plan_executor 1.0.2 → 1.8.0

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Files changed (420) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +1 -0
  3. data/.travis.yml +3 -2
  4. data/Gemfile +3 -6
  5. data/Gemfile.lock +52 -48
  6. data/README.md +2 -2
  7. data/fixtures/attachment/ccda_pdf.pdf +0 -0
  8. data/fixtures/attachment/ccda_pdf_base64.txt +2489 -0
  9. data/fixtures/attachment/ccda_structured.xml +1976 -0
  10. data/fixtures/attachment/ccda_unstructured.xml +2563 -0
  11. data/fixtures/daf/conformance-daf-query-responder.xml +2024 -193
  12. data/fixtures/diagnostic_report/diagnosticreport-familyhistory-create.xml +67 -0
  13. data/fixtures/diagnostic_report/diagnosticreport-hlatyping-create.xml +64 -0
  14. data/fixtures/diagnostic_report/diagnosticreport-pathologyreport-create.xml +312 -0
  15. data/fixtures/diagnostic_report/dr-100.xml +3 -3
  16. data/fixtures/diagnostic_report/dr-200.xml +5 -5
  17. data/fixtures/diagnostic_report/dr-300.xml +3 -3
  18. data/fixtures/diagnostic_report/dr-400.xml +3 -3
  19. data/fixtures/{diagnostic_order → diagnostic_request}/do-100.xml +57 -64
  20. data/fixtures/diagnostic_request/do-200.xml +73 -0
  21. data/fixtures/{diagnostic_order → diagnostic_request}/do-300.xml +73 -91
  22. data/{lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder → fixtures/diagnostic_request}/do-400.xml +74 -88
  23. data/fixtures/family_member_history/familymemberhistory-familyhistory-create.xml +27 -0
  24. data/fixtures/financial/claim-example-oral-average.xml +199 -0
  25. data/fixtures/financial/claim-example-oral-orthoplan.xml +298 -0
  26. data/fixtures/financial/claim-example.xml +98 -0
  27. data/fixtures/financial/eligibilityrequest-example.xml +40 -0
  28. data/fixtures/observation/obs-401.xml +7 -17
  29. data/fixtures/observation/obs-402.xml +7 -17
  30. data/fixtures/observation/obs-403.xml +4 -29
  31. data/fixtures/observation/obs-407.xml +4 -11
  32. data/fixtures/observation/observation-datawarehouse-create.xml +72 -0
  33. data/fixtures/observation/observation-familyhistory-create.xml +61 -0
  34. data/fixtures/observation/observation-germline-create.xml +72 -0
  35. data/fixtures/observation/observation-register-create.xml +72 -0
  36. data/fixtures/patch/medicationrequest-simple.xml +16 -0
  37. data/fixtures/patient/patient-example-updated.xml +1 -7
  38. data/fixtures/patient/patient-example-us-extensions.xml +119 -0
  39. data/fixtures/patient/patient-example.xml +46 -27
  40. data/fixtures/patient/patient-familyhistory-create.xml +45 -0
  41. data/fixtures/patient/patient-register-create.xml +47 -0
  42. data/fixtures/practitioner/practitioner-register-create.xml +32 -0
  43. data/fixtures/record/condition-example-f201-fever.xml +54 -49
  44. data/fixtures/record/condition-example-f205-infection.xml +16 -15
  45. data/fixtures/record/diagnosticreport-example-f201-brainct.xml +45 -18
  46. data/fixtures/record/encounter-example-f201-20130404.xml +42 -15
  47. data/fixtures/record/encounter-example-f202-20130128.xml +57 -15
  48. data/fixtures/record/observation-example-f202-temperature.xml +85 -60
  49. data/fixtures/record/organization-example-f201-aumc.xml +87 -4
  50. data/fixtures/record/organization-example-f203-bumc.xml +53 -4
  51. data/fixtures/record/patient-example-f201-roel.xml +108 -8
  52. data/fixtures/record/practitioner-example-f201-ab.xml +73 -14
  53. data/fixtures/record/procedure-example-f201-tpf.xml +39 -9
  54. data/fixtures/scheduling/slot-simple.xml +1 -1
  55. data/fixtures/sequence/sequence-register-create.xml +31 -0
  56. data/fixtures/specimen/spec-100.xml +8 -8
  57. data/fixtures/specimen/spec-400.xml +11 -11
  58. data/fixtures/specimen/spec-uslab-example1.xml +11 -11
  59. data/fixtures/specimen/specimen-familyhistory-create.xml +54 -0
  60. data/fixtures/specimen/specimen-register-create.xml +49 -0
  61. data/fixtures/terminology/codesystem-data-types.json +230 -0
  62. data/fixtures/terminology/codesystem-resource-types.json +482 -0
  63. data/fixtures/terminology/codesystem-simple.xml +129 -0
  64. data/fixtures/terminology/conceptmap-example.xml +141 -0
  65. data/fixtures/terminology/v2-codesystem.json +1297 -0
  66. data/fixtures/terminology/v2-valueset.json +16 -0
  67. data/fixtures/terminology/valueset-defined-types.json +25 -0
  68. data/fixtures/terminology/valueset-example.xml +111 -0
  69. data/fixtures/validation/observation.profile.xml +1534 -253
  70. data/fixtures/validation/observations/observation-example.xml +66 -0
  71. data/lib/FHIR_structure.json +129 -82
  72. data/lib/daf_resource_generator.rb +7 -7
  73. data/lib/data/resources.rb +50 -30
  74. data/lib/ext/client.rb +2 -2
  75. data/lib/plan_executor.rb +6 -1
  76. data/lib/resource_generator.rb +413 -212
  77. data/lib/tasks/tasks.rake +151 -20
  78. data/lib/tests/assertions.rb +24 -18
  79. data/lib/tests/base_test.rb +17 -3
  80. data/lib/tests/suites/argonaut_provider_connectathon_test.rb +234 -0
  81. data/lib/tests/suites/base_suite.rb +7 -3
  82. data/lib/tests/suites/connectathon_attachment_track_test.rb +124 -0
  83. data/lib/tests/suites/connectathon_audit_track.rb +113 -69
  84. data/lib/tests/suites/connectathon_care_plan_track.rb +237 -0
  85. data/lib/tests/suites/connectathon_fetch_patient_record.rb +40 -39
  86. data/lib/tests/suites/connectathon_financial_track.rb +231 -23
  87. data/lib/tests/suites/connectathon_genomics_track_test.rb +255 -0
  88. data/lib/tests/suites/connectathon_lab_order_track.rb +131 -104
  89. data/lib/tests/suites/connectathon_patch_track.rb +125 -0
  90. data/lib/tests/suites/connectathon_patient_track.rb +75 -68
  91. data/lib/tests/suites/connectathon_profile_validation.rb +9 -8
  92. data/lib/tests/suites/connectathon_scheduling_track.rb +127 -70
  93. data/lib/tests/suites/connectathon_terminology_track.rb +211 -34
  94. data/lib/tests/suites/daf_profiles_test.rb +112 -72
  95. data/lib/tests/suites/format_test.rb +113 -255
  96. data/lib/tests/suites/history_test.rb +72 -68
  97. data/lib/tests/suites/read_test.rb +31 -27
  98. data/lib/tests/suites/resource_test.rb +283 -85
  99. data/lib/tests/suites/search_test.rb +5 -3
  100. data/lib/tests/suites/search_test_robust.rb +8 -76
  101. data/lib/tests/suites/sprinkler_search_test.rb +104 -84
  102. data/lib/tests/suites/suite_engine.rb +17 -23
  103. data/lib/tests/suites/transaction_test.rb +117 -174
  104. data/lib/tests/testscripts/base_testscript.rb +425 -189
  105. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-base-client-id-json.xml +517 -0
  106. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-base-client-id-xml.xml +517 -0
  107. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-bonus-client-id-json.xml +648 -0
  108. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-bonus-client-id-xml.xml +648 -0
  109. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/README.html +68 -0
  110. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-base-server-id-json.xml +515 -0
  111. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-base-server-id-xml.xml +515 -0
  112. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-bonus-server-id-json.xml +645 -0
  113. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-bonus-server-id-xml.xml +642 -0
  114. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/capabilities/PatientCapabilityStatement.xml +43 -0
  115. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers-min.json +1 -3
  116. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers-min.xml +0 -0
  117. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers.json +5 -10
  118. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers.xml +5 -5
  119. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers-min.json +1 -3
  120. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers-min.xml +0 -0
  121. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers.json +5 -10
  122. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers.xml +4 -5
  123. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-PeterChalmers.json +96 -0
  124. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-PeterChalmers.xml +103 -0
  125. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-bonus-PeterChalmers.json +104 -0
  126. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-bonus-PeterChalmers.xml +108 -0
  127. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers-min.json +1 -3
  128. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers-min.xml +0 -0
  129. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers.json +6 -10
  130. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers.xml +6 -5
  131. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers-min.json +1 -3
  132. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers-min.xml +0 -0
  133. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers.json +7 -11
  134. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers.xml +5 -5
  135. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers-min.json +2 -4
  136. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers-min.xml +1 -1
  137. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers.json +7 -11
  138. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers.xml +8 -7
  139. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/01-RegisterPatient/connectathon-14-patient-fhirclient-01-register-client-id-xml.xml +306 -0
  140. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/01-RegisterPatient/connectathon-14-patient-fhirclient-01-register-server-id-xml.xml +317 -0
  141. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/02-PatientUpdate/connectathon-14-patient-fhirclient-02-update-client-id-xml.xml +346 -0
  142. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/02-PatientUpdate/connectathon-14-patient-fhirclient-02-update-server-id-xml.xml +385 -0
  143. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/capabilities/PatientCapabilityStatement.json +50 -0
  144. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient/_reference/conformance/PatientConformance.xml → scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/capabilities/PatientCapabilityStatement.xml} +10 -2
  145. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-client-id.json +21 -0
  146. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-client-id.xml +15 -0
  147. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-server-id.json +20 -0
  148. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-server-id.xml +14 -0
  149. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-client-id.json +21 -0
  150. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-client-id.xml +15 -0
  151. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-server-id.json +20 -0
  152. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-server-id.xml +14 -0
  153. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-client-id-json.xml +262 -0
  154. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-client-id-xml.xml +262 -0
  155. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-server-id-json.xml +273 -0
  156. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-server-id-xml.xml +273 -0
  157. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-client-id-json.xml +290 -0
  158. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-client-id-xml.xml +290 -0
  159. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-server-id-json.xml +326 -0
  160. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-server-id-xml.xml +326 -0
  161. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-client-id-json.xml +247 -0
  162. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-client-id-xml.xml +247 -0
  163. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-server-id-json.xml +282 -0
  164. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-server-id-xml.xml +281 -0
  165. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-client-id-json.xml +330 -0
  166. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-client-id-xml.xml +330 -0
  167. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-server-id-json.xml +366 -0
  168. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-server-id-xml.xml +366 -0
  169. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-client-id-json.xml +527 -0
  170. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-client-id-xml.xml +527 -0
  171. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-server-id-json.xml +519 -0
  172. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-server-id-xml.xml +519 -0
  173. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-client-id-json.xml +290 -0
  174. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-client-id-xml.xml +290 -0
  175. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-server-id-json.xml +288 -0
  176. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-server-id-xml.xml +288 -0
  177. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-client-id-json.xml +252 -0
  178. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-client-id-xml.xml +252 -0
  179. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-server-id-json.xml +284 -0
  180. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-server-id-xml.xml +284 -0
  181. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-client-id-json.xml +897 -0
  182. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-client-id-xml.xml +897 -0
  183. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-server-id-json.xml +963 -0
  184. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-server-id-xml.xml +963 -0
  185. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/capabilities/PatientCapabilityStatement.json +50 -0
  186. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/capabilities/PatientCapabilityStatement.xml +42 -0
  187. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-client-id.json +86 -0
  188. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-client-id.xml +62 -0
  189. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-server-id.json +85 -0
  190. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-server-id.xml +61 -0
  191. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-client-id.json +86 -0
  192. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-client-id.xml +62 -0
  193. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-server-id.json +86 -0
  194. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-server-id.xml +62 -0
  195. data/lib/tests/testscripts/scripts/spec/_reference/resources/patient-example-update.json +145 -0
  196. data/lib/tests/testscripts/scripts/spec/_reference/resources/patient-example.json +146 -0
  197. data/lib/tests/testscripts/scripts/spec/testscript-example-history.xml +191 -0
  198. data/lib/tests/testscripts/scripts/spec/testscript-example-multisystem.xml +190 -0
  199. data/lib/tests/testscripts/scripts/spec/testscript-example-readtest.xml +178 -0
  200. data/lib/tests/testscripts/scripts/spec/testscript-example-rule.xml +266 -0
  201. data/lib/tests/testscripts/scripts/spec/testscript-example-search.xml +177 -0
  202. data/lib/tests/testscripts/scripts/spec/testscript-example-update.xml +163 -0
  203. data/lib/tests/testscripts/scripts/spec/testscript-example.xml +228 -0
  204. data/lib/tests/testscripts/testscript_engine.rb +36 -22
  205. data/logs/.keep +0 -0
  206. data/plan_executor.gemspec +11 -3
  207. data/test/test_helper.rb +3 -3
  208. data/test/unit/fixtures_test.rb +24 -24
  209. data/test/unit/metadata_test.rb +19 -9
  210. data/test/unit/resource_generator_test.rb +20 -0
  211. metadata +244 -249
  212. data/fixtures/diagnostic_order/do-200.xml +0 -121
  213. data/fixtures/diagnostic_order/do-400.xml +0 -88
  214. data/fixtures/financial/claim-example-average.xml +0 -168
  215. data/fixtures/financial/claim-example-simple.xml +0 -67
  216. data/fixtures/order/order-100.xml +0 -61
  217. data/fixtures/order/order-200.xml +0 -61
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  398. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-400.xml +0 -70
  399. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-uslab-example1.xml +0 -82
  400. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 1 Document.txt +0 -122
  401. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 2 Document.txt +0 -103
  402. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 3 Document.txt +0 -201
  403. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 4 Document.txt +0 -310
  404. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/MedicationStatementCreate.xml +0 -11
  405. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/PatientSearchType.xml +0 -15
  406. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-create.json +0 -39
  407. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-patch.json +0 -3
  408. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json-if-match.xml +0 -321
  409. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json.xml +0 -303
  410. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-peer2peer-patient-json.xml +0 -235
  411. data/test/fixtures/testscript-example.xml +0 -202
  412. data/test/fixtures/testscript-history.xml +0 -143
  413. data/test/fixtures/testscript-readtest.xml +0 -272
  414. data/test/fixtures/testscript-search.xml +0 -282
  415. data/test/fixtures/testscript-update.xml +0 -147
  416. data/test/unit/argonaut_sprint6_test.rb +0 -31
  417. data/test/unit/argonaut_sprint7_test.rb +0 -21
  418. data/test/unit/basic_test.rb +0 -27
  419. data/test/unit/fetch_patient_record_test.rb +0 -357
  420. data/test/unit/financial_test.rb +0 -41
data/lib/tests/testscripts/xml/Connectathon11/Track11-SDC/_reference/resources/questionnaireresponse-expected-ussg-fht-CCDA.xml DELETED
@@ -1,190 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <QuestionnaireResponse xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hl7.org/fhir ../../../../../../build/schema/questionnaireresponse.xsd">
3
- <meta>
4
- <profile value="http://hl7.org/fhir/StructureDefinition/sdc-response"/>
5
- </meta>
6
- <questionnaire>
7
- <reference value="Questionnaire/54127-6"/>
8
- </questionnaire>
9
- <status value="in-progress"/>
10
- <subject>
11
- <reference value="http://hl7.org/fhir/Patient/1"/>
12
- <display value="Eve Everywoman"/>
13
- </subject>
14
- <!--
15
- <author>
16
- <reference value="Device/123"/>
17
- </author>-->
18
- <authored value="2016-01-08"/>
19
- <item>
20
- <linkId value="0"/>
21
- <item>
22
- <linkId value="0.1"/>
23
- <text value="Date Done"/>
24
- </item>
25
- <item>
26
- <linkId value="0.2"/>
27
- <text value="Time Done"/>
28
- </item>
29
- <item>
30
- <linkId value="0.3"/>
31
- <text value="Where Done"/>
32
- </item>
33
- <item>
34
- <linkId value="0.4"/>
35
- <text value="Comment"/>
36
- </item>
37
- </item>
38
- <item>
39
- <linkId value="1"/>
40
- <text value="Your health information"/>
41
- <item>
42
- <linkId value="1.1.1"/>
43
- <text value="Name"/>
44
- <answer>
45
- <valueString value="Eve Everywoman"/>
46
- </answer>
47
- </item>
48
- <item>
49
- <linkId value="1.1.2"/>
50
- <text value="Gender"/>
51
- <answer>
52
- <valueCoding>
53
- <system value="http://loinc.org"/>
54
- <code value="LA3-6"/>
55
- <display value="Female"/>
56
- </valueCoding>
57
- </answer>
58
- </item>
59
- <item>
60
- <linkId value="1.1.3"/>
61
- <text value="Date of Birth"/>
62
- <answer>
63
- <valueDate value="1973-05-31"/>
64
- </answer>
65
- </item>
66
- <item>
67
- <linkId value="1.1.4"/>
68
- <text value="Were you born a twin?"/>
69
- </item>
70
- <item>
71
- <linkId value="1.1.5"/>
72
- <text value="Were you adopted?"/>
73
- </item>
74
- <item>
75
- <linkId value="1.1.6"/>
76
- <text value="Are your parents related to each other in any way other than marriage?"/>
77
- </item>
78
- <item>
79
- <linkId value="1.1.7"/>
80
- <text value="Height"/>
81
- <answer>
82
- <item>
83
- <linkId value="1.1.7.1.1"/>
84
- <text value="Units"/>
85
- </item>
86
- <item>
87
- <linkId value="1.1.7.2.1"/>
88
- <text value="Mock-up item: Shown when Height &gt;= 10"/>
89
- </item>
90
- </answer>
91
- </item>
92
- <item>
93
- <linkId value="1.1.8"/>
94
- <text value="Weight"/>
95
- <answer>
96
- <item>
97
- <linkId value="1.1.8.1.1"/>
98
- <text value="Units"/>
99
- </item>
100
- </answer>
101
- </item>
102
- <item>
103
- <linkId value="1.1.9"/>
104
- <text value="Body mass index (BMI) [Ratio]"/>
105
- </item>
106
- <item>
107
- <linkId value="1.1.10"/>
108
- <text value="Race"/>
109
- </item>
110
- <item>
111
- <linkId value="1.1.11"/>
112
- <text value="Ethnicity"/>
113
- </item>
114
- <item>
115
- <linkId value="1.2"/>
116
- <text value="Your diseases history"/>
117
- <item>
118
- <linkId value="1.2.1"/>
119
- <text value="Disease or Condition"/>
120
- </item>
121
- <item>
122
- <linkId value="1.2.2"/>
123
- <text value="Age at Diagnosis"/>
124
- </item>
125
- </item>
126
- </item>
127
- <item>
128
- <linkId value="2"/>
129
- <text value="Family member health information"/>
130
- <item>
131
- <linkId value="2.1.1"/>
132
- <item>
133
- <linkId value="2.1.1.1"/>
134
- <text value="Relationship to you"/>
135
- </item>
136
- <item>
137
- <linkId value="2.1.1.2"/>
138
- <text value="Name"/>
139
- </item>
140
- <item>
141
- <linkId value="2.1.1.3"/>
142
- <text value="Gender"/>
143
- </item>
144
- <item>
145
- <linkId value="2.1.1.4"/>
146
- <text value="Living?"/>
147
- </item>
148
- <item>
149
- <linkId value="2.1.1.5"/>
150
- <text value="Was this person born a twin?"/>
151
- </item>
152
- <item>
153
- <linkId value="2.1.1.6"/>
154
- <text value="Was this person adopted?"/>
155
- </item>
156
- <item>
157
- <linkId value="2.1.1.7"/>
158
- <text value="Race"/>
159
- </item>
160
- <item>
161
- <linkId value="2.1.1.8"/>
162
- <text value="Ethnicity"/>
163
- </item>
164
- </item>
165
- <item>
166
- <linkId value="2.1.2"/>
167
- <text value="This family member's history of disease"/>
168
- <item>
169
- <linkId value="2.1.2.1"/>
170
- <text value="Disease or Condition"/>
171
- </item>
172
- <item>
173
- <linkId value="2.1.2.2"/>
174
- <text value="Age at Diagnosis"/>
175
- </item>
176
- <item>
177
- <linkId value="2.1.2.3"/>
178
- <text value="Mock-up item: Height"/>
179
- </item>
180
- <item>
181
- <linkId value="2.1.2.4"/>
182
- <text value="Mock-up item: Weight"/>
183
- </item>
184
- <item>
185
- <linkId value="2.1.2.5"/>
186
- <text value="Mock-up item: BMI"/>
187
- </item>
188
- </item>
189
- </item>
190
- </QuestionnaireResponse>
data/lib/tests/testscripts/xml/Connectathon11/Track11-SDC/_reference/resources/questionnaireresponse-expected-ussg-fht-empty.xml DELETED
@@ -1,177 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <QuestionnaireResponse xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hl7.org/fhir ../../../../../../build/schema/questionnaireresponse.xsd">
3
- <meta>
4
- <profile value="http://hl7.org/fhir/StructureDefinition/sdc-response"/>
5
- </meta>
6
- <questionnaire>
7
- <reference value="Questionnaire/54127-6"/>
8
- </questionnaire>
9
- <status value="in-progress"/>
10
- <subject>
11
- <reference value="http://hl7.org/fhir/Patient/1"/>
12
- <display value="Eve Everywoman"/>
13
- </subject>
14
- <!--
15
- <author>
16
- <reference value="Device/123"/>
17
- </author>-->
18
- <authored value="2016-01-08"/>
19
- <item>
20
- <linkId value="0"/>
21
- <item>
22
- <linkId value="0.1"/>
23
- <text value="Date Done"/>
24
- </item>
25
- <item>
26
- <linkId value="0.2"/>
27
- <text value="Time Done"/>
28
- </item>
29
- <item>
30
- <linkId value="0.3"/>
31
- <text value="Where Done"/>
32
- </item>
33
- <item>
34
- <linkId value="0.4"/>
35
- <text value="Comment"/>
36
- </item>
37
- </item>
38
- <item>
39
- <linkId value="1"/>
40
- <text value="Your health information"/>
41
- <item>
42
- <linkId value="1.1.1"/>
43
- <text value="Name"/>
44
- </item>
45
- <item>
46
- <linkId value="1.1.2"/>
47
- <text value="Gender"/>
48
- </item>
49
- <item>
50
- <linkId value="1.1.3"/>
51
- <text value="Date of Birth"/>
52
- </item>
53
- <item>
54
- <linkId value="1.1.4"/>
55
- <text value="Were you born a twin?"/>
56
- </item>
57
- <item>
58
- <linkId value="1.1.5"/>
59
- <text value="Were you adopted?"/>
60
- </item>
61
- <item>
62
- <linkId value="1.1.6"/>
63
- <text value="Are your parents related to each other in any way other than marriage?"/>
64
- </item>
65
- <item>
66
- <linkId value="1.1.7"/>
67
- <text value="Height"/>
68
- <answer>
69
- <item>
70
- <linkId value="1.1.7.1.1"/>
71
- <text value="Units"/>
72
- </item>
73
- <item>
74
- <linkId value="1.1.7.2.1"/>
75
- <text value="Mock-up item: Shown when Height &gt;= 10"/>
76
- </item>
77
- </answer>
78
- </item>
79
- <item>
80
- <linkId value="1.1.8"/>
81
- <text value="Weight"/>
82
- <answer>
83
- <item>
84
- <linkId value="1.1.8.1.1"/>
85
- <text value="Units"/>
86
- </item>
87
- </answer>
88
- </item>
89
- <item>
90
- <linkId value="1.1.9"/>
91
- <text value="Body mass index (BMI) [Ratio]"/>
92
- </item>
93
- <item>
94
- <linkId value="1.1.10"/>
95
- <text value="Race"/>
96
- </item>
97
- <item>
98
- <linkId value="1.1.11"/>
99
- <text value="Ethnicity"/>
100
- </item>
101
- <item>
102
- <linkId value="1.2"/>
103
- <text value="Your diseases history"/>
104
- <item>
105
- <linkId value="1.2.1"/>
106
- <text value="Disease or Condition"/>
107
- </item>
108
- <item>
109
- <linkId value="1.2.2"/>
110
- <text value="Age at Diagnosis"/>
111
- </item>
112
- </item>
113
- </item>
114
- <item>
115
- <linkId value="2"/>
116
- <text value="Family member health information"/>
117
- <item>
118
- <linkId value="2.1.1"/>
119
- <item>
120
- <linkId value="2.1.1.1"/>
121
- <text value="Relationship to you"/>
122
- </item>
123
- <item>
124
- <linkId value="2.1.1.2"/>
125
- <text value="Name"/>
126
- </item>
127
- <item>
128
- <linkId value="2.1.1.3"/>
129
- <text value="Gender"/>
130
- </item>
131
- <item>
132
- <linkId value="2.1.1.4"/>
133
- <text value="Living?"/>
134
- </item>
135
- <item>
136
- <linkId value="2.1.1.5"/>
137
- <text value="Was this person born a twin?"/>
138
- </item>
139
- <item>
140
- <linkId value="2.1.1.6"/>
141
- <text value="Was this person adopted?"/>
142
- </item>
143
- <item>
144
- <linkId value="2.1.1.7"/>
145
- <text value="Race"/>
146
- </item>
147
- <item>
148
- <linkId value="2.1.1.8"/>
149
- <text value="Ethnicity"/>
150
- </item>
151
- </item>
152
- <item>
153
- <linkId value="2.1.2"/>
154
- <text value="This family member's history of disease"/>
155
- <item>
156
- <linkId value="2.1.2.1"/>
157
- <text value="Disease or Condition"/>
158
- </item>
159
- <item>
160
- <linkId value="2.1.2.2"/>
161
- <text value="Age at Diagnosis"/>
162
- </item>
163
- <item>
164
- <linkId value="2.1.2.3"/>
165
- <text value="Mock-up item: Height"/>
166
- </item>
167
- <item>
168
- <linkId value="2.1.2.4"/>
169
- <text value="Mock-up item: Weight"/>
170
- </item>
171
- <item>
172
- <linkId value="2.1.2.5"/>
173
- <text value="Mock-up item: BMI"/>
174
- </item>
175
- </item>
176
- </item>
177
- </QuestionnaireResponse>
data/lib/tests/testscripts/xml/Connectathon11/Track11-SDC/track11-sdc-prepop-xml.xml DELETED
@@ -1,142 +0,0 @@
1
- <TestScript xmlns="http://hl7.org/fhir">
2
- <id value="track11-sdc-prepop-xml"/>
3
- <url value="http://wildfhir.aegis.net/fhir/TestScript/track11-sdc-prepop-xml"/>
4
- <name value="FHIR Connectathon 11 - Track 11 - SDC - Pre-population"/>
5
- <status value="draft"/>
6
- <description value="FHIR Connectathon 11 - Track 11 - SDC - XML Format - Test to pre-populate a QuestionnaireResponse from a CDA document."/>
7
- <fixture id="questionnaire-create-ussg-fht">
8
- <resource>
9
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/questionnaire-sdc-profile-example-ussg-fht.xml"/>
10
- </resource>
11
- </fixture>
12
- <fixture id="binary-create-ussg-ccda2_1-prepop">
13
- <resource>
14
- <reference value="/Connectathon11/Track11-SDC/_reference/C-CDA_R2-1_CCD-ussg.xml"/>
15
- </resource>
16
- </fixture>
17
- <fixture id="parameters-populate-A1-empty-on-instance">
18
- <resource>
19
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/parameters-A1-empty-on-instance.xml"/>
20
- </resource>
21
- </fixture>
22
- <fixture id="parameters-populate-A2-empty-by-ref">
23
- <resource>
24
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/parameters-A2-empty-by-ref.xml"/>
25
- </resource>
26
- </fixture>
27
- <fixture id="parameters-populate-A3-empty-by-identifier">
28
- <resource>
29
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/parameters-A3-empty-by-identifier.xml"/>
30
- </resource>
31
- </fixture>
32
- <fixture id="parameters-populate-A4-empty-by-contained">
33
- <resource>
34
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/parameters-A4-empty-by-contained.xml"/>
35
- </resource>
36
- </fixture>
37
- <fixture id="parameters-populate-B1-CCDA-on-instance">
38
- <resource>
39
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/parameters-B1-CCDA-on-instance.xml"/>
40
- </resource>
41
- </fixture>
42
- <fixture id="parameters-populate-B2-CCDA-by-ref">
43
- <resource>
44
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/parameters-B2-CCDA-by-ref.xml"/>
45
- </resource>
46
- </fixture>
47
- <fixture id="parameters-populate-B3-CCDA-by-identifier">
48
- <resource>
49
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/parameters-B3-CCDA-by-identifier.xml"/>
50
- </resource>
51
- </fixture>
52
- <fixture id="parameters-populate-B4-CCDA-by-contained">
53
- <resource>
54
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/parameters-B4-CCDA-by-contained.xml"/>
55
- </resource>
56
- </fixture>
57
- <fixture id="questionnaireresponse-expected-ussg-fht-empty">
58
- <resource>
59
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/questionnaireresponse-expected-ussg-fht-empty.xml"/>
60
- </resource>
61
- </fixture>
62
- <fixture id="questionnaireresponse-expected-ussg-fht-CCDA">
63
- <resource>
64
- <reference value="/Connectathon11/Track11-SDC/_reference/resources/questionnaireresponse-expected-ussg-fht-CCDA.xml"/>
65
- </resource>
66
- </fixture>
67
- <profile id="sdc-questionnaireresponse-profile">
68
- <reference value="http://hl7.org/fhir/StructureDefinition/sdc-response"/>
69
- </profile>
70
- <variable>
71
- <name value="questionnaire"/>
72
- <path value="Bundle/entry/resource/Questionnaire"/>
73
- <sourceId value="questionnaire-create-ussg-fht"/>
74
- </variable>
75
- <setup>
76
- <action>
77
- <operation>
78
- <type>
79
- <system value="http://hl7.org/fhir/testscript-operation-codes"/>
80
- <code value="transaction"/>
81
- </type>
82
- <resource value="Bundle"/>
83
- <description value="Ensure that the relevant questionnaire to generate the response from is present (along with referenced value sets, data elements and concept map"/>
84
- <accept value="xml"/>
85
- <contentType value="xml"/>
86
- <sourceId value="questionnaire-create-ussg-fht"/>
87
- </operation>
88
- </action>
89
- <action>
90
- <operation>
91
- <type>
92
- <system value="http://hl7.org/fhir/testscript-operation-codes"/>
93
- <code value="update"/>
94
- </type>
95
- <resource value="Binary"/>
96
- <description value="Create the CCDA binary to use in pre-population (or ensure that it's updated to contain the right content)"/>
97
- <accept value="xml"/>
98
- <params value="/ccda21-prepop1"/>
99
- <requestHeader>
100
- <field value="Content-Type"/>
101
- <value value="application/xml"/>
102
- </requestHeader>
103
- <sourceId value="binary-create-ussg-ccda2_1-prepop"/>
104
- </operation>
105
- </action>
106
- </setup>
107
- <test>
108
- <name value="Prepopulate empty Questionnaire by resource invocation"/>
109
- <description value="Perform pre-population of a questionnaire passing no data and invoking the operation on the specific resource id."/>
110
- <action>
111
- <operation>
112
- <type>
113
- <system value="http://hl7.org/fhir/testscript-operation-codes"/>
114
- <code value="populate"/>
115
- </type>
116
- <resource value="Patient"/>
117
- <description value="Generate questionnaire"/>
118
- <accept value="xml"/>
119
- <contentType value="xml"/>
120
- <params value="/54127-6/$populate"/>
121
- <sourceId value="parameters-populate-A1-empty-on-instance"/>
122
- </operation>
123
- </action>
124
- <action>
125
- <assert>
126
- <validateProfileId value="sdc-questionnaireresponse-profile"/>
127
- </assert>
128
- </action>
129
- <action>
130
- <assert>
131
- <contentType value="xml"/>
132
- <warningOnly value="true"/>
133
- </assert>
134
- </action>
135
- <action>
136
- <assert>
137
- <description value="Confirm that the response contains the populated questionnaire."/>
138
- <minimumId value="questionnaireresponse-expected-ussg-fht-empty"/>
139
- </assert>
140
- </action>
141
- </test>
142
- </TestScript>