plan_executor 1.0.2 → 1.8.0

data/lib/tests/suites/argonaut_resprint_3_test.rb

@@ -1,309 +0,0 @@
-module Crucible
-  module Tests
-    class ArgonautResprint3Test < BaseSuite
-      attr_accessor :rc
-      attr_accessor :conformance
-      attr_accessor :searchParams
-      attr_reader   :canSearchById
-      attr_accessor :patient_id
-
-      def id
-        'ArgonautResprint3Test'
-      end
-
-      def description
-        'In Re-Sprint 3, we\'ll get up to speed on Argonaut\'s updated implementation guidance for: Medications, Immunizations, Goals, and UDI.'
-      end
-
-      def details
-        {
-          'Overview' => 'Since the Argonaut Implementation Program began in 2015, we\'ve come a long way. We\'ve gained early implementation experience working with FHIR DSTU2 and the Data Access Framework profiles — and we\'ve produced updated guidance based on this experience. We\'re running a series of "Re-Sprints" with three goals: ensure we have a chance to battle-test our latest "best practices" in time for MU3; help existing Argonaut implementers come up to speed; and provide an easy on-ramp for new Argonaut implementers.',
-          'Instructions' => 'If you\'re working on a server, please complete the "servers" tab of the Sprints Spreadsheet. You\'ll need to update the status flag to indicate whether you\'ve begun work (or completed work), so clients will know when to start testing. You\'ll also share details about how a developer can obtain OAuth client credentials (client_id for public apps, or a client_id and client_secret for confidential apps) as well as user login credentials. You might consider simply sharing a set of fixed credentials in this spreadsheet, or else directing users to a web page where they can complete self-service registration. If absolutely necessary, you can ask developers to e-mail you directly. If you\'re working on a client, please complete the "clients" tab of the Sprints Spreadsheet. You\'ll also need to update the status flag to indicate whether you\'ve begun work (or completed work).',
-          'FHIR API Calls' => 'For this sprint, EHRs should focus on the following FHIR Resources: MedicationStatement, MedicationOrder, Immunization, Goal, and Device'
-        }
-      end
-
-      def initialize(client1, client2=nil)
-        super(client1, client2)
-        @rc = FHIR::Patient
-        @tags.append('argonaut')
-        @category = {id: 'argonaut', title: 'Argonaut'}
-        @status_codes = ['active', 'unconfirmed', 'confirmed', 'inactive', 'resolved', 'refuted', 'entered-in-error']
-      end
-
-      def setup
-        if !@client.client.try(:params).nil? && @client.client.params['patient']
-          @patient_id = @client.client.params['patient']
-        end
-      end
-
-      test 'ARS301', 'Get patient by ID' do
-        metadata {
-          links "#{REST_SPEC_LINK}#read"
-          requires resource: "Patient", methods: ["read", "search"]
-          validates resource: "Patient", methods: ["read", "search"]
-        }
-
-        begin
-          options = {
-            :search => {
-              :flag => true,
-              :compartment => nil,
-              :parameters => {
-                _count: 1
-              }
-            }
-          }
-          @patient_id ||= @client.search(@rc, options).resource.entry.first.resource.xmlId
-        rescue NoMethodError
-          @patient = nil
-        end
-
-        skip unless @patient_id
-
-        reply = @client.read(FHIR::Patient, @patient_id)
-        assert_response_ok(reply)
-        assert_equal @patient_id.to_s, reply.id.to_s, 'Server returned wrong patient.'
-        @patient = reply.resource
-        assert @patient, "could not get patient by id: #{@patient_id}"
-        warning { assert_valid_resource_content_type_present(reply) }
-        warning { assert_last_modified_present(reply) }
-      end
-
-      test 'ARS302', 'GET MedicationOrder with Patient ID' do
-        metadata {
-          links "#{REST_SPEC_LINK}#search"
-          requires resource: "MedicationOrder", methods: ["read", "search"]
-          validates resource: "MedicationOrder", methods: ["read", "search"]
-        }
-
-        skip if !@patient_id
-
-        options = {
-          search: {
-            flag: false,
-            compartment: nil,
-            parameters: {
-              patient: @patient_id
-            }
-          }
-        }
-
-        reply = @client.search(FHIR::MedicationOrder, options)
-
-        assert_response_ok(reply)
-
-        valid_entries = 0
-
-        reply.resource.entry.each do |entry|
-          med = entry.resource
-          assert med.dateWritten, "MedicationOrder '#{med.xmlId}' does not have a dateWritten"
-          assert med.medicationCodeableConcept || med.medicationReference, "MedicationOrder '#{med.xmlId}' does not have an embedded Medication"
-          assert med.status && !med.status.empty?, "MedicationOrder '#{med.xmlId}' must have a non-blank status"
-          assert med.patient.reference == "Patient/#{@patient_id}", "MedicationOrder '#{med.xmlId}' patient (#{med.patient.reference}) doesn't match the specified patient (Patient/#{@patient_id}})"
-          assert med.prescriber, "MedicationOrder '#{med.xmlId}' does not have a prescriber"
-          valid_entries += 1
-        end
-
-        warning { assert valid_entries > 0, "No MedicationOrders were found for patient #{@patient_id}" }
-        skip unless valid_entries > 0
-      end
-
-      test 'ARS303', 'GET MedicationStatement with Patient ID' do
-        metadata {
-          links "#{REST_SPEC_LINK}#search"
-          requires resource: "MedicationStatement", methods: ["read", "search"]
-          validates resource: "MedicationStatement", methods: ["read", "search"]
-        }
-
-        skip if !@patient_id
-
-        options = {
-          search: {
-            flag: false,
-            compartment: nil,
-            parameters: {
-              patient: @patient_id
-            }
-          }
-        }
-
-        reply = @client.search(FHIR::MedicationStatement, options)
-
-        assert_response_ok(reply)
-
-        valid_entries = 0
-
-        reply.resource.entry.each do |entry|
-          # Note: haven't been able to find a server that supports MedicationStatement and has a patient with it.
-          med = entry.resource
-          assert med.effectiveDateTime || med.effectivePeriod, "MedicationStatement '#{med.xmlId} 'does not have an effective date or period"
-          assert med.medicationCodeableConcept || med.medicationReference, "MedicationStatement '#{med.xmlId}' does not have an embedded Medication"
-          assert med.status && !med.status.empty?, "MedicationStatement '#{med.xmlId}' must have a non-blank status"
-          assert med.patient.reference == "Patient/#{@patient_id}", "MedicationStatement '#{med.xmlId}' patient (#{med.patient.reference}) doesn't match the specified patient (Patient/#{@patient_id}})"
-          valid_entries += 1
-        end
-
-        warning { assert valid_entries > 0, "No MedicationStatements were found for patient #{@patient_id}" }
-        skip unless valid_entries > 0
-      end
-
-      test 'ARS304', 'GET Immunization with Patient ID' do
-        metadata {
-          links "#{REST_SPEC_LINK}#search"
-          requires resource: "Immunization", methods: ["read", "search"]
-          validates resource: "Immunization", methods: ["read", "search"]
-        }
-
-        skip if !@patient_id
-
-        options = {
-          search: {
-            flag: false,
-            compartment: nil,
-            parameters: {
-              patient: @patient_id
-            }
-          }
-        }
-
-        reply = @client.search(FHIR::Immunization, options)
-
-        assert_response_ok(reply)
-
-        valid_entries = 0
-
-        reply.resource.entry.each do |entry|
-          imm = entry.resource
-          assert imm.date, "Immunization '#{imm.xmlId}' does not have an administration date"
-          assert imm.status && !imm.status.empty?, "Immunization '#{imm.xmlId}' must have a non-blank status"
-          assert imm.patient.reference == "Patient/#{@patient_id}", "Immunization '#{imm.xmlId}' patient (#{imm.patient.reference}) doesn't match the specified patient (Patient/#{@patient_id})"
-          assert imm.wasNotGiven != nil, "Immunization '#{imm.xmlId}' does not have a boolean value in 'wasNotGiven'"
-          assert imm.reported != nil, "Immunization '#{imm.xmlId}' does not have a boolean value in 'reported'"
-          assert imm.vaccineCode, "Immunization '#{imm.xmlId}' does not have a code value in vaccineCode"
-          #can't check whether vaccineCode is in the DAF CVX valueSet, because that valueSet has no codes in it.
-          valid_entries += 1
-        end
-
-        warning { assert valid_entries > 0, "No Immunizations were found for patient #{@patient_id}" }
-        skip unless valid_entries > 0
-      end
-
-      test 'ARS305', 'GET Goals with Patient ID' do
-        metadata {
-          links "#{REST_SPEC_LINK}#search"
-          requires resource: "Goal", methods: ["read", "search"]
-          validates resource: "Goal", methods: ["read", "search"]
-        }
-
-        skip if !@patient_id
-
-        options = {
-          search: {
-            flag: false,
-            compartment: nil,
-            parameters: {
-              patient: @patient_id
-            }
-          }
-        }
-
-        reply = @client.search(FHIR::Goal, options)
-
-        assert_response_ok(reply)
-
-        valid_entries = 0
-
-        reply.resource.entry.each do |entry|
-          med = entry.resource
-          assert med.status && !med.status.empty?, "Goal '#{med.xmlId}' must have a non-blank status"
-          # array is composed of GoalStatus ValueSet codes: http://hl7.org/fhir/DSTU2/valueset-Goal-status.html
-          assert %w{proposed planned accepted rejected in-progress achieved sustaining on-hold cancelled}.include?(med.status), "Goal '#{med.xmlId}' must have a status from the GoalStatus Value set at http://hl7.org/fhir/DSTU2/valueset-Goal-status.html"
-          assert med.description && !med.description.empty?, "Goal '#{med.xmlId}' must have a non-blank description"
-          assert med.subject.reference == "Patient/#{@patient_id}", "Goal '#{med.xmlId}' patient (#{med.subject.reference}) doesn't match the specified patient (Patient/#{@patient_id})"
-          valid_entries += 1
-        end
-
-        warning { assert valid_entries > 0, "No Goals were found for patient #{@patient_id}" }
-        skip unless valid_entries > 0
-      end
-
-      test 'ARS306', 'GET Goals with Patient ID and Date' do
-        metadata {
-          links "#{REST_SPEC_LINK}#search"
-          requires resource: "Goal", methods: ["read", "search"]
-          validates resource: "Goal", methods: ["read", "search"]
-        }
-
-        skip if !@patient_id
-
-        options = {
-          search: {
-            flag: false,
-            compartment: nil,
-            parameters: {
-              patient: @patient_id,
-              targetdate: 'ge2000-01-01'
-            }
-          }
-        }
-
-        reply = @client.search(FHIR::Goal, options)
-
-        assert_response_ok(reply)
-
-        valid_entries = 0
-
-        reply.resource.entry.each do |entry|
-          med = entry.resource
-          assert med.status && !med.status.empty?, "Goal '#{med.xmlId}' must have a non-blank status"
-          # array is composed of GoalStatus ValueSet codes: http://hl7.org/fhir/DSTU2/valueset-Goal-status.html
-          assert %w{proposed planned accepted rejected in-progress achieved sustaining on-hold cancelled}.include?(med.status), "Goal '#{med.xmlId}' must have a status from the GoalStatus Value set at http://hl7.org/fhir/DSTU2/valueset-Goal-status.html"
-          assert med.description && !med.description.empty?, "Goal '#{med.xmlId}' must have a non-blank description"
-          assert med.subject.reference == "Patient/#{@patient_id}", "Goal '#{med.xmlId}' patient (#{med.subject.reference}) doesn't match the specified patient (Patient/#{@patient_id})"
-          valid_entries += 1
-        end
-
-        warning { assert valid_entries > 0, "No Goals were found for patient #{@patient_id} after Jan 1, 2000" }
-        skip unless valid_entries > 0
-      end
-
-      test 'ARS307', 'GET Devices with Patient ID' do
-        metadata {
-          links "#{REST_SPEC_LINK}#search"
-          requires resource: "Device", methods: ["read", "search"]
-          validates resource: "Device", methods: ["read", "search"]
-        }
-
-        skip if !@patient_id
-
-        options = {
-          search: {
-            flag: false,
-            compartment: nil,
-            parameters: {
-              patient: @patient_id
-            }
-          }
-        }
-
-        reply = @client.search(FHIR::Device, options)
-
-        assert_response_ok(reply)
-
-        valid_entries = 0
-
-        reply.resource.entry.each do |entry|
-          med = entry.resource
-          assert med.fhirType && !med.fhirType.coding.empty?, "Device '#{med.xmlId}' must have a non-blank status"
-          assert med.udi && !med.udi.empty?, "Device '#{med.xmlId}' must have a non-blank UDI string"
-          assert med.patient.reference == "Patient/#{@patient_id}", "Device '#{med.xmlId}' patient (#{med.patient.reference}) doesn't match the specified patient (Patient/#{@patient_id})"
-          valid_entries += 1
-        end
-
-        warning { assert valid_entries > 0, "No Devices were found for patient #{@patient_id}" }
-        skip unless valid_entries > 0
-      end
-    end
-  end
-end

data/lib/tests/suites/argonaut_sprint_1_test.rb

@@ -1,187 +0,0 @@
-module Crucible
-  module Tests
-    class ArgonautSprint1Test < BaseSuite
-      attr_accessor :rc
-      attr_accessor :conformance
-      attr_accessor :searchParams
-      attr_reader   :canSearchById
-      attr_accessor :patient_id
-
-      def id
-        'ArgonautSprint1Test'
-      end
-
-      def description
-        'Argonaut Sprint 1 tests for testing Argonauts Sprint 1 goals: read patient by ID, search for patients by various demographics.'
-      end
-
-      def details
-        {
-          'Overview' => 'Argonaut Sprint 1 tests for testing Argonauts Sprint 1 goals: read patient by ID, search for patients by various demographics.',
-          'Instructions' => 'Servers should provide the following information for the sprint: Organization name and contact, FHIR endpoint URL, List of FHIR Patient IDs (that is, Patient.id, not Patient.identifier), Authorization token(s), which are simple fixed values for now (Note: some servers, including Argonaut\'s reference server, may need to issue different tokens to different clients for policy reasons)',
-          'FHIR API Calls' => 'We\'ll focus on the basics, beginning with two FHIR API calls that every participating server should expose, and every participating client should invoke: GET /Patient/{id} Retrieve a patient\'s basic demographics and identifiers, given a unique patient id. Think of this as the "Hello world" of FHIR. And cross-patient demographics search, using a single FHIR API call: GET /Patient?[parameters] Find patients based on a variety of demographic criteria. The following search parameters must be supported at a minimum: (name, family, given, identifier, gender, birthdate)',
-          'Authorization' => 'The first Argonaut sprint will focus on getting data services up and running even before a complete authorization flow is implemented. This way we can ensure that all participating servers have correctly exposed FHIR API endpoints before we lock those endpoints down with a full OAuth approval process. So for this first sprint, each server will publish its FHIR endpoint URL along with an access token that clients can include in an HTTP Authorization header with each API call',
-        }
-      end
-
-      def initialize(client1, client2=nil)
-        super(client1, client2)
-        @tags.append('argonautp1')
-        @category = {id: 'argonautp1', title: 'Argonaut Phase 1'}
-      end
-
-      def setup
-        @searchParams = [:name, :family, :given, :identifier, :gender, :birthdate]
-        @rc = FHIR::Patient
-
-        if !@client.client.try(:params).nil? && @client.client.params["patient"]
-          @patient_id = @client.client.params["patient"]
-        end
-      end
-
-      def get_patient_by_param(params = {}, flag = true)
-        assert !params.empty?, "No params for patient"
-        options = {
-          :search => {
-            :flag => flag,
-            :compartment => nil,
-            :parameters => params
-          }
-        }
-        reply = @client.search(@rc, options)
-        assert_response_ok(reply)
-        assert_bundle_response(reply)
-        assert reply.resource.get_by_id(@patient_id).equals?(@patient, ['_id', "text", "meta", "lastUpdated"]), 'Server returned wrong patient.'
-      end
-
-      def define_metadata(method)
-        links "#{REST_SPEC_LINK}##{method}"
-        links "#{BASE_SPEC_LINK}/#{@rc.name.demodulize.downcase}.html"
-        validates resource: @rc.name.demodulize, methods: [method]
-      end
-
-      # [SprinklerTest("R001", "Result headers on normal read")]
-      test 'AS001', 'Get patient by ID' do
-        metadata {
-          links "#{REST_SPEC_LINK}#read"
-          requires resource: "Patient", methods: ["read", "search"]
-          validates resource: "Patient", methods: ["read", "search"]
-        }
-
-        begin
-          options = {
-            :search => {
-              :flag => true,
-              :compartment => nil,
-              :parameters => {
-                _count: 1
-              }
-            }
-          }
-          @patient_id ||= @client.search(@rc, options).resource.entry.first.resource.xmlId
-        rescue NoMethodError
-          @patient = nil
-        end
-
-        skip if !@patient_id
-
-        reply = @client.read(FHIR::Patient, @patient_id)
-        assert_response_ok(reply)
-        assert_equal @patient_id, reply.id, 'Server returned wrong patient.'
-        @patient = reply.resource
-        assert @patient, "could not get patient by id: #{@patient_id}"
-        warning { assert_valid_resource_content_type_present(reply) }
-        warning { assert_last_modified_present(reply) }
-      end
-
-      test 'AS002', 'Search by identifier' do
-        metadata {
-          define_metadata('search')
-        }
-        skip if !@patient
-        get_patient_by_param(:identifier => @patient[:identifier].first.try(:value))
-      end
-
-      test 'AS003', 'Identifier without search keyword' do
-        metadata {
-          define_metadata('search')
-        }
-        skip if !@patient
-        get_patient_by_param({ :identifier => @patient[:identifier].first.try(:value) }, false)
-      end
-
-      test 'AS004', 'Search by Family & Given' do
-        metadata {
-          define_metadata('search')
-        }
-        skip if !@patient
-        family = @patient[:name].first.try(:family).try(:first)
-        given = @patient[:name].first.try(:given).try(:first)
-        assert family, "Patient family name not returned"
-        assert given, "Patient given name not returned"
-        get_patient_by_param(family: family, given: given)
-      end
-
-      test 'AS005', 'Family & Given without search keyword' do
-        metadata {
-          define_metadata('search')
-        }
-        skip if !@patient
-        family = @patient[:name].first.try(:family).try(:first)
-        given = @patient[:name].first.try(:given).try(:first)
-        assert family, "Patient family name not provided"
-        assert given, "Patient given name not provided"
-        get_patient_by_param({ family: family, given: given }, false)
-      end
-
-      test 'AS006', 'Search by name and gender' do
-        metadata {
-          define_metadata('search')
-        }
-        skip if !@patient
-        name = @patient[:name].first.try(:family).try(:first)
-        gender = @patient[:gender]
-        assert name, "Patient name not provided"
-        assert gender, "Patient gender not provided"
-        get_patient_by_param(name: name, gender: gender)
-      end
-
-      test 'AS007', 'Name and gender without search keyword' do
-        metadata {
-          define_metadata('search')
-        }
-        skip if !@patient
-        name = @patient[:name].first.try(:family).try(:first)
-        gender = @patient[:gender]
-        assert name, "Patient name not provided"
-        assert gender, "Patient gender not provided"
-        get_patient_by_param(name: name, gender: gender)
-      end
-
-      test 'AS008', 'Search by Birthdate' do
-        metadata {
-          define_metadata('search')
-        }
-        skip if !@patient
-        birthdate = @patient[:birthDate]
-        gender = @patient[:gender]
-        assert birthdate, "Patient birthdate not provided"
-        assert gender, "Patient gender not provided"
-        get_patient_by_param(birthdate: birthdate, gender: gender)
-      end
-
-      test 'AS009', 'Birthdate without search keyword' do
-        metadata {
-          define_metadata('search')
-        }
-        skip if !@patient
-        birthdate = @patient[:birthDate]
-        gender = @patient[:gender]
-        assert birthdate, "Patient birthdate not provided"
-        assert gender, "Patient gender not provided"
-        get_patient_by_param({ birthdate: birthdate, gender: gender }, false)
-      end
-
-    end
-  end
-end