plan_executor 1.0.2 → 1.8.0

data/fixtures/observation/observation-germline-create.xml

@@ -0,0 +1,72 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<Observation xmlns="http://hl7.org/fhir">
+	<text>
+		<status value="generated"/>
+		<div xmlns="http://www.w3.org/1999/xhtml">Apr 3, 2013 3:30:10 PM; Genetic analysis master panel; Preliminary</div>
+	</text>
+	<extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNASequenceVariation">
+		<valueString value="NG_007726.3:g.146252T&gt;G"/>
+	</extension>
+    <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariationId">
+        <valueCodeableConcept>
+            <coding>
+                <system value="http://www.genenames.org"/>
+                <code value="rs587778247"/>
+            </coding>
+        </valueCodeableConcept>
+    </extension>
+	<extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
+		<valueCodeableConcept>
+			<coding>
+				<system value="http://www.genenames.org"/>
+				<code value="3236"/>
+				<display value="EGFR"/>
+			</coding>
+		</valueCodeableConcept>
+	</extension>
+	<extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNARegionName">
+		<valueString value="Exon 21"/>
+	</extension>
+	<extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass">
+		<valueCodeableConcept>
+			<coding>
+				<system value="http://hl7.org/fhir/LOINC-48002-0-answerlist"/>
+				<code value="LA6683-2"/>
+				<display value="germline"/>
+			</coding>
+		</valueCodeableConcept>
+	</extension>
+	<identifier>
+		<system value="http://happyvalley.com/observation"/>
+		<value value="${CD9}${D7}"/>
+	</identifier>
+	<status value="preliminary"/>
+	<code>
+		<coding>
+			<system value="http://loinc.org"/>
+			<code value="55233-1"/>
+			<display value="Genetic analysis master panel"/>
+		</coding>
+	</code>
+	<subject>
+		<reference value="Patient/${createPatientId}"/>
+		<display value="Molecular Lab Patient ID: HOSP-${CD8}${D6}"/>
+	</subject>
+	<effectiveDateTime value="2013-04-03T15:30:10+01:00"/>
+	<issued value="2013-04-03T15:30:10+01:00"/>
+	<performer>
+		<reference value="Practitioner/${createPractitionerId}"/>
+		<display value="Molecular Diagnostics Laboratory"/>
+	</performer>
+	<valueCodeableConcept>
+		<coding>
+			<system value="http://snomed.info/sct"/>
+			<code value="10828004"/>
+			<display value="Positive"/>
+		</coding>
+	</valueCodeableConcept>
+	<specimen>
+		<reference value="Specimen/${createSpecimenId}"/>
+		<display value="Molecular Specimen ID: ${CD10}${D5}"/>
+	</specimen>
+</Observation>

data/fixtures/observation/observation-register-create.xml

@@ -0,0 +1,72 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<Observation xmlns="http://hl7.org/fhir">
+	<text>
+		<status value="generated"/>
+		<div xmlns="http://www.w3.org/1999/xhtml">Apr 3, 2013 3:30:10 PM; Genetic analysis master panel; Preliminary</div>
+	</text>
+	<extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNASequenceVariation">
+		<valueString value="NG_007726.3:g.146252T&gt;G"/>
+	</extension>
+    <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariationId">
+        <valueCodeableConcept>
+            <coding>
+                <system value="http://www.genenames.org"/>
+                <code value="rs587778247"/>
+            </coding>
+        </valueCodeableConcept>
+    </extension>
+	<extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
+		<valueCodeableConcept>
+			<coding>
+				<system value="http://www.genenames.org"/>
+				<code value="3236"/>
+				<display value="EGFR"/>
+			</coding>
+		</valueCodeableConcept>
+	</extension>
+	<extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNARegionName">
+		<valueString value="Exon 21"/>
+	</extension>
+	<extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass">
+		<valueCodeableConcept>
+			<coding>
+				<system value="http://hl7.org/fhir/LOINC-48002-0-answerlist"/>
+				<code value="LA6683-2"/>
+				<display value="germline"/>
+			</coding>
+		</valueCodeableConcept>
+	</extension>
+	<identifier>
+		<system value="http://happyvalley.com/observation"/>
+		<value value="${CD8}${D8}"/>
+	</identifier>
+	<status value="preliminary"/>
+	<code>
+		<coding>
+			<system value="http://loinc.org"/>
+			<code value="55233-1"/>
+			<display value="Genetic analysis master panel"/>
+		</coding>
+	</code>
+	<subject>
+		<reference value="Patient/${createPatientId}"/>
+		<display value="Molecular Lab Patient ID: HOSP-${CD5}${D12}"/>
+	</subject>
+	<effectiveDateTime value="2013-04-03T15:30:10+01:00"/>
+	<issued value="2013-04-03T15:30:10+01:00"/>
+	<performer>
+		<reference value="Practitioner/${createPractitionerId}"/>
+		<display value="Molecular Diagnostics Laboratory"/>
+	</performer>
+	<valueCodeableConcept>
+		<coding>
+			<system value="http://snomed.info/sct"/>
+			<code value="10828004"/>
+			<display value="Positive"/>
+		</coding>
+	</valueCodeableConcept>
+	<specimen>
+		<reference value="Specimen/${createSpecimenId}"/>
+		<display value="Molecular Specimen ID: MLD45-Z4-1234"/>
+	</specimen>
+</Observation>

data/fixtures/patch/medicationrequest-simple.xml

@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="utf-8"?>
+<MedicationRequest xmlns="http://hl7.org/fhir">
+    <language value="en-US"/>
+    <status value="active"/>
+    <stage>
+      <coding>
+        <code value="original-order"/>
+      </coding>
+    </stage>
+    <medicationCodeableConcept>
+        <text value="medication name"></text>
+    </medicationCodeableConcept>
+    <patient>
+      <display value="example"/>
+    </patient>
+</MedicationRequest>

data/fixtures/patient/patient-example-updated.xml

@@ -115,13 +115,7 @@
       </coding>
     </relationship>
     <name>
-      <family value="du">
-      <!--   the "du" part is a family name prefix (VV in iso 21090)   -->
-        <extension url="http://hl7.org/fhir/StructureDefinition/iso21090-EN-qualifier">
-          <valueCode value="VV"/>
-        </extension>
-      </family>
-      <family value="Marché"/>
+      <family value="du Marché"/>
       <given value="Bénédicte"/>
     </name>
     <telecom>

data/fixtures/patient/patient-example-us-extensions.xml

@@ -0,0 +1,119 @@
+<?xml version="1.0" encoding="UTF-8"?><Patient xmlns="http://hl7.org/fhir">
+	<id value="us01"/>
+	<text>
+		<status value="generated"/>
+		<div xmlns="http://www.w3.org/1999/xhtml">
+			<p>
+				<b>Generated Narrative with Details</b>
+			</p>
+			<p>
+				<b>id</b>: us01</p>
+			<p>
+				<b>active</b>: true</p>
+				<p>
+				<b>birthsex</b>: Male</p>
+			<p>
+				<b>name</b>: Peter James Chalmers (OFFICIAL)</p>
+			<p>
+				<b>telecom</b>: ph: (03) 5555 6473(WORK), person@example.org(WORK)</p>
+			<p>
+				<b>address</b>: 534 Erewhon St PleasantVille Vic 3999 (HOME)</p>
+			<p>
+				<b>race</b>: White, American Indian or Alaska Native, Asian, Shoshone, Filipino</p>
+			<p>
+				<b>ethnicity</b>: Hispanic or Latino, Dominican, Mexican</p>
+		</div>
+	</text>
+	<extension url="http://hl7.org/fhir/StructureDefinition/us-core-race">
+		<extension url="ombCategory">
+			<valueCoding>
+				<system value="http://hl7.org/fhir/v3/Race"/>
+				<code value="2106-3"/>
+				<display value="White"/>
+			</valueCoding>
+		</extension>
+		<extension url="ombCategory">
+			<valueCoding>
+				<system value="http://hl7.org/fhir/v3/Race"/>
+				<code value="1002-5"/>
+				<display value="American Indian or Alaska Native"/>
+			</valueCoding>
+		</extension>
+		<extension url="ombCategory">
+			<valueCoding>
+				<system value="http://hl7.org/fhir/v3/Race"/>
+				<code value="2028-9"/>
+				<display value="Asian"/>
+			</valueCoding>
+		</extension>
+		<extension url="detailed">
+			<valueCoding>
+				<system value="http://hl7.org/fhir/v3/Race"/>
+				<code value="1586-7"/>
+				<display value="Shoshone"/>
+			</valueCoding>
+		</extension>
+		<extension url="detailed">
+			<valueCoding>
+				<system value="http://hl7.org/fhir/v3/Race"/>
+				<code value="2036-2"/>
+				<display value="Filipino"/>
+			</valueCoding>
+		</extension>
+	</extension>
+	<extension url="http://hl7.org/fhir/StructureDefinition/us-core-ethnicity">
+		<extension url="ombCategory">
+			<valueCoding>
+				<system value="http://hl7.org/fhir/v3/Ethnicity"/>
+				<code value="2135-2"/>
+				<display value="Hispanic or Latino"/>
+			</valueCoding>
+		</extension>
+		<extension url="detailed">
+			<valueCoding>
+				<system value="http://hl7.org/fhir/v3/Ethnicity"/>
+				<code value="2184-0"/>
+				<display value="Dominican"/>
+			</valueCoding>
+		</extension>
+		<extension url="detailed">
+			<valueCoding>
+				<system value="http://hl7.org/fhir/v3/Ethnicity"/>
+				<code value="2148-5"/>
+				<display value="Mexican"/>
+			</valueCoding>
+		</extension>
+	</extension>
+	<extension url="http://hl7.org/fhir/StructureDefinition/us-core-birthsex">
+		<valueCode value="M"/>
+	</extension>
+	<active value="true"/>
+	<!--   Peter James Chalmers, but called "Jim"   -->
+	<name>
+		<use value="official"/>
+		<family value="Chalmers"/>
+		<given value="Peter"/>
+		<given value="James"/>
+	</name>
+	<telecom>
+		<system value="phone"/>
+		<value value="(03) 5555 6473"/>
+		<use value="work"/>
+	</telecom>
+	<telecom>
+		<extension url="http://hl7.org/fhir/StructureDefinition/us-core-direct">
+			<valueBoolean value="true"/>
+		</extension>
+		<system value="email"/>
+		<value value="person@example.org"/>
+		<use value="work"/>
+	</telecom>
+	<address>
+		<use value="home"/>
+		<line value="534 Erewhon St"/>
+		<city value="PleasantVille"/>
+		<district value="Orange County"/>
+		<state value="Vic"/>
+		<postalCode value="3999"/>
+	</address>
+</Patient>

data/fixtures/patient/patient-example.xml

@@ -3,49 +3,49 @@
   <text>
     <status value="generated"/>
     <div xmlns="http://www.w3.org/1999/xhtml">
-      
+
       <table>
-        
+
         <tbody>
-          
+
           <tr>
-            
+
             <td>Name</td>
-            
-            <td>Peter James 
+
+            <td>Peter James
               <b>Chalmers</b> (&quot;Jim&quot;)
             </td>
-          
+
           </tr>
-          
+
           <tr>
-            
+
             <td>Address</td>
-            
+
             <td>534 Erewhon, Pleasantville, Vic, 3999</td>
-          
+
           </tr>
-          
+
           <tr>
-            
+
             <td>Contacts</td>
-            
+
             <td>Home: unknown. Work: (03) 5555 6473</td>
-          
+
           </tr>
-          
+
           <tr>
-            
+
             <td>Id</td>
-            
+
             <td>MRN: 12345 (Acme Healthcare)</td>
-          
+
           </tr>
-        
+
         </tbody>
-      
-      </table>    
-    
+
+      </table>
+
     </div>
   </text>
 <!--   MRN assigned by ACME healthcare on 6-May 2001   -->
@@ -97,10 +97,15 @@
   <deceasedBoolean value="false"/>
   <address>
     <use value="home"/>
+    <type value="both"/>
     <line value="534 Erewhon St"/>
     <city value="PleasantVille"/>
+    <district value="Rainbow"/>
     <state value="Vic"/>
     <postalCode value="3999"/>
+    <period>
+      <start value="1974-12-25"/>
+    </period>
   </address>
   <contact>
     <relationship>
@@ -110,23 +115,37 @@
       </coding>
     </relationship>
     <name>
-      <family value="du">
+      <family value="du Marché">
       <!--   the "du" part is a family name prefix (VV in iso 21090)   -->
-        <extension url="http://hl7.org/fhir/StructureDefinition/iso21090-EN-qualifier">
-          <valueCode value="VV"/>
+        <extension url="http://hl7.org/fhir/StructureDefinition/humanname-own-prefix">
+          <valueString value="VV"/>
         </extension>
       </family>
-      <family value="Marché"/>
       <given value="Bénédicte"/>
     </name>
     <telecom>
       <system value="phone"/>
       <value value="+33 (237) 998327"/>
     </telecom>
+    <address>
+      <use value="home"/>
+      <type value="both"/>
+      <line value="534 Erewhon St"/>
+      <city value="PleasantVille"/>
+      <district value="Rainbow"/>
+      <state value="Vic"/>
+      <postalCode value="3999"/>
+      <period>
+        <start value="1974-12-25"/>
+      </period>
+    </address>
     <gender value="female"/>
     <period>
     <!--   The contact relationship started in 2012   -->
       <start value="2012"/>
     </period>
   </contact>
+  <managingOrganization>
+    <display value="Organization 1"/>
+  </managingOrganization>
 </Patient>

data/fixtures/patient/patient-familyhistory-create.xml

@@ -0,0 +1,45 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<Patient xmlns="http://hl7.org/fhir">
+	<text>
+		<status value="generated"/>
+		<div xmlns="http://www.w3.org/1999/xhtml">
+			<p>
+				<b>Generated Narrative with Details</b>
+			</p>
+			<p>
+				<b>identifier</b>: HOSP-${CD9}${D5} (USUAL)</p>
+			<p>
+				<b>name</b>: Mary Chambers (OFFICIAL)</p>
+			<p>
+				<b>gender</b>: female</p>
+			<p>
+				<b>birthDate</b>: Aug 17, 1972</p>
+			<p>
+				<b>deceased</b>: false</p>
+			<p>
+				<b>address</b>: 123 North 102nd Street Apt 4d Harrisburg PA 17102 USA (HOME)</p>
+		</div>
+	</text>
+	<identifier>
+		<use value="usual"/>
+		<system value="http://happyvalley.com/patient"/>
+		<value value="HOSP-${CD9}${D5}"/>
+	</identifier>
+	<name>
+		<use value="official"/>
+		<family value="Chambers"/>
+		<given value="Mary"/>
+	</name>
+	<gender value="female"/>
+	<birthDate value="1972-08-17"/>
+	<deceasedBoolean value="false"/>
+	<address>
+		<use value="home"/>
+		<line value="123 North 102nd Street"/>
+		<line value="Apt 4d"/>
+		<city value="Harrisburg"/>
+		<state value="PA"/>
+		<postalCode value="17102"/>
+		<country value="USA"/>
+	</address>
+</Patient>