plan_executor 1.0.2 → 1.8.0

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Files changed (420) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +1 -0
  3. data/.travis.yml +3 -2
  4. data/Gemfile +3 -6
  5. data/Gemfile.lock +52 -48
  6. data/README.md +2 -2
  7. data/fixtures/attachment/ccda_pdf.pdf +0 -0
  8. data/fixtures/attachment/ccda_pdf_base64.txt +2489 -0
  9. data/fixtures/attachment/ccda_structured.xml +1976 -0
  10. data/fixtures/attachment/ccda_unstructured.xml +2563 -0
  11. data/fixtures/daf/conformance-daf-query-responder.xml +2024 -193
  12. data/fixtures/diagnostic_report/diagnosticreport-familyhistory-create.xml +67 -0
  13. data/fixtures/diagnostic_report/diagnosticreport-hlatyping-create.xml +64 -0
  14. data/fixtures/diagnostic_report/diagnosticreport-pathologyreport-create.xml +312 -0
  15. data/fixtures/diagnostic_report/dr-100.xml +3 -3
  16. data/fixtures/diagnostic_report/dr-200.xml +5 -5
  17. data/fixtures/diagnostic_report/dr-300.xml +3 -3
  18. data/fixtures/diagnostic_report/dr-400.xml +3 -3
  19. data/fixtures/{diagnostic_order → diagnostic_request}/do-100.xml +57 -64
  20. data/fixtures/diagnostic_request/do-200.xml +73 -0
  21. data/fixtures/{diagnostic_order → diagnostic_request}/do-300.xml +73 -91
  22. data/{lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder → fixtures/diagnostic_request}/do-400.xml +74 -88
  23. data/fixtures/family_member_history/familymemberhistory-familyhistory-create.xml +27 -0
  24. data/fixtures/financial/claim-example-oral-average.xml +199 -0
  25. data/fixtures/financial/claim-example-oral-orthoplan.xml +298 -0
  26. data/fixtures/financial/claim-example.xml +98 -0
  27. data/fixtures/financial/eligibilityrequest-example.xml +40 -0
  28. data/fixtures/observation/obs-401.xml +7 -17
  29. data/fixtures/observation/obs-402.xml +7 -17
  30. data/fixtures/observation/obs-403.xml +4 -29
  31. data/fixtures/observation/obs-407.xml +4 -11
  32. data/fixtures/observation/observation-datawarehouse-create.xml +72 -0
  33. data/fixtures/observation/observation-familyhistory-create.xml +61 -0
  34. data/fixtures/observation/observation-germline-create.xml +72 -0
  35. data/fixtures/observation/observation-register-create.xml +72 -0
  36. data/fixtures/patch/medicationrequest-simple.xml +16 -0
  37. data/fixtures/patient/patient-example-updated.xml +1 -7
  38. data/fixtures/patient/patient-example-us-extensions.xml +119 -0
  39. data/fixtures/patient/patient-example.xml +46 -27
  40. data/fixtures/patient/patient-familyhistory-create.xml +45 -0
  41. data/fixtures/patient/patient-register-create.xml +47 -0
  42. data/fixtures/practitioner/practitioner-register-create.xml +32 -0
  43. data/fixtures/record/condition-example-f201-fever.xml +54 -49
  44. data/fixtures/record/condition-example-f205-infection.xml +16 -15
  45. data/fixtures/record/diagnosticreport-example-f201-brainct.xml +45 -18
  46. data/fixtures/record/encounter-example-f201-20130404.xml +42 -15
  47. data/fixtures/record/encounter-example-f202-20130128.xml +57 -15
  48. data/fixtures/record/observation-example-f202-temperature.xml +85 -60
  49. data/fixtures/record/organization-example-f201-aumc.xml +87 -4
  50. data/fixtures/record/organization-example-f203-bumc.xml +53 -4
  51. data/fixtures/record/patient-example-f201-roel.xml +108 -8
  52. data/fixtures/record/practitioner-example-f201-ab.xml +73 -14
  53. data/fixtures/record/procedure-example-f201-tpf.xml +39 -9
  54. data/fixtures/scheduling/slot-simple.xml +1 -1
  55. data/fixtures/sequence/sequence-register-create.xml +31 -0
  56. data/fixtures/specimen/spec-100.xml +8 -8
  57. data/fixtures/specimen/spec-400.xml +11 -11
  58. data/fixtures/specimen/spec-uslab-example1.xml +11 -11
  59. data/fixtures/specimen/specimen-familyhistory-create.xml +54 -0
  60. data/fixtures/specimen/specimen-register-create.xml +49 -0
  61. data/fixtures/terminology/codesystem-data-types.json +230 -0
  62. data/fixtures/terminology/codesystem-resource-types.json +482 -0
  63. data/fixtures/terminology/codesystem-simple.xml +129 -0
  64. data/fixtures/terminology/conceptmap-example.xml +141 -0
  65. data/fixtures/terminology/v2-codesystem.json +1297 -0
  66. data/fixtures/terminology/v2-valueset.json +16 -0
  67. data/fixtures/terminology/valueset-defined-types.json +25 -0
  68. data/fixtures/terminology/valueset-example.xml +111 -0
  69. data/fixtures/validation/observation.profile.xml +1534 -253
  70. data/fixtures/validation/observations/observation-example.xml +66 -0
  71. data/lib/FHIR_structure.json +129 -82
  72. data/lib/daf_resource_generator.rb +7 -7
  73. data/lib/data/resources.rb +50 -30
  74. data/lib/ext/client.rb +2 -2
  75. data/lib/plan_executor.rb +6 -1
  76. data/lib/resource_generator.rb +413 -212
  77. data/lib/tasks/tasks.rake +151 -20
  78. data/lib/tests/assertions.rb +24 -18
  79. data/lib/tests/base_test.rb +17 -3
  80. data/lib/tests/suites/argonaut_provider_connectathon_test.rb +234 -0
  81. data/lib/tests/suites/base_suite.rb +7 -3
  82. data/lib/tests/suites/connectathon_attachment_track_test.rb +124 -0
  83. data/lib/tests/suites/connectathon_audit_track.rb +113 -69
  84. data/lib/tests/suites/connectathon_care_plan_track.rb +237 -0
  85. data/lib/tests/suites/connectathon_fetch_patient_record.rb +40 -39
  86. data/lib/tests/suites/connectathon_financial_track.rb +231 -23
  87. data/lib/tests/suites/connectathon_genomics_track_test.rb +255 -0
  88. data/lib/tests/suites/connectathon_lab_order_track.rb +131 -104
  89. data/lib/tests/suites/connectathon_patch_track.rb +125 -0
  90. data/lib/tests/suites/connectathon_patient_track.rb +75 -68
  91. data/lib/tests/suites/connectathon_profile_validation.rb +9 -8
  92. data/lib/tests/suites/connectathon_scheduling_track.rb +127 -70
  93. data/lib/tests/suites/connectathon_terminology_track.rb +211 -34
  94. data/lib/tests/suites/daf_profiles_test.rb +112 -72
  95. data/lib/tests/suites/format_test.rb +113 -255
  96. data/lib/tests/suites/history_test.rb +72 -68
  97. data/lib/tests/suites/read_test.rb +31 -27
  98. data/lib/tests/suites/resource_test.rb +283 -85
  99. data/lib/tests/suites/search_test.rb +5 -3
  100. data/lib/tests/suites/search_test_robust.rb +8 -76
  101. data/lib/tests/suites/sprinkler_search_test.rb +104 -84
  102. data/lib/tests/suites/suite_engine.rb +17 -23
  103. data/lib/tests/suites/transaction_test.rb +117 -174
  104. data/lib/tests/testscripts/base_testscript.rb +425 -189
  105. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-base-client-id-json.xml +517 -0
  106. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-base-client-id-xml.xml +517 -0
  107. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-bonus-client-id-json.xml +648 -0
  108. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-bonus-client-id-xml.xml +648 -0
  109. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/README.html +68 -0
  110. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-base-server-id-json.xml +515 -0
  111. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-base-server-id-xml.xml +515 -0
  112. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-bonus-server-id-json.xml +645 -0
  113. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-bonus-server-id-xml.xml +642 -0
  114. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/capabilities/PatientCapabilityStatement.xml +43 -0
  115. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers-min.json +1 -3
  116. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers-min.xml +0 -0
  117. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers.json +5 -10
  118. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers.xml +5 -5
  119. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers-min.json +1 -3
  120. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers-min.xml +0 -0
  121. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers.json +5 -10
  122. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers.xml +4 -5
  123. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-PeterChalmers.json +96 -0
  124. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-PeterChalmers.xml +103 -0
  125. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-bonus-PeterChalmers.json +104 -0
  126. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-bonus-PeterChalmers.xml +108 -0
  127. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers-min.json +1 -3
  128. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers-min.xml +0 -0
  129. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers.json +6 -10
  130. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers.xml +6 -5
  131. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers-min.json +1 -3
  132. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers-min.xml +0 -0
  133. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers.json +7 -11
  134. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers.xml +5 -5
  135. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers-min.json +2 -4
  136. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers-min.xml +1 -1
  137. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers.json +7 -11
  138. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers.xml +8 -7
  139. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/01-RegisterPatient/connectathon-14-patient-fhirclient-01-register-client-id-xml.xml +306 -0
  140. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/01-RegisterPatient/connectathon-14-patient-fhirclient-01-register-server-id-xml.xml +317 -0
  141. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/02-PatientUpdate/connectathon-14-patient-fhirclient-02-update-client-id-xml.xml +346 -0
  142. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/02-PatientUpdate/connectathon-14-patient-fhirclient-02-update-server-id-xml.xml +385 -0
  143. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/capabilities/PatientCapabilityStatement.json +50 -0
  144. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient/_reference/conformance/PatientConformance.xml → scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/capabilities/PatientCapabilityStatement.xml} +10 -2
  145. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-client-id.json +21 -0
  146. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-client-id.xml +15 -0
  147. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-server-id.json +20 -0
  148. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-server-id.xml +14 -0
  149. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-client-id.json +21 -0
  150. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-client-id.xml +15 -0
  151. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-server-id.json +20 -0
  152. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-server-id.xml +14 -0
  153. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-client-id-json.xml +262 -0
  154. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-client-id-xml.xml +262 -0
  155. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-server-id-json.xml +273 -0
  156. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-server-id-xml.xml +273 -0
  157. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-client-id-json.xml +290 -0
  158. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-client-id-xml.xml +290 -0
  159. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-server-id-json.xml +326 -0
  160. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-server-id-xml.xml +326 -0
  161. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-client-id-json.xml +247 -0
  162. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-client-id-xml.xml +247 -0
  163. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-server-id-json.xml +282 -0
  164. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-server-id-xml.xml +281 -0
  165. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-client-id-json.xml +330 -0
  166. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-client-id-xml.xml +330 -0
  167. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-server-id-json.xml +366 -0
  168. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-server-id-xml.xml +366 -0
  169. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-client-id-json.xml +527 -0
  170. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-client-id-xml.xml +527 -0
  171. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-server-id-json.xml +519 -0
  172. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-server-id-xml.xml +519 -0
  173. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-client-id-json.xml +290 -0
  174. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-client-id-xml.xml +290 -0
  175. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-server-id-json.xml +288 -0
  176. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-server-id-xml.xml +288 -0
  177. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-client-id-json.xml +252 -0
  178. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-client-id-xml.xml +252 -0
  179. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-server-id-json.xml +284 -0
  180. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-server-id-xml.xml +284 -0
  181. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-client-id-json.xml +897 -0
  182. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-client-id-xml.xml +897 -0
  183. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-server-id-json.xml +963 -0
  184. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-server-id-xml.xml +963 -0
  185. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/capabilities/PatientCapabilityStatement.json +50 -0
  186. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/capabilities/PatientCapabilityStatement.xml +42 -0
  187. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-client-id.json +86 -0
  188. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-client-id.xml +62 -0
  189. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-server-id.json +85 -0
  190. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-server-id.xml +61 -0
  191. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-client-id.json +86 -0
  192. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-client-id.xml +62 -0
  193. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-server-id.json +86 -0
  194. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-server-id.xml +62 -0
  195. data/lib/tests/testscripts/scripts/spec/_reference/resources/patient-example-update.json +145 -0
  196. data/lib/tests/testscripts/scripts/spec/_reference/resources/patient-example.json +146 -0
  197. data/lib/tests/testscripts/scripts/spec/testscript-example-history.xml +191 -0
  198. data/lib/tests/testscripts/scripts/spec/testscript-example-multisystem.xml +190 -0
  199. data/lib/tests/testscripts/scripts/spec/testscript-example-readtest.xml +178 -0
  200. data/lib/tests/testscripts/scripts/spec/testscript-example-rule.xml +266 -0
  201. data/lib/tests/testscripts/scripts/spec/testscript-example-search.xml +177 -0
  202. data/lib/tests/testscripts/scripts/spec/testscript-example-update.xml +163 -0
  203. data/lib/tests/testscripts/scripts/spec/testscript-example.xml +228 -0
  204. data/lib/tests/testscripts/testscript_engine.rb +36 -22
  205. data/logs/.keep +0 -0
  206. data/plan_executor.gemspec +11 -3
  207. data/test/test_helper.rb +3 -3
  208. data/test/unit/fixtures_test.rb +24 -24
  209. data/test/unit/metadata_test.rb +19 -9
  210. data/test/unit/resource_generator_test.rb +20 -0
  211. metadata +244 -249
  212. data/fixtures/diagnostic_order/do-200.xml +0 -121
  213. data/fixtures/diagnostic_order/do-400.xml +0 -88
  214. data/fixtures/financial/claim-example-average.xml +0 -168
  215. data/fixtures/financial/claim-example-simple.xml +0 -67
  216. data/fixtures/order/order-100.xml +0 -61
  217. data/fixtures/order/order-200.xml +0 -61
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  398. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-400.xml +0 -70
  399. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-uslab-example1.xml +0 -82
  400. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 1 Document.txt +0 -122
  401. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 2 Document.txt +0 -103
  402. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 3 Document.txt +0 -201
  403. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 4 Document.txt +0 -310
  404. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/MedicationStatementCreate.xml +0 -11
  405. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/PatientSearchType.xml +0 -15
  406. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-create.json +0 -39
  407. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-patch.json +0 -3
  408. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json-if-match.xml +0 -321
  409. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json.xml +0 -303
  410. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-peer2peer-patient-json.xml +0 -235
  411. data/test/fixtures/testscript-example.xml +0 -202
  412. data/test/fixtures/testscript-history.xml +0 -143
  413. data/test/fixtures/testscript-readtest.xml +0 -272
  414. data/test/fixtures/testscript-search.xml +0 -282
  415. data/test/fixtures/testscript-update.xml +0 -147
  416. data/test/unit/argonaut_sprint6_test.rb +0 -31
  417. data/test/unit/argonaut_sprint7_test.rb +0 -21
  418. data/test/unit/basic_test.rb +0 -27
  419. data/test/unit/fetch_patient_record_test.rb +0 -357
  420. data/test/unit/financial_test.rb +0 -41
@@ -13,7 +13,7 @@ module Crucible
13
13
  {"SearchTest_#{@resource_class.name.demodulize}" => execute_test_methods}
14
14
  else
15
15
  results = {}
16
- fhir_resources.each do | klass |
16
+ Crucible::Tests::BaseSuite.fhir_resources.each do | klass |
17
17
  @resource_class = klass
18
18
  results.merge!({"SearchTest_#{@resource_class.name.demodulize}" => execute_test_methods})
19
19
  end
@@ -56,14 +56,14 @@ module Crucible
56
56
  # 3. Perform suite of tests against each resource.
57
57
  #
58
58
  def setup
59
- @conformance = @client.conformanceStatement if @conformance.nil?
59
+ @conformance = @client.conformance_statement if @conformance.nil?
60
60
 
61
61
  @canSearchById = false
62
62
 
63
63
  unless @conformance.nil?
64
64
  @conformance.rest.each do |rest|
65
65
  rest.resource.each do |resource|
66
- @searchParams = resource.searchParam if(resource.fhirType.downcase == "#{@resource_class.name.demodulize.downcase}" )
66
+ @searchParams = resource.searchParam if(resource.type.downcase == "#{@resource_class.name.demodulize.downcase}" )
67
67
  end
68
68
  end
69
69
  end
@@ -203,6 +203,8 @@ module Crucible
203
203
  count = (reply.resource.total-replyB.resource.total).abs
204
204
  assert (count <= 1), 'Searching without criteria did not return all the results.'
205
205
  else
206
+ assert !replyB.resource.nil?, 'Searching without criteria did not return all the results.'
207
+ assert !reply.resource.nil?, 'Searching without criteria did not return all the results.'
206
208
  assert_equal replyB.resource.total, reply.resource.total, 'Searching without criteria did not return all the results.'
207
209
  end
208
210
  end
@@ -16,84 +16,16 @@ module Crucible
16
16
  end
17
17
 
18
18
  def setup
19
- # Create a patient with gender:missing
20
- @resources = Crucible::Generator::Resources.new
21
- @patient = @resources.minimal_patient
22
- @patient.identifier = [FHIR::Identifier.new]
23
- @patient.identifier[0].value = SecureRandom.urlsafe_base64
24
- result = @client.create(@patient)
25
- @patient_id = result.id
26
-
27
- # read all the patients
28
- @read_entire_feed=true
29
- @client.use_format_param = true
30
- reply = @client.read_feed(FHIR::Patient)
31
- @read_entire_feed=false if (!reply.nil? && reply.code!=200)
32
- @total_count = 0
33
- @entries = []
34
-
35
- while reply != nil && !reply.resource.nil?
36
- @total_count += reply.resource.entry.size
37
- @entries += reply.resource.entry
38
- reply = @client.next_page(reply)
39
- @read_entire_feed=false if (!reply.nil? && reply.code!=200)
40
- end
41
-
42
- # create a condition matching the first patient
43
- @condition = ResourceGenerator.generate(FHIR::Condition,1)
44
- @condition['patient'] = ResourceGenerator.generate(FHIR::Reference)
45
- @condition.patient.xmlId = @entries.try(:[],0).try(:resource).try(:xmlId)
46
- options = {
47
- :id => @entries.try(:[],0).try(:resource).try(:xmlId),
48
- :resource => @entries.try(:[],0).try(:resource).try(:class)
49
- }
50
- temp = @client.use_format_param
51
- @client.use_format_param = false
52
- patient_url = @client.resource_url(options)
53
- patient_url = patient_url[1..-1] if patient_url[0]=='/'
54
- @client.use_format_param = temp
55
- @condition.patient.reference = patient_url
56
- reply = @client.create(@condition)
57
- @condition_id = reply.id
58
-
59
- # create some observations
60
- @obs_a = create_observation(4.12345)
61
- @obs_b = create_observation(4.12346)
62
- @obs_c = create_observation(4.12349)
63
- @obs_d = create_observation(5.12)
64
- @obs_e = create_observation(6.12)
65
- end
66
-
67
- def create_observation(value)
68
- observation = FHIR::Observation.new
69
- observation.status = 'preliminary'
70
- code = FHIR::Coding.new
71
- code.system = 'http://loinc.org'
72
- code.code = '2164-2'
73
- observation.code = FHIR::CodeableConcept.new
74
- observation.code.coding = [ code ]
75
- observation.valueQuantity = FHIR::Quantity.new
76
- observation.valueQuantity.system = 'http://unitofmeasure.org'
77
- observation.valueQuantity.value = value
78
- observation.valueQuantity.unit = 'mmol'
79
- body = FHIR::Coding.new
80
- body.system = 'http://snomed.info/sct'
81
- body.code = '182756003'
82
- observation.bodySite = FHIR::CodeableConcept.new
83
- observation.bodySite.coding = [ body ]
84
- reply = @client.create(observation)
85
- reply.id
19
+ # Create a patient
20
+ patient = Crucible::Generator::Resources.new.minimal_patient
21
+ patient.identifier = [FHIR::Identifier.new]
22
+ patient.identifier[0].value = SecureRandom.urlsafe_base64
23
+ ignore_client_exception { @patient = FHIR::Patient.create(patient) }
24
+ assert @patient, "Response code #{@client.reply.code} on patient creation."
86
25
  end
87
26
 
88
27
  def teardown
89
- @client.use_format_param = false
90
- @client.destroy(FHIR::Patient, @patient_id) if @patient_id
91
- @client.destroy(FHIR::Condition, @condition_id) if @condition_id
92
- @client.destroy(FHIR::Observation, @obs_a) if @obs_a
93
- @client.destroy(FHIR::Observation, @obs_b) if @obs_b
94
- @client.destroy(FHIR::Observation, @obs_c) if @obs_c
95
- @client.destroy(FHIR::Observation, @obs_d) if @obs_d
96
- @client.destroy(FHIR::Observation, @obs_e) if @obs_e
28
+ ignore_client_exception { @patient.destroy }
97
29
  end
98
30
 
99
31
  [true,false].each do |flag|
@@ -127,7 +59,7 @@ module Crucible
127
59
  entry_has_mpi_data = false
128
60
  if entry.search
129
61
  entry.search.extension.each do |e|
130
- if (e.url=='http://hl7.org/fhir/StructureDefinition/patient-mpi-match' && e.value && e.value.type=='code' && ['certain','probable','possible','certainly-not'].include?(e.value.value))
62
+ if (e.url=='http://hl7.org/fhir/StructureDefinition/patient-mpi-match' && e.value && ['certain','probable','possible','certainly-not'].include?(e.valueCode))
131
63
  entry_has_mpi_data = true
132
64
  end
133
65
  end
@@ -23,6 +23,7 @@ module Crucible
23
23
  @patient = @resources.minimal_patient
24
24
  @patient.identifier = [FHIR::Identifier.new]
25
25
  @patient.identifier[0].value = SecureRandom.urlsafe_base64
26
+ @patient.gender = nil
26
27
  result = @client.create(@patient)
27
28
  @patient_id = result.id
28
29
 
@@ -42,30 +43,18 @@ module Crucible
42
43
  end
43
44
 
44
45
  # create a condition matching the first patient
45
- @condition = ResourceGenerator.generate(FHIR::Condition,1)
46
- @condition['patient'] = ResourceGenerator.generate(FHIR::Reference)
47
- @condition.patient.xmlId = @entries.try(:[],0).try(:resource).try(:xmlId)
48
- options = {
49
- :id => @entries.try(:[],0).try(:resource).try(:xmlId),
50
- :resource => @entries.try(:[],0).try(:resource).try(:class)
51
- }
52
-
53
- temp = @client.use_format_param
54
- @client.use_format_param = false
55
- patient_url = @client.resource_url(options)
56
- patient_url = patient_url[1..-1] if patient_url[0]=='/'
57
- @condition.patient.reference = patient_url
58
- @client.use_format_param = temp
59
-
46
+ @condition = ResourceGenerator.generate(FHIR::Condition,3)
47
+ @condition.subject = @entries.first.try(:resource).try(:to_reference)
60
48
  reply = @client.create(@condition)
61
49
  @condition_id = reply.id
62
50
 
63
51
  # create some observations
64
- @obs_a = create_observation(4.12345)
65
- @obs_b = create_observation(4.12346)
66
- @obs_c = create_observation(4.12349)
67
- @obs_d = create_observation(5.12)
68
- @obs_e = create_observation(6.12)
52
+ @obs_a = create_observation(2.0)
53
+ @obs_b = create_observation(1.96)
54
+ @obs_c = create_observation(2.04)
55
+ @obs_d = create_observation(1.80)
56
+ @obs_e = create_observation(5.12)
57
+ @obs_f = create_observation(6.12)
69
58
  end
70
59
 
71
60
  def create_observation(value)
@@ -98,6 +87,7 @@ module Crucible
98
87
  @client.destroy(FHIR::Observation, @obs_c) if @obs_c
99
88
  @client.destroy(FHIR::Observation, @obs_d) if @obs_d
100
89
  @client.destroy(FHIR::Observation, @obs_e) if @obs_e
90
+ @client.destroy(FHIR::Observation, @obs_f) if @obs_f
101
91
  end
102
92
 
103
93
  [true,false].each do |flag|
@@ -139,7 +129,7 @@ module Crucible
139
129
  }
140
130
  }
141
131
  reply = @client.search_all(options)
142
- assert( (reply.code >= 400 && reply.code < 600), 'If the search fails, the return value should be status code 4xx or 5xx.', reply.body)
132
+ assert( (reply.code >= 400 && reply.code < 600), 'If the search fails, the return value should be status code 4xx or 5xx.', reply)
143
133
  end
144
134
 
145
135
  test "SE03#{action[0]}",'Search patient resource on partial family surname' do
@@ -150,8 +140,8 @@ module Crucible
150
140
  validates resource: "Patient", methods: ["search"]
151
141
  }
152
142
  skip unless @read_entire_feed
153
- search_string = @patient.name[0].family[0][0..2]
154
- search_regex = Regexp.new(search_string)
143
+ search_string = @patient.name[0].family[0..2]
144
+ search_regex = Regexp.new(search_string, Regexp::IGNORECASE)
155
145
  # how many patients in the bundle have matching names?
156
146
  expected = 0
157
147
  @entries.each do |entry|
@@ -160,10 +150,8 @@ module Crucible
160
150
  if !patient.nil? && !patient.name.nil?
161
151
  patient.name.each do |name|
162
152
  if !name.family.nil?
163
- name.family.each do |family|
164
- if !(family =~ search_regex).nil?
165
- isMatch = true
166
- end
153
+ if !(name.family =~ search_regex).nil?
154
+ isMatch = true
167
155
  end
168
156
  end
169
157
  end
@@ -183,7 +171,7 @@ module Crucible
183
171
  reply = @client.search(FHIR::Patient, options)
184
172
  assert_response_ok(reply)
185
173
  assert_bundle_response(reply)
186
- assert_equal expected, reply.resource.total, 'The server did not report the correct number of results.'
174
+ assert_equal expected, reply.resource.total, 'The server did not report the expected number of results.'
187
175
  end
188
176
 
189
177
  test "SE04#{action[0]}", 'Search patient resource on given name' do
@@ -195,7 +183,7 @@ module Crucible
195
183
  }
196
184
  skip unless @read_entire_feed
197
185
  search_string = @patient.name[0].given[0]
198
- search_regex = Regexp.new(search_string)
186
+ search_regex = Regexp.new(search_string, Regexp::IGNORECASE)
199
187
  # how many patients in the bundle have matching names?
200
188
  expected = 0
201
189
  @entries.each do |entry|
@@ -227,7 +215,7 @@ module Crucible
227
215
  reply = @client.search(FHIR::Patient, options)
228
216
  assert_response_ok(reply)
229
217
  assert_bundle_response(reply)
230
- assert_equal expected, reply.resource.total, 'The server did not report the correct number of results.'
218
+ assert_equal expected, reply.resource.total, 'The server did not report the expected number of results.'
231
219
  end
232
220
 
233
221
  test "SE05.0#{action[0]}", 'Search condition by patient reference url (partial)' do
@@ -239,31 +227,22 @@ module Crucible
239
227
  }
240
228
  skip unless @read_entire_feed
241
229
  # pick some search parameters... we previously created
242
- # a condition for the first (0-index) patient in the setup method.
243
- options = {
244
- :id => @entries[0].resource.xmlId,
245
- :resource => @entries[0].resource.class
246
- }
247
- temp = @client.use_format_param
248
- @client.use_format_param = false
249
- patient_url = @client.resource_url(options)
250
- patient_url = patient_url[1..-1] if patient_url[0]=='/'
251
- @client.use_format_param = temp
252
-
253
230
  # next, we're going execute a series of searches for conditions referencing the patient
254
231
  options = {
255
232
  :search => {
256
233
  :flag => flag,
257
234
  :compartment => nil,
258
235
  :parameters => {
259
- 'patient' => patient_url
236
+ 'patient' => @entries.first.resource.to_reference.reference
260
237
  }
261
238
  }
262
239
  }
263
240
  reply = @client.search(FHIR::Condition, options)
264
241
  assert_response_ok(reply)
265
242
  assert_bundle_response(reply)
266
- assert_equal 1, reply.resource.total, 'The server did not report the correct number of results.'
243
+ reply.resource.entry.each do |e|
244
+ assert((e.resource.subject.reference == @entries.first.resource.to_reference.reference),"The search returned a Condition that doesn't match the Patient.")
245
+ end
267
246
  end
268
247
 
269
248
  test "SE05.0F#{action[0]}", 'Search condition by patient reference url (full)' do
@@ -275,9 +254,8 @@ module Crucible
275
254
  }
276
255
  skip unless @read_entire_feed
277
256
  # pick some search parameters... we previously created
278
- # a condition for the first (0-index) patient in the setup method.
279
257
  options = {
280
- :id => @entries[0].resource.xmlId,
258
+ :id => @entries[0].resource.id,
281
259
  :resource => @entries[0].resource.class
282
260
  }
283
261
  temp = @client.use_format_param
@@ -298,7 +276,9 @@ module Crucible
298
276
  reply = @client.search(FHIR::Condition, options)
299
277
  assert_response_ok(reply)
300
278
  assert_bundle_response(reply)
301
- assert_equal 1, reply.resource.total, 'The server did not report the correct number of results.'
279
+ reply.resource.entry.each do |e|
280
+ assert((e.resource.subject.reference == @entries.first.resource.to_reference.reference),"The search returned a Condition that doesn't match the Patient.")
281
+ end
302
282
  end
303
283
 
304
284
  test "SE05.1#{action[0]}", 'Search condition by patient reference id' do
@@ -310,8 +290,7 @@ module Crucible
310
290
  }
311
291
  skip unless @read_entire_feed
312
292
  # pick some search parameters... we previously created
313
- # a condition for the first (0-index) patient in the setup method.
314
- patient_id = @entries[0].resource.xmlId
293
+ patient_id = @entries[0].resource.id
315
294
 
316
295
  # next, we're going execute a series of searches for conditions referencing the patient
317
296
  options = {
@@ -326,7 +305,9 @@ module Crucible
326
305
  reply = @client.search(FHIR::Condition, options)
327
306
  assert_response_ok(reply)
328
307
  assert_bundle_response(reply)
329
- assert_equal 1, reply.resource.total, 'The server did not report the correct number of results.'
308
+ reply.resource.entry.each do |e|
309
+ assert((e.resource.subject.reference == @entries.first.resource.to_reference.reference),"The search returned a Condition that doesn't match the Patient.")
310
+ end
330
311
  end
331
312
 
332
313
  test "SE05.2#{action[0]}", 'Search condition by patient:Patient reference url' do
@@ -338,9 +319,8 @@ module Crucible
338
319
  }
339
320
  skip unless @read_entire_feed
340
321
  # pick some search parameters... we previously created
341
- # a condition for the first (0-index) patient in the setup method.
342
322
  options = {
343
- :id => @entries[0].resource.xmlId,
323
+ :id => @entries[0].resource.id,
344
324
  :resource => @entries[0].resource.class
345
325
  }
346
326
  temp = @client.use_format_param
@@ -362,7 +342,9 @@ module Crucible
362
342
  reply = @client.search(FHIR::Condition, options)
363
343
  assert_response_ok(reply)
364
344
  assert_bundle_response(reply)
365
- assert_equal 1, reply.resource.total, 'The server did not report the correct number of results.'
345
+ reply.resource.entry.each do |e|
346
+ assert((e.resource.subject.reference == @entries.first.resource.to_reference.reference),"The search returned a Condition that doesn't match the Patient.")
347
+ end
366
348
  end
367
349
 
368
350
  test "SE05.3#{action[0]}", 'Search condition by patient:Patient reference id' do
@@ -374,9 +356,8 @@ module Crucible
374
356
  }
375
357
  skip unless @read_entire_feed
376
358
  # pick some search parameters... we previously created
377
- # a condition for the first (0-index) patient in the setup method.
378
359
  patient = @entries[0].resource
379
- patient_id = @entries[0].resource.xmlId
360
+ patient_id = @entries[0].resource.id
380
361
 
381
362
  # next, we're going execute a series of searches for conditions referencing the patient
382
363
  options = {
@@ -391,7 +372,9 @@ module Crucible
391
372
  reply = @client.search(FHIR::Condition, options)
392
373
  assert_response_ok(reply)
393
374
  assert_bundle_response(reply)
394
- assert_equal 1, reply.resource.total, 'The server did not report the correct number of results.'
375
+ reply.resource.entry.each do |e|
376
+ assert((e.resource.subject.reference == @entries.first.resource.to_reference.reference),"The search returned a Condition that doesn't match the Patient.")
377
+ end
395
378
  end
396
379
 
397
380
  test "SE05.4#{action[0]}", 'Search condition by patient:_id reference' do
@@ -403,8 +386,7 @@ module Crucible
403
386
  }
404
387
  skip unless @read_entire_feed
405
388
  # pick some search parameters... we previously created
406
- # a condition for the first (0-index) patient in the setup method.
407
- patient_id = @entries[0].resource.xmlId
389
+ patient_id = @entries[0].resource.id
408
390
 
409
391
  # next, we're going execute a series of searches for conditions referencing the patient
410
392
  options = {
@@ -419,10 +401,12 @@ module Crucible
419
401
  reply = @client.search(FHIR::Condition, options)
420
402
  assert_response_ok(reply)
421
403
  assert_bundle_response(reply)
422
- assert_equal 1, reply.resource.total, 'The server did not report the correct number of results.'
404
+ reply.resource.entry.each do |e|
405
+ assert((e.resource.subject.reference == @entries.first.resource.to_reference.reference),"The search returned a Condition that doesn't match the Patient.")
406
+ end
423
407
  end
424
408
 
425
- test "SE05.5#{action[0]}", 'Search condition by patient:name reference' do
409
+ test "SE05.5#{action[0]}", 'Search condition by patient.name reference' do
426
410
  metadata {
427
411
  links "#{REST_SPEC_LINK}#search"
428
412
  links "#{BASE_SPEC_LINK}/search.html"
@@ -431,8 +415,7 @@ module Crucible
431
415
  }
432
416
  skip unless @read_entire_feed
433
417
  # pick some search parameters... we previously created
434
- # a condition for the first (0-index) patient in the setup method.
435
- patient_name = @patient.name[0].family[0]
418
+ patient_name = @patient.name[0].family
436
419
 
437
420
  # next, we're going execute a series of searches for conditions referencing the patient
438
421
  options = {
@@ -447,10 +430,12 @@ module Crucible
447
430
  reply = @client.search(FHIR::Condition, options)
448
431
  assert_response_ok(reply)
449
432
  assert_bundle_response(reply)
450
- assert_equal 1, reply.resource.total, 'The server did not report the correct number of results.'
433
+ reply.resource.entry.each do |e|
434
+ assert((e.resource.subject.reference == @entries.first.resource.to_reference.reference),"The search returned a Condition that doesn't match the Patient.")
435
+ end
451
436
  end
452
437
 
453
- test "SE05.6#{action[0]}", 'Search condition by patient:identifier reference' do
438
+ test "SE05.6#{action[0]}", 'Search condition by patient.identifier reference' do
454
439
  metadata {
455
440
  links "#{REST_SPEC_LINK}#search"
456
441
  links "#{BASE_SPEC_LINK}/search.html"
@@ -459,7 +444,6 @@ module Crucible
459
444
  }
460
445
  skip unless @patient_id
461
446
  # pick some search parameters... we previously created
462
- # a condition for the first (0-index) patient in the setup method.
463
447
  patient_identifier = @patient.identifier[0].value
464
448
 
465
449
  # next, we're going execute a series of searches for conditions referencing the patient
@@ -475,7 +459,9 @@ module Crucible
475
459
  reply = @client.search(FHIR::Condition, options)
476
460
  assert_response_ok(reply)
477
461
  assert_bundle_response(reply)
478
- assert_equal 1, reply.resource.total, 'The server did not report the correct number of results.'
462
+ reply.resource.entry.each do |e|
463
+ assert((e.resource.subject.reference == @entries.first.resource.to_reference.reference),"The search returned a Condition that doesn't match the Patient.")
464
+ end
479
465
  end
480
466
 
481
467
  test "SE06#{action[0]}", 'Search condition and _include' do
@@ -485,10 +471,7 @@ module Crucible
485
471
  links "#{BASE_SPEC_LINK}/condition.html#search"
486
472
  validates resource: "Condition", methods: ["search"]
487
473
  }
488
- skip unless @patient_id
489
- # pick some search parameters... we previously created
490
- # a condition for the first (0-index) patient in the setup method.
491
- patient_identifier = @patient.identifier[0].value
474
+ skip unless @condition_id
492
475
 
493
476
  # next, we're going execute a series of searches for conditions referencing the patient
494
477
  options = {
@@ -496,7 +479,8 @@ module Crucible
496
479
  :flag => flag,
497
480
  :compartment => nil,
498
481
  :parameters => {
499
- '_include' => 'Condition:patient'
482
+ '_include' => 'Condition:patient',
483
+ '_id' => @condition_id
500
484
  }
501
485
  }
502
486
  }
@@ -506,11 +490,42 @@ module Crucible
506
490
  assert reply.resource.total > 0, 'The server should have Conditions that _include=Condition:patient.'
507
491
  has_patient = false
508
492
  reply.resource.entry.each do |entry|
509
- has_patient = true if (entry.resourceType == 'Patient')
493
+ has_patient = true if (entry.resource && entry.resource.class == FHIR::Patient)
510
494
  end
511
495
  assert(has_patient,'The server did not include the Patient referenced in the Condition.', reply.body)
512
496
  end
513
497
 
498
+ test "SE07#{action[0]}", 'Search patient and _revinclude' do
499
+ metadata {
500
+ links "#{REST_SPEC_LINK}#search"
501
+ links "#{BASE_SPEC_LINK}/search.html"
502
+ links "#{BASE_SPEC_LINK}/patient.html#search"
503
+ validates resource: "Patient", methods: ["search"]
504
+ }
505
+ skip unless @patient_id
506
+
507
+ # next, we're going execute a series of searches for conditions referencing the patient
508
+ options = {
509
+ :search => {
510
+ :flag => flag,
511
+ :compartment => nil,
512
+ :parameters => {
513
+ '_revinclude' => 'Condition:patient',
514
+ '_id' => @patient_id
515
+ }
516
+ }
517
+ }
518
+ reply = @client.search(FHIR::Patient, options)
519
+ assert_response_ok(reply)
520
+ assert_bundle_response(reply)
521
+ assert reply.resource.total > 0, 'The server should have Patients that are _revinclude=Condition:patient.'
522
+ has_condition = false
523
+ reply.resource.entry.each do |entry|
524
+ has_condition = true if (entry.resource && entry.resource.class == FHIR::Condition)
525
+ end
526
+ assert(has_condition,'The server did not include the Condition referencing the Patient.', reply.body)
527
+ end
528
+
514
529
  test "SE21#{action[0]}", 'Search for quantity (in observation) - precision tests' do
515
530
  metadata {
516
531
  links "#{REST_SPEC_LINK}#search"
@@ -518,31 +533,33 @@ module Crucible
518
533
  links "#{BASE_SPEC_LINK}/observation.html#search"
519
534
  validates resource: "Observation", methods: ["search"]
520
535
  }
521
- skip unless (@obs_a && @obs_b && @obs_c)
536
+ skip unless (@obs_a && @obs_b && @obs_c && @obs_d)
522
537
 
523
538
  options = {
524
539
  :search => {
525
540
  :flag => flag,
526
541
  :compartment => nil,
527
542
  :parameters => {
528
- 'value-quantity' => '4.1234||mmol'
543
+ 'value-quantity' => '2.0||mmol'
529
544
  }
530
545
  }
531
546
  }
532
547
  reply = @client.search(FHIR::Observation, options)
533
- has_obs_a = has_obs_b = has_obs_c = false
548
+ has_obs_a = has_obs_b = has_obs_c = has_obs_d = false
534
549
  while reply != nil
535
550
  assert_response_ok(reply)
536
551
  assert_bundle_response(reply)
537
552
  has_obs_a = true if reply.resource.get_by_id(@obs_a)
538
553
  has_obs_b = true if reply.resource.get_by_id(@obs_b)
539
554
  has_obs_c = true if reply.resource.get_by_id(@obs_c)
555
+ has_obs_d = true if reply.resource.get_by_id(@obs_d)
540
556
  reply = @client.next_page(reply)
541
557
  end
542
558
 
543
- assert has_obs_a, 'Search on quantity value 4.1234 should return 4.12345'
544
- assert !has_obs_b, 'Search on quantity value 4.1234 should not return 4.12346'
545
- assert !has_obs_c, 'Search on quantity value 4.1234 should not return 4.12349'
559
+ assert has_obs_a, 'Search on quantity value 2.0 should return 2.0'
560
+ assert has_obs_b, 'Search on quantity value 2.0 should return 1.96'
561
+ assert has_obs_c, 'Search on quantity value 2.0 should return 2.04'
562
+ assert !has_obs_d, 'Search on quantity value 2.0 should not return 1.80'
546
563
  end
547
564
 
548
565
  test "SE22#{action[0]}", 'Search for quantity (in observation) - operators' do
@@ -552,7 +569,7 @@ module Crucible
552
569
  links "#{BASE_SPEC_LINK}/observation.html#search"
553
570
  validates resource: "Observation", methods: ["search"]
554
571
  }
555
- skip unless (@obs_a && @obs_d && @obs_e)
572
+ skip unless (@obs_a && @obs_e && @obs_f)
556
573
 
557
574
  options = {
558
575
  :search => {
@@ -564,19 +581,22 @@ module Crucible
564
581
  }
565
582
  }
566
583
  reply = @client.search(FHIR::Observation, options)
567
- has_obs_a = has_obs_b = has_obs_c = false
584
+ has_obs_e = has_obs_f = false
568
585
  while reply != nil
569
586
  assert_response_ok(reply)
570
587
  assert_bundle_response(reply)
571
- has_obs_a = true if reply.resource.get_by_id(@obs_a)
572
- has_obs_d = true if reply.resource.get_by_id(@obs_d)
588
+ reply.resource.entry.each do |e|
589
+ value = e.resource.value.try(:value)
590
+ assert(value, "Search did not return a value.")
591
+ assert((value > 5), "Search should not return values less than or equal to 5.")
592
+ end
573
593
  has_obs_e = true if reply.resource.get_by_id(@obs_e)
594
+ has_obs_f = true if reply.resource.get_by_id(@obs_f)
574
595
  reply = @client.next_page(reply)
575
596
  end
576
597
 
577
- assert !has_obs_a, 'Search greater than quantity should not return lesser value.'
578
- assert has_obs_d, 'Search greater than quantity should return greater value.'
579
598
  assert has_obs_e, 'Search greater than quantity should return greater value.'
599
+ assert has_obs_f, 'Search greater than quantity should return greater value.'
580
600
  end
581
601
 
582
602
  test "SE23#{action[0]}", 'Search with quantifier :missing, on Patient.gender' do
@@ -606,7 +626,7 @@ module Crucible
606
626
  reply = @client.search(FHIR::Patient, options)
607
627
  assert_response_ok(reply)
608
628
  assert_bundle_response(reply)
609
- assert_equal expected, reply.resource.total, 'The server did not report the correct number of results.'
629
+ assert_equal expected, reply.resource.total, 'The server did not report the expected number of results.'
610
630
  end
611
631
 
612
632
  test "SE24#{action[0]}", 'Search with non-existing parameter' do