plan_executor 1.0.2 → 1.8.0

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Files changed (420) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +1 -0
  3. data/.travis.yml +3 -2
  4. data/Gemfile +3 -6
  5. data/Gemfile.lock +52 -48
  6. data/README.md +2 -2
  7. data/fixtures/attachment/ccda_pdf.pdf +0 -0
  8. data/fixtures/attachment/ccda_pdf_base64.txt +2489 -0
  9. data/fixtures/attachment/ccda_structured.xml +1976 -0
  10. data/fixtures/attachment/ccda_unstructured.xml +2563 -0
  11. data/fixtures/daf/conformance-daf-query-responder.xml +2024 -193
  12. data/fixtures/diagnostic_report/diagnosticreport-familyhistory-create.xml +67 -0
  13. data/fixtures/diagnostic_report/diagnosticreport-hlatyping-create.xml +64 -0
  14. data/fixtures/diagnostic_report/diagnosticreport-pathologyreport-create.xml +312 -0
  15. data/fixtures/diagnostic_report/dr-100.xml +3 -3
  16. data/fixtures/diagnostic_report/dr-200.xml +5 -5
  17. data/fixtures/diagnostic_report/dr-300.xml +3 -3
  18. data/fixtures/diagnostic_report/dr-400.xml +3 -3
  19. data/fixtures/{diagnostic_order → diagnostic_request}/do-100.xml +57 -64
  20. data/fixtures/diagnostic_request/do-200.xml +73 -0
  21. data/fixtures/{diagnostic_order → diagnostic_request}/do-300.xml +73 -91
  22. data/{lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder → fixtures/diagnostic_request}/do-400.xml +74 -88
  23. data/fixtures/family_member_history/familymemberhistory-familyhistory-create.xml +27 -0
  24. data/fixtures/financial/claim-example-oral-average.xml +199 -0
  25. data/fixtures/financial/claim-example-oral-orthoplan.xml +298 -0
  26. data/fixtures/financial/claim-example.xml +98 -0
  27. data/fixtures/financial/eligibilityrequest-example.xml +40 -0
  28. data/fixtures/observation/obs-401.xml +7 -17
  29. data/fixtures/observation/obs-402.xml +7 -17
  30. data/fixtures/observation/obs-403.xml +4 -29
  31. data/fixtures/observation/obs-407.xml +4 -11
  32. data/fixtures/observation/observation-datawarehouse-create.xml +72 -0
  33. data/fixtures/observation/observation-familyhistory-create.xml +61 -0
  34. data/fixtures/observation/observation-germline-create.xml +72 -0
  35. data/fixtures/observation/observation-register-create.xml +72 -0
  36. data/fixtures/patch/medicationrequest-simple.xml +16 -0
  37. data/fixtures/patient/patient-example-updated.xml +1 -7
  38. data/fixtures/patient/patient-example-us-extensions.xml +119 -0
  39. data/fixtures/patient/patient-example.xml +46 -27
  40. data/fixtures/patient/patient-familyhistory-create.xml +45 -0
  41. data/fixtures/patient/patient-register-create.xml +47 -0
  42. data/fixtures/practitioner/practitioner-register-create.xml +32 -0
  43. data/fixtures/record/condition-example-f201-fever.xml +54 -49
  44. data/fixtures/record/condition-example-f205-infection.xml +16 -15
  45. data/fixtures/record/diagnosticreport-example-f201-brainct.xml +45 -18
  46. data/fixtures/record/encounter-example-f201-20130404.xml +42 -15
  47. data/fixtures/record/encounter-example-f202-20130128.xml +57 -15
  48. data/fixtures/record/observation-example-f202-temperature.xml +85 -60
  49. data/fixtures/record/organization-example-f201-aumc.xml +87 -4
  50. data/fixtures/record/organization-example-f203-bumc.xml +53 -4
  51. data/fixtures/record/patient-example-f201-roel.xml +108 -8
  52. data/fixtures/record/practitioner-example-f201-ab.xml +73 -14
  53. data/fixtures/record/procedure-example-f201-tpf.xml +39 -9
  54. data/fixtures/scheduling/slot-simple.xml +1 -1
  55. data/fixtures/sequence/sequence-register-create.xml +31 -0
  56. data/fixtures/specimen/spec-100.xml +8 -8
  57. data/fixtures/specimen/spec-400.xml +11 -11
  58. data/fixtures/specimen/spec-uslab-example1.xml +11 -11
  59. data/fixtures/specimen/specimen-familyhistory-create.xml +54 -0
  60. data/fixtures/specimen/specimen-register-create.xml +49 -0
  61. data/fixtures/terminology/codesystem-data-types.json +230 -0
  62. data/fixtures/terminology/codesystem-resource-types.json +482 -0
  63. data/fixtures/terminology/codesystem-simple.xml +129 -0
  64. data/fixtures/terminology/conceptmap-example.xml +141 -0
  65. data/fixtures/terminology/v2-codesystem.json +1297 -0
  66. data/fixtures/terminology/v2-valueset.json +16 -0
  67. data/fixtures/terminology/valueset-defined-types.json +25 -0
  68. data/fixtures/terminology/valueset-example.xml +111 -0
  69. data/fixtures/validation/observation.profile.xml +1534 -253
  70. data/fixtures/validation/observations/observation-example.xml +66 -0
  71. data/lib/FHIR_structure.json +129 -82
  72. data/lib/daf_resource_generator.rb +7 -7
  73. data/lib/data/resources.rb +50 -30
  74. data/lib/ext/client.rb +2 -2
  75. data/lib/plan_executor.rb +6 -1
  76. data/lib/resource_generator.rb +413 -212
  77. data/lib/tasks/tasks.rake +151 -20
  78. data/lib/tests/assertions.rb +24 -18
  79. data/lib/tests/base_test.rb +17 -3
  80. data/lib/tests/suites/argonaut_provider_connectathon_test.rb +234 -0
  81. data/lib/tests/suites/base_suite.rb +7 -3
  82. data/lib/tests/suites/connectathon_attachment_track_test.rb +124 -0
  83. data/lib/tests/suites/connectathon_audit_track.rb +113 -69
  84. data/lib/tests/suites/connectathon_care_plan_track.rb +237 -0
  85. data/lib/tests/suites/connectathon_fetch_patient_record.rb +40 -39
  86. data/lib/tests/suites/connectathon_financial_track.rb +231 -23
  87. data/lib/tests/suites/connectathon_genomics_track_test.rb +255 -0
  88. data/lib/tests/suites/connectathon_lab_order_track.rb +131 -104
  89. data/lib/tests/suites/connectathon_patch_track.rb +125 -0
  90. data/lib/tests/suites/connectathon_patient_track.rb +75 -68
  91. data/lib/tests/suites/connectathon_profile_validation.rb +9 -8
  92. data/lib/tests/suites/connectathon_scheduling_track.rb +127 -70
  93. data/lib/tests/suites/connectathon_terminology_track.rb +211 -34
  94. data/lib/tests/suites/daf_profiles_test.rb +112 -72
  95. data/lib/tests/suites/format_test.rb +113 -255
  96. data/lib/tests/suites/history_test.rb +72 -68
  97. data/lib/tests/suites/read_test.rb +31 -27
  98. data/lib/tests/suites/resource_test.rb +283 -85
  99. data/lib/tests/suites/search_test.rb +5 -3
  100. data/lib/tests/suites/search_test_robust.rb +8 -76
  101. data/lib/tests/suites/sprinkler_search_test.rb +104 -84
  102. data/lib/tests/suites/suite_engine.rb +17 -23
  103. data/lib/tests/suites/transaction_test.rb +117 -174
  104. data/lib/tests/testscripts/base_testscript.rb +425 -189
  105. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-base-client-id-json.xml +517 -0
  106. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-base-client-id-xml.xml +517 -0
  107. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-bonus-client-id-json.xml +648 -0
  108. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Client Assigned Id/connectathon-14-patient-bonus-client-id-xml.xml +648 -0
  109. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/README.html +68 -0
  110. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-base-server-id-json.xml +515 -0
  111. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-base-server-id-xml.xml +515 -0
  112. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-bonus-server-id-json.xml +645 -0
  113. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/Server Assigned Id/connectathon-14-patient-bonus-server-id-xml.xml +642 -0
  114. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/capabilities/PatientCapabilityStatement.xml +43 -0
  115. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers-min.json +1 -3
  116. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers-min.xml +0 -0
  117. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers.json +5 -10
  118. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-PeterChalmers.xml +5 -5
  119. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers-min.json +1 -3
  120. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers-min.xml +0 -0
  121. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers.json +5 -10
  122. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-create-bonus-PeterChalmers.xml +4 -5
  123. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-PeterChalmers.json +96 -0
  124. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-PeterChalmers.xml +103 -0
  125. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-bonus-PeterChalmers.json +104 -0
  126. data/lib/tests/testscripts/scripts/connectathon/Patient-01-Intro/_reference/resources/patient-create-client-id-bonus-PeterChalmers.xml +108 -0
  127. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers-min.json +1 -3
  128. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers-min.xml +0 -0
  129. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers.json +6 -10
  130. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-PeterChalmers.xml +6 -5
  131. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers-min.json +1 -3
  132. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers-min.xml +0 -0
  133. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers.json +7 -11
  134. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus1-PeterChalmers.xml +5 -5
  135. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers-min.json +2 -4
  136. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers-min.xml +1 -1
  137. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers.json +7 -11
  138. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient → scripts/connectathon/Patient-01-Intro}/_reference/resources/patient-update-bonus2-PeterChalmers.xml +8 -7
  139. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/01-RegisterPatient/connectathon-14-patient-fhirclient-01-register-client-id-xml.xml +306 -0
  140. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/01-RegisterPatient/connectathon-14-patient-fhirclient-01-register-server-id-xml.xml +317 -0
  141. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/02-PatientUpdate/connectathon-14-patient-fhirclient-02-update-client-id-xml.xml +346 -0
  142. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/02-PatientUpdate/connectathon-14-patient-fhirclient-02-update-server-id-xml.xml +385 -0
  143. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/capabilities/PatientCapabilityStatement.json +50 -0
  144. data/lib/tests/testscripts/{xml/Connectathon11/Track1-Patient/_reference/conformance/PatientConformance.xml → scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/capabilities/PatientCapabilityStatement.xml} +10 -2
  145. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-client-id.json +21 -0
  146. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-client-id.xml +15 -0
  147. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-server-id.json +20 -0
  148. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-create-server-id.xml +14 -0
  149. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-client-id.json +21 -0
  150. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-client-id.xml +15 -0
  151. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-server-id.json +20 -0
  152. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRClient/_reference/resources/patient-update-server-id.xml +14 -0
  153. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-client-id-json.xml +262 -0
  154. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-client-id-xml.xml +262 -0
  155. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-server-id-json.xml +273 -0
  156. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/01-RegisterPatient/connectathon-14-patient-fhirserver-01-register-server-id-xml.xml +273 -0
  157. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-client-id-json.xml +290 -0
  158. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-client-id-xml.xml +290 -0
  159. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-server-id-json.xml +326 -0
  160. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/02-PatientUpdate/connectathon-14-patient-fhirserver-02-update-server-id-xml.xml +326 -0
  161. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-client-id-json.xml +247 -0
  162. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-client-id-xml.xml +247 -0
  163. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-server-id-json.xml +282 -0
  164. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/03-PatientRead/connectathon-14-patient-fhirserver-03-read-server-id-xml.xml +281 -0
  165. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-client-id-json.xml +330 -0
  166. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-client-id-xml.xml +330 -0
  167. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-server-id-json.xml +366 -0
  168. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/04-PatientHistory/connectathon-14-patient-fhirserver-04-history-server-id-xml.xml +366 -0
  169. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-client-id-json.xml +527 -0
  170. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-client-id-xml.xml +527 -0
  171. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-server-id-json.xml +519 -0
  172. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/05-PatientVRead/connectathon-14-patient-fhirserver-05-vread-server-id-xml.xml +519 -0
  173. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-client-id-json.xml +290 -0
  174. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-client-id-xml.xml +290 -0
  175. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-server-id-json.xml +288 -0
  176. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/06-PatientSearching/connectathon-14-patient-fhirserver-06-search-server-id-xml.xml +288 -0
  177. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-client-id-json.xml +252 -0
  178. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-client-id-xml.xml +252 -0
  179. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-server-id-json.xml +284 -0
  180. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/07-PatientDeletion/connectathon-14-patient-fhirserver-07-delete-server-id-xml.xml +284 -0
  181. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-client-id-json.xml +897 -0
  182. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-client-id-xml.xml +897 -0
  183. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-server-id-json.xml +963 -0
  184. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/99-PatientAll/connectathon-14-patient-fhirserver-99-all-server-id-xml.xml +963 -0
  185. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/capabilities/PatientCapabilityStatement.json +50 -0
  186. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/capabilities/PatientCapabilityStatement.xml +42 -0
  187. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-client-id.json +86 -0
  188. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-client-id.xml +62 -0
  189. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-server-id.json +85 -0
  190. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-create-server-id.xml +61 -0
  191. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-client-id.json +86 -0
  192. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-client-id.xml +62 -0
  193. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-server-id.json +86 -0
  194. data/lib/tests/testscripts/scripts/connectathon/Patient-02-Formal/FHIRServer/_reference/resources/patient-update-server-id.xml +62 -0
  195. data/lib/tests/testscripts/scripts/spec/_reference/resources/patient-example-update.json +145 -0
  196. data/lib/tests/testscripts/scripts/spec/_reference/resources/patient-example.json +146 -0
  197. data/lib/tests/testscripts/scripts/spec/testscript-example-history.xml +191 -0
  198. data/lib/tests/testscripts/scripts/spec/testscript-example-multisystem.xml +190 -0
  199. data/lib/tests/testscripts/scripts/spec/testscript-example-readtest.xml +178 -0
  200. data/lib/tests/testscripts/scripts/spec/testscript-example-rule.xml +266 -0
  201. data/lib/tests/testscripts/scripts/spec/testscript-example-search.xml +177 -0
  202. data/lib/tests/testscripts/scripts/spec/testscript-example-update.xml +163 -0
  203. data/lib/tests/testscripts/scripts/spec/testscript-example.xml +228 -0
  204. data/lib/tests/testscripts/testscript_engine.rb +36 -22
  205. data/logs/.keep +0 -0
  206. data/plan_executor.gemspec +11 -3
  207. data/test/test_helper.rb +3 -3
  208. data/test/unit/fixtures_test.rb +24 -24
  209. data/test/unit/metadata_test.rb +19 -9
  210. data/test/unit/resource_generator_test.rb +20 -0
  211. metadata +244 -249
  212. data/fixtures/diagnostic_order/do-200.xml +0 -121
  213. data/fixtures/diagnostic_order/do-400.xml +0 -88
  214. data/fixtures/financial/claim-example-average.xml +0 -168
  215. data/fixtures/financial/claim-example-simple.xml +0 -67
  216. data/fixtures/order/order-100.xml +0 -61
  217. data/fixtures/order/order-200.xml +0 -61
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  398. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-400.xml +0 -70
  399. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Specimen/spec-uslab-example1.xml +0 -82
  400. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 1 Document.txt +0 -122
  401. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 2 Document.txt +0 -103
  402. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 3 Document.txt +0 -201
  403. data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/Testscript 4 Document.txt +0 -310
  404. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/MedicationStatementCreate.xml +0 -11
  405. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/conformance/PatientSearchType.xml +0 -15
  406. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-create.json +0 -39
  407. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/_reference/resources/medicationstatement-patch.json +0 -3
  408. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json-if-match.xml +0 -321
  409. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-medicationstatement-json.xml +0 -303
  410. data/lib/tests/testscripts/xml/Connectathon11/Track9-Patch/track9-patch-peer2peer-patient-json.xml +0 -235
  411. data/test/fixtures/testscript-example.xml +0 -202
  412. data/test/fixtures/testscript-history.xml +0 -143
  413. data/test/fixtures/testscript-readtest.xml +0 -272
  414. data/test/fixtures/testscript-search.xml +0 -282
  415. data/test/fixtures/testscript-update.xml +0 -147
  416. data/test/unit/argonaut_sprint6_test.rb +0 -31
  417. data/test/unit/argonaut_sprint7_test.rb +0 -21
  418. data/test/unit/basic_test.rb +0 -27
  419. data/test/unit/fetch_patient_record_test.rb +0 -357
  420. data/test/unit/financial_test.rb +0 -41
data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-200.xml DELETED
@@ -1,121 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <DiagnosticOrder xmlns="http://hl7.org/fhir">
3
- <id value="do-200"/>
4
- <text>
5
- <status value="generated"/>
6
- <div xmlns="http://www.w3.org/1999/xhtml">
7
- <p>
8
- <b>Generated Narrative with Details</b>
9
- </p>
10
- <p>
11
- <b>id</b>: do-200</p>
12
- <p>
13
- <b>subject</b>:
14
- <a href="Patient/patient-uslab-example1">Todd Lerr</a>
15
- </p>
16
- <p>
17
- <b>orderer</b>:
18
- <a href="Practitioner/pract-uslab-example1">Dr Leonard T Bloodraw Jr</a>
19
- </p>
20
- <p>
21
- <b>identifier</b>: PLAC = do-200</p>
22
- <p>
23
- <b>reason</b>: Abnormal lead level in blood
24
- <span style="background: LightGoldenRodYellow ">(Details : {http://www.icd10data.com/icd10pcs code "R78.71" := "R78.71", given as "Abnormal lead level in blood"})</span>
25
- </p>
26
- <p>
27
- <b>supportingInformation</b>: ,
28
- <a href="Condition/cond-uslab-example1">Lead Exposure</a>
29
- </p>
30
- <p>
31
- <b>status</b>: requested</p>
32
- <p>
33
- <b>priority</b>: routine</p>
34
- <p>
35
- <b>note</b>: Annontation: patient is afraid of needles</p>
36
- </div>
37
- </text>
38
- <subject>
39
- <reference value="Patient/patient-uslab-example1"/>
40
- <display value="Todd Lerr"/>
41
- </subject>
42
- <orderer>
43
- <reference value="Practitioner/pract-uslab-example1"/>
44
- <display value="Dr Leonard T Bloodraw Jr"/>
45
- </orderer>
46
- <identifier>
47
- <type>
48
- <coding>
49
- <code value="http://hl7.org/fhir/identifier-type"/>
50
- <display value="PLAC"/>
51
- </coding>
52
- </type>
53
- <system value="http://goodhealth.org/identifiers"/>
54
- <value value="do-200"/>
55
- </identifier>
56
- <reason>
57
- <coding>
58
- <system value="http://www.icd10data.com/icd10pcs"/>
59
- <code value="R78.71"/>
60
- <display value="Abnormal lead level in blood"/>
61
- </coding>
62
- <text value="Abnormal lead level in blood"/>
63
- </reason>
64
- <supportingInformation>
65
- <reference value="Observation/obs-uslab-example1"/>
66
- <display value="Prior Results Observation"/>
67
- </supportingInformation>
68
- <supportingInformation>
69
- <reference value="Condition/cond-uslab-example1"/>
70
- <display value="Lead Exposure"/>
71
- </supportingInformation>
72
- <!-- EH this specimen is for when lab has existing
73
- <specimen>
74
- <reference value="Specimen/uslab-example1"/>
75
- <display value="Whole blood"/>
76
- </specimen>
77
- -->
78
- <!-- EH this is set to 'requested' by the Placer -->
79
- <status value="requested"/>
80
- <priority value="routine"/>
81
- <event>
82
- <!-- EH this is set to 'requested' by the Placer is required element in core resource -->
83
- <status value="requested"/>
84
- <!-- EH:bound to closed value setUSLAB Diagnostic Order Event Codes -->
85
- <description>
86
- <coding>
87
- <code value="new-request"/>
88
- </coding>
89
- </description>
90
- <!-- EH: Showing dateTime to ss with TZO although only needed to Day -->
91
- <dateTime value="2014-12-04T15:42:15-08:00"/>
92
- <!-- EH: the event is the order placer requesting a test -->
93
- </event>
94
- <item>
95
- <!-- EH : The local and /or LOINC test codes go here -->
96
- <code>
97
- <!-- EH: LOINC code gos here -->
98
- <coding>
99
- <system value="http://loinc.org"/>
100
- <code value="5671-3"/>
101
- <display value="Lead [Mass/volume] in Blood"/>
102
- <!-- EH: LOINC code gos here -->
103
- </coding>
104
- <coding>
105
- <system value="http://lis.acmelabs.org/codes"/>
106
- <code value="200"/>
107
- <display value="Blood Lead"/>
108
- </coding>
109
- <text value="Blood Lead"/>
110
- </code>
111
- <specimen>
112
- <reference value="Specimen/spec-uslab-example1"/>
113
- <display value="Whole blood"/>
114
- </specimen>
115
- <!-- EH this is set to 'requested' by the Placer -->
116
- <status value="requested"/>
117
- </item>
118
- <note>
119
- <text value="patient is afraid of needles"/>
120
- </note>
121
- </DiagnosticOrder>
data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-300-update.xml DELETED
@@ -1,91 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <DiagnosticOrder xmlns="http://hl7.org/fhir">
3
- <id value="do-300-update"/>
4
- <text>
5
- <status value="generated"/>
6
- <div xmlns="http://www.w3.org/1999/xhtml">
7
- <p>
8
- <b>Generated Narrative with Details</b>
9
- </p>
10
- <p>
11
- <b>id</b>: do-300-update</p>
12
- <p>
13
- <b>subject</b>:
14
- <a href="Patient/patient-uslab-example1">Todd G. Lerr</a>
15
- </p>
16
- <p>
17
- <b>orderer</b>:
18
- <a href="Practitioner/pract-uslab-example1">Leonard T Bloodraw</a>
19
- </p>
20
- <p>
21
- <b>identifier</b>: PLAC = do-300-update</p>
22
- <p>
23
- <b>reason</b>: Other pneumonia, unspecified organism
24
- <span style="background: LightGoldenRodYellow ">(Details : {http://hl7.org/fhir/sid/icd-10-us code "J18.8" := "J18.8", given as "Other pneumonia, unspecified organism"})</span>
25
- </p>
26
- <p>
27
- <b>specimen</b>:
28
- <a href="Specimen/spec-uslab-example1">Blood Specimen</a>
29
- </p>
30
- <p>
31
- <b>status</b>: completed</p>
32
- <p>
33
- <b>priority</b>: routine</p>
34
- </div>
35
- </text>
36
- <subject>
37
- <reference value="Patient/patient-uslab-example1"/>
38
- <display value="Todd G. Lerr"/>
39
- </subject>
40
- <orderer>
41
- <reference value="Practitioner/pract-uslab-example1"/>
42
- <display value="Leonard T Bloodraw"/>
43
- </orderer>
44
- <identifier>
45
- <type>
46
- <coding>
47
- <code value="http://hl7.org/fhir/identifier-type"/>
48
- <display value="PLAC"/>
49
- </coding>
50
- </type>
51
- <system value="http://goodhealth.org/identifiers"/>
52
- <value value="do-300-update"/>
53
- </identifier>
54
- <reason>
55
- <coding>
56
- <system value="http://hl7.org/fhir/sid/icd-10-us"/>
57
- <code value="J18.8"/>
58
- <display value="Other pneumonia, unspecified organism"/>
59
- </coding>
60
- </reason>
61
- <specimen>
62
- <reference value="Specimen/spec-uslab-example1"/>
63
- <display value="Blood Specimen"/>
64
- </specimen>
65
- <status value="completed"/>
66
- <priority value="routine"/>
67
- <event>
68
- <status value="requested"/>
69
- <description>
70
- <coding>
71
- <code value="new-request"/>
72
- </coding>
73
- </description>
74
- <dateTime value="2011-01-03T14:34:28-08:00"/>
75
- </event>
76
- <item>
77
- <code>
78
- <coding>
79
- <system value="http://lis.acmelabs.org/codes"/>
80
- <code value="300"/>
81
- <display value="CBC_diff"/>
82
- </coding>
83
- <coding>
84
- <system value="http://loinc.org"/>
85
- <code value="57021-8"/>
86
- <display value="CBC W Auto Differential panel in Blood"/>
87
- </coding>
88
- </code>
89
- <status value="requested"/>
90
- </item>
91
- </DiagnosticOrder>
data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-300.xml DELETED
@@ -1,91 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <DiagnosticOrder xmlns="http://hl7.org/fhir">
3
- <id value="do-300"/>
4
- <text>
5
- <status value="generated"/>
6
- <div xmlns="http://www.w3.org/1999/xhtml">
7
- <p>
8
- <b>Generated Narrative with Details</b>
9
- </p>
10
- <p>
11
- <b>id</b>: do-300</p>
12
- <p>
13
- <b>subject</b>:
14
- <a href="Patient/patient-uslab-example1">Todd G. Lerr</a>
15
- </p>
16
- <p>
17
- <b>orderer</b>:
18
- <a href="Practitioner/pract-uslab-example1">Leonard T Bloodraw</a>
19
- </p>
20
- <p>
21
- <b>identifier</b>: PLAC = do-300</p>
22
- <p>
23
- <b>reason</b>: Other pneumonia, unspecified organism
24
- <span style="background: LightGoldenRodYellow ">(Details : {http://hl7.org/fhir/sid/icd-10-us code "J18.8" := "J18.8", given as "Other pneumonia, unspecified organism"})</span>
25
- </p>
26
- <p>
27
- <b>specimen</b>:
28
- <a href="Specimen/spec-uslab-example1">Blood Specimen</a>
29
- </p>
30
- <p>
31
- <b>status</b>: requested</p>
32
- <p>
33
- <b>priority</b>: routine</p>
34
- </div>
35
- </text>
36
- <subject>
37
- <reference value="Patient/patient-uslab-example1"/>
38
- <display value="Todd G. Lerr"/>
39
- </subject>
40
- <orderer>
41
- <reference value="Practitioner/pract-uslab-example1"/>
42
- <display value="Leonard T Bloodraw"/>
43
- </orderer>
44
- <identifier>
45
- <type>
46
- <coding>
47
- <code value="http://hl7.org/fhir/identifier-type"/>
48
- <display value="PLAC"/>
49
- </coding>
50
- </type>
51
- <system value="http://goodhealth.org/identifiers"/>
52
- <value value="do-300"/>
53
- </identifier>
54
- <reason>
55
- <coding>
56
- <system value="http://hl7.org/fhir/sid/icd-10-us"/>
57
- <code value="J18.8"/>
58
- <display value="Other pneumonia, unspecified organism"/>
59
- </coding>
60
- </reason>
61
- <specimen>
62
- <reference value="Specimen/spec-uslab-example1"/>
63
- <display value="Blood Specimen"/>
64
- </specimen>
65
- <status value="requested"/>
66
- <priority value="routine"/>
67
- <event>
68
- <status value="requested"/>
69
- <description>
70
- <coding>
71
- <code value="new-request"/>
72
- </coding>
73
- </description>
74
- <dateTime value="2011-01-03T14:34:28-08:00"/>
75
- </event>
76
- <item>
77
- <code>
78
- <coding>
79
- <system value="http://lis.acmelabs.org/codes"/>
80
- <code value="300"/>
81
- <display value="CBC_diff"/>
82
- </coding>
83
- <coding>
84
- <system value="http://loinc.org"/>
85
- <code value="57021-8"/>
86
- <display value="CBC W Auto Differential panel in Blood"/>
87
- </coding>
88
- </code>
89
- <status value="requested"/>
90
- </item>
91
- </DiagnosticOrder>
data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticOrder/do-400-update.xml DELETED
@@ -1,88 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <DiagnosticOrder xmlns="http://hl7.org/fhir">
3
- <id value="do-400-update"/>
4
- <text>
5
- <status value="generated"/>
6
- <div xmlns="http://www.w3.org/1999/xhtml">
7
- <p>
8
- <b>Generated Narrative with Details</b>
9
- </p>
10
- <p>
11
- <b>id</b>: do-400-update</p>
12
- <p>
13
- <b>subject</b>:
14
- <a href="Patient/patient-uslab-example1">Todd G. Lerr</a>
15
- </p>
16
- <p>
17
- <b>orderer</b>:
18
- <a href="Practitioner/pract-uslab-example1">Leonard T Bloodraw</a>
19
- </p>
20
- <p>
21
- <b>identifier</b>: PLAC = do-400-update</p>
22
- <p>
23
- <b>reason</b>: DIARRHEA
24
- <span style="background: LightGoldenRodYellow ">(Details : {http://hl7.org/fhir/sid/icd-10-us code "R19.7" := "R19.7", given as "Diarrhea, unspecified"})</span>
25
- </p>
26
- <p>
27
- <b>specimen</b>:
28
- <a href="Specimen/spec-400">Stool Specimen</a>
29
- </p>
30
- <p>
31
- <b>status</b>: completed</p>
32
- <p>
33
- <b>priority</b>: routine</p>
34
- </div>
35
- </text>
36
- <subject>
37
- <reference value="Patient/patient-uslab-example1"/>
38
- <display value="Todd G. Lerr"/>
39
- </subject>
40
- <orderer>
41
- <reference value="Practitioner/pract-uslab-example1"/>
42
- <display value="Leonard T Bloodraw"/>
43
- </orderer>
44
- <identifier>
45
- <type>
46
- <coding>
47
- <code value="http://hl7.org/fhir/identifier-type"/>
48
- <display value="PLAC"/>
49
- </coding>
50
- </type>
51
- <system value="http://goodhealth.org/identifiers"/>
52
- <value value="do-400-update"/>
53
- </identifier>
54
- <reason>
55
- <coding>
56
- <system value="http://hl7.org/fhir/sid/icd-10-us"/>
57
- <code value="R19.7"/>
58
- <display value="Diarrhea, unspecified"/>
59
- </coding>
60
- <text value="DIARRHEA"/>
61
- </reason>
62
- <specimen>
63
- <reference value="Specimen/spec-400"/>
64
- <display value="Stool Specimen"/>
65
- </specimen>
66
- <status value="completed"/>
67
- <priority value="routine"/>
68
- <event>
69
- <status value="requested"/>
70
- <description>
71
- <coding>
72
- <code value="new-request"/>
73
- </coding>
74
- </description>
75
- <dateTime value="2014-12-05"/>
76
- </event>
77
- <item>
78
- <code>
79
- <coding>
80
- <system value="http://lis.acmelabs.org/codes"/>
81
- <code value="400"/>
82
- <display value="Stool culture with Susceptibility"/>
83
- </coding>
84
- <text value="Stool Culture with Susceptibility Reflex"/>
85
- </code>
86
- <status value="requested"/>
87
- </item>
88
- </DiagnosticOrder>
data/lib/tests/testscripts/xml/Connectathon11/Track7-LabOrderLabReport/_reference/resources/DiagnosticReport/dr-100.xml DELETED
@@ -1,96 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <DiagnosticReport xmlns="http://hl7.org/fhir">
3
- <id value="dr-100"/>
4
- <text>
5
- <status value="generated"/>
6
- <div xmlns="http://www.w3.org/1999/xhtml">
7
- <p>
8
- <b>Generated Narrative with Details</b>
9
- </p>
10
- <p>
11
- <b>id</b>: dr-100</p>
12
- <p>
13
- <b>identifier</b>: Filler Identifier = dr-100</p>
14
- <p>
15
- <b>status</b>: final</p>
16
- <p>
17
- <b>code</b>: PT+INR
18
- <span style="background: LightGoldenRodYellow ">(Details : {http://lis.acmelabs.org/ordercodes code "100" := "100)</span>
19
- </p>
20
- <p>
21
- <b>subject</b>:
22
- <a href="Patient/patient-uslab-example1">Todd G. Lerr</a>
23
- </p>
24
- <p>
25
- <b>effective</b>: 9/25/2015</p>
26
- <p>
27
- <b>issued</b>: 9/26/2015</p>
28
- <p>
29
- <b>performer</b>:
30
- <a href="Organization/org-uslab-example3">Acme Labs</a>
31
- </p>
32
- <p>
33
- <b>request</b>:
34
- <a href="DiagnosticOrder/do-100">DiagnosticOrder/do-100</a>
35
- </p>
36
- <p>
37
- <b>specimen</b>:
38
- <a href="Specimen/spec-100">Specimen/spec-100</a>
39
- </p>
40
- <p>
41
- <b>result</b>: </p>
42
- <ul>
43
- <li>
44
- <a href="Observation/obs-100">Observation/obs-100</a>
45
- </li>
46
- <li>
47
- <a href="Observation/obs-101">Observation/obs-101</a>
48
- </li>
49
- </ul>
50
- </div>
51
- </text>
52
- <identifier>
53
- <type>
54
- <coding>
55
- <system value="http://hl7.org/fhir/identifier-type"/>
56
- <code value="FILL"/>
57
- </coding>
58
- </type>
59
- <system value="http://lis.acmelabs.org/identifiers"/>
60
- <value value="dr-100"/>
61
- </identifier>
62
- <status value="final"/>
63
- <code>
64
- <coding>
65
- <system value="http://lis.acmelabs.org/ordercodes"/>
66
- <code value="100"/>
67
- </coding>
68
- <text value="PT+INR"/>
69
- </code>
70
- <subject>
71
- <reference value="Patient/patient-uslab-example1"/>
72
- <display value="Todd G. Lerr"/>
73
- </subject>
74
- <effectiveDateTime value="2015-09-25"/>
75
- <issued value="2015-09-26T00:00:00Z"/>
76
- <performer>
77
- <reference value="Organization/org-uslab-example3"/>
78
- <display value="Acme Labs"/>
79
- </performer>
80
- <request>
81
- <reference value="DiagnosticOrder/do-100"/>
82
- <display value="DiagnosticOrder/do-100"/>
83
- </request>
84
- <specimen>
85
- <reference value="Specimen/spec-100"/>
86
- <display value="Specimen/spec-100"/>
87
- </specimen>
88
- <result>
89
- <reference value="Observation/obs-100"/>
90
- <display value="Observation/obs-100"/>
91
- </result>
92
- <result>
93
- <reference value="Observation/obs-101"/>
94
- <display value="Observation/obs-101"/>
95
- </result>
96
- </DiagnosticReport>