plan_executor 1.0.2 → 1.8.0

data/fixtures/validation/observations/observation-example.xml

@@ -0,0 +1,66 @@
+<?xml version="1.0" encoding="UTF-8"?><Observation xmlns="http://hl7.org/fhir">
+	<id value="example"/>
+	<!--    the mandatory quality flags:    -->
+	<text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example</p><p><b>status</b>: final</p><p><b>category</b>: Vital Signs <span>(Details : {http://hl7.org/fhir/observation-category code &#39;vital-signs&#39; = &#39;Vital Signs&#39;, given as &#39;Vital Signs&#39;})</span></p><p><b>code</b>: Body Weight <span>(Details : {LOINC code &#39;29463-7&#39; = &#39;Body weight&#39;, given as &#39;Body Weight&#39;}; {LOINC code &#39;3141-9&#39; = &#39;Body weight Measured&#39;, given as &#39;Body weight Measured&#39;}; {SNOMED CT code &#39;27113001&#39; = &#39;Body weight (observable entity)&#39;, given as &#39;Body weight&#39;}; {http://acme.org/devices/clinical-codes code &#39;body-weight&#39; = &#39;body-weight&#39;, given as &#39;Body Weight&#39;})</span></p><p><b>subject</b>: <a>Patient/example</a></p><p><b>encounter</b>: <a>Encounter/example</a></p><p><b>effective</b>: Mar 28, 2016</p><p><b>value</b>: 185 lbs<span> (Details: UCUM code [lb_av] = &#39;lb_av&#39;)</span></p></div></text><status value="final"/>
+	<!--   category code is A code that classifies the general type of observation being made. This is used for searching, sorting and display purposes.  -->
+	<category>
+		<coding>
+			<system value="http://hl7.org/fhir/observation-category"/>
+			<code value="vital-signs"/>
+			<display value="Vital Signs"/>
+		</coding>
+	</category>
+	<!--   
+    Observations are often coded in multiple code systems.
+      - LOINC provides codes of varying granularity (though not usefully more specific in this particular case) and more generic LOINCs  can be mapped to more specific codes as shown here
+      - snomed provides a clinically relevant code that is usually less granular than LOINC
+      - the source system provides its own code, which may be less or more granular than LOINC
+     -->
+	<code>
+		<!--    LOINC - always recommended to have a LOINC code    -->
+		<coding>
+			<system value="http://loinc.org"/>
+			<code value="29463-7"/> <!--  more generic methodless LOINC  -->
+			<display value="Body Weight"/>
+		</coding>
+		<coding>
+			<system value="http://loinc.org"/>
+			<code value="3141-9"/><!--  translation is more specific method = measured LOINC  -->
+			<display value="Body weight Measured"/>
+		</coding>
+		<!--    SNOMED CT Codes - becoming more common    -->
+		<coding>
+			<system value="http://snomed.info/sct"/>
+			<code value="27113001"/>
+			<display value="Body weight"/>
+		</coding>
+		<!--    Also, a local code specific to the source system    -->
+		<coding>
+			<system value="http://acme.org/devices/clinical-codes"/>
+			<code value="body-weight"/>
+			<display value="Body Weight"/>
+		</coding>
+	</code>
+	<subject>
+		<reference value="Patient/example"/>
+	</subject>
+	<encounter>
+		<reference value="Encounter/example"/>
+	</encounter>
+	<effectiveDateTime value="2016-03-28"/>
+	<!--    In FHIR, units may be represented twice. Once in the
+    agreed human representation, and once in a coded form.
+    Both is best, since it's not always possible to infer
+    one from the other in code.
+
+    When a computable unit is provided, UCUM (http://unitsofmeasure.org)
+    is always preferred, but it doesn't provide notional units (such as
+    "tablet"), etc. For these, something else is required (e.g. SNOMED CT)
+      -->
+	<valueQuantity>
+		<value value="185"/>
+		<unit value="lbs"/>
+		<system value="http://unitsofmeasure.org"/>
+		<code value="[lb_av]"/>
+	</valueQuantity>
+</Observation>

data/lib/FHIR_structure.json

@@ -16,6 +16,8 @@
                   "name": "vread"
                 },{
                   "name": "update"
+                },{
+                  "name": "conditional-update"
                 },{
                   "name": "delete"
                 },{
@@ -27,6 +29,8 @@
               "children": [
                 {
                   "name": "create"
+                },{
+                  "name": "conditional-create"
                 },{
                   "name": "search"
                 },{
@@ -44,6 +48,8 @@
                   "name": "history-system"
                 },{
                   "name": "search-system"
+                },{
+                  "name": "batch-system"
                 }
               ]
             }
@@ -108,8 +114,6 @@
                   "name": "family member history"
                 },{
                   "name": "clinical impression"
-                },{
-                  "name": "risk assessment"
                 },{
                   "name": "detected issue"
                 }
@@ -119,6 +123,8 @@
               "children": [
                 {
                   "name": "care plan"
+                },{
+                  "name": "care team"
                 },{
                   "name": "goal"
                 },{
@@ -126,18 +132,22 @@
                 },{
                   "name": "procedure request"
                 },{
-                  "name": "nutrition order"
+                  "name": "nutrition request",
+                  "aka": ["nutrition order"]
+                },{
+                  "name": "risk assessment"
                 },{
                   "name": "vision prescription"
                 }
               ]
             },{
-              "name": "Medication Management",
+              "name": "Medication & Immunization",
               "children": [
                 {
                   "name": "medication"
                 },{
-                  "name": "medication order"
+                  "name": "medication request",
+                  "aka": ["medication order"]
                 },{
                   "name": "medication administration"
                 },{
@@ -158,13 +168,17 @@
                 },{
                   "name": "diagnostic report"
                 },{
-                  "name": "diagnostic order"
+                  "name": "diagnostic request",
+                  "aka": ["diagnostic order"]
                 },{
                   "name": "imaging study"
                 },{
-                  "name": "imaging object selection"
+                  "name": "imaging manifest",
+                  "aka": ["imaging object selection"]
                 },{
                   "name": "specimen"
+                },{
+                  "name": "sequence"
                 },{
                   "name": "body site"
                 }
@@ -172,41 +186,41 @@
             }
           ]
         },{
-          "name": "Administrative",
+          "name": "Administration",
+          "aka": ["Administrative", "Identification"],
           "children": [
             {
               "name": "Individuals",
               "children": [
                 {
                   "name": "patient"
+                },{
+                  "name": "group"
+                },{
+                  "name": "person"
                 },{
                   "name": "related person"
                 },{
                   "name": "practitioner"
+                },{
+                  "name": "practitioner role"
                 }
               ]
             },{
-              "name": "Groups",
+              "name": "Entities",
               "children": [
                 {
                   "name": "organization"
                 },{
                   "name": "healthcare service"
                 },{
-                  "name": "group"
-                }
-              ]
-            },{
-              "name": "Entities",
-              "children": [
-                {
                   "name": "location"
                 },{
                   "name": "substance"
                 },{
-                  "name": "person"
+                  "name": "endpoint"
                 },{
-                  "name": "contract"
+                  "name": "linkage"
                 }
               ]
             },{
@@ -220,12 +234,8 @@
                   "name": "device metric"
                 }
               ]
-            }
-          ]
-        },{
-          "name": "Work Flow",
-          "children": [
-            { "name": "Patient Management",
+            },{
+              "name": "Patient Management",
               "children": [
                 {
                   "name": "encounter"
@@ -233,14 +243,46 @@
                   "name": "episode of care"
                 },{
                   "name": "flag"
+                },{
+                  "name": "account"
                 },{
                   "name": "communication"
+                },{
+                  "name": "communication request"
                 }
               ]
             },{
-              "name": "Scheduling",
+              "name": "Research",
               "children": [
                 {
+                  "name": "research study"
+                },{
+                  "name": "research subject"
+                }
+              ]
+            },{
+              "name": "Security & Privacy",
+              "children": [
+                {
+                  "name": "provenance"
+                },{
+                  "name": "audit event"
+                },{
+                  "name": "consent"
+                }
+              ]
+            }
+          ]
+        },{
+          "name": "Work Flow",
+          "children": [
+            { "name": "Scheduling",
+              "children": [
+                {
+                  "name": "task"
+                },{
+                  "name": "subscription"
+                },{
                   "name": "appointment"
                 },{
                   "name": "appointment response"
@@ -251,15 +293,10 @@
                 }
               ]
             },{
-              "name": "Order Management",
+              "name": "Events",
+              "aka": ["Workflow", "Order Management"],
               "children": [
                 {
-                  "name": "order"
-                },{
-                  "name": "order response"
-                },{
-                  "name": "communication request"
-                },{
                   "name": "device use request"
                 },{
                   "name": "device use statement"
@@ -273,39 +310,55 @@
                   "name": "supply request"
                 }
               ]
+            },{
+              "name": "Clinical Reasoning",
+              "children": [
+                {
+                  "name": "service definition",
+                  "aka": ["decision support service module"]
+                },{
+                  "name": "guidance response"
+                },{
+                  "name": "library"
+                },{
+                  "name": "measure"
+                },{
+                  "name": "measure report"
+                },{
+                  "name": "activity definition"
+                },{
+                  "name": "request group"
+                },{
+                  "name": "plan definition"
+                }
+              ]
             }
           ]
         },{
-          "name": "Infrastructure",
+          "name": "Foundation",
           "children": [
             {
-              "name": "Information Management",
+              "name": "Documents & Questionnaires",
               "children": [
                 {
                   "name": "questionnaire"
                 },{
                   "name": "questionnaire response"
-                },{
-                  "name": "provenance"
-                },{
-                  "name": "audit event"
-                }
-              ]
-            },{
-              "name": "Documents",
-              "children": [
-                {
-                  "name": "list"
                 },{
                   "name": "composition"
+                },{
+                  "name": "document manifest"
                 },{
                   "name": "document reference"
                 },{
-                  "name": "document manifest"
+                  "name": "list"
+                },{
+                  "name": "basic"
                 }
               ]
             },{
-              "name": "Structures",
+              "name": "Exchange",
+              "aka": ["Structure", "Structures"],
               "children": [
                 {
                   "name": "media"
@@ -314,65 +367,59 @@
                 },{
                   "name": "bundle"
                 },{
-                  "name": "basic"
-                }
-              ]
-            },{
-              "name": "Exchange",
-              "children": [
-                {
                   "name": "message header"
                 },{
                   "name": "operation outcome"
-                },{
-                  "name": "subscription"
                 },{
                   "name": "parameters"
                 }
               ]
-            }
-          ]
-        },{
-          "name": "Conformance",
-          "children": [
-            {
-              "name": "Terminology",
-              "children": [
-                {
-                  "name": "value set"
-                },{
-                  "name": "concept map"
-                },{
-                  "name": "naming system"
-                }
-              ]
             },{
-              "name": "Content",
+              "name": "Conformance",
               "children": [
                 {
                   "name": "structure definition"
+                },{
+                  "name": "structure map"
                 },{
                   "name": "data element"
+                },{
+                  "name": "capability statement",
+                  "aka": ["conformance"]
+                },{
+                  "name": "message definition"
+                },{
+                  "name": "operation definition"
+                },{
+                  "name": "search parameter"
+                },{
+                  "name": "compartment definition"
+                },{
+                  "name": "implementation guide"
                 }
               ]
             },{
-              "name": "Behavior",
+              "name": "Terminology",
               "children": [
                 {
-                  "name": "conformance"
+                  "name": "code system"
                 },{
-                  "name": "operation definition"
+                  "name": "value set"
                 },{
-                  "name": "search parameter"
+                  "name": "concept map"
+                },{
+                  "name": "expansion profile"
+                },{
+                  "name": "naming system"
                 }
               ]
             },{
-              "name": "Miscellaneous",
+              "name": "Implementation Support",
               "children": [
                 {
-                  "name": "implementation guide"
-                },{
                   "name": "test script"
+                },{
+                  "name": "test report"
                 }
               ]
             }
@@ -384,8 +431,6 @@
               "name": "Support",
               "children": [
                 {
-                  "name": "account"
-                },{
                   "name": "coverage"
                 },{
                   "name": "eligibility request"
@@ -420,6 +465,8 @@
               "children": [
                 {
                   "name": "explanation of benefit"
+                },{
+                  "name": "contract"
                 }
               ]
             }