plan_executor 1.0.2 → 1.8.0

data/lib/tests/suites/connectathon_lab_order_track.rb

@@ -7,11 +7,12 @@ module Crucible
       end
 
       def description
-        'Connectathon Lab Order Track focuses on DiagnosticOrder, Order, Observation and Specimen.'
+        'Connectathon Lab Order Track focuses on DiagnosticRequest, Order, Observation and Specimen.'
       end
 
       def initialize(client1, client2=nil)
         super(client1, client2)
+        # @tags.append('connectathon')
         @category = {id: 'connectathon', title: 'Connectathon'}
       end
 
@@ -25,6 +26,10 @@ module Crucible
         performer = @resources.load_fixture('practitioner/pract-uslab-example3.xml')
         organization = @resources.load_fixture('organization/org-uslab-example3.xml')
 
+        specimen_100 = @resources.load_fixture('specimen/spec-100.xml')
+        specimen_400 = @resources.load_fixture('specimen/spec-400.xml')
+        specimen_uslab = @resources.load_fixture('specimen/spec-400.xml')
+
         # Create our reference patient
         create_object(patient, :patient)
 
@@ -36,83 +41,101 @@ module Crucible
 
         # Create the Organization all of these belong to
         create_object(organization, :organization)
+
+        specimen_100.subject = @records[:patient].to_reference
+        create_object(specimen_100, :spec_100)
+
+        specimen_400.subject = @records[:patient].to_reference
+        create_object(specimen_400, :spec_400)
+
+        specimen_uslab.subject = @records[:patient].to_reference
+        create_object(specimen_uslab, :spec_uslab)
       end
 
       def teardown
-        @records.each_value do |value|
-          @client.destroy(value.class, value.xmlId)
+        resourceType = ['DiagnosticReport','DiagnosticRequest','Observation','Specimen','Practitioner','Patient','Organization']
+        resourceType.each do |type|
+          @records.each_value do |value|
+            @client.destroy(value.class, value.id) if value.resourceType==type
+          end
         end
       end
 
-      test 'C12T11_1', 'Create a DiagnosticOrder' do
+      test 'C12T11_1', 'Create a DiagnosticRequest' do
         metadata {
           links "#{REST_SPEC_LINK}#create"
           links "http://wiki.hl7.org/index.php?title=201605_LabOrder#Step_1_Order_a_new_lab_test"
           requires resource: 'Patient', methods: ['create', 'delete']
           requires resource: 'Practitioner', methods: ['create', 'delete']
-          requires resource: 'DiagnosticOrder', methods: ['create']
-          validates resource: 'DiagnosticOrder', methods: ['create']
+          requires resource: 'DiagnosticRequest', methods: ['create']
+          validates resource: 'DiagnosticRequest', methods: ['create']
         }
-        create_diagnostic_order('diagnostic_order/do-100.xml', :diag_order_1)
-        create_diagnostic_order('diagnostic_order/do-200.xml', :diag_order_2)
-        create_diagnostic_order('diagnostic_order/do-300.xml', :diag_order_3)
-        create_diagnostic_order('diagnostic_order/do-400.xml', :diag_order_4)
-
+        create_diagnostic_request('diagnostic_request/do-100.xml', :diag_order_1)
+        create_diagnostic_request('diagnostic_request/do-200.xml', :diag_order_2, :spec_uslab)
+        create_diagnostic_request('diagnostic_request/do-300.xml', :diag_order_3, :spec_uslab)
+        create_diagnostic_request('diagnostic_request/do-400.xml', :diag_order_4, :spec_400)
       end
 
-      test 'C12T11_2', 'Create an Order referencing the DiagnosticOrder' do
-        metadata {
-          links "#{REST_SPEC_LINK}#create"
-          links "http://wiki.hl7.org/index.php?title=201605_LabOrder#Step_1_Order_a_new_lab_test"
-          requires resource: 'Patient', methods: ['read']
-          requires resource: 'Practitioner', methods: ['read']
-          requires resource: 'DiagnosticOrder', methods: ['read']
-          requires resource: 'Order', methods: ['create']
-          validates resource: 'Order', methods: ['create']
-        }
-        create_order('order/order-100.xml', :order_1)
-        create_order('order/order-200.xml', :order_2)
-        create_order('order/order-300.xml', :order_3)
-        create_order('order/order-400.xml', :order_4)
-      end
-
-      test 'C12T11_3', 'Create an OrderResponse referencing the Order' do
-        metadata {
-          links "#{REST_SPEC_LINK}#create"
-          links 'http://wiki.hl7.org/index.php?title=201605_LabOrder#Step_2_Accept_new_lab_orders'
-          requires resource: 'Patient', methods: ['read']
-          requires resource: 'Practitioner', methods: ['read']
-          requires resource: 'DiagnosticOrder', methods: ['read']
-          requires resource: 'Order', methods: ['read']
-          requires resource: 'OrderResponse', methods: ['create']
-          validates resource: 'OrderResponse', methods: ['create']
-        }
-
-        create_order_response('order_response/ordresp-100.xml', :order_response_1, @records[:order_1])
-        create_order_response('order_response/ordresp-200.xml', :order_response_2, @records[:order_2])
-        create_order_response('order_response/ordresp-300.xml', :order_response_3, @records[:order_3])
-        create_order_response('order_response/ordresp-400.xml', :order_response_4, @records[:order_4])
-      end
+      # The `Order` resource disappeared in STU3
+      # test 'C12T11_2', 'Create an Order referencing the DiagnosticRequest' do
+      #   metadata {
+      #     links "#{REST_SPEC_LINK}#create"
+      #     links "http://wiki.hl7.org/index.php?title=201605_LabOrder#Step_1_Order_a_new_lab_test"
+      #     requires resource: 'Patient', methods: ['read']
+      #     requires resource: 'Practitioner', methods: ['read']
+      #     requires resource: 'DiagnosticRequest', methods: ['read']
+      #     requires resource: 'Order', methods: ['create', 'delete']
+      #     validates resource: 'Order', methods: ['create', 'delete']
+      #   }
+      #   create_order('order/order-100.xml', :order_1, :diag_order_1)
+      #   create_order('order/order-200.xml', :order_2, :diag_order_2)
+      #   create_order('order/order-300.xml', :order_3, :diag_order_3)
+      #   create_order('order/order-400.xml', :order_4, :diag_order_4)
+      # end
+
+      # The `OrderResponse` resource disappeared in STU3
+      # test 'C12T11_3', 'Create an OrderResponse referencing the Order' do
+      #   metadata {
+      #     links "#{REST_SPEC_LINK}#create"
+      #     links 'http://wiki.hl7.org/index.php?title=201605_LabOrder#Step_2_Accept_new_lab_orders'
+      #     requires resource: 'Patient', methods: ['read']
+      #     requires resource: 'Practitioner', methods: ['read']
+      #     requires resource: 'DiagnosticRequest', methods: ['read']
+      #     requires resource: 'Order', methods: ['read']
+      #     requires resource: 'OrderResponse', methods: ['create']
+      #     validates resource: 'OrderResponse', methods: ['create']
+      #   }
+
+      #   create_order_response('order_response/ordresp-100.xml', :order_response_1, @records[:order_1])
+      #   create_order_response('order_response/ordresp-200.xml', :order_response_2, @records[:order_2])
+      #   create_order_response('order_response/ordresp-300.xml', :order_response_3, @records[:order_3])
+      #   create_order_response('order_response/ordresp-400.xml', :order_response_4, @records[:order_4])
+      # end
 
       test 'C12T11_4', 'Submit DiagnosticReport, Specimen and Observation resources' do
         metadata {
           links "#{REST_SPEC_LINK}#create"
           links "#{REST_SPEC_LINK}#read"
           links 'http://wiki.hl7.org/index.php?title=201605_LabOrder#Step_3_Fulfill_Lab_Order'
-          requires resource: 'DiagnosticOrder', methods: ['read']
+          requires resource: 'DiagnosticRequest', methods: ['read']
           requires resource: 'DiagnosticReport', methods: ['create']
           requires resource: 'Observation', methods: ['create']
-          requires resource: 'Specimen', methods: ['create']
+          requires resource: 'Specimen', methods: ['read']
           validates resource: 'OrderResponse', methods: ['create']
           validates resource: 'Observation', methods: ['create']
           validates resource: 'DiagnosticReport', methods: ['create']
         }
 
-        create_diagnostic_report('specimen/spec-100.xml', ['observation/obs-100.xml', 'observation/obs-101.xml'], 'diagnostic_report/dr-100.xml', :diag_report_1, @records[:diag_order_1])
-        create_diagnostic_report('specimen/spec-uslab-example1.xml', ['observation/obs-200.xml'], 'diagnostic_report/dr-200.xml', :diag_report_2, @records[:diag_order_2])
-        create_diagnostic_report('specimen/spec-uslab-example1.xml', ['observation/obs-300.xml', 'observation/obs-301.xml', 'observation/obs-302.xml', 'observation/obs-303.xml', 'observation/obs-304.xml'], 'diagnostic_report/dr-300.xml', :diag_report_3, @records[:diag_order_3])
-        create_diagnostic_report('specimen/spec-400.xml', ['observation/obs-400.xml', 'observation/obs-401.xml', 'observation/obs-402.xml', 'observation/obs-403.xml', 'observation/obs-404.xml', 'observation/obs-405.xml', 'observation/obs-406.xml', 'observation/obs-407.xml', 'observation/obs-408.xml'], 'diagnostic_report/dr-400.xml', :diag_report_4, @records[:diag_order_4])
+        # Skips if diagnostic reports do not exist
+        skip if @records[:diag_order_1].nil?
+        skip if @records[:diag_order_2].nil?
+        skip if @records[:diag_order_3].nil?
+        skip if @records[:diag_order_4].nil?
 
+        create_diagnostic_report(:spec_100, ['observation/obs-100.xml', 'observation/obs-101.xml'], 'diagnostic_report/dr-100.xml', :diag_report_1, @records[:diag_order_1])
+        create_diagnostic_report(:spec_uslab, ['observation/obs-200.xml'], 'diagnostic_report/dr-200.xml', :diag_report_2, @records[:diag_order_2])
+        create_diagnostic_report(:spec_uslab, ['observation/obs-300.xml', 'observation/obs-301.xml', 'observation/obs-302.xml', 'observation/obs-303.xml', 'observation/obs-304.xml'], 'diagnostic_report/dr-300.xml', :diag_report_3, @records[:diag_order_3])
+        create_diagnostic_report(:spec_400, ['observation/obs-400.xml', 'observation/obs-401.xml', 'observation/obs-402.xml', 'observation/obs-403.xml', 'observation/obs-404.xml', 'observation/obs-405.xml', 'observation/obs-406.xml', 'observation/obs-407.xml', 'observation/obs-408.xml'], 'diagnostic_report/dr-400.xml', :diag_report_4, @records[:diag_order_4])
       end
 
       test 'C12T11_5', 'Retrieve DiagnosticReport' do
@@ -129,106 +152,110 @@ module Crucible
         get_diagnostic_report(:diag_report_4)
       end
 
-      test 'C12T11_6', 'Update DiagnosticOrder' do
+      test 'C12T11_6', 'Update DiagnosticRequest' do
         metadata {
           links "#{REST_SPEC_LINK}#read"
           links "#{REST_SPEC_LINK}#update"
           links 'http://wiki.hl7.org/index.php?title=201605_LabOrder#Step_4_Receive_Lab_Results'
-          requires resource: 'DiagnosticOrder', methods: ['read', 'update']
-          validates resource: 'DiagnosticOrder', methods: ['read', 'update']
+          requires resource: 'DiagnosticRequest', methods: ['read', 'update']
+          validates resource: 'DiagnosticRequest', methods: ['read', 'update']
         }
-        update_diagnostic_order(:diag_order_1)
-        update_diagnostic_order(:diag_order_2)
-        update_diagnostic_order(:diag_order_3)
-        update_diagnostic_order(:diag_order_4)
+        update_diagnostic_request(:diag_order_1)
+        update_diagnostic_request(:diag_order_2)
+        update_diagnostic_request(:diag_order_3)
+        update_diagnostic_request(:diag_order_4)
       end
 
       private
 
-      def create_order(fixture_path, order_name)
-        order = @resources.load_fixture(fixture_path)
-        order.date = DateTime.now.iso8601
-        order.subject.reference = @records[:patient]
-        order.source.reference = @records[:provider]
+      # The `Order` resource disappeared in STU3
+      # def create_order(fixture_path, order_name, diag_order_name)
+      #   order = @resources.load_fixture(fixture_path)
+      #   order.date = DateTime.now.iso8601
+      #   order.subject = @records[:patient].to_reference
+      #   order.source = @records[:provider].to_reference
+      #   order.detail = @records[diag_order_name].to_reference
 
-        create_object(order, order_name)
-      end
+      #   create_object(order, order_name)
+      # end
 
-      def create_diagnostic_order(fixture_path, order_name)
+      def create_diagnostic_request(fixture_path, order_name, specimen_name = nil)
         diag_order = @resources.load_fixture(fixture_path)
-        diag_order.subject.reference = @records[:patient]
-        diag_order.orderer.reference = @records[:provider]
+        diag_order.subject = @records[:patient].to_reference
+        diag_order.requester = @records[:provider].to_reference
+        diag_order.supportingInformation = [@records[specimen_name].to_reference] if specimen_name
 
         create_object(diag_order, order_name)
       end
 
-      def create_order_response(fixture_path, response_name, reference_order)
-        order_response = @resources.load_fixture(fixture_path)
-        order_response.date = DateTime.now.iso8601
-        order_response.request.reference = reference_order
-        order_response.who.reference = @records[:organization]
+      # The `OrderResponse` resource disappeared in STU3
+      # def create_order_response(fixture_path, response_name, reference_order)
+      #   order_response = @resources.load_fixture(fixture_path)
+      #   order_response.date = DateTime.now.iso8601
+      #   order_response.request = reference_order.to_reference
+      #   order_response.who = @records[:organization].to_reference
 
-        create_object(order_response, response_name)
-      end
-
-      def create_diagnostic_report(specimen_fixture_path, observation_fixture_paths, diagnostic_report_fixture_path, dr_name, diag_order)
-        specimen = @resources.load_fixture(specimen_fixture_path)
-        specimen.subject.reference = @records[:patient]
-        create_object(specimen, "#{dr_name}_specimen".to_sym)
+      #   create_object(order_response, response_name)
+      # end
 
+      def create_diagnostic_report(specimen_name, observation_fixture_paths, diagnostic_report_fixture_path, dr_name, diag_order)
         diag_report = @resources.load_fixture(diagnostic_report_fixture_path)
-        diag_report.subject.reference = @records[:patient]
+        diag_report.subject = @records[:patient].to_reference
         diag_report.issued = DateTime.now.iso8601
         diag_report.effectiveDateTime = DateTime.now.iso8601
-        diag_report.performer.reference = @records[:performer]
-        diag_report.request << FHIR::Reference.new(reference: diag_order)
-        diag_report.specimen << FHIR::Reference.new(reference: specimen)
+        diag_report.performer = @records[:performer].to_reference
+        diag_report.request = [diag_order.to_reference]
+        diag_report.specimen = [@records[specimen_name].to_reference]
+        diag_report.result = []
 
         observation_fixture_paths.each_with_index do |obs, index|
           observation = @resources.load_fixture(obs)
-          observation.specimen.reference = specimen
-          observation.subject.reference = @records[:patient]
-          observation_name = "#{dr_name}_observation_{index}".to_sym
+          observation.specimen = @records[specimen_name].to_reference
+          observation.subject = @records[:patient].to_reference
+          observation.performer = @records[:performer].to_reference
+          observation_name = "#{dr_name}_observation_#{index}".to_sym
           create_object(observation, observation_name)
-          diag_report.result << FHIR::Reference.new(reference: observation)
+          diag_report.result << @records[observation_name].to_reference
         end
 
         create_object(diag_report, dr_name)
       end
 
       def get_diagnostic_report(dr_name)
-        reply = @client.read FHIR::DiagnosticReport, @records[dr_name].xmlId
+
+        assert @records[dr_name], "No DiagnosticReport with that name present"
+        reply = @client.read FHIR::DiagnosticReport, @records[dr_name].id
         assert_response_ok(reply)
 
-        assert reply.resource.equals?(@records[dr_name], ['_id', 'text', 'meta', 'presentedForm']), "Diagnostic Report #{dr_name.to_s} doesn't match retrieved Diagnostic Report"
+        assert reply.resource.equals?(@records[dr_name], ['text', 'meta', 'presentedForm', 'extension']), "DiagnosticReport/#{@records[dr_name].id} doesn't match retrieved DiagnosticReport. Mismatched fields: #{reply.resource.mismatch(@records[dr_name], ['text', 'meta', 'presentedForm', 'extension'])}"
       end
 
-      def update_diagnostic_order(order_name)
-        reply = @client.read FHIR::DiagnosticOrder, @records[order_name].xmlId
+      def update_diagnostic_request(order_name)
+        assert @records[order_name], "No DiagnosticRequest with that name present"
+        
+        reply = @client.read FHIR::DiagnosticRequest, @records[order_name].id
+        
         assert_response_ok(reply)
-
-        assert reply.resource.equals? @records[order_name], ['_id', 'text', 'meta']
-
-        assert reply.resource.status == 'requested'
+        assert reply.resource.equals?(@records[order_name], ['text', 'meta', 'presentedForm', 'extension']), "Reply did not match DiagnosticRequest/#{@records[order_name].id}. Mismatched fields: #{reply.resource.mismatch(@records[order_name], ['text', 'meta', 'presentedForm', 'extension'])}"
+        assert reply.resource.status == 'active', 'DiagnosticRequest status should be active.'
 
         @records[order_name].status = 'completed'
-
-        reply = @client.update @records[order_name], @records[order_name].xmlId
+        reply = @client.update @records[order_name], @records[order_name].id
+        
         assert_response_ok(reply)
 
-        reply = @client.read FHIR::DiagnosticOrder, @records[order_name].xmlId
+        reply = @client.read FHIR::DiagnosticRequest, @records[order_name].id
+        
         assert_response_ok(reply)
-
-        assert reply.resource.equals? @records[order_name], ['_id', 'text', 'meta']
-
-        assert reply.resource.status == 'completed'
-
+        assert reply.resource.equals?(@records[order_name], ['text', 'meta', 'presentedForm', 'extension']), "Reply did not match #{@records[order_name]}. Mismatched fields: #{reply.resource.mismatch(@records[order_name], ['text', 'meta', 'presentedForm', 'extension'])}"
+        assert reply.resource.status == 'completed', 'DiagnosticRequest status should have updated to completed.'
       end
 
       def create_object(obj, obj_sym)
+        obj.id = nil
         reply = @client.create obj
         assert_response_ok(reply)
-        obj.xmlId = reply.id
+        obj.id = reply.id
         @records[obj_sym] = obj
 
         warning { assert_valid_resource_content_type_present(reply) }

data/lib/tests/suites/connectathon_patch_track.rb

@@ -0,0 +1,125 @@
+module Crucible
+  module Tests
+    class ConnectathonPatchTrackTest < BaseSuite
+
+      def id
+        'ConnectathonPatchTrackTest'
+      end
+
+      def description
+        'Connectathon PATCH Test.'
+      end
+
+      def initialize(client1, client2=nil)
+        super(client1, client2)
+        @tags.append('connectathon')
+        @category = {id: 'connectathon', title: 'Connectathon'}
+      end
+
+      def setup
+        @medication_order = Crucible::Generator::Resources.new.medicationorder_simple
+        @medication_order.id = nil # clear the identifier, in case the server checks for duplicates
+        @medication_order.identifier = nil # clear the identifier, in case the server checks for duplicates
+
+        reply = @client.create(@medication_order)
+
+        assert_response_ok(reply)
+        @medication_order_id = reply.id
+      end
+
+      def teardown
+        @client.destroy(FHIR::MedicationRequest, @medication_order_id) unless @medication_order_id.nil?
+      end
+
+      ['JSON','XML'].each do |fmt|
+
+        #
+        # Get the MedicationRequest that was just created.
+        #
+        test "C12PATCH_1_(#{fmt})","Get Existing MedicationRequest by #{fmt}" do
+          metadata {
+            links "#{REST_SPEC_LINK}#read"
+            links "#{BASE_SPEC_LINK}/medicationorder.html"
+            links 'http://wiki.hl7.org/index.php?title=201605_PATCH_Connectathon_Track_Proposal'
+            requires resource: 'MedicationRequest', methods: ['read']
+            validates resource: 'MedicationRequest', methods: ['read']
+          }
+          
+          reply = @client.read(FHIR::MedicationRequest, @medication_order_id, resource_format(fmt))
+          assert_response_ok(reply)
+          assert_resource_type(reply, FHIR::MedicationRequest)
+          assert_resource_content_type(reply, fmt.downcase)
+          warning { 
+            assert(!reply.resource.meta.nil?, 'Last Updated and VersionId not present.')
+            assert(!reply.resource.meta.versionId.nil?, 'VersionId not present.')
+            @previous_version_id = reply.resource.meta.versionId
+            assert(!reply.resource.meta.lastUpdated.nil?, 'Last Updated not present.')
+          }
+        end
+
+
+        #
+        # Patch the MedicationRequest.
+        #
+        test "C12PATCH_2_(#{fmt})","#{fmt} Patch Existing MedicationRequest" do
+          metadata {
+            links "#{REST_SPEC_LINK}#patch"
+            links 'http://wiki.hl7.org/index.php?title=201605_PATCH_Connectathon_Track_Proposal'
+            requires resource: 'MedicationRequest', methods: ['read']
+            validates resource: 'MedicationRequest', methods: ['read']
+          }
+
+          patchset = [{ op: "replace", path: "MedicationRequest/status", value: "completed" }]
+          reply = @client.partial_update(FHIR::MedicationRequest, @medication_order_id, patchset, {}, resource_format(fmt))
+
+          assert_response_ok(reply)
+          warning { 
+            assert_resource_type(reply, FHIR::MedicationRequest)
+            assert_resource_content_type(reply, fmt.downcase)
+          }
+          reply = @client.read(FHIR::MedicationRequest, @medication_order_id, resource_format(fmt))
+          assert_response_ok(reply)
+          assert_equal(reply.resource.status, 'completed', 'Status not updated from patch.')
+          warning {
+            assert(reply.resource.meta.versionId != @previous_version_id, 'VersionId not updated after patch.') unless @previous_version_id.nil?
+          }
+        end
+
+        #
+        # Attempt to PATCH the MedicationRequest with an old Version Id.
+        #
+        test "C12PATCH_3_(#{fmt})","#{fmt} Patching Medication Order with old Version Id should result in error" do
+          metadata {
+            links "#{REST_SPEC_LINK}#patch"
+            links 'http://wiki.hl7.org/index.php?title=201605_PATCH_Connectathon_Track_Proposal'
+            requires resource: 'MedicationRequest', methods: ['read']
+            validates resource: 'MedicationRequest', methods: ['read']
+          }
+
+          skip if @previous_version_id.nil?
+
+          patchset = [{ op: "replace", path: "MedicationRequest/status", value: "active" }]
+
+          # http://hl7.org/fhir/2016Sep/http.html#2.42.0.2
+          # According to the FHIR spec, the If-Match eTag for version id should be weak.
+          options = { 'If-Match' => "W/\"#{@previous_version_id}\"" }
+
+          reply = @client.partial_update(FHIR::MedicationRequest, @medication_order_id, patchset, options, resource_format(fmt))
+
+          assert_response_conflict(reply)
+
+          reply = @client.read(FHIR::MedicationRequest, @medication_order_id, resource_format(fmt))
+          assert_response_ok(reply)
+          assert_equal(reply.resource.status, 'completed', 'Resource should not have been patched because version id was stale.')
+
+        end
+
+      end
+
+      def resource_format(f)
+        "FHIR::Formats::ResourceFormat::RESOURCE_#{f}".constantize
+      end
+
+    end
+  end
+end