.js.map +1 -0
  346. package/dist/dashboard/server.d.ts +52 -0
  347. package/dist/dashboard/server.js +84 -0
  348. package/dist/dashboard/server.js.map +1 -0
  349. package/dist/env/EnvironmentDoctor.d.ts +66 -0
  350. package/dist/env/EnvironmentDoctor.js +581 -0
  351. package/dist/env/EnvironmentDoctor.js.map +1 -0
  352. package/dist/eval/BenchmarkPublisher.d.ts +25 -0
  353. package/dist/eval/BenchmarkPublisher.js +27 -0
  354. package/dist/eval/BenchmarkPublisher.js.map +1 -0
  355. package/dist/eval/WorkflowEval.d.ts +161 -0
  356. package/dist/eval/WorkflowEval.js +377 -0
  357. package/dist/eval/WorkflowEval.js.map +1 -0
  358. package/dist/evolution/AutoDefectCreator.d.ts +43 -0
  359. package/dist/evolution/AutoDefectCreator.js +157 -0
  360. package/dist/evolution/AutoDefectCreator.js.map +1 -0
  361. package/dist/evolution/BehaviorTracker.d.ts +46 -0
  362. package/dist/evolution/BehaviorTracker.js +67 -0
  363. package/dist/evolution/BehaviorTracker.js.map +1 -0
  364. package/dist/evolution/EvolutionEngine.d.ts +102 -0
  365. package/dist/evolution/EvolutionEngine.js +326 -0
  366. package/dist/evolution/EvolutionEngine.js.map +1 -0
  367. package/dist/evolution/EvolutionEvaluator.d.ts +61 -0
  368. package/dist/evolution/EvolutionEvaluator.js +118 -0
  369. package/dist/evolution/EvolutionEvaluator.js.map +1 -0
  370. package/dist/evolution/LessonValidator.d.ts +36 -0
  371. package/dist/evolution/LessonValidator.js +132 -0
  372. package/dist/evolution/LessonValidator.js.map +1 -0
  373. package/dist/evolution/PatternExtractor.d.ts +40 -0
  374. package/dist/evolution/PatternExtractor.js +83 -0
  375. package/dist/evolution/PatternExtractor.js.map +1 -0
  376. package/dist/evolution/RuleMaturity.d.ts +39 -0
  377. package/dist/evolution/RuleMaturity.js +70 -0
  378. package/dist/evolution/RuleMaturity.js.map +1 -0
  379. package/dist/evolution/SessionLearnings.d.ts +70 -0
  380. package/dist/evolution/SessionLearnings.js +217 -0
  381. package/dist/evolution/SessionLearnings.js.map +1 -0
  382. package/dist/evolution/SkillCreator.d.ts +75 -0
  383. package/dist/evolution/SkillCreator.js +219 -0
  384. package/dist/evolution/SkillCreator.js.map +1 -0
  385. package/dist/fsm/FSMAgentBridge.d.ts +59 -0
  386. package/dist/fsm/FSMAgentBridge.js +193 -0
  387. package/dist/fsm/FSMAgentBridge.js.map +1 -0
  388. package/dist/fsm/index.d.ts +2 -0
  389. package/dist/fsm/index.js +3 -0
  390. package/dist/fsm/index.js.map +1 -0
  391. package/dist/governance/GovernanceRoi.d.ts +30 -0
  392. package/dist/governance/GovernanceRoi.js +102 -0
  393. package/dist/governance/GovernanceRoi.js.map +1 -0
  394. package/dist/governance/ProgressiveGovernance.d.ts +22 -0
  395. package/dist/governance/ProgressiveGovernance.js +159 -0
  396. package/dist/governance/ProgressiveGovernance.js.map +1 -0
  397. package/dist/guardrails/ActiveRedTeam.d.ts +46 -0
  398. package/dist/guardrails/ActiveRedTeam.js +203 -0
  399. package/dist/guardrails/ActiveRedTeam.js.map +1 -0
  400. package/dist/guardrails/DependencyAuditor.d.ts +68 -0
  401. package/dist/guardrails/DependencyAuditor.js +378 -0
  402. package/dist/guardrails/DependencyAuditor.js.map +1 -0
  403. package/dist/guardrails/DetectorEnhanced.d.ts +111 -0
  404. package/dist/guardrails/DetectorEnhanced.js +202 -0
  405. package/dist/guardrails/DetectorEnhanced.js.map +1 -0
  406. package/dist/guardrails/GateEvaluator.d.ts +18 -0
  407. package/dist/guardrails/GateEvaluator.js +129 -0
  408. package/dist/guardrails/GateEvaluator.js.map +1 -0
  409. package/dist/guardrails/Gateway.d.ts +26 -0
  410. package/dist/guardrails/Gateway.js +56 -0
  411. package/dist/guardrails/Gateway.js.map +1 -0
  412. package/dist/guardrails/OWASPDetector.d.ts +58 -0
  413. package/dist/guardrails/OWASPDetector.js +508 -0
  414. package/dist/guardrails/OWASPDetector.js.map +1 -0
  415. package/dist/guardrails/ReviewEnforcer.d.ts +52 -0
  416. package/dist/guardrails/ReviewEnforcer.js +117 -0
  417. package/dist/guardrails/ReviewEnforcer.js.map +1 -0
  418. package/dist/guardrails/advancedDetectors.d.ts +38 -0
  419. package/dist/guardrails/advancedDetectors.js +188 -0
  420. package/dist/guardrails/advancedDetectors.js.map +1 -0
  421. package/dist/guardrails/detectors.d.ts +34 -0
  422. package/dist/guardrails/detectors.js +332 -0
  423. package/dist/guardrails/detectors.js.map +1 -0
  424. package/dist/guardrails/roles.d.ts +4 -0
  425. package/dist/guardrails/roles.js +54 -0
  426. package/dist/guardrails/roles.js.map +1 -0
  427. package/dist/hooks/BugPatternDetector.d.ts +36 -0
  428. package/dist/hooks/BugPatternDetector.js +207 -0
  429. package/dist/hooks/BugPatternDetector.js.map +1 -0
  430. package/dist/hooks/HookDeployer.d.ts +44 -0
  431. package/dist/hooks/HookDeployer.js +144 -0
  432. package/dist/hooks/HookDeployer.js.map +1 -0
  433. package/dist/hooks/HookGeneratorEnhanced.d.ts +67 -0
  434. package/dist/hooks/HookGeneratorEnhanced.js +641 -0
  435. package/dist/hooks/HookGeneratorEnhanced.js.map +1 -0
  436. package/dist/hooks/WorkflowHooksManager.d.ts +30 -0
  437. package/dist/hooks/WorkflowHooksManager.js +160 -0
  438. package/dist/hooks/WorkflowHooksManager.js.map +1 -0
  439. package/dist/hooks/index.d.ts +6 -0
  440. package/dist/hooks/index.js +5 -0
  441. package/dist/hooks/index.js.map +1 -0
  442. package/dist/i18n/Language.d.ts +9 -0
  443. package/dist/i18n/Language.js +38 -0
  444. package/dist/i18n/Language.js.map +1 -0
  445. package/dist/index.d.ts +101 -0
  446. package/dist/index.js +104 -0
  447. package/dist/index.js.map +1 -0
  448. package/dist/knowledge/CerebrumManager.d.ts +25 -0
  449. package/dist/knowledge/CerebrumManager.js +127 -0
  450. package/dist/knowledge/CerebrumManager.js.map +1 -0
  451. package/dist/knowledge/GraphifyKnowledgeBase.d.ts +38 -0
  452. package/dist/knowledge/GraphifyKnowledgeBase.js +409 -0
  453. package/dist/knowledge/GraphifyKnowledgeBase.js.map +1 -0
  454. package/dist/knowledge/KnowledgeBase.d.ts +51 -0
  455. package/dist/knowledge/KnowledgeBase.js +182 -0
  456. package/dist/knowledge/KnowledgeBase.js.map +1 -0
  457. package/dist/knowledge/SQLiteKnowledgeBase.d.ts +29 -0
  458. package/dist/knowledge/SQLiteKnowledgeBase.js +203 -0
  459. package/dist/knowledge/SQLiteKnowledgeBase.js.map +1 -0
  460. package/dist/knowledge/TfidfIndex.d.ts +50 -0
  461. package/dist/knowledge/TfidfIndex.js +177 -0
  462. package/dist/knowledge/TfidfIndex.js.map +1 -0
  463. package/dist/knowledge/UbiquitousLanguageManager.d.ts +49 -0
  464. package/dist/knowledge/UbiquitousLanguageManager.js +133 -0
  465. package/dist/knowledge/UbiquitousLanguageManager.js.map +1 -0
  466. package/dist/memory/MemoryBrain.d.ts +146 -0
  467. package/dist/memory/MemoryBrain.js +679 -0
  468. package/dist/memory/MemoryBrain.js.map +1 -0
  469. package/dist/memory/MemoryFabric.d.ts +130 -0
  470. package/dist/memory/MemoryFabric.js +317 -0
  471. package/dist/memory/MemoryFabric.js.map +1 -0
  472. package/dist/memory/MemoryIntelligence.d.ts +42 -0
  473. package/dist/memory/MemoryIntelligence.js +215 -0
  474. package/dist/memory/MemoryIntelligence.js.map +1 -0
  475. package/dist/memory/MemoryLearning.d.ts +62 -0
  476. package/dist/memory/MemoryLearning.js +209 -0
  477. package/dist/memory/MemoryLearning.js.map +1 -0
  478. package/dist/memory/MemoryProviders.d.ts +165 -0
  479. package/dist/memory/MemoryProviders.js +940 -0
  480. package/dist/memory/MemoryProviders.js.map +1 -0
  481. package/dist/memory/MemoryReview.d.ts +65 -0
  482. package/dist/memory/MemoryReview.js +260 -0
  483. package/dist/memory/MemoryReview.js.map +1 -0
  484. package/dist/memory/index.d.ts +6 -0
  485. package/dist/memory/index.js +7 -0
  486. package/dist/memory/index.js.map +1 -0
  487. package/dist/orchestration/EffectsWiring.d.ts +8 -0
  488. package/dist/orchestration/EffectsWiring.js +87 -0
  489. package/dist/orchestration/EffectsWiring.js.map +1 -0
  490. package/dist/orchestrator/OrchestratorDaemon.d.ts +44 -0
  491. package/dist/orchestrator/OrchestratorDaemon.js +150 -0
  492. package/dist/orchestrator/OrchestratorDaemon.js.map +1 -0
  493. package/dist/orchestrator/PolicyLoader.d.ts +80 -0
  494. package/dist/orchestrator/PolicyLoader.js +229 -0
  495. package/dist/orchestrator/PolicyLoader.js.map +1 -0
  496. package/dist/orchestrator/ReconciliationLoop.d.ts +71 -0
  497. package/dist/orchestrator/ReconciliationLoop.js +266 -0
  498. package/dist/orchestrator/ReconciliationLoop.js.map +1 -0
  499. package/dist/orchestrator/TrackerAdapter.d.ts +60 -0
  500. package/dist/orchestrator/TrackerAdapter.js +147 -0
  501. package/dist/orchestrator/TrackerAdapter.js.map +1 -0
  502. package/dist/orchestrator/WorkspaceManager.d.ts +66 -0
  503. package/dist/orchestrator/WorkspaceManager.js +257 -0
  504. package/dist/orchestrator/WorkspaceManager.js.map +1 -0
  505. package/dist/output/BrandThemeLoader.d.ts +54 -0
  506. package/dist/output/BrandThemeLoader.js +340 -0
  507. package/dist/output/BrandThemeLoader.js.map +1 -0
  508. package/dist/output/GovernanceDashboard.d.ts +59 -0
  509. package/dist/output/GovernanceDashboard.js +281 -0
  510. package/dist/output/GovernanceDashboard.js.map +1 -0
  511. package/dist/output/HTMLArtifactLayer.d.ts +97 -0
  512. package/dist/output/HTMLArtifactLayer.js +576 -0
  513. package/dist/output/HTMLArtifactLayer.js.map +1 -0
  514. package/dist/output/HTMLDocumentRenderer.d.ts +83 -0
  515. package/dist/output/HTMLDocumentRenderer.js +718 -0
  516. package/dist/output/HTMLDocumentRenderer.js.map +1 -0
  517. package/dist/output/UIPrototypeRenderer.d.ts +61 -0
  518. package/dist/output/UIPrototypeRenderer.js +500 -0
  519. package/dist/output/UIPrototypeRenderer.js.map +1 -0
  520. package/dist/output/index.d.ts +10 -0
  521. package/dist/output/index.js +8 -0
  522. package/dist/output/index.js.map +1 -0
  523. package/dist/prompts/PhasePromptRegistry.d.ts +53 -0
  524. package/dist/prompts/PhasePromptRegistry.js +517 -0
  525. package/dist/prompts/PhasePromptRegistry.js.map +1 -0
  526. package/dist/prompts/PromptOptimizer.d.ts +42 -0
  527. package/dist/prompts/PromptOptimizer.js +309 -0
  528. package/dist/prompts/PromptOptimizer.js.map +1 -0
  529. package/dist/prompts/VibeTemplateGallery.d.ts +25 -0
  530. package/dist/prompts/VibeTemplateGallery.js +295 -0
  531. package/dist/prompts/VibeTemplateGallery.js.map +1 -0
  532. package/dist/qa/BrowserDaemon.d.ts +23 -0
  533. package/dist/qa/BrowserDaemon.js +79 -0
  534. package/dist/qa/BrowserDaemon.js.map +1 -0
  535. package/dist/qa/E2ETestOrchestrator.d.ts +14 -0
  536. package/dist/qa/E2ETestOrchestrator.js +19 -0
  537. package/dist/qa/E2ETestOrchestrator.js.map +1 -0
  538. package/dist/review/CrossModelReviewer.d.ts +35 -0
  539. package/dist/review/CrossModelReviewer.js +75 -0
  540. package/dist/review/CrossModelReviewer.js.map +1 -0
  541. package/dist/review/ReviewAggregator.d.ts +13 -0
  542. package/dist/review/ReviewAggregator.js +28 -0
  543. package/dist/review/ReviewAggregator.js.map +1 -0
  544. package/dist/review/reviewCommands.d.ts +15 -0
  545. package/dist/review/reviewCommands.js +24 -0
  546. package/dist/review/reviewCommands.js.map +1 -0
  547. package/dist/routing/LocalModelProvider.d.ts +11 -0
  548. package/dist/routing/LocalModelProvider.js +21 -0
  549. package/dist/routing/LocalModelProvider.js.map +1 -0
  550. package/dist/routing/ModelRouter.d.ts +42 -0
  551. package/dist/routing/ModelRouter.js +94 -0
  552. package/dist/routing/ModelRouter.js.map +1 -0
  553. package/dist/routing/PromptCachePolicy.d.ts +37 -0
  554. package/dist/routing/PromptCachePolicy.js +97 -0
  555. package/dist/routing/PromptCachePolicy.js.map +1 -0
  556. package/dist/runtime/AiOsRuntime.d.ts +485 -0
  557. package/dist/runtime/AiOsRuntime.js +1846 -0
  558. package/dist/runtime/AiOsRuntime.js.map +1 -0
  559. package/dist/runtime/CostAnalyzer.d.ts +53 -0
  560. package/dist/runtime/CostAnalyzer.js +160 -0
  561. package/dist/runtime/CostAnalyzer.js.map +1 -0
  562. package/dist/runtime/CostOptimizer.d.ts +11 -0
  563. package/dist/runtime/CostOptimizer.js +21 -0
  564. package/dist/runtime/CostOptimizer.js.map +1 -0
  565. package/dist/runtime/ExecutionLedger.d.ts +46 -0
  566. package/dist/runtime/ExecutionLedger.js +71 -0
  567. package/dist/runtime/ExecutionLedger.js.map +1 -0
  568. package/dist/runtime/FinalReportGuard.d.ts +16 -0
  569. package/dist/runtime/FinalReportGuard.js +14 -0
  570. package/dist/runtime/FinalReportGuard.js.map +1 -0
  571. package/dist/runtime/ModelUsageLedger.d.ts +101 -0
  572. package/dist/runtime/ModelUsageLedger.js +296 -0
  573. package/dist/runtime/ModelUsageLedger.js.map +1 -0
  574. package/dist/runtime/RuntimeDoctor.d.ts +23 -0
  575. package/dist/runtime/RuntimeDoctor.js +151 -0
  576. package/dist/runtime/RuntimeDoctor.js.map +1 -0
  577. package/dist/runtime/RuntimeEvidenceLedger.d.ts +50 -0
  578. package/dist/runtime/RuntimeEvidenceLedger.js +89 -0
  579. package/dist/runtime/RuntimeEvidenceLedger.js.map +1 -0
  580. package/dist/runtime/SessionLedger.d.ts +53 -0
  581. package/dist/runtime/SessionLedger.js +104 -0
  582. package/dist/runtime/SessionLedger.js.map +1 -0
  583. package/dist/runtime/index.d.ts +7 -0
  584. package/dist/runtime/index.js +8 -0
  585. package/dist/runtime/index.js.map +1 -0
  586. package/dist/setup/SetupVerification.d.ts +42 -0
  587. package/dist/setup/SetupVerification.js +180 -0
  588. package/dist/setup/SetupVerification.js.map +1 -0
  589. package/dist/setup/SetupWizard.d.ts +45 -0
  590. package/dist/setup/SetupWizard.js +216 -0
  591. package/dist/setup/SetupWizard.js.map +1 -0
  592. package/dist/shield/PolicyCompiler.d.ts +70 -0
  593. package/dist/shield/PolicyCompiler.js +540 -0
  594. package/dist/shield/PolicyCompiler.js.map +1 -0
  595. package/dist/shield/ProtectedPaths.d.ts +39 -0
  596. package/dist/shield/ProtectedPaths.js +179 -0
  597. package/dist/shield/ProtectedPaths.js.map +1 -0
  598. package/dist/shield/ShieldProtocol.d.ts +50 -0
  599. package/dist/shield/ShieldProtocol.js +103 -0
  600. package/dist/shield/ShieldProtocol.js.map +1 -0
  601. package/dist/skills/ExternalSkills.d.ts +3 -0
  602. package/dist/skills/ExternalSkills.js +27 -0
  603. package/dist/skills/ExternalSkills.js.map +1 -0
  604. package/dist/skills/GrillingSessionSkill.d.ts +65 -0
  605. package/dist/skills/GrillingSessionSkill.js +113 -0
  606. package/dist/skills/GrillingSessionSkill.js.map +1 -0
  607. package/dist/skills/GrillingTemplates.d.ts +7 -0
  608. package/dist/skills/GrillingTemplates.js +38 -0
  609. package/dist/skills/GrillingTemplates.js.map +1 -0
  610. package/dist/skills/RoleSkills.d.ts +20 -0
  611. package/dist/skills/RoleSkills.js +154 -0
  612. package/dist/skills/RoleSkills.js.map +1 -0
  613. package/dist/skills/SkillCatalog.d.ts +13 -0
  614. package/dist/skills/SkillCatalog.js +184 -0
  615. package/dist/skills/SkillCatalog.js.map +1 -0
  616. package/dist/skills/SkillDiscovery.d.ts +84 -0
  617. package/dist/skills/SkillDiscovery.js +402 -0
  618. package/dist/skills/SkillDiscovery.js.map +1 -0
  619. package/dist/skills/SkillDoctor.d.ts +37 -0
  620. package/dist/skills/SkillDoctor.js +267 -0
  621. package/dist/skills/SkillDoctor.js.map +1 -0
  622. package/dist/skills/SkillExecutor.d.ts +38 -0
  623. package/dist/skills/SkillExecutor.js +237 -0
  624. package/dist/skills/SkillExecutor.js.map +1 -0
  625. package/dist/skills/SkillFrontmatter.d.ts +28 -0
  626. package/dist/skills/SkillFrontmatter.js +152 -0
  627. package/dist/skills/SkillFrontmatter.js.map +1 -0
  628. package/dist/skills/SkillInstaller.d.ts +40 -0
  629. package/dist/skills/SkillInstaller.js +117 -0
  630. package/dist/skills/SkillInstaller.js.map +1 -0
  631. package/dist/skills/SkillMdStandard.d.ts +33 -0
  632. package/dist/skills/SkillMdStandard.js +88 -0
  633. package/dist/skills/SkillMdStandard.js.map +1 -0
  634. package/dist/skills/SkillRadar.d.ts +83 -0
  635. package/dist/skills/SkillRadar.js +404 -0
  636. package/dist/skills/SkillRadar.js.map +1 -0
  637. package/dist/skills/SkillRegistry.d.ts +112 -0
  638. package/dist/skills/SkillRegistry.js +161 -0
  639. package/dist/skills/SkillRegistry.js.map +1 -0
  640. package/dist/skills/SkillRepository.d.ts +71 -0
  641. package/dist/skills/SkillRepository.js +435 -0
  642. package/dist/skills/SkillRepository.js.map +1 -0
  643. package/dist/skills/TriggerEngine.d.ts +43 -0
  644. package/dist/skills/TriggerEngine.js +142 -0
  645. package/dist/skills/TriggerEngine.js.map +1 -0
  646. package/dist/skills/coreSkills.d.ts +6 -0
  647. package/dist/skills/coreSkills.js +41 -0
  648. package/dist/skills/coreSkills.js.map +1 -0
  649. package/dist/skills/index.d.ts +10 -0
  650. package/dist/skills/index.js +12 -0
  651. package/dist/skills/index.js.map +1 -0
  652. package/dist/skills/interop/GStackInterop.d.ts +15 -0
  653. package/dist/skills/interop/GStackInterop.js +34 -0
  654. package/dist/skills/interop/GStackInterop.js.map +1 -0
  655. package/dist/skills/interop/OMCInterop.d.ts +15 -0
  656. package/dist/skills/interop/OMCInterop.js +34 -0
  657. package/dist/skills/interop/OMCInterop.js.map +1 -0
  658. package/dist/skills/routing/SkillGate.d.ts +12 -0
  659. package/dist/skills/routing/SkillGate.js +117 -0
  660. package/dist/skills/routing/SkillGate.js.map +1 -0
  661. package/dist/skills/routing/SkillPlanner.d.ts +8 -0
  662. package/dist/skills/routing/SkillPlanner.js +179 -0
  663. package/dist/skills/routing/SkillPlanner.js.map +1 -0
  664. package/dist/skills/routing/SkillPolicy.d.ts +6 -0
  665. package/dist/skills/routing/SkillPolicy.js +336 -0
  666. package/dist/skills/routing/SkillPolicy.js.map +1 -0
  667. package/dist/skills/routing/SkillRoutingTypes.d.ts +89 -0
  668. package/dist/skills/routing/SkillRoutingTypes.js +2 -0
  669. package/dist/skills/routing/SkillRoutingTypes.js.map +1 -0
  670. package/dist/skills/routing/TaskIntentClassifier.d.ts +6 -0
  671. package/dist/skills/routing/TaskIntentClassifier.js +79 -0
  672. package/dist/skills/routing/TaskIntentClassifier.js.map +1 -0
  673. package/dist/skills/routing/index.d.ts +5 -0
  674. package/dist/skills/routing/index.js +6 -0
  675. package/dist/skills/routing/index.js.map +1 -0
  676. package/dist/tasks/IssueTriageFSM.d.ts +26 -0
  677. package/dist/tasks/IssueTriageFSM.js +107 -0
  678. package/dist/tasks/IssueTriageFSM.js.map +1 -0
  679. package/dist/tasks/TaskEngine.d.ts +97 -0
  680. package/dist/tasks/TaskEngine.js +289 -0
  681. package/dist/tasks/TaskEngine.js.map +1 -0
  682. package/dist/testing/DiffTestSelector.d.ts +22 -0
  683. package/dist/testing/DiffTestSelector.js +114 -0
  684. package/dist/testing/DiffTestSelector.js.map +1 -0
  685. package/dist/testing/index.d.ts +1 -0
  686. package/dist/testing/index.js +3 -0
  687. package/dist/testing/index.js.map +1 -0
  688. package/dist/tools/CommandOutputCompressor.d.ts +28 -0
  689. package/dist/tools/CommandOutputCompressor.js +242 -0
  690. package/dist/tools/CommandOutputCompressor.js.map +1 -0
  691. package/dist/tools/CommandRunLedger.d.ts +77 -0
  692. package/dist/tools/CommandRunLedger.js +111 -0
  693. package/dist/tools/CommandRunLedger.js.map +1 -0
  694. package/dist/tools/RtkRuntime.d.ts +9 -0
  695. package/dist/tools/RtkRuntime.js +43 -0
  696. package/dist/tools/RtkRuntime.js.map +1 -0
  697. package/dist/tools/SafeCommandRunner.d.ts +16 -0
  698. package/dist/tools/SafeCommandRunner.js +83 -0
  699. package/dist/tools/SafeCommandRunner.js.map +1 -0
  700. package/dist/tools/ToolCapabilityRegistry.d.ts +51 -0
  701. package/dist/tools/ToolCapabilityRegistry.js +295 -0
  702. package/dist/tools/ToolCapabilityRegistry.js.map +1 -0
  703. package/dist/tools/ToolEvidenceGate.d.ts +39 -0
  704. package/dist/tools/ToolEvidenceGate.js +117 -0
  705. package/dist/tools/ToolEvidenceGate.js.map +1 -0
  706. package/dist/tools/ToolEvidenceStore.d.ts +58 -0
  707. package/dist/tools/ToolEvidenceStore.js +129 -0
  708. package/dist/tools/ToolEvidenceStore.js.map +1 -0
  709. package/dist/tools/ToolOrchestrator.d.ts +67 -0
  710. package/dist/tools/ToolOrchestrator.js +252 -0
  711. package/dist/tools/ToolOrchestrator.js.map +1 -0
  712. package/dist/tools/ToolPolicy.d.ts +33 -0
  713. package/dist/tools/ToolPolicy.js +172 -0
  714. package/dist/tools/ToolPolicy.js.map +1 -0
  715. package/dist/tools/index.d.ts +7 -0
  716. package/dist/tools/index.js +8 -0
  717. package/dist/tools/index.js.map +1 -0
  718. package/dist/tui/TuiDashboard.d.ts +3 -0
  719. package/dist/tui/TuiDashboard.js +120 -0
  720. package/dist/tui/TuiDashboard.js.map +1 -0
  721. package/dist/version.d.ts +3 -0
  722. package/dist/version.js +15 -0
  723. package/dist/version.js.map +1 -0
  724. package/dist/workflow/AdaptiveWorkflowRouter.d.ts +38 -0
  725. package/dist/workflow/AdaptiveWorkflowRouter.js +214 -0
  726. package/dist/workflow/AdaptiveWorkflowRouter.js.map +1 -0
  727. package/dist/workflow/CommitDiscipline.d.ts +68 -0
  728. package/dist/workflow/CommitDiscipline.js +328 -0
  729. package/dist/workflow/CommitDiscipline.js.map +1 -0
  730. package/dist/workflow/ContextGovernance.d.ts +51 -0
  731. package/dist/workflow/ContextGovernance.js +233 -0
  732. package/dist/workflow/ContextGovernance.js.map +1 -0
  733. package/dist/workflow/CrossRepoOrchestrator.d.ts +92 -0
  734. package/dist/workflow/CrossRepoOrchestrator.js +408 -0
  735. package/dist/workflow/CrossRepoOrchestrator.js.map +1 -0
  736. package/dist/workflow/DiagnosticLoop.d.ts +40 -0
  737. package/dist/workflow/DiagnosticLoop.js +105 -0
  738. package/dist/workflow/DiagnosticLoop.js.map +1 -0
  739. package/dist/workflow/EngineeringStandards.d.ts +212 -0
  740. package/dist/workflow/EngineeringStandards.js +1113 -0
  741. package/dist/workflow/EngineeringStandards.js.map +1 -0
  742. package/dist/workflow/EvidenceStore.d.ts +20 -0
  743. package/dist/workflow/EvidenceStore.js +48 -0
  744. package/dist/workflow/EvidenceStore.js.map +1 -0
  745. package/dist/workflow/EvolutionShadowPromoter.d.ts +46 -0
  746. package/dist/workflow/EvolutionShadowPromoter.js +73 -0
  747. package/dist/workflow/EvolutionShadowPromoter.js.map +1 -0
  748. package/dist/workflow/GateCatalog.d.ts +63 -0
  749. package/dist/workflow/GateCatalog.js +268 -0
  750. package/dist/workflow/GateCatalog.js.map +1 -0
  751. package/dist/workflow/GovernanceLock.d.ts +35 -0
  752. package/dist/workflow/GovernanceLock.js +58 -0
  753. package/dist/workflow/GovernanceLock.js.map +1 -0
  754. package/dist/workflow/GovernanceRoi.d.ts +52 -0
  755. package/dist/workflow/GovernanceRoi.js +204 -0
  756. package/dist/workflow/GovernanceRoi.js.map +1 -0
  757. package/dist/workflow/GovernanceTemplatePacks.d.ts +24 -0
  758. package/dist/workflow/GovernanceTemplatePacks.js +2134 -0
  759. package/dist/workflow/GovernanceTemplatePacks.js.map +1 -0
  760. package/dist/workflow/GovernanceTemplates.d.ts +19 -0
  761. package/dist/workflow/GovernanceTemplates.js +1291 -0
  762. package/dist/workflow/GovernanceTemplates.js.map +1 -0
  763. package/dist/workflow/McpGovernance.d.ts +63 -0
  764. package/dist/workflow/McpGovernance.js +198 -0
  765. package/dist/workflow/McpGovernance.js.map +1 -0
  766. package/dist/workflow/OutOfScopeStore.d.ts +37 -0
  767. package/dist/workflow/OutOfScopeStore.js +164 -0
  768. package/dist/workflow/OutOfScopeStore.js.map +1 -0
  769. package/dist/workflow/PhaseMarkerTracker.d.ts +63 -0
  770. package/dist/workflow/PhaseMarkerTracker.js +291 -0
  771. package/dist/workflow/PhaseMarkerTracker.js.map +1 -0
  772. package/dist/workflow/ResourceGovernance.d.ts +120 -0
  773. package/dist/workflow/ResourceGovernance.js +531 -0
  774. package/dist/workflow/ResourceGovernance.js.map +1 -0
  775. package/dist/workflow/ReviewAnalyzer.d.ts +80 -0
  776. package/dist/workflow/ReviewAnalyzer.js +438 -0
  777. package/dist/workflow/ReviewAnalyzer.js.map +1 -0
  778. package/dist/workflow/ReviewStore.d.ts +36 -0
  779. package/dist/workflow/ReviewStore.js +42 -0
  780. package/dist/workflow/ReviewStore.js.map +1 -0
  781. package/dist/workflow/SecurityAudit.d.ts +27 -0
  782. package/dist/workflow/SecurityAudit.js +294 -0
  783. package/dist/workflow/SecurityAudit.js.map +1 -0
  784. package/dist/workflow/SessionCoordinator.d.ts +103 -0
  785. package/dist/workflow/SessionCoordinator.js +401 -0
  786. package/dist/workflow/SessionCoordinator.js.map +1 -0
  787. package/dist/workflow/SessionPreamble.d.ts +19 -0
  788. package/dist/workflow/SessionPreamble.js +130 -0
  789. package/dist/workflow/SessionPreamble.js.map +1 -0
  790. package/dist/workflow/SessionStateTracker.d.ts +74 -0
  791. package/dist/workflow/SessionStateTracker.js +270 -0
  792. package/dist/workflow/SessionStateTracker.js.map +1 -0
  793. package/dist/workflow/ShipPipeline.d.ts +30 -0
  794. package/dist/workflow/ShipPipeline.js +366 -0
  795. package/dist/workflow/ShipPipeline.js.map +1 -0
  796. package/dist/workflow/TaskArtifactScaffolder.d.ts +69 -0
  797. package/dist/workflow/TaskArtifactScaffolder.js +333 -0
  798. package/dist/workflow/TaskArtifactScaffolder.js.map +1 -0
  799. package/dist/workflow/TaskDependencyGraph.d.ts +73 -0
  800. package/dist/workflow/TaskDependencyGraph.js +245 -0
  801. package/dist/workflow/TaskDependencyGraph.js.map +1 -0
  802. package/dist/workflow/TaskLevelDetector.d.ts +41 -0
  803. package/dist/workflow/TaskLevelDetector.js +219 -0
  804. package/dist/workflow/TaskLevelDetector.js.map +1 -0
  805. package/dist/workflow/TaskMetricsStore.d.ts +49 -0
  806. package/dist/workflow/TaskMetricsStore.js +149 -0
  807. package/dist/workflow/TaskMetricsStore.js.map +1 -0
  808. package/dist/workflow/TaskScoreEngine.d.ts +42 -0
  809. package/dist/workflow/TaskScoreEngine.js +181 -0
  810. package/dist/workflow/TaskScoreEngine.js.map +1 -0
  811. package/dist/workflow/TddLoop.d.ts +49 -0
  812. package/dist/workflow/TddLoop.js +78 -0
  813. package/dist/workflow/TddLoop.js.map +1 -0
  814. package/dist/workflow/UpgradeManager.d.ts +178 -0
  815. package/dist/workflow/UpgradeManager.js +665 -0
  816. package/dist/workflow/UpgradeManager.js.map +1 -0
  817. package/dist/workflow/VerificationCommands.d.ts +36 -0
  818. package/dist/workflow/VerificationCommands.js +123 -0
  819. package/dist/workflow/VerificationCommands.js.map +1 -0
  820. package/dist/workflow/VerificationProfile.d.ts +67 -0
  821. package/dist/workflow/VerificationProfile.js +241 -0
  822. package/dist/workflow/VerificationProfile.js.map +1 -0
  823. package/dist/workflow/VerificationSchema.d.ts +46 -0
  824. package/dist/workflow/VerificationSchema.js +97 -0
  825. package/dist/workflow/VerificationSchema.js.map +1 -0
  826. package/dist/workflow/WorkflowArtifactWriter.d.ts +113 -0
  827. package/dist/workflow/WorkflowArtifactWriter.js +242 -0
  828. package/dist/workflow/WorkflowArtifactWriter.js.map +1 -0
  829. package/dist/workflow/WorkflowEngine.d.ts +83 -0
  830. package/dist/workflow/WorkflowEngine.js +183 -0
  831. package/dist/workflow/WorkflowEngine.js.map +1 -0
  832. package/dist/workflow/WorkflowGuidance.d.ts +30 -0
  833. package/dist/workflow/WorkflowGuidance.js +204 -0
  834. package/dist/workflow/WorkflowGuidance.js.map +1 -0
  835. package/dist/workflow/WorkflowOpenTasks.d.ts +16 -0
  836. package/dist/workflow/WorkflowOpenTasks.js +37 -0
  837. package/dist/workflow/WorkflowOpenTasks.js.map +1 -0
  838. package/dist/workflow/WorkflowOrchestrator.d.ts +59 -0
  839. package/dist/workflow/WorkflowOrchestrator.js +326 -0
  840. package/dist/workflow/WorkflowOrchestrator.js.map +1 -0
  841. package/dist/workflow/WorkflowTemplates.d.ts +38 -0
  842. package/dist/workflow/WorkflowTemplates.js +371 -0
  843. package/dist/workflow/WorkflowTemplates.js.map +1 -0
  844. package/dist/workflow/WorkspaceLifecycle.d.ts +71 -0
  845. package/dist/workflow/WorkspaceLifecycle.js +401 -0
  846. package/dist/workflow/WorkspaceLifecycle.js.map +1 -0
  847. package/dist/workflow/WorkspacePolicy.d.ts +46 -0
  848. package/dist/workflow/WorkspacePolicy.js +141 -0
  849. package/dist/workflow/WorkspacePolicy.js.map +1 -0
  850. package/dist/workflow/WorkspaceSafety.d.ts +9 -0
  851. package/dist/workflow/WorkspaceSafety.js +49 -0
  852. package/dist/workflow/WorkspaceSafety.js.map +1 -0
  853. package/dist/workflow/WorkspaceTopology.d.ts +58 -0
  854. package/dist/workflow/WorkspaceTopology.js +176 -0
  855. package/dist/workflow/WorkspaceTopology.js.map +1 -0
  856. package/dist/workflow/autofix/AutoFixEngine.d.ts +37 -0
  857. package/dist/workflow/autofix/AutoFixEngine.js +169 -0
  858. package/dist/workflow/autofix/AutoFixEngine.js.map +1 -0
  859. package/dist/workflow/autonomous/AutonomousDevLoop.d.ts +88 -0
  860. package/dist/workflow/autonomous/AutonomousDevLoop.js +381 -0
  861. package/dist/workflow/autonomous/AutonomousDevLoop.js.map +1 -0
  862. package/dist/workflow/autonomous/BackgroundHunter.d.ts +74 -0
  863. package/dist/workflow/autonomous/BackgroundHunter.js +220 -0
  864. package/dist/workflow/autonomous/BackgroundHunter.js.map +1 -0
  865. package/dist/workflow/autonomous/WorklogManager.d.ts +50 -0
  866. package/dist/workflow/autonomous/WorklogManager.js +264 -0
  867. package/dist/workflow/autonomous/WorklogManager.js.map +1 -0
  868. package/dist/workflow/autonomous/index.d.ts +3 -0
  869. package/dist/workflow/autonomous/index.js +5 -0
  870. package/dist/workflow/autonomous/index.js.map +1 -0
  871. package/dist/workflow/cognitive/AmbiguityScorer.d.ts +17 -0
  872. package/dist/workflow/cognitive/AmbiguityScorer.js +107 -0
  873. package/dist/workflow/cognitive/AmbiguityScorer.js.map +1 -0
  874. package/dist/workflow/cognitive/ConsensusPlanner.d.ts +26 -0
  875. package/dist/workflow/cognitive/ConsensusPlanner.js +141 -0
  876. package/dist/workflow/cognitive/ConsensusPlanner.js.map +1 -0
  877. package/dist/workflow/cognitive/SocraticQuestioner.d.ts +33 -0
  878. package/dist/workflow/cognitive/SocraticQuestioner.js +276 -0
  879. package/dist/workflow/cognitive/SocraticQuestioner.js.map +1 -0
  880. package/dist/workflow/evolution/LessonExtractor.d.ts +90 -0
  881. package/dist/workflow/evolution/LessonExtractor.js +317 -0
  882. package/dist/workflow/evolution/LessonExtractor.js.map +1 -0
  883. package/dist/workflow/evolution/SelfImproveEngine.d.ts +156 -0
  884. package/dist/workflow/evolution/SelfImproveEngine.js +361 -0
  885. package/dist/workflow/evolution/SelfImproveEngine.js.map +1 -0
  886. package/dist/workflow/execution/RalphEngine.d.ts +54 -0
  887. package/dist/workflow/execution/RalphEngine.js +145 -0
  888. package/dist/workflow/execution/RalphEngine.js.map +1 -0
  889. package/dist/workflow/execution/UltraworkEngine.d.ts +43 -0
  890. package/dist/workflow/execution/UltraworkEngine.js +135 -0
  891. package/dist/workflow/execution/UltraworkEngine.js.map +1 -0
  892. package/dist/workflow/gates/EnhancedGates.d.ts +74 -0
  893. package/dist/workflow/gates/EnhancedGates.js +653 -0
  894. package/dist/workflow/gates/EnhancedGates.js.map +1 -0
  895. package/dist/workflow/gates/GateSystem.d.ts +180 -0
  896. package/dist/workflow/gates/GateSystem.js +1279 -0
  897. package/dist/workflow/gates/GateSystem.js.map +1 -0
  898. package/dist/workflow/gates/MetaGovernanceGates.d.ts +70 -0
  899. package/dist/workflow/gates/MetaGovernanceGates.js +617 -0
  900. package/dist/workflow/gates/MetaGovernanceGates.js.map +1 -0
  901. package/dist/workflow/gates/VisualGate.d.ts +41 -0
  902. package/dist/workflow/gates/VisualGate.js +174 -0
  903. package/dist/workflow/gates/VisualGate.js.map +1 -0
  904. package/dist/workflow/index.d.ts +45 -0
  905. package/dist/workflow/index.js +47 -0
  906. package/dist/workflow/index.js.map +1 -0
  907. package/dist/workflow/qa/E2ETestRunner.d.ts +102 -0
  908. package/dist/workflow/qa/E2ETestRunner.js +227 -0
  909. package/dist/workflow/qa/E2ETestRunner.js.map +1 -0
  910. package/dist/workflow/quality/HonestDelivery.d.ts +19 -0
  911. package/dist/workflow/quality/HonestDelivery.js +77 -0
  912. package/dist/workflow/quality/HonestDelivery.js.map +1 -0
  913. package/dist/workflow/quality/KarpathyEvaluator.d.ts +18 -0
  914. package/dist/workflow/quality/KarpathyEvaluator.js +76 -0
  915. package/dist/workflow/quality/KarpathyEvaluator.js.map +1 -0
  916. package/dist/workflow/types.d.ts +151 -0
  917. package/dist/workflow/types.js +4 -0
  918. package/dist/workflow/types.js.map +1 -0
  919. package/dist/workflows/DAGBuilder.d.ts +52 -0
  920. package/dist/workflows/DAGBuilder.js +169 -0
  921. package/dist/workflows/DAGBuilder.js.map +1 -0
  922. package/dist/workflows/GateParser.d.ts +55 -0
  923. package/dist/workflows/GateParser.js +73 -0
  924. package/dist/workflows/GateParser.js.map +1 -0
  925. package/dist/workflows/WorkflowExecutor.d.ts +56 -0
  926. package/dist/workflows/WorkflowExecutor.js +143 -0
  927. package/dist/workflows/WorkflowExecutor.js.map +1 -0
  928. package/dist/workflows/WorkflowOrchestrator.d.ts +81 -0
  929. package/dist/workflows/WorkflowOrchestrator.js +337 -0
  930. package/dist/workflows/WorkflowOrchestrator.js.map +1 -0
  931. package/dist/workflows/index.d.ts +2 -0
  932. package/dist/workflows/index.js +5 -0
  933. package/dist/workflows/index.js.map +1 -0
  934. package/dist/workflows/presets.d.ts +34 -0
  935. package/dist/workflows/presets.js +224 -0
  936. package/dist/workflows/presets.js.map +1 -0
  937. package/docs/README.md +105 -0
  938. package/docs/guides/DEVELOPMENT_WORKFLOW.md +99 -0
  939. package/docs/guides/GETTING_STARTED.md +93 -0
  940. package/docs/guides/MEDICAL_AGENT_OPERATING_GUIDE.md +61 -0
  941. package/docs/guides/MEDICAL_RESEARCH_DELIVERY.md +217 -0
  942. package/docs/guides/MIGRATION.md +119 -0
  943. package/docs/reference/cli.md +2921 -0
  944. package/docs/start/README.md +79 -0
  945. package/docs/start/agent-governance-demo.md +107 -0
  946. package/docs/start/artifact-lifecycle.md +326 -0
  947. package/docs/start/quickstart.md +191 -0
  948. package/docs/start/workflow-upgrade.md +198 -0
  949. package/docs/workflow/GATES_AND_SCORE.md +89 -0
  950. package/docs/workflow/PROMPT_OPTIMIZATION.md +44 -0
  951. package/docs/workflow/README.md +123 -0
  952. package/docs/workflow/node-library.md +52 -0
  953. package/docs/workflow/templates/api-contract.md +29 -0
  954. package/docs/workflow/templates/architecture-review.md +23 -0
  955. package/docs/workflow/templates/db-change-plan.md +20 -0
  956. package/docs/workflow/templates/docs-impact.md +17 -0
  957. package/docs/workflow/templates/e2e-plan.md +20 -0
  958. package/docs/workflow/templates/explore.md +16 -0
  959. package/docs/workflow/templates/github-actions-scale-preflight.yml +32 -0
  960. package/docs/workflow/templates/mini-prd.md +16 -0
  961. package/docs/workflow/templates/plan.md +37 -0
  962. package/docs/workflow/templates/pre-push-scale-preflight.sh +8 -0
  963. package/docs/workflow/templates/product-smoke.md +61 -0
  964. package/docs/workflow/templates/reality-check.md +28 -0
  965. package/docs/workflow/templates/resource-cleanup.md +17 -0
  966. package/docs/workflow/templates/resource-impact.md +25 -0
  967. package/docs/workflow/templates/review.md +12 -0
  968. package/docs/workflow/templates/runtime.md +23 -0
  969. package/docs/workflow/templates/security-review.md +26 -0
  970. package/docs/workflow/templates/skill-evidence.md +33 -0
  971. package/docs/workflow/templates/skill-plan.md +39 -0
  972. package/docs/workflow/templates/spec.md +17 -0
  973. package/docs/workflow/templates/standards-impact.md +28 -0
  974. package/docs/workflow/templates/summary.md +16 -0
  975. package/docs/workflow/templates/tasks.md +8 -0
  976. package/docs/workflow/templates/ui-spec.md +29 -0
  977. package/docs/workflow/templates/verification.md +20 -0
  978. package/docs/workflow/templates/visual-review.md +20 -0
  979. package/docs/zh/quickstart.md +108 -0
  980. package/examples/demo-projects/agent-governance-demo/CONTEXT.md +14 -0
  981. package/examples/demo-projects/agent-governance-demo/README.md +48 -0
  982. package/examples/demo-projects/agent-governance-demo/docs/CONTEXT-MAP.md +14 -0
  983. package/examples/demo-projects/agent-governance-demo/package.json +22 -0
  984. package/examples/demo-projects/agent-governance-demo/src/oauth-state.ts +39 -0
  985. package/examples/demo-projects/agent-governance-demo/tests/oauth-state.test.ts +52 -0
  986. package/mcp-configs/_INDEX.md +55 -0
  987. package/mcp-configs/context7/config.json +9 -0
  988. package/mcp-configs/fetch/config.json +9 -0
  989. package/mcp-configs/filesystem/config.json +9 -0
  990. package/mcp-configs/github/config.json +11 -0
  991. package/mcp-configs/memory/config.json +9 -0
  992. package/mcp-configs/neon/config.json +11 -0
  993. package/mcp-configs/playwright/config.json +9 -0
  994. package/mcp-configs/postgres/config.json +11 -0
  995. package/mcp-configs/puppeteer/config.json +9 -0
  996. package/mcp-configs/sequential-thinking/config.json +9 -0
  997. package/package.json +113 -0
  998. package/scripts/workflow/lib/gbrain-runtime.mjs +185 -0
  999. package/scripts/workflow/lib/report-output.mjs +107 -0
  1000. package/scripts/workflow/medscale-release-smoke.mjs +338 -0
  1001. package/scripts/workflow/provider-rehearsal.mjs +597 -0
  1002. package/scripts/workflow/setup-smoke.mjs +433 -0
  1003. package/target-research-platform/bridge_runner.py +310 -0
  1004. package/target-research-platform/config.yaml +148 -0
  1005. package/target-research-platform/data/immune_infiltration/ACC.csv +201 -0
  1006. package/target-research-platform/data/immune_infiltration/BLCA.csv +201 -0
  1007. package/target-research-platform/data/immune_infiltration/BRCA.csv +201 -0
  1008. package/target-research-platform/data/immune_infiltration/CESC.csv +201 -0
  1009. package/target-research-platform/data/immune_infiltration/CHOL.csv +201 -0
  1010. package/target-research-platform/data/immune_infiltration/COAD.csv +201 -0
  1011. package/target-research-platform/data/immune_infiltration/DLBC.csv +201 -0
  1012. package/target-research-platform/data/immune_infiltration/ESCA.csv +201 -0
  1013. package/target-research-platform/data/immune_infiltration/GBM.csv +201 -0
  1014. package/target-research-platform/data/immune_infiltration/HNSC.csv +201 -0
  1015. package/target-research-platform/data/immune_infiltration/KICH.csv +201 -0
  1016. package/target-research-platform/data/immune_infiltration/KIRC.csv +201 -0
  1017. package/target-research-platform/data/immune_infiltration/KIRP.csv +201 -0
  1018. package/target-research-platform/data/immune_infiltration/LAML.csv +201 -0
  1019. package/target-research-platform/data/immune_infiltration/LGG.csv +201 -0
  1020. package/target-research-platform/data/immune_infiltration/LIHC.csv +201 -0
  1021. package/target-research-platform/data/immune_infiltration/LUAD.csv +201 -0
  1022. package/target-research-platform/data/immune_infiltration/LUSC.csv +201 -0
  1023. package/target-research-platform/data/immune_infiltration/MESO.csv +201 -0
  1024. package/target-research-platform/data/immune_infiltration/OV.csv +201 -0
  1025. package/target-research-platform/data/immune_infiltration/PAAD.csv +201 -0
  1026. package/target-research-platform/data/immune_infiltration/PCPG.csv +201 -0
  1027. package/target-research-platform/data/immune_infiltration/PRAD.csv +201 -0
  1028. package/target-research-platform/data/immune_infiltration/READ.csv +201 -0
  1029. package/target-research-platform/data/immune_infiltration/SARC.csv +201 -0
  1030. package/target-research-platform/data/immune_infiltration/SKCM.csv +201 -0
  1031. package/target-research-platform/data/immune_infiltration/STAD.csv +201 -0
  1032. package/target-research-platform/data/immune_infiltration/TGCT.csv +201 -0
  1033. package/target-research-platform/data/immune_infiltration/THCA.csv +201 -0
  1034. package/target-research-platform/data/immune_infiltration/THYM.csv +201 -0
  1035. package/target-research-platform/data/immune_infiltration/UCEC.csv +201 -0
  1036. package/target-research-platform/data/immune_infiltration/UCS.csv +201 -0
  1037. package/target-research-platform/data/immune_infiltration/UVM.csv +201 -0
  1038. package/target-research-platform/docs/JSON_SCHEMA.md +352 -0
  1039. package/target-research-platform/docs/PROGRESS_2026-06-09.md +140 -0
  1040. package/target-research-platform/main.py +755 -0
  1041. package/target-research-platform/pyproject.toml +54 -0
  1042. package/target-research-platform/requirements.txt +9 -0
  1043. package/target-research-platform/run_dashboard.py +5 -0
  1044. package/target-research-platform/run_real_medical_workflow.py +28 -0
  1045. package/target-research-platform/scripts/demo_report.py +481 -0
  1046. package/target-research-platform/scripts/generate_evidence_package.py +75 -0
  1047. package/target-research-platform/scripts/prepare_immune_data.py +386 -0
  1048. package/target-research-platform/src/__init__.py +4 -0
  1049. package/target-research-platform/src/analysis/__init__.py +3 -0
  1050. package/target-research-platform/src/analysis/stage1_expression/__init__.py +12 -0
  1051. package/target-research-platform/src/analysis/stage1_expression/immune_correlation.py +366 -0
  1052. package/target-research-platform/src/analysis/stage1_expression/pipeline.py +579 -0
  1053. package/target-research-platform/src/analysis/stage1_expression/survival_analysis.py +382 -0
  1054. package/target-research-platform/src/analysis/stage2_screening/__init__.py +12 -0
  1055. package/target-research-platform/src/analysis/stage2_screening/differential_expression.py +451 -0
  1056. package/target-research-platform/src/analysis/stage2_screening/druggability_score.py +477 -0
  1057. package/target-research-platform/src/analysis/stage2_screening/pipeline.py +822 -0
  1058. package/target-research-platform/src/analysis/stage3_deep_research/__init__.py +12 -0
  1059. package/target-research-platform/src/analysis/stage3_deep_research/competitive_landscape.py +479 -0
  1060. package/target-research-platform/src/analysis/stage3_deep_research/pipeline.py +763 -0
  1061. package/target-research-platform/src/analysis/stage3_deep_research/target_function.py +290 -0
  1062. package/target-research-platform/src/analysis/stage4_business/__init__.py +12 -0
  1063. package/target-research-platform/src/analysis/stage4_business/business_plan.py +816 -0
  1064. package/target-research-platform/src/analysis/stage4_business/milestone_planner.py +844 -0
  1065. package/target-research-platform/src/analysis/stage4_business/pipeline.py +284 -0
  1066. package/target-research-platform/src/api_clients/__init__.py +29 -0
  1067. package/target-research-platform/src/api_clients/aminer_client.py +163 -0
  1068. package/target-research-platform/src/api_clients/base_client.py +186 -0
  1069. package/target-research-platform/src/api_clients/clinicaltrials_client.py +411 -0
  1070. package/target-research-platform/src/api_clients/geo_client.py +1420 -0
  1071. package/target-research-platform/src/api_clients/gtex_client.py +209 -0
  1072. package/target-research-platform/src/api_clients/hpa_client.py +170 -0
  1073. package/target-research-platform/src/api_clients/immune_data_manager.py +247 -0
  1074. package/target-research-platform/src/api_clients/openalex_client.py +86 -0
  1075. package/target-research-platform/src/api_clients/opentargets_client.py +558 -0
  1076. package/target-research-platform/src/api_clients/pubmed_client.py +361 -0
  1077. package/target-research-platform/src/api_clients/tcga_client.py +712 -0
  1078. package/target-research-platform/src/api_clients/timer_client.py +169 -0
  1079. package/target-research-platform/src/dashboard/app.py +2283 -0
  1080. package/target-research-platform/src/dashboard/deliverables.py +710 -0
  1081. package/target-research-platform/src/dashboard/static/artifactPreview.js +96 -0
  1082. package/target-research-platform/src/dashboard/static/index.html +1292 -0
  1083. package/target-research-platform/src/dashboard/status_tracker.py +237 -0
  1084. package/target-research-platform/src/output/__init__.py +42 -0
  1085. package/target-research-platform/src/output/agent_llm_provider.py +171 -0
  1086. package/target-research-platform/src/output/chart_generator.py +550 -0
  1087. package/target-research-platform/src/output/data_exporter.py +215 -0
  1088. package/target-research-platform/src/output/delivery_packager.py +791 -0
  1089. package/target-research-platform/src/output/evidence_package.py +230 -0
  1090. package/target-research-platform/src/output/journal_templates.py +193 -0
  1091. package/target-research-platform/src/output/literature_enricher.py +395 -0
  1092. package/target-research-platform/src/output/literature_reviewer.py +420 -0
  1093. package/target-research-platform/src/output/manuscript_fact_checker.py +279 -0
  1094. package/target-research-platform/src/output/manuscript_generator.py +1189 -0
  1095. package/target-research-platform/src/output/manuscript_quality.py +401 -0
  1096. package/target-research-platform/src/output/medical_skills_bridge.py +140 -0
  1097. package/target-research-platform/src/output/report_generator.py +542 -0
  1098. package/target-research-platform/src/output/usage_envelope.py +193 -0
  1099. package/target-research-platform/src/utils/__init__.py +1 -0
  1100. package/target-research-platform/src/utils/config.py +125 -0
  1101. package/target-research-platform/src/utils/logger.py +71 -0
  1102. package/target-research-platform/src/validators/__init__.py +13 -0
  1103. package/target-research-platform/src/validators/cross_validator.py +394 -0
  1104. package/target-research-platform/src/validators/data_provenance.py +298 -0
@@ -0,0 +1,653 @@
1
+ // SCALE Engine — Enhanced Gates (G16-G22)
2
+ // Commit Discipline, Doc Hygiene, Runtime Evidence, Code Review, Supply Chain, Context Budget, Session Health
3
+ import { existsSync, readFileSync, readdirSync, statSync } from 'node:fs';
4
+ import { join } from 'node:path';
5
+ import { execSync } from 'node:child_process';
6
+ function createEvidence(input) {
7
+ return {
8
+ id: `EVID-${Date.now()}-${Math.random().toString(36).slice(2, 8)}`,
9
+ ...input,
10
+ };
11
+ }
12
+ function textEvidence(items) {
13
+ return items.map(item => `${item.label}: ${item.detail}`).join('\n');
14
+ }
15
+ function gitCommand(cmd, cwd) {
16
+ try {
17
+ return execSync(`git ${cmd}`, { encoding: 'utf-8', stdio: 'pipe', cwd: cwd ?? process.cwd() }).trim();
18
+ }
19
+ catch {
20
+ return '';
21
+ }
22
+ }
23
+ // ============================================================================
24
+ // G16: Commit Discipline — 提交纪律门禁
25
+ // ============================================================================
26
+ export class CommitDisciplineGate {
27
+ constructor(options = {}) {
28
+ this.stage = 'G16';
29
+ this.name = 'Commit Discipline';
30
+ this.description = 'Uncommitted changes must be within thresholds; no large files staged';
31
+ this.requiredLevel = 'M';
32
+ this.warnThreshold = options.warnThreshold ?? 10;
33
+ this.blockThreshold = options.blockThreshold ?? 25;
34
+ this.staleWarnMinutes = options.staleWarnMinutes ?? 60;
35
+ this.staleBlockMinutes = options.staleBlockMinutes ?? 180;
36
+ this.maxStagedFileBytes = options.maxStagedFileBytes ?? 1_000_000;
37
+ }
38
+ async execute() {
39
+ const blockers = [];
40
+ const evidenceItems = [];
41
+ const cwd = process.cwd();
42
+ // Check 1: Uncommitted file count
43
+ const statusOutput = gitCommand('status --porcelain', cwd);
44
+ const uncommittedFiles = statusOutput ? statusOutput.split('\n').filter(l => l.trim()) : [];
45
+ const uncommittedCount = uncommittedFiles.length;
46
+ const countPassed = uncommittedCount < this.blockThreshold;
47
+ if (uncommittedCount >= this.blockThreshold) {
48
+ blockers.push(`Uncommitted files (${uncommittedCount}) >= block threshold (${this.blockThreshold})`);
49
+ }
50
+ evidenceItems.push(createEvidence({
51
+ kind: 'command',
52
+ label: 'Uncommitted file count',
53
+ passed: countPassed,
54
+ detail: `${uncommittedFiles.length} uncommitted file(s) (warn=${this.warnThreshold}, block=${this.blockThreshold})`,
55
+ }));
56
+ // Check 2: Time since last commit
57
+ const lastCommitTime = gitCommand('log -1 --format=%ct', cwd);
58
+ if (lastCommitTime) {
59
+ const elapsed = (Date.now() / 1000) - parseInt(lastCommitTime, 10);
60
+ const elapsedMinutes = Math.floor(elapsed / 60);
61
+ const stalePassed = elapsedMinutes < this.staleBlockMinutes;
62
+ if (elapsedMinutes >= this.staleBlockMinutes) {
63
+ blockers.push(`Last commit was ${elapsedMinutes}min ago >= block threshold (${this.staleBlockMinutes}min)`);
64
+ }
65
+ evidenceItems.push(createEvidence({
66
+ kind: 'command',
67
+ label: 'Time since last commit',
68
+ passed: stalePassed,
69
+ detail: `${elapsedMinutes} minutes since last commit (warn=${this.staleWarnMinutes}, block=${this.staleBlockMinutes})`,
70
+ }));
71
+ }
72
+ // Check 3: Large staged files
73
+ const stagedOutput = gitCommand('diff --cached --name-only', cwd);
74
+ const stagedFiles = stagedOutput ? stagedOutput.split('\n').filter(Boolean) : [];
75
+ const largeFiles = [];
76
+ for (const file of stagedFiles) {
77
+ try {
78
+ const fullPath = join(cwd, file);
79
+ if (existsSync(fullPath)) {
80
+ const stat = statSync(fullPath);
81
+ if (stat.size > this.maxStagedFileBytes) {
82
+ largeFiles.push(`${file} (${(stat.size / 1024).toFixed(0)}KB)`);
83
+ }
84
+ }
85
+ }
86
+ catch {
87
+ // Skip files that can't be stat'd
88
+ }
89
+ }
90
+ const largePassed = largeFiles.length === 0;
91
+ if (!largePassed) {
92
+ blockers.push(`Large staged files detected: ${largeFiles.join(', ')}`);
93
+ }
94
+ evidenceItems.push(createEvidence({
95
+ kind: 'command',
96
+ label: 'Large staged files',
97
+ passed: largePassed,
98
+ detail: largePassed ? 'No large staged files' : `Large files: ${largeFiles.join(', ')}`,
99
+ }));
100
+ // Check 4: git diff --check (whitespace errors)
101
+ const diffCheck = gitCommand('diff --check', cwd);
102
+ const diffCheckPassed = !diffCheck;
103
+ if (!diffCheckPassed) {
104
+ blockers.push('git diff --check found whitespace errors');
105
+ }
106
+ evidenceItems.push(createEvidence({
107
+ kind: 'command',
108
+ label: 'Whitespace check',
109
+ passed: diffCheckPassed,
110
+ detail: diffCheckPassed ? 'No whitespace errors' : `Whitespace errors: ${diffCheck.slice(0, 200)}`,
111
+ }));
112
+ const passed = blockers.length === 0;
113
+ return {
114
+ gate: this.stage,
115
+ status: passed ? 'PASSED' : 'FAILED',
116
+ passed,
117
+ evidence: textEvidence(evidenceItems),
118
+ evidenceItems,
119
+ blockers,
120
+ durationMs: 0,
121
+ };
122
+ }
123
+ }
124
+ // ============================================================================
125
+ // G17: Documentation Hygiene — 文档卫生门禁
126
+ // ============================================================================
127
+ export class DocumentationHygieneGate {
128
+ constructor() {
129
+ this.stage = 'G17';
130
+ this.name = 'Documentation Hygiene';
131
+ this.description = 'Changed docs must have valid internal links and up-to-date references';
132
+ this.requiredLevel = 'M';
133
+ }
134
+ async execute() {
135
+ const blockers = [];
136
+ const evidenceItems = [];
137
+ const cwd = process.cwd();
138
+ // Check 1: Find changed markdown files
139
+ const changedMd = gitCommand('diff --name-only HEAD -- "*.md"', cwd);
140
+ const mdFiles = changedMd ? changedMd.split('\n').filter(f => f.endsWith('.md')) : [];
141
+ evidenceItems.push(createEvidence({
142
+ kind: 'command',
143
+ label: 'Changed markdown files',
144
+ passed: true,
145
+ detail: mdFiles.length > 0 ? `${mdFiles.length} markdown file(s) changed` : 'No markdown files changed',
146
+ }));
147
+ if (mdFiles.length === 0) {
148
+ return {
149
+ gate: this.stage,
150
+ status: 'PASSED',
151
+ passed: true,
152
+ evidence: textEvidence(evidenceItems),
153
+ evidenceItems,
154
+ blockers: [],
155
+ durationMs: 0,
156
+ };
157
+ }
158
+ // Check 2: Internal link validation for changed files
159
+ const brokenLinks = [];
160
+ for (const file of mdFiles) {
161
+ const fullPath = join(cwd, file);
162
+ if (!existsSync(fullPath))
163
+ continue;
164
+ try {
165
+ const content = readFileSync(fullPath, 'utf-8');
166
+ const linkPattern = /\[([^\]]*)\]\(([^)]+)\)/g;
167
+ let match;
168
+ while ((match = linkPattern.exec(content)) !== null) {
169
+ const linkTarget = match[2];
170
+ if (linkTarget.startsWith('http') || linkTarget.startsWith('#') || linkTarget.startsWith('mailto:'))
171
+ continue;
172
+ const [linkPath] = linkTarget.split('#');
173
+ if (!linkPath)
174
+ continue;
175
+ const resolvedTarget = join(cwd, require('path').dirname(file), linkPath);
176
+ if (!existsSync(resolvedTarget)) {
177
+ brokenLinks.push(`${file}: [${match[1]}](${linkTarget})`);
178
+ }
179
+ }
180
+ }
181
+ catch {
182
+ // Skip unreadable files
183
+ }
184
+ }
185
+ const linksPassed = brokenLinks.length === 0;
186
+ if (!linksPassed) {
187
+ // Broken links are warnings, not blockers for M level
188
+ evidenceItems.push(createEvidence({
189
+ kind: 'file',
190
+ label: 'Internal link check',
191
+ passed: false,
192
+ detail: `Broken links: ${brokenLinks.slice(0, 5).join('; ')}${brokenLinks.length > 5 ? ` (+${brokenLinks.length - 5} more)` : ''}`,
193
+ }));
194
+ }
195
+ else {
196
+ evidenceItems.push(createEvidence({
197
+ kind: 'file',
198
+ label: 'Internal link check',
199
+ passed: true,
200
+ detail: 'All internal links valid',
201
+ }));
202
+ }
203
+ // Check 3: Version reference freshness
204
+ const versionRefs = [];
205
+ for (const file of mdFiles) {
206
+ const fullPath = join(cwd, file);
207
+ if (!existsSync(fullPath))
208
+ continue;
209
+ try {
210
+ const content = readFileSync(fullPath, 'utf-8');
211
+ const outdatedVersionPattern = /v0\.(3[0-5])\.\d+/g;
212
+ let match;
213
+ while ((match = outdatedVersionPattern.exec(content)) !== null) {
214
+ versionRefs.push(`${file}: references ${match[0]}`);
215
+ }
216
+ }
217
+ catch {
218
+ // Skip
219
+ }
220
+ }
221
+ evidenceItems.push(createEvidence({
222
+ kind: 'file',
223
+ label: 'Version references',
224
+ passed: versionRefs.length === 0,
225
+ detail: versionRefs.length === 0 ? 'No outdated version references' : `Outdated: ${versionRefs.slice(0, 3).join('; ')}`,
226
+ }));
227
+ const passed = blockers.length === 0;
228
+ return {
229
+ gate: this.stage,
230
+ status: passed ? 'PASSED' : 'FAILED',
231
+ passed,
232
+ evidence: textEvidence(evidenceItems),
233
+ evidenceItems,
234
+ blockers,
235
+ durationMs: 0,
236
+ };
237
+ }
238
+ }
239
+ // ============================================================================
240
+ // G18: Runtime Evidence — 运行时证据门禁
241
+ // ============================================================================
242
+ export class RuntimeEvidenceGate {
243
+ constructor(scaleDir = '.scale') {
244
+ this.scaleDir = scaleDir;
245
+ this.stage = 'G18';
246
+ this.name = 'Runtime Evidence';
247
+ this.description = 'Task must have recorded runtime evidence with matching exit codes';
248
+ this.requiredLevel = 'M';
249
+ }
250
+ async execute() {
251
+ const blockers = [];
252
+ const evidenceItems = [];
253
+ // Check 1: Evidence directory exists
254
+ const evidenceDir = join(this.scaleDir, 'evidence');
255
+ if (!existsSync(evidenceDir)) {
256
+ evidenceItems.push(createEvidence({
257
+ kind: 'file',
258
+ label: 'Evidence directory',
259
+ passed: false,
260
+ detail: 'No .scale/evidence/ directory found',
261
+ }));
262
+ blockers.push('No runtime evidence directory');
263
+ return {
264
+ gate: this.stage,
265
+ status: 'BLOCKED',
266
+ passed: false,
267
+ evidence: textEvidence(evidenceItems),
268
+ evidenceItems,
269
+ blockers,
270
+ durationMs: 0,
271
+ };
272
+ }
273
+ // Check 2: Recent evidence files exist
274
+ const evidenceFiles = readdirSync(evidenceDir).filter(f => f.endsWith('.json')).sort().reverse();
275
+ const recentEvidence = evidenceFiles.slice(0, 10);
276
+ evidenceItems.push(createEvidence({
277
+ kind: 'file',
278
+ label: 'Evidence files',
279
+ passed: recentEvidence.length > 0,
280
+ detail: `${evidenceFiles.length} evidence file(s), ${recentEvidence.length} recent`,
281
+ }));
282
+ // Check 3: Evidence freshness (within 24h)
283
+ let freshEvidence = false;
284
+ if (recentEvidence.length > 0) {
285
+ try {
286
+ const latestPath = join(evidenceDir, recentEvidence[0]);
287
+ const latest = JSON.parse(readFileSync(latestPath, 'utf-8'));
288
+ const evidenceTime = new Date(latest.timestamp || latest.createdAt || 0).getTime();
289
+ const hoursSince = (Date.now() - evidenceTime) / (1000 * 60 * 60);
290
+ freshEvidence = hoursSince < 24;
291
+ evidenceItems.push(createEvidence({
292
+ kind: 'file',
293
+ label: 'Evidence freshness',
294
+ passed: freshEvidence,
295
+ detail: freshEvidence
296
+ ? `Latest evidence ${hoursSince.toFixed(1)}h ago (< 24h)`
297
+ : `Latest evidence ${hoursSince.toFixed(1)}h ago (>= 24h, stale)`,
298
+ }));
299
+ }
300
+ catch {
301
+ evidenceItems.push(createEvidence({
302
+ kind: 'file',
303
+ label: 'Evidence freshness',
304
+ passed: false,
305
+ detail: 'Could not parse latest evidence file',
306
+ }));
307
+ }
308
+ }
309
+ // Check 4: Passed evidence exists
310
+ let hasPassedEvidence = false;
311
+ for (const file of recentEvidence) {
312
+ try {
313
+ const content = JSON.parse(readFileSync(join(evidenceDir, file), 'utf-8'));
314
+ if (content.status === 'passed' || content.exitCode === 0) {
315
+ hasPassedEvidence = true;
316
+ break;
317
+ }
318
+ }
319
+ catch {
320
+ continue;
321
+ }
322
+ }
323
+ evidenceItems.push(createEvidence({
324
+ kind: 'file',
325
+ label: 'Passed evidence',
326
+ passed: hasPassedEvidence,
327
+ detail: hasPassedEvidence ? 'At least one passed evidence record found' : 'No passed evidence records found',
328
+ }));
329
+ if (!hasPassedEvidence)
330
+ blockers.push('No passed runtime evidence found');
331
+ const passed = blockers.length === 0;
332
+ return {
333
+ gate: this.stage,
334
+ status: passed ? 'PASSED' : 'BLOCKED',
335
+ passed,
336
+ evidence: textEvidence(evidenceItems),
337
+ evidenceItems,
338
+ blockers,
339
+ durationMs: 0,
340
+ };
341
+ }
342
+ }
343
+ // ============================================================================
344
+ // G19: Code Review — 代码评审门禁
345
+ // ============================================================================
346
+ export class CodeReviewGate {
347
+ constructor(scaleDir = '.scale') {
348
+ this.scaleDir = scaleDir;
349
+ this.stage = 'G19';
350
+ this.name = 'Code Review';
351
+ this.description = 'L/CRITICAL tasks require reviewed changes with resolved findings';
352
+ this.requiredLevel = 'L';
353
+ }
354
+ async execute() {
355
+ const blockers = [];
356
+ const evidenceItems = [];
357
+ // Check 1: Review artifacts exist
358
+ const reviewDir = join(this.scaleDir, 'state');
359
+ let hasReview = false;
360
+ let reviewCount = 0;
361
+ let unresolvedFindings = 0;
362
+ if (existsSync(reviewDir)) {
363
+ const stateFiles = readdirSync(reviewDir).filter(f => f.startsWith('review-') && f.endsWith('.json'));
364
+ reviewCount = stateFiles.length;
365
+ hasReview = reviewCount > 0;
366
+ for (const file of stateFiles) {
367
+ try {
368
+ const content = JSON.parse(readFileSync(join(reviewDir, file), 'utf-8'));
369
+ const findings = content.findings ?? [];
370
+ unresolvedFindings += findings.filter((f) => !f.resolved).length;
371
+ }
372
+ catch {
373
+ continue;
374
+ }
375
+ }
376
+ }
377
+ evidenceItems.push(createEvidence({
378
+ kind: 'file',
379
+ label: 'Review artifacts',
380
+ passed: hasReview,
381
+ detail: hasReview ? `${reviewCount} review file(s) found` : 'No review artifacts found',
382
+ }));
383
+ if (!hasReview) {
384
+ blockers.push('No code review artifacts found (required for L/CRITICAL)');
385
+ }
386
+ // Check 2: Unresolved findings
387
+ const findingsPassed = unresolvedFindings === 0;
388
+ if (!findingsPassed) {
389
+ blockers.push(`${unresolvedFindings} unresolved finding(s) in review`);
390
+ }
391
+ evidenceItems.push(createEvidence({
392
+ kind: 'file',
393
+ label: 'Unresolved findings',
394
+ passed: findingsPassed,
395
+ detail: findingsPassed ? 'No unresolved findings' : `${unresolvedFindings} unresolved finding(s)`,
396
+ }));
397
+ const passed = blockers.length === 0;
398
+ return {
399
+ gate: this.stage,
400
+ status: passed ? 'PASSED' : 'BLOCKED',
401
+ passed,
402
+ evidence: textEvidence(evidenceItems),
403
+ evidenceItems,
404
+ blockers,
405
+ durationMs: 0,
406
+ };
407
+ }
408
+ }
409
+ // ============================================================================
410
+ // G20: Supply Chain — 供应链安全门禁
411
+ // ============================================================================
412
+ export class SupplyChainGate {
413
+ constructor() {
414
+ this.stage = 'G20';
415
+ this.name = 'Supply Chain';
416
+ this.description = 'No CRITICAL/HIGH vulnerabilities; lock file must be consistent';
417
+ this.requiredLevel = 'ALWAYS';
418
+ }
419
+ async execute() {
420
+ const blockers = [];
421
+ const evidenceItems = [];
422
+ const cwd = process.cwd();
423
+ // Check 1: npm audit
424
+ const auditOutput = gitCommand('npm audit --json 2>/dev/null || true', cwd);
425
+ let criticalCount = 0;
426
+ let highCount = 0;
427
+ try {
428
+ const audit = JSON.parse(auditOutput);
429
+ const vulnerabilities = audit.vulnerabilities ?? {};
430
+ for (const [, vuln] of Object.entries(vulnerabilities)) {
431
+ if (vuln.severity === 'critical')
432
+ criticalCount++;
433
+ if (vuln.severity === 'high')
434
+ highCount++;
435
+ }
436
+ }
437
+ catch {
438
+ // npm audit not available or not JSON
439
+ }
440
+ const auditPassed = criticalCount === 0 && highCount === 0;
441
+ if (!auditPassed) {
442
+ blockers.push(`npm audit: ${criticalCount} critical, ${highCount} high vulnerabilities`);
443
+ }
444
+ evidenceItems.push(createEvidence({
445
+ kind: 'command',
446
+ label: 'npm audit',
447
+ passed: auditPassed,
448
+ detail: auditPassed ? 'No CRITICAL/HIGH vulnerabilities' : `${criticalCount} critical, ${highCount} high`,
449
+ }));
450
+ // Check 2: Lock file consistency
451
+ const hasLockFile = existsSync(join(cwd, 'package-lock.json')) || existsSync(join(cwd, 'pnpm-lock.yaml')) || existsSync(join(cwd, 'bun.lock'));
452
+ evidenceItems.push(createEvidence({
453
+ kind: 'file',
454
+ label: 'Lock file',
455
+ passed: hasLockFile,
456
+ detail: hasLockFile ? 'Lock file present' : 'No lock file found',
457
+ }));
458
+ // Check 3: package.json consistency (no phantom dependencies)
459
+ try {
460
+ const pkg = JSON.parse(readFileSync(join(cwd, 'package.json'), 'utf-8'));
461
+ const allDeps = {
462
+ ...(pkg.dependencies ?? {}),
463
+ ...(pkg.devDependencies ?? {}),
464
+ };
465
+ const depCount = Object.keys(allDeps).length;
466
+ evidenceItems.push(createEvidence({
467
+ kind: 'file',
468
+ label: 'Dependency count',
469
+ passed: true,
470
+ detail: `${depCount} declared dependencies`,
471
+ }));
472
+ }
473
+ catch {
474
+ // No package.json
475
+ }
476
+ const passed = blockers.length === 0;
477
+ return {
478
+ gate: this.stage,
479
+ status: passed ? 'PASSED' : 'FAILED',
480
+ passed,
481
+ evidence: textEvidence(evidenceItems),
482
+ evidenceItems,
483
+ blockers,
484
+ durationMs: 0,
485
+ };
486
+ }
487
+ }
488
+ // ============================================================================
489
+ // G21: Context Budget — 上下文预算门禁
490
+ // ============================================================================
491
+ export class ContextBudgetGate {
492
+ constructor(scaleDir = '.scale') {
493
+ this.scaleDir = scaleDir;
494
+ this.stage = 'G21';
495
+ this.name = 'Context Budget';
496
+ this.description = 'Task context must be within token budget; no redundant loading';
497
+ this.requiredLevel = 'M';
498
+ }
499
+ async execute() {
500
+ const evidenceItems = [];
501
+ // Check 1: Context budget configuration
502
+ const budgetPath = join(this.scaleDir, 'context-budget.json');
503
+ const hasBudget = existsSync(budgetPath);
504
+ evidenceItems.push(createEvidence({
505
+ kind: 'file',
506
+ label: 'Context budget config',
507
+ passed: hasBudget,
508
+ detail: hasBudget ? 'Context budget configured' : 'No context budget configuration',
509
+ }));
510
+ // Check 2: Context budget report
511
+ const reportPath = join(this.scaleDir, 'context-budget-report.json');
512
+ if (existsSync(reportPath)) {
513
+ try {
514
+ const report = JSON.parse(readFileSync(reportPath, 'utf-8'));
515
+ const totalTokens = report.summary?.totalTokens ?? 0;
516
+ const maxTokens = report.thresholds?.maxAlwaysTokens ?? 10000;
517
+ const withinBudget = totalTokens <= maxTokens;
518
+ evidenceItems.push(createEvidence({
519
+ kind: 'file',
520
+ label: 'Token budget',
521
+ passed: withinBudget,
522
+ detail: `${totalTokens} tokens used / ${maxTokens} max`,
523
+ }));
524
+ }
525
+ catch {
526
+ evidenceItems.push(createEvidence({
527
+ kind: 'file',
528
+ label: 'Token budget',
529
+ passed: false,
530
+ detail: 'Could not parse context budget report',
531
+ }));
532
+ }
533
+ }
534
+ else {
535
+ evidenceItems.push(createEvidence({
536
+ kind: 'file',
537
+ label: 'Token budget',
538
+ passed: true,
539
+ detail: 'No budget report (advisory only)',
540
+ }));
541
+ }
542
+ return {
543
+ gate: this.stage,
544
+ status: 'PASSED',
545
+ passed: true, // Advisory only, never blocks
546
+ evidence: textEvidence(evidenceItems),
547
+ evidenceItems,
548
+ blockers: [],
549
+ durationMs: 0,
550
+ };
551
+ }
552
+ }
553
+ // ============================================================================
554
+ // G22: Session Health — 会话健康门禁
555
+ // ============================================================================
556
+ export class SessionHealthGate {
557
+ constructor() {
558
+ this.stage = 'G22';
559
+ this.name = 'Session Health';
560
+ this.description = 'No leaked worktrees; session state is consistent';
561
+ this.requiredLevel = 'M';
562
+ }
563
+ async execute() {
564
+ const evidenceItems = [];
565
+ const cwd = process.cwd();
566
+ // Check 1: Stale worktrees
567
+ const worktreeLocations = [
568
+ join(cwd, '.claude', 'worktrees'),
569
+ join(cwd, '.scale', 'worktrees'),
570
+ join(cwd, '.codex', 'worktrees'),
571
+ ];
572
+ let staleWorktrees = 0;
573
+ for (const dir of worktreeLocations) {
574
+ if (existsSync(dir)) {
575
+ try {
576
+ const entries = readdirSync(dir);
577
+ staleWorktrees += entries.length;
578
+ }
579
+ catch {
580
+ // Skip
581
+ }
582
+ }
583
+ }
584
+ const worktreePassed = staleWorktrees === 0;
585
+ evidenceItems.push(createEvidence({
586
+ kind: 'file',
587
+ label: 'Stale worktrees',
588
+ passed: worktreePassed,
589
+ detail: worktreePassed ? 'No stale worktrees' : `${staleWorktrees} worktree(s) found in .claude/worktrees or .scale/worktrees`,
590
+ }));
591
+ // Check 2: Git worktree list
592
+ const gitWorktrees = gitCommand('worktree list --porcelain', cwd);
593
+ const worktreeCount = gitWorktrees ? gitWorktrees.split('\n').filter(l => l.startsWith('worktree ')).length : 0;
594
+ evidenceItems.push(createEvidence({
595
+ kind: 'command',
596
+ label: 'Git worktrees',
597
+ passed: worktreeCount <= 3,
598
+ detail: `${worktreeCount} git worktree(s)`,
599
+ }));
600
+ // Check 3: Session state file
601
+ const statePath = join(cwd, '.scale', 'state', 'current.json');
602
+ if (existsSync(statePath)) {
603
+ try {
604
+ const state = JSON.parse(readFileSync(statePath, 'utf-8'));
605
+ const hasOpenTasks = (state.openTasks ?? []).length > 0;
606
+ evidenceItems.push(createEvidence({
607
+ kind: 'file',
608
+ label: 'Session state',
609
+ passed: true,
610
+ detail: `Task: ${state.taskId ?? 'none'}, Phase: ${state.phase ?? 'none'}, Open tasks: ${state.openTasks?.length ?? 0}`,
611
+ }));
612
+ }
613
+ catch {
614
+ evidenceItems.push(createEvidence({
615
+ kind: 'file',
616
+ label: 'Session state',
617
+ passed: false,
618
+ detail: 'Could not parse session state',
619
+ }));
620
+ }
621
+ }
622
+ else {
623
+ evidenceItems.push(createEvidence({
624
+ kind: 'file',
625
+ label: 'Session state',
626
+ passed: true,
627
+ detail: 'No active session state',
628
+ }));
629
+ }
630
+ return {
631
+ gate: this.stage,
632
+ status: 'PASSED',
633
+ passed: true, // Advisory only, never blocks
634
+ evidence: textEvidence(evidenceItems),
635
+ evidenceItems,
636
+ blockers: [],
637
+ durationMs: 0,
638
+ };
639
+ }
640
+ }
641
+ // ============================================================================
642
+ // 注册所有增强门禁
643
+ // ============================================================================
644
+ export function registerEnhancedGates(gateSystem, scaleDir = '.scale') {
645
+ gateSystem.registerGate(new CommitDisciplineGate());
646
+ gateSystem.registerGate(new DocumentationHygieneGate());
647
+ gateSystem.registerGate(new RuntimeEvidenceGate(scaleDir));
648
+ gateSystem.registerGate(new CodeReviewGate(scaleDir));
649
+ gateSystem.registerGate(new SupplyChainGate());
650
+ gateSystem.registerGate(new ContextBudgetGate(scaleDir));
651
+ gateSystem.registerGate(new SessionHealthGate());
652
+ }
653
+ //# sourceMappingURL=EnhancedGates.js.map