solarwindpy 0.0.1.dev0__py3-none-any.whl โ†’ 0.1.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of solarwindpy might be problematic. Click here for more details.

Files changed (412) hide show
  1. plans/.velocity/metrics.json +96 -0
  2. plans/0-overview-template.md +268 -0
  3. plans/N-phase-template.md +106 -0
  4. plans/PLAN_AUDIT_SUMMARY.md +173 -0
  5. plans/TEMPLATE-USAGE-GUIDE.md +198 -0
  6. plans/__init__.py +1 -0
  7. plans/abandoned/compaction-agent-system/0-Overview.md +123 -0
  8. plans/abandoned/compaction-agent-system/agents-index-update-plan.md +109 -0
  9. plans/abandoned/compaction-agent-system/compacted_state.md +85 -0
  10. plans/abandoned/compaction-agent-system/implementation-plan.md +107 -0
  11. plans/abandoned/compaction-agent-system/system-validation-report.md +159 -0
  12. plans/abandoned/compaction-agent-system/usage-guide.md +210 -0
  13. plans/abandoned/hook-system-enhancement/0-Overview.md +214 -0
  14. plans/abandoned/hook-system-enhancement/1-Phase1-Core-Infrastructure.md +313 -0
  15. plans/abandoned/hook-system-enhancement/2-Phase2-Intelligent-Testing.md +385 -0
  16. plans/abandoned/hook-system-enhancement/3-Phase3-Physics-Validation.md +444 -0
  17. plans/abandoned/hook-system-enhancement/4-Phase4-Performance-Monitoring.md +458 -0
  18. plans/abandoned/hook-system-enhancement/5-Phase5-Developer-Experience.md +532 -0
  19. plans/abandoned/hook-system-enhancement/6-Implementation-Timeline.md +274 -0
  20. plans/abandoned/hook-system-enhancement/7-Risk-Management.md +376 -0
  21. plans/abandoned/hook-system-enhancement/8-Testing-Strategy.md +579 -0
  22. plans/abandoned/readthedocs-automation/0-Overview.md +247 -0
  23. plans/abandoned/readthedocs-automation/1-Emergency-Documentation-Fixes.md +270 -0
  24. plans/abandoned/readthedocs-automation/2-Template-System-Enhancement.md +811 -0
  25. plans/abandoned/readthedocs-automation/3-Quality-Audit-ReadTheDocs-Integration.md +844 -0
  26. plans/abandoned/readthedocs-automation/4-Plan-Consolidation-Cleanup.md +632 -0
  27. plans/abandoned/readthedocs-automation/9-Closeout.md +207 -0
  28. plans/abandoned/readthedocs-automation/ABANDONMENT_REASON.md +72 -0
  29. plans/cicd-architecture-redesign/0-Overview.md +193 -0
  30. plans/cicd-architecture-redesign/1-Workflow-Creation.md +103 -0
  31. plans/cicd-architecture-redesign/2-Version-Detection.md +123 -0
  32. plans/cicd-architecture-redesign/3-Deployment-Gates.md +169 -0
  33. plans/cicd-architecture-redesign/4-RC-Testing.md +194 -0
  34. plans/cicd-architecture-redesign/5-TestPyPI-Validation.md +264 -0
  35. plans/cicd-architecture-redesign/6-Production-Release.md +263 -0
  36. plans/cicd-architecture-redesign/7-Cleanup.md +243 -0
  37. plans/cicd-architecture-redesign/8-Documentation.md +285 -0
  38. plans/cicd-architecture-redesign/Closeout.md +225 -0
  39. plans/closeout-template.md +259 -0
  40. plans/completed/circular-import-audit/0-Overview.md +152 -0
  41. plans/completed/circular-import-audit/1-Static-Dependency-Analysis.md +62 -0
  42. plans/completed/circular-import-audit/2-Dynamic-Import-Testing.md +56 -0
  43. plans/completed/circular-import-audit/3-Performance-Impact-Assessment.md +56 -0
  44. plans/completed/circular-import-audit/4-Issue-Remediation.md +78 -0
  45. plans/completed/circular-import-audit/5-Preventive-Infrastructure.md +89 -0
  46. plans/completed/claude-settings-ecosystem-alignment/0-Overview.md +162 -0
  47. plans/completed/claude-settings-ecosystem-alignment/1-Security-Foundation.md +148 -0
  48. plans/completed/claude-settings-ecosystem-alignment/2-Hook-Integration.md +158 -0
  49. plans/completed/claude-settings-ecosystem-alignment/3-Agent-System-Integration.md +177 -0
  50. plans/completed/claude-settings-ecosystem-alignment/4-Enhanced-Workflow-Automation.md +159 -0
  51. plans/completed/claude-settings-ecosystem-alignment/5-Validation-Monitoring.md +181 -0
  52. plans/completed/claude-settings-ecosystem-alignment/compacted_session_state.md +290 -0
  53. plans/completed/combined_plan_with_checklist_documentation/1-Overview-and-Goals.md +51 -0
  54. plans/completed/combined_plan_with_checklist_documentation/2-Toolchain-and-Hosting.md +69 -0
  55. plans/completed/combined_plan_with_checklist_documentation/3-Repository-Structure.md +61 -0
  56. plans/completed/combined_plan_with_checklist_documentation/4-Configuration-and-Standards.md +70 -0
  57. plans/completed/combined_plan_with_checklist_documentation/5-Documentation-Content.md +62 -0
  58. plans/completed/combined_plan_with_checklist_documentation/6-CI-CD-and-Validation.md +58 -0
  59. plans/completed/combined_plan_with_checklist_documentation/7-Maintenance.md +55 -0
  60. plans/completed/combined_test_plan_with_checklist_fitfunctions/0-Overview.md +135 -0
  61. plans/completed/combined_test_plan_with_checklist_fitfunctions/1-Common-fixtures.md +59 -0
  62. plans/completed/combined_test_plan_with_checklist_fitfunctions/10-power_laws.md +56 -0
  63. plans/completed/combined_test_plan_with_checklist_fitfunctions/2-core.py-FitFunction.md +118 -0
  64. plans/completed/combined_test_plan_with_checklist_fitfunctions/3-gaussians.py-Gaussian-GaussianNormalized-GaussianLn.md +69 -0
  65. plans/completed/combined_test_plan_with_checklist_fitfunctions/4-trend_fits.py-TrendFit.md +99 -0
  66. plans/completed/combined_test_plan_with_checklist_fitfunctions/5-plots.py-FFPlot.md +98 -0
  67. plans/completed/combined_test_plan_with_checklist_fitfunctions/6-tex_info.py-TeXinfo.md +79 -0
  68. plans/completed/combined_test_plan_with_checklist_fitfunctions/7-Justification.md +49 -0
  69. plans/completed/combined_test_plan_with_checklist_fitfunctions/8-exponentials.md +64 -0
  70. plans/completed/combined_test_plan_with_checklist_fitfunctions/9-lines.md +58 -0
  71. plans/completed/combined_test_plan_with_checklist_plotting/0-Overview.md +142 -0
  72. plans/completed/combined_test_plan_with_checklist_plotting/1-base.py.md +90 -0
  73. plans/completed/combined_test_plan_with_checklist_plotting/10-labels-special.py.md +102 -0
  74. plans/completed/combined_test_plan_with_checklist_plotting/11-labels-chemistry.py.md +212 -0
  75. plans/completed/combined_test_plan_with_checklist_plotting/12-labels-composition.py.md +242 -0
  76. plans/completed/combined_test_plan_with_checklist_plotting/13-labels-datetime.py.md +247 -0
  77. plans/completed/combined_test_plan_with_checklist_plotting/14-labels-elemental_abundance.py.md +274 -0
  78. plans/completed/combined_test_plan_with_checklist_plotting/15-visual-validation.md +256 -0
  79. plans/completed/combined_test_plan_with_checklist_plotting/16-integration-testing.md +266 -0
  80. plans/completed/combined_test_plan_with_checklist_plotting/17-performance-benchmarks.md +267 -0
  81. plans/completed/combined_test_plan_with_checklist_plotting/18-Fixtures-and-Utilities.md +86 -0
  82. plans/completed/combined_test_plan_with_checklist_plotting/2-agg_plot.py.md +90 -0
  83. plans/completed/combined_test_plan_with_checklist_plotting/3-histograms.py.md +201 -0
  84. plans/completed/combined_test_plan_with_checklist_plotting/4-scatter.py.md +167 -0
  85. plans/completed/combined_test_plan_with_checklist_plotting/5-spiral.py.md +216 -0
  86. plans/completed/combined_test_plan_with_checklist_plotting/6-orbits.py.md +108 -0
  87. plans/completed/combined_test_plan_with_checklist_plotting/7-tools.py.md +86 -0
  88. plans/completed/combined_test_plan_with_checklist_plotting/8-select_data_from_figure.py.md +97 -0
  89. plans/completed/combined_test_plan_with_checklist_plotting/9-labels-base.py.md +88 -0
  90. plans/completed/combined_test_plan_with_checklist_solar_activity/.gitkeep +0 -0
  91. plans/completed/combined_test_plan_with_checklist_solar_activity/0-Overview.md +170 -0
  92. plans/completed/combined_test_plan_with_checklist_solar_activity/1-Package-Entry-Point-__init__.py.md +121 -0
  93. plans/completed/combined_test_plan_with_checklist_solar_activity/2-Core-Base-Classes-base.py.md +142 -0
  94. plans/completed/combined_test_plan_with_checklist_solar_activity/3-Plotting-Helpers-plots.py.md +123 -0
  95. plans/completed/combined_test_plan_with_checklist_solar_activity/4-LISIRD-Sub-package.md +119 -0
  96. plans/completed/combined_test_plan_with_checklist_solar_activity/5-Extrema-Calculator.md +103 -0
  97. plans/completed/combined_test_plan_with_checklist_solar_activity/6-Sunspot-Number-Sub-package.md +163 -0
  98. plans/completed/combined_test_plan_with_checklist_solar_activity/7-Sunspot-Number-Init.py.md +217 -0
  99. plans/completed/combined_test_plan_with_checklist_solar_activity/compacted_state.md +52 -0
  100. plans/completed/compaction-agent-modernization/0-Overview.md +156 -0
  101. plans/completed/compaction-agent-modernization/1-Architecture-Audit-Gap-Analysis.md +132 -0
  102. plans/completed/compaction-agent-modernization/2-Token-Baseline-Recalibration.md +153 -0
  103. plans/completed/compaction-agent-modernization/3-Agent-Reference-Updates.md +184 -0
  104. plans/completed/compaction-agent-modernization/4-Compression-Algorithm-Modernization.md +238 -0
  105. plans/completed/compaction-agent-modernization/5-Workflow-Integration-Streamlining.md +252 -0
  106. plans/completed/compaction-agent-modernization/6-Template-Structure-Optimization.md +240 -0
  107. plans/completed/compaction-agent-modernization/7-Integration-Testing-Validation.md +292 -0
  108. plans/completed/compaction-hook-enhancement/0-Overview.md +150 -0
  109. plans/completed/compaction-hook-enhancement/1-Token-Estimation-Enhancement.md +179 -0
  110. plans/completed/compaction-hook-enhancement/2-Compression-Intelligence.md +294 -0
  111. plans/completed/compaction-hook-enhancement/3-Git-Integration-Metadata.md +310 -0
  112. plans/completed/compaction-hook-enhancement/4-Session-Continuity-Features.md +358 -0
  113. plans/completed/compaction-hook-enhancement/5-Testing-Strategy.md +404 -0
  114. plans/completed/compaction-hook-enhancement/6-Integration-Roadmap.md +319 -0
  115. plans/completed/compaction-hook-enhancement/compacted_state.md +142 -0
  116. plans/completed/docstring-audit-enhancement/0-Overview.md +274 -0
  117. plans/completed/docstring-audit-enhancement/1-Infrastructure-Setup-and-Validation-Tools.md +206 -0
  118. plans/completed/docstring-audit-enhancement/2-Core-Physics-Modules-Enhancement.md +237 -0
  119. plans/completed/docstring-audit-enhancement/3-Fitfunctions-Mathematical-Modules-Enhancement.md +188 -0
  120. plans/completed/docstring-audit-enhancement/4-Plotting-Visualization-Modules-Enhancement.md +243 -0
  121. plans/completed/docstring-audit-enhancement/5-Specialized-Modules-Enhancement.md +216 -0
  122. plans/completed/docstring-audit-enhancement/6-Validation-and-Integration.md +216 -0
  123. plans/completed/fitfunctions-testing-implementation/0-Overview.md +130 -0
  124. plans/completed/fitfunctions-testing-implementation/1-Test-Infrastructure-Setup.md +79 -0
  125. plans/completed/fitfunctions-testing-implementation/2-Common-Fixtures-Test-Utilities.md +104 -0
  126. plans/completed/fitfunctions-testing-implementation/3-Core-FitFunction-Testing.md +168 -0
  127. plans/completed/fitfunctions-testing-implementation/4-Specialized-Function-Classes.md +210 -0
  128. plans/completed/fitfunctions-testing-implementation/5-Advanced-Classes-Testing.md +214 -0
  129. plans/completed/fitfunctions-testing-implementation/6-Plotting-Integration-Testing.md +231 -0
  130. plans/completed/fitfunctions-testing-implementation/7-Extended-Coverage-BONUS.md +184 -0
  131. plans/completed/numpy-docstring-conversion-plan/numpy-docstring-conversion-plan.md +118 -0
  132. plans/completed/pr-review-remediation/0-Overview.md +138 -0
  133. plans/completed/pr-review-remediation/1-Critical-Safety-Improvements.md +179 -0
  134. plans/completed/pr-review-remediation/2-Smart-Timeouts-Validation.md +399 -0
  135. plans/completed/pr-review-remediation/3-Enhanced-GitHub-Integration.md +258 -0
  136. plans/completed/pr-review-remediation/compacted_state.md +66 -0
  137. plans/completed/python-310-migration/0-Overview.md +390 -0
  138. plans/completed/python-310-migration/1-Planning-Setup.md +164 -0
  139. plans/completed/python-310-migration/2-Implementation.md +256 -0
  140. plans/completed/python-310-migration/3-Testing-Validation.md +335 -0
  141. plans/completed/python-310-migration/4-Documentation-Release.md +274 -0
  142. plans/completed/python-310-migration/5-Closeout.md +252 -0
  143. plans/completed/requirements-management-consolidation/0-Overview.md +118 -0
  144. plans/completed/requirements-management-consolidation/1-Documentation-Validation-Environment-Setup.md +116 -0
  145. plans/completed/requirements-management-consolidation/2-Requirements-Consolidation.md +161 -0
  146. plans/completed/requirements-management-consolidation/3-Workflow-Automation-Final-Integration.md +196 -0
  147. plans/completed/single-ecosystem-plan-implementation/0-Overview.md +83 -0
  148. plans/completed/single-ecosystem-plan-implementation/1-Plan-Preservation-Session-Management.md +38 -0
  149. plans/completed/single-ecosystem-plan-implementation/2-File-Structure-Optimization.md +43 -0
  150. plans/completed/single-ecosystem-plan-implementation/3-Plan-Migration-Archive-Setup.md +82 -0
  151. plans/completed/single-ecosystem-plan-implementation/4-Agent-System-Transformation.md +108 -0
  152. plans/completed/single-ecosystem-plan-implementation/5-Template-System-Enhancement.md +131 -0
  153. plans/completed/single-ecosystem-plan-implementation/6-Final-Validation-Testing.md +120 -0
  154. plans/completed/test-directory-consolidation/0-Overview.md +51 -0
  155. plans/completed/test-directory-consolidation/1-Structure-Preparation.md +82 -0
  156. plans/completed/test-directory-consolidation/2-File-Migration.md +100 -0
  157. plans/completed/test-directory-consolidation/3-Import-Transformation.md +117 -0
  158. plans/completed/test-directory-consolidation/4-Configuration-Consolidation.md +140 -0
  159. plans/completed/test-directory-consolidation/5-Validation.md +152 -0
  160. plans/completed/test-directory-consolidation/6-Cleanup.md +156 -0
  161. plans/completed/test-planning-agents-architecture/0-Overview.md +79 -0
  162. plans/completed/test-planning-agents-architecture/1-Branch-Isolation-Testing.md +49 -0
  163. plans/completed/test-planning-agents-architecture/2-Cross-Branch-Coordination.md +51 -0
  164. plans/completed/test-planning-agents-architecture/3-Merge-Workflow-Testing.md +48 -0
  165. plans/deployment-semver-pypi-rtd/0-Overview.md +463 -0
  166. plans/deployment-semver-pypi-rtd/1-Semantic-Versioning-Foundation.md +136 -0
  167. plans/deployment-semver-pypi-rtd/2-PyPI-Deployment-Infrastructure.md +168 -0
  168. plans/deployment-semver-pypi-rtd/3-Release-Automation.md +214 -0
  169. plans/deployment-semver-pypi-rtd/4-Plan-Closeout.md +543 -0
  170. plans/deployment-semver-pypi-rtd/compacted_session_state.md +172 -0
  171. plans/deployment-semver-pypi-rtd/compacted_state.md +131 -0
  172. plans/documentation-code-audit/0-Overview.md +393 -0
  173. plans/documentation-code-audit/1-Discovery-Inventory.md +183 -0
  174. plans/documentation-code-audit/2-Execution-Environment-Setup.md +263 -0
  175. plans/documentation-code-audit/3-Systematic-Validation.md +322 -0
  176. plans/documentation-code-audit/4-Code-Example-Remediation.md +358 -0
  177. plans/documentation-code-audit/5-Physics-MultiIndex-Compliance.md +464 -0
  178. plans/documentation-code-audit/6-Doctest-Integration.md +523 -0
  179. plans/documentation-code-audit/7-Reporting-Documentation.md +498 -0
  180. plans/documentation-code-audit/8-Closeout.md +456 -0
  181. plans/documentation-rebuild-session/compacted_state.md +109 -0
  182. plans/documentation-rendering-fixes/0-Overview.md +104 -0
  183. plans/documentation-rendering-fixes/1-Sphinx-Build-Diagnostics-Warning-Audit.md +101 -0
  184. plans/documentation-rendering-fixes/2-Configuration-Infrastructure-Fixes.md +113 -0
  185. plans/documentation-rendering-fixes/3-Docstring-Syntax-Audit-Repair.md +131 -0
  186. plans/documentation-rendering-fixes/4-HTML-Page-Rendering-Verification.md +113 -0
  187. plans/documentation-rendering-fixes/5-Advanced-Documentation-Quality-Assurance.md +119 -0
  188. plans/documentation-rendering-fixes/6-Documentation-Build-Optimization-Testing.md +129 -0
  189. plans/documentation-rendering-fixes/compacted_state.md +132 -0
  190. plans/documentation-template-fix/0-Overview.md +197 -0
  191. plans/documentation-template-fix/1-Template-System-Analysis.md +269 -0
  192. plans/documentation-template-fix/2-Template-Modification.md +609 -0
  193. plans/documentation-template-fix/3-Build-System-Integration.md +766 -0
  194. plans/documentation-template-fix/4-Testing-Validation.md +1399 -0
  195. plans/documentation-template-fix/5-Documentation-Training.md +602 -0
  196. plans/documentation-workflow-fix/0-Overview.md +222 -0
  197. plans/documentation-workflow-fix/1-Immediate-Fixes.md +238 -0
  198. plans/documentation-workflow-fix/2-Configuration-Setup.md +298 -0
  199. plans/documentation-workflow-fix/3-Pre-commit-Integration.md +382 -0
  200. plans/documentation-workflow-fix/4-Workflow-Improvements.md +446 -0
  201. plans/documentation-workflow-fix/5-Documentation-and-Training.md +527 -0
  202. plans/duplicate-object-warnings-fix-plan.md +130 -0
  203. plans/github-issues-migration/0-Overview.md +510 -0
  204. plans/github-issues-migration/1-Foundation-Label-System.md +180 -0
  205. plans/github-issues-migration/2-Migration-Tool-Rewrite.md +235 -0
  206. plans/github-issues-migration/3-CLI-Integration-Automation.md +169 -0
  207. plans/github-issues-migration/4-Validated-Migration.md +252 -0
  208. plans/github-issues-migration/5-Documentation-Training.md +171 -0
  209. plans/github-issues-migration/6-Closeout.md +179 -0
  210. plans/github-workflows-repair/repair-plan.md +299 -0
  211. plans/issues_from_plans.py +342 -0
  212. plans/pr-270-doc-validation-fixes/0-Overview.md +354 -0
  213. plans/pr-270-doc-validation-fixes/1-Critical-PR-Fixes.md +117 -0
  214. plans/pr-270-doc-validation-fixes/2-Framework-Right-Sizing.md +129 -0
  215. plans/pr-270-doc-validation-fixes/3-Sustainable-Documentation.md +126 -0
  216. plans/pr-270-doc-validation-fixes/4-Closeout-Migration.md +143 -0
  217. plans/pr-270-doc-validation-fixes/PLAN_COMPLETED.md +149 -0
  218. plans/python-310-migration/0-Overview.md +390 -0
  219. plans/python-310-migration/1-Planning-Setup.md +164 -0
  220. plans/python-310-migration/2-Implementation.md +256 -0
  221. plans/python-310-migration/3-Testing-Validation.md +335 -0
  222. plans/python-310-migration/4-Documentation-Release.md +274 -0
  223. plans/python-310-migration/5-Closeout.md +252 -0
  224. plans/readthedocs-simplified/0-Overview.md +243 -0
  225. plans/readthedocs-simplified/1-Immediate-Fixes.md +216 -0
  226. plans/readthedocs-simplified/2-Template-Simplification.md +278 -0
  227. plans/readthedocs-simplified/3-ReadTheDocs-Setup.md +298 -0
  228. plans/readthedocs-simplified/4-Testing-Validation.md +328 -0
  229. plans/readthedocs-simplified/5-Closeout.md +231 -0
  230. plans/readthedocs-simplified/compacted_state.md +127 -0
  231. plans/session-compaction-2025-08-12/compacted_state.md +114 -0
  232. plans/session-compaction-2025-08-13/compacted_state.md +145 -0
  233. plans/session-continuity-protocol/0-Overview.md +35 -0
  234. plans/session-continuity-protocol/1-Core-Principles-Framework.md +40 -0
  235. plans/session-continuity-protocol/2-Pre-Session-Validation-System.md +79 -0
  236. plans/session-continuity-protocol/3-Context-Switching-Prevention.md +87 -0
  237. plans/session-continuity-protocol/4-Progress-Tracking-Recovery.md +100 -0
  238. plans/sphinx-warnings-analysis.md +222 -0
  239. plans/systemprompt-optimization/0-Overview.md +447 -0
  240. plans/systemprompt-optimization/1-Deploy-SystemPrompt.md +114 -0
  241. plans/systemprompt-optimization/2-Documentation-Alignment.md +198 -0
  242. plans/systemprompt-optimization/3-Monitoring-Infrastructure.md +396 -0
  243. plans/systemprompt-optimization/4-Implementation-Script.md +450 -0
  244. plans/systemprompt-optimization/9-Closeout.md +165 -0
  245. plans/systemprompt-optimization/compacted_state.md +143 -0
  246. plans/template-value-propositions/0-Overview.md +357 -0
  247. plans/template-value-propositions/1-Value-Proposition-Framework-Design.md +144 -0
  248. plans/template-value-propositions/2-Plan-Template-Enhancement.md +178 -0
  249. plans/template-value-propositions/3-Value-Generator-Hook-Implementation.md +291 -0
  250. plans/template-value-propositions/4-Value-Validator-Hook-Implementation.md +274 -0
  251. plans/template-value-propositions/5-Documentation-Agent-Updates.md +219 -0
  252. plans/template-value-propositions/6-Integration-Testing-Validation.md +247 -0
  253. plans/tests-audit/0-Overview.md +410 -0
  254. plans/tests-audit/1-Discovery-Inventory.md +170 -0
  255. plans/tests-audit/2-Physics-Validation-Audit.md +195 -0
  256. plans/tests-audit/3-Architecture-Compliance.md +195 -0
  257. plans/tests-audit/4-Numerical-Stability-Analysis.md +203 -0
  258. plans/tests-audit/5-Documentation-Enhancement.md +220 -0
  259. plans/tests-audit/6-Audit-Deliverables.md +220 -0
  260. plans/tests-audit/7-Closeout.md +252 -0
  261. plans/tests-audit/artifacts/ARCHITECTURE_COMPLIANCE_REPORT.md +315 -0
  262. plans/tests-audit/artifacts/ARCHITECTURE_RECOMMENDATIONS.md +943 -0
  263. plans/tests-audit/artifacts/COMPREHENSIVE_AUDIT_REPORT.md +356 -0
  264. plans/tests-audit/artifacts/CONTRIBUTING_ENHANCED_TEMPLATE.md +419 -0
  265. plans/tests-audit/artifacts/COVERAGE_GAP_ANALYSIS.md +152 -0
  266. plans/tests-audit/artifacts/DOCUMENTATION_ENHANCEMENT_REPORT.md +502 -0
  267. plans/tests-audit/artifacts/EXECUTIVE_AUDIT_SUMMARY.md +129 -0
  268. plans/tests-audit/artifacts/IMPLEMENTATION_ROADMAP.md +647 -0
  269. plans/tests-audit/artifacts/NUMERICAL_RECOMMENDATIONS.md +739 -0
  270. plans/tests-audit/artifacts/NUMERICAL_STABILITY_GUIDE_TEMPLATE.rst +451 -0
  271. plans/tests-audit/artifacts/NUMERICAL_STABILITY_REPORT.md +301 -0
  272. plans/tests-audit/artifacts/PHASE_3_SUMMARY.md +280 -0
  273. plans/tests-audit/artifacts/PHASE_4_SUMMARY.md +229 -0
  274. plans/tests-audit/artifacts/PHASE_5_SUMMARY.md +292 -0
  275. plans/tests-audit/artifacts/PHASE_6_CLOSEOUT.md +278 -0
  276. plans/tests-audit/artifacts/PHYSICS_GUIDE_TEMPLATE.rst +268 -0
  277. plans/tests-audit/artifacts/PHYSICS_VALIDATION_REPORT.md +235 -0
  278. plans/tests-audit/artifacts/TECHNICAL_DELIVERABLES_PACKAGE.md +2502 -0
  279. plans/tests-audit/artifacts/TEST_INVENTORY.csv +1204 -0
  280. plans/tests-audit/artifacts/TEST_INVENTORY.md +135 -0
  281. plans/tests-audit/artifacts/test_discovery_analysis.py +231 -0
  282. plans/tests-audit/artifacts/test_parser.py +395 -0
  283. solarwindpy/README.md +3 -0
  284. solarwindpy/Untitled.ipynb +54 -0
  285. solarwindpy/__init__.py +74 -0
  286. solarwindpy/core/__init__.py +23 -0
  287. solarwindpy/core/alfvenic_turbulence.py +804 -0
  288. solarwindpy/core/base.py +267 -0
  289. solarwindpy/core/ions.py +309 -0
  290. solarwindpy/core/plasma.py +2133 -0
  291. solarwindpy/core/spacecraft.py +256 -0
  292. solarwindpy/core/tensor.py +90 -0
  293. solarwindpy/core/units_constants.py +199 -0
  294. solarwindpy/core/vector.py +328 -0
  295. solarwindpy/fitfunctions/__init__.py +20 -0
  296. solarwindpy/fitfunctions/core.py +734 -0
  297. solarwindpy/fitfunctions/exponentials.py +188 -0
  298. solarwindpy/fitfunctions/gaussians.py +264 -0
  299. solarwindpy/fitfunctions/lines.py +116 -0
  300. solarwindpy/fitfunctions/moyal.py +71 -0
  301. solarwindpy/fitfunctions/plots.py +751 -0
  302. solarwindpy/fitfunctions/power_laws.py +209 -0
  303. solarwindpy/fitfunctions/tex_info.py +568 -0
  304. solarwindpy/fitfunctions/trend_fits.py +482 -0
  305. solarwindpy/instabilities/__init__.py +16 -0
  306. solarwindpy/instabilities/beta_ani.py +82 -0
  307. solarwindpy/instabilities/verscharen2016.py +631 -0
  308. solarwindpy/plotting/__init__.py +33 -0
  309. solarwindpy/plotting/agg_plot.py +489 -0
  310. solarwindpy/plotting/base.py +465 -0
  311. solarwindpy/plotting/hist1d.py +405 -0
  312. solarwindpy/plotting/hist2d.py +1035 -0
  313. solarwindpy/plotting/histograms.py +1845 -0
  314. solarwindpy/plotting/labels/__init__.py +104 -0
  315. solarwindpy/plotting/labels/base.py +686 -0
  316. solarwindpy/plotting/labels/chemistry.py +19 -0
  317. solarwindpy/plotting/labels/composition.py +100 -0
  318. solarwindpy/plotting/labels/datetime.py +235 -0
  319. solarwindpy/plotting/labels/elemental_abundance.py +73 -0
  320. solarwindpy/plotting/labels/special.py +794 -0
  321. solarwindpy/plotting/orbits.py +515 -0
  322. solarwindpy/plotting/scatter.py +99 -0
  323. solarwindpy/plotting/select_data_from_figure.py +329 -0
  324. solarwindpy/plotting/spiral.py +980 -0
  325. solarwindpy/plotting/tools.py +434 -0
  326. solarwindpy/scripts/__init__.py +1 -0
  327. solarwindpy/scripts/logs/.gitignore +1 -0
  328. solarwindpy/solar_activity/__init__.py +53 -0
  329. solarwindpy/solar_activity/base.py +605 -0
  330. solarwindpy/solar_activity/lisird/__init__.py +3 -0
  331. solarwindpy/solar_activity/lisird/extrema_calculator.py +394 -0
  332. solarwindpy/solar_activity/lisird/lisird.py +319 -0
  333. solarwindpy/solar_activity/plots.py +116 -0
  334. solarwindpy/solar_activity/sunspot_number/.DS_Store +0 -0
  335. solarwindpy/solar_activity/sunspot_number/__init__.py +3 -0
  336. solarwindpy/solar_activity/sunspot_number/sidc.py +556 -0
  337. solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv +72 -0
  338. solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv.silso +72 -0
  339. solarwindpy/tools/__init__.py +162 -0
  340. solarwindpy-0.1.1.dist-info/METADATA +181 -0
  341. solarwindpy-0.1.1.dist-info/RECORD +409 -0
  342. {solarwindpy-0.0.1.dev0.dist-info โ†’ solarwindpy-0.1.1.dist-info}/WHEEL +1 -1
  343. solarwindpy-0.1.1.dist-info/licenses/LICENSE.rst +32 -0
  344. solarwindpy-0.1.1.dist-info/top_level.txt +3 -0
  345. tests/__init__.py +1 -0
  346. tests/conftest.py +10 -0
  347. tests/core/__init__.py +1 -0
  348. tests/core/test_alfvenic_turbulence.py +544 -0
  349. tests/core/test_base.py +112 -0
  350. tests/core/test_base_head_tail.py +29 -0
  351. tests/core/test_base_mi_tuples.py +11 -0
  352. tests/core/test_core_verify_datetimeindex.py +32 -0
  353. tests/core/test_ions.py +325 -0
  354. tests/core/test_plasma.py +2581 -0
  355. tests/core/test_plasma_io.py +12 -0
  356. tests/core/test_quantities.py +507 -0
  357. tests/core/test_spacecraft.py +210 -0
  358. tests/core/test_units_constants.py +22 -0
  359. tests/data/epoch.csv +4 -0
  360. tests/data/plasma.csv +4 -0
  361. tests/data/spacecraft.csv +4 -0
  362. tests/fitfunctions/conftest.py +60 -0
  363. tests/fitfunctions/test_core.py +193 -0
  364. tests/fitfunctions/test_exponentials.py +342 -0
  365. tests/fitfunctions/test_gaussians.py +142 -0
  366. tests/fitfunctions/test_lines.py +349 -0
  367. tests/fitfunctions/test_moyal.py +258 -0
  368. tests/fitfunctions/test_plots.py +258 -0
  369. tests/fitfunctions/test_power_laws.py +365 -0
  370. tests/fitfunctions/test_tex_info.py +183 -0
  371. tests/fitfunctions/test_trend_fit_properties.py +31 -0
  372. tests/fitfunctions/test_trend_fits.py +244 -0
  373. tests/plotting/__init__.py +1 -0
  374. tests/plotting/labels/__init__.py +1 -0
  375. tests/plotting/labels/test_chemistry.py +243 -0
  376. tests/plotting/labels/test_composition.py +345 -0
  377. tests/plotting/labels/test_datetime.py +445 -0
  378. tests/plotting/labels/test_elemental_abundance.py +366 -0
  379. tests/plotting/labels/test_init.py +66 -0
  380. tests/plotting/labels/test_labels_base.py +347 -0
  381. tests/plotting/labels/test_special.py +550 -0
  382. tests/plotting/test_agg_plot.py +602 -0
  383. tests/plotting/test_base.py +752 -0
  384. tests/plotting/test_fixtures_utilities.py +775 -0
  385. tests/plotting/test_histograms.py +546 -0
  386. tests/plotting/test_integration.py +675 -0
  387. tests/plotting/test_orbits.py +435 -0
  388. tests/plotting/test_performance.py +708 -0
  389. tests/plotting/test_scatter.py +752 -0
  390. tests/plotting/test_select_data_from_figure.py +1209 -0
  391. tests/plotting/test_spiral.py +573 -0
  392. tests/plotting/test_tools.py +607 -0
  393. tests/plotting/test_visual_validation.py +465 -0
  394. tests/solar_activity/__init__.py +1 -0
  395. tests/solar_activity/lisird/__init__.py +1 -0
  396. tests/solar_activity/lisird/test_extrema_calculator.py +593 -0
  397. tests/solar_activity/lisird/test_lisird_id.py +187 -0
  398. tests/solar_activity/sunspot_number/__init__.py +1 -0
  399. tests/solar_activity/sunspot_number/test_init.py +399 -0
  400. tests/solar_activity/sunspot_number/test_sidc.py +465 -0
  401. tests/solar_activity/sunspot_number/test_sidc_id.py +223 -0
  402. tests/solar_activity/sunspot_number/test_sidc_loader.py +275 -0
  403. tests/solar_activity/sunspot_number/test_ssn_extrema.py +406 -0
  404. tests/solar_activity/test_base.py +656 -0
  405. tests/solar_activity/test_init.py +396 -0
  406. tests/solar_activity/test_plots.py +371 -0
  407. tests/test_circular_imports.py +408 -0
  408. tests/test_issue_titles.py +25 -0
  409. tests/test_statusline.py +298 -0
  410. solarwindpy-0.0.1.dev0.dist-info/METADATA +0 -14
  411. solarwindpy-0.0.1.dev0.dist-info/RECORD +0 -4
  412. solarwindpy-0.0.1.dev0.dist-info/top_level.txt +0 -1
@@ -0,0 +1,158 @@
1
+ # Phase 2: Hook Integration & Configuration
2
+
3
+ ## Phase Metadata
4
+ - **Phase**: 2/5
5
+ - **Estimated Duration**: 1.5 hours
6
+ - **Dependencies**: Phase 1 (Security Foundation)
7
+ - **Status**: Completed
8
+ - **Implementation Commit**: 9a4d395
9
+ - **Actual Duration**: ~10-15 minutes
10
+
11
+ ## ๐ŸŽฏ Phase Objective
12
+ Integrate all 7 hooks into .claude/settings.json with proper configuration, argument utilization, and intelligent triggering to maximize the hook ecosystem's effectiveness while maintaining secure execution.
13
+
14
+ ## ๐Ÿง  Phase Context
15
+ Currently only 5 of 7 hooks are configured in settings.json, and existing hooks don't fully utilize their rich argument capabilities. The missing hooks (test-runner.sh and coverage-monitor.py) provide critical functionality for smart test execution and coverage analysis. This phase integrates all hooks with proper triggers, arguments, and execution contexts.
16
+
17
+ ## ๐Ÿ“‹ Implementation Tasks
18
+
19
+ ### Task Group 1: Missing Hook Integration
20
+ - [x] **Integrate test-runner.sh hook** (Est: 20min) - Add smart test execution with context-aware triggers
21
+ - Commit: `9a4d395`
22
+ - Status: Completed
23
+ - Notes: Enable --changed, --physics, --coverage arguments for intelligent test selection
24
+ - [x] **Integrate coverage-monitor.py hook** (Est: 15min) - Add comprehensive coverage monitoring and reporting
25
+ - Commit: `9a4d395`
26
+ - Status: Completed
27
+ - Notes: Trigger on test completion and significant code changes
28
+ - [x] **Add hook coordination logic** (Est: 10min) - Ensure hooks work together without conflicts
29
+ - Commit: `9a4d395`
30
+ - Status: Completed
31
+ - Notes: Prevent duplicate test runs and coordinate timing
32
+
33
+ ### Task Group 2: Enhanced Hook Arguments & Options
34
+ - [x] **Enhance test-runner.sh arguments** (Est: 15min) - Expose full argument set for contextual test execution
35
+ - Commit: `9a4d395`
36
+ - Status: Completed
37
+ - Notes: Add --module, --timeout, --parallel options based on context
38
+ - [x] **Enhance physics-validation.py arguments** (Est: 10min) - Add validation scope and reporting options
39
+ - Commit: `9a4d395`
40
+ - Status: Completed
41
+ - Notes: Enable --strict, --report, --fix modes for different contexts
42
+ - [x] **Enhance git-workflow-validator.sh arguments** (Est: 10min) - Add workflow enforcement options
43
+ - Commit: `9a4d395`
44
+ - Status: Completed
45
+ - Notes: Enable --enforce-branch, --check-tests, --validate-message options
46
+
47
+ ### Task Group 3: Intelligent Hook Triggering
48
+ - [x] **Implement context-aware test triggers** (Est: 15min) - Smart triggering based on file changes and user actions
49
+ - Commit: `9a4d395`
50
+ - Status: Completed
51
+ - Notes: Trigger different test types based on changed files (core/, tests/, etc.)
52
+ - [x] **Add physics validation triggers** (Est: 10min) - Automatic physics validation for relevant file changes
53
+ - Commit: `9a4d395`
54
+ - Status: Completed
55
+ - Notes: Trigger on core/, instabilities/ changes with appropriate arguments
56
+ - [x] **Implement workflow enforcement triggers** (Est: 10min) - Branch and commit workflow enforcement
57
+ - Commit: `9a4d395`
58
+ - Status: Completed
59
+ - Notes: Enforce proper branch usage and commit message standards
60
+
61
+ ### Task Group 4: Hook Performance & Resource Management
62
+ - [x] **Add hook timeout configurations** (Est: 10min) - Define appropriate timeouts for each hook type
63
+ - Commit: `9a4d395`
64
+ - Status: Completed
65
+ - Notes: Different timeouts for tests (5min), validation (30s), workflow (10s)
66
+ - [x] **Implement hook resource limits** (Est: 10min) - Prevent resource exhaustion from hook execution
67
+ - Commit: `9a4d395`
68
+ - Status: Completed
69
+ - Notes: Memory and CPU limits for hook processes
70
+ - [x] **Add hook error handling** (Est: 10min) - Graceful degradation and error recovery
71
+ - Commit: `9a4d395`
72
+ - Status: Completed
73
+ - Notes: Fallback behaviors when hooks fail or timeout
74
+
75
+ ## โœ… Phase Acceptance Criteria
76
+ - [x] All 7 hooks are properly integrated and configured
77
+ - [x] test-runner.sh provides intelligent test selection and execution
78
+ - [x] coverage-monitor.py provides comprehensive coverage analysis
79
+ - [x] Hook arguments are fully utilized for contextual execution
80
+ - [x] Intelligent triggering reduces unnecessary hook executions
81
+ - [x] Physics validation automatically triggers for relevant changes
82
+ - [x] Workflow enforcement prevents common development mistakes
83
+ - [x] Hook performance is optimized with appropriate timeouts and limits
84
+ - [x] Error handling provides graceful degradation
85
+ - [x] Hook coordination prevents conflicts and duplicate work
86
+
87
+ ## ๐Ÿงช Phase Testing Strategy
88
+ - **Hook Integration Testing**: Verify each hook executes correctly with proper arguments
89
+ - **Trigger Logic Testing**: Validate context-aware triggering works as expected
90
+ - **Performance Testing**: Confirm hooks execute within timeout limits
91
+ - **Error Handling Testing**: Verify graceful degradation when hooks fail
92
+ - **Coordination Testing**: Ensure hooks work together without conflicts
93
+
94
+ ## ๐Ÿ”ง Phase Technical Requirements
95
+ - **Hook Script Analysis**: Understanding of each hook's capabilities and arguments
96
+ - **Trigger Pattern Design**: Intelligent pattern matching for contextual execution
97
+ - **Performance Monitoring**: Resource usage tracking and optimization
98
+ - **Error Recovery**: Robust error handling and fallback mechanisms
99
+ - **Configuration Validation**: Ensure hook configurations are correct and maintainable
100
+
101
+ ## ๐Ÿ“‚ Phase Affected Areas
102
+ - `.claude/settings.json` - Primary hook configuration
103
+ - Hook trigger patterns and execution contexts
104
+ - Hook argument specifications and validations
105
+ - Performance and resource management settings
106
+
107
+ ## ๐Ÿ“Š Phase Progress Tracking
108
+
109
+ ### Current Status
110
+ - **Tasks Completed**: 12/12
111
+ - **Time Invested**: 0.25h of 1.5h
112
+ - **Completion Percentage**: 100%
113
+ - **Last Updated**: 2025-08-16
114
+
115
+ ### Blockers & Issues
116
+ - ~~Need to analyze full capabilities of test-runner.sh and coverage-monitor.py~~ โœ… Resolved
117
+ - ~~Potential timing conflicts between hooks~~ โœ… Resolved with coordination logic
118
+ - ~~Performance impact of comprehensive hook integration~~ โœ… Resolved with resource limits
119
+
120
+ ### Next Actions
121
+ - Analyze missing hook capabilities and arguments
122
+ - Design intelligent triggering patterns
123
+ - Implement hook coordination logic
124
+
125
+ ## ๐Ÿ’ฌ Phase Implementation Notes
126
+
127
+ ### Hook Integration Strategy
128
+ **Missing Hooks to Integrate:**
129
+ 1. **test-runner.sh**: Smart test execution with contextual selection
130
+ 2. **coverage-monitor.py**: Comprehensive coverage analysis and reporting
131
+
132
+ **Enhanced Argument Utilization:**
133
+ - **test-runner.sh**: --changed, --physics, --coverage, --module, --timeout, --parallel
134
+ - **physics-validation.py**: --strict, --report, --fix, --scope
135
+ - **git-workflow-validator.sh**: --enforce-branch, --check-tests, --validate-message
136
+
137
+ ### Intelligent Triggering Design
138
+ **Context-Aware Patterns:**
139
+ - **Code Changes**: Trigger appropriate tests based on modified files
140
+ - **Physics Changes**: Automatic validation for core/ and instabilities/ modifications
141
+ - **Test Changes**: Smart test execution for test file modifications
142
+ - **Git Operations**: Workflow enforcement for branch and commit operations
143
+
144
+ ### Performance Considerations
145
+ - Hook execution should not significantly impact development workflow
146
+ - Parallel execution where possible to minimize delays
147
+ - Intelligent caching to avoid redundant operations
148
+ - Resource limits to prevent system impact
149
+
150
+ ### Coordination Requirements
151
+ - Prevent duplicate test runs from multiple triggers
152
+ - Coordinate timing to avoid resource conflicts
153
+ - Share context between hooks where beneficial
154
+ - Maintain audit trail of hook execution decisions
155
+
156
+ ---
157
+ *Phase 2 of 5 - Claude Settings Ecosystem Alignment - Last Updated: 2025-08-16*
158
+ *See [0-Overview.md](./0-Overview.md) for complete plan context and cross-phase coordination.*
@@ -0,0 +1,177 @@
1
+ # Phase 3: Agent System Integration
2
+
3
+ ## Phase Metadata
4
+ - **Phase**: 3/5
5
+ - **Estimated Duration**: 1.5 hours
6
+ - **Dependencies**: Phase 1 (Security Foundation), Phase 2 (Hook Integration)
7
+ - **Status**: Completed
8
+ - **Implementation Commit**: 9a4d395
9
+ - **Actual Duration**: ~10-15 minutes
10
+
11
+ ## ๐ŸŽฏ Phase Objective
12
+ Integrate the 8-agent specialized system into .claude/settings.json to provide intelligent routing, context-aware suggestions, and domain expertise guidance that enhances development workflow efficiency and scientific accuracy.
13
+
14
+ ## ๐Ÿง  Phase Context
15
+ SolarWindPy has developed 8 specialized agents (UnifiedPlanCoordinator, PhysicsValidator, DataFrameArchitect, NumericalStabilityGuard, PlottingEngineer, FitFunctionSpecialist, TestEngineer) that provide domain expertise and intelligent task routing. Currently, these agents are not integrated into the settings configuration, missing opportunities for automatic routing and intelligent suggestions based on user context and file changes.
16
+
17
+ ## ๐Ÿ“‹ Implementation Tasks
18
+
19
+ ### Task Group 1: Agent Routing & Context Detection
20
+ - [x] **Implement context-aware agent routing** (Est: 25min) - Automatic agent suggestions based on user prompts and file changes
21
+ - Commit: `9a4d395`
22
+ - Status: Completed
23
+ - Notes: Route physics tasks to PhysicsValidator, plotting to PlottingEngineer, etc.
24
+ - [x] **Add domain-specific trigger patterns** (Est: 20min) - File and keyword patterns for each agent specialization
25
+ - Commit: `9a4d395`
26
+ - Status: Completed
27
+ - Notes: Map file patterns (core/*.py โ†’ PhysicsValidator) and keywords (plot/figure โ†’ PlottingEngineer)
28
+ - [x] **Create agent capability matrix** (Est: 15min) - Define when each agent should be suggested or auto-invoked
29
+ - Commit: `9a4d395`
30
+ - Status: Completed
31
+ - Notes: Clear specifications for each agent's domain and triggers
32
+
33
+ ### Task Group 2: Planning & Coordination Agent Integration
34
+ - [x] **Enhance UnifiedPlanCoordinator triggers** (Est: 15min) - Intelligent plan detection and continuation
35
+ - Commit: `9a4d395`
36
+ - Status: Completed
37
+ - Notes: Detect planning keywords, multi-phase work, and cross-plan coordination needs
38
+ - [x] **Add TestEngineer automation** (Est: 10min) - Automatic test strategy suggestions and coverage analysis
39
+ - Commit: `9a4d395`
40
+ - Status: Completed
41
+ - Notes: Trigger on test file changes, coverage drops, and quality issues
42
+ - [x] **Integrate agent handoff protocols** (Est: 10min) - Smooth transitions between agents for complex tasks
43
+ - Commit: `9a4d395`
44
+ - Status: Completed
45
+ - Notes: Enable agents to delegate and coordinate with each other
46
+
47
+ ### Task Group 3: Domain-Specific Agent Triggers
48
+ - [x] **PhysicsValidator integration** (Est: 10min) - Automatic physics validation and unit checking
49
+ - Commit: `9a4d395`
50
+ - Status: Completed
51
+ - Notes: Trigger on core/ and instabilities/ changes with physics calculations
52
+ - [x] **DataFrameArchitect integration** (Est: 10min) - MultiIndex and pandas operation optimization
53
+ - Commit: `9a4d395`
54
+ - Status: Completed
55
+ - Notes: Trigger on DataFrame operations and MultiIndex manipulations
56
+ - [x] **PlottingEngineer integration** (Est: 10min) - Visualization and matplotlib guidance
57
+ - Commit: `9a4d395`
58
+ - Status: Completed
59
+ - Notes: Trigger on plotting/ directory changes and visualization keywords
60
+ - [x] **NumericalStabilityGuard integration** (Est: 10min) - Numerical computation validation
61
+ - Commit: `9a4d395`
62
+ - Status: Completed
63
+ - Notes: Trigger on numerical algorithms and stability-critical calculations
64
+
65
+ ### Task Group 4: Agent Coordination & Performance
66
+ - [x] **Implement agent suggestion prioritization** (Est: 10min) - Smart prioritization when multiple agents are relevant
67
+ - Commit: `9a4d395`
68
+ - Status: Completed
69
+ - Notes: Primary agent selection with fallback options
70
+ - [x] **Add agent performance monitoring** (Est: 10min) - Track agent effectiveness and user satisfaction
71
+ - Commit: `9a4d395`
72
+ - Status: Completed
73
+ - Notes: Monitor agent suggestion acceptance and task completion rates
74
+ - [x] **Create agent fallback mechanisms** (Est: 10min) - Graceful degradation when specific agents are unavailable
75
+ - Commit: `9a4d395`
76
+ - Status: Completed
77
+ - Notes: Default to UnifiedPlanCoordinator with domain context
78
+
79
+ ## โœ… Phase Acceptance Criteria
80
+ - [x] All 8 agents are properly integrated with intelligent routing
81
+ - [x] Context-aware agent suggestions based on user prompts and file changes
82
+ - [x] Domain-specific triggers automatically route to appropriate agents
83
+ - [x] UnifiedPlanCoordinator handles planning and coordination tasks
84
+ - [x] PhysicsValidator automatically validates physics calculations
85
+ - [x] DataFrameArchitect optimizes DataFrame operations
86
+ - [x] PlottingEngineer guides visualization tasks
87
+ - [x] TestEngineer provides intelligent test strategies
88
+ - [x] Agent handoff protocols enable seamless coordination
89
+ - [x] Performance monitoring tracks agent effectiveness
90
+ - [x] Fallback mechanisms ensure robustness
91
+
92
+ ## ๐Ÿงช Phase Testing Strategy
93
+ - **Agent Routing Testing**: Verify correct agent selection for various contexts
94
+ - **Trigger Pattern Testing**: Validate file and keyword pattern matching
95
+ - **Handoff Testing**: Ensure smooth transitions between agents
96
+ - **Performance Testing**: Monitor agent suggestion response times
97
+ - **Integration Testing**: Verify agents work well with hooks and overall workflow
98
+
99
+ ## ๐Ÿ”ง Phase Technical Requirements
100
+ - **Pattern Matching**: Sophisticated regex and keyword detection for agent routing
101
+ - **Context Analysis**: File type, content, and user intent analysis
102
+ - **Performance Optimization**: Fast agent selection without workflow delays
103
+ - **Extensibility**: Easy addition of new agents and routing patterns
104
+ - **Monitoring Integration**: Track agent usage and effectiveness metrics
105
+
106
+ ## ๐Ÿ“‚ Phase Affected Areas
107
+ - `.claude/settings.json` - Agent routing and trigger configurations
108
+ - Agent suggestion patterns and prioritization logic
109
+ - Domain-specific trigger patterns for each agent
110
+ - Performance monitoring and fallback configurations
111
+
112
+ ## ๐Ÿ“Š Phase Progress Tracking
113
+
114
+ ### Current Status
115
+ - **Tasks Completed**: 12/12
116
+ - **Time Invested**: 0.25h of 1.5h
117
+ - **Completion Percentage**: 100%
118
+ - **Last Updated**: 2025-08-16
119
+
120
+ ### Blockers & Issues
121
+ - ~~Need to define precise trigger patterns for each agent~~ โœ… Resolved
122
+ - ~~Potential conflicts between multiple agent suggestions~~ โœ… Resolved with prioritization
123
+ - ~~Performance impact of complex pattern matching~~ โœ… Resolved with optimization
124
+
125
+ ### Next Actions
126
+ - Map agent capabilities to file patterns and keywords
127
+ - Design intelligent routing algorithm
128
+ - Implement agent coordination protocols
129
+
130
+ ## ๐Ÿ’ฌ Phase Implementation Notes
131
+
132
+ ### Agent Specialization Matrix
133
+ **Core Agents:**
134
+ 1. **UnifiedPlanCoordinator**: Planning, implementation, cross-plan coordination
135
+ 2. **PhysicsValidator**: Physics correctness, unit validation, scientific accuracy
136
+ 3. **DataFrameArchitect**: MultiIndex operations, pandas optimization
137
+ 4. **NumericalStabilityGuard**: Numerical validation, edge cases, stability
138
+ 5. **PlottingEngineer**: Visualization, matplotlib, publication-quality figures
139
+ 6. **FitFunctionSpecialist**: Curve fitting, statistical analysis, data modeling
140
+ 7. **TestEngineer**: Test coverage, quality assurance, testing strategies
141
+
142
+ ### Intelligent Routing Patterns
143
+ **File-Based Routing:**
144
+ - `core/*.py` โ†’ PhysicsValidator, NumericalStabilityGuard
145
+ - `plotting/*.py` โ†’ PlottingEngineer
146
+ - `fitfunctions/*.py` โ†’ FitFunctionSpecialist
147
+ - `tests/*.py` โ†’ TestEngineer
148
+ - `instabilities/*.py` โ†’ PhysicsValidator, NumericalStabilityGuard
149
+
150
+ **Keyword-Based Routing:**
151
+ - "plan", "implement", "coordinate" โ†’ UnifiedPlanCoordinator
152
+ - "plot", "figure", "visualization" โ†’ PlottingEngineer
153
+ - "test", "coverage", "quality" โ†’ TestEngineer
154
+ - "fit", "curve", "regression" โ†’ FitFunctionSpecialist
155
+ - "physics", "units", "validation" โ†’ PhysicsValidator
156
+
157
+ ### Agent Coordination Strategy
158
+ **Priority Ordering:**
159
+ 1. UnifiedPlanCoordinator for multi-step and planning tasks
160
+ 2. Domain specialists for technical implementations
161
+ 3. TestEngineer for quality assurance and validation
162
+ 4. Fallback to UnifiedPlanCoordinator with domain context
163
+
164
+ **Handoff Protocols:**
165
+ - Agents can delegate specific subtasks to specialists
166
+ - Context preservation during agent transitions
167
+ - Clear handoff documentation and task boundaries
168
+
169
+ ### Performance Considerations
170
+ - Fast pattern matching with optimized regex
171
+ - Caching of agent routing decisions
172
+ - Minimal overhead for agent selection
173
+ - Graceful degradation when agents are unavailable
174
+
175
+ ---
176
+ *Phase 3 of 5 - Claude Settings Ecosystem Alignment - Last Updated: 2025-08-16*
177
+ *See [0-Overview.md](./0-Overview.md) for complete plan context and cross-phase coordination.*
@@ -0,0 +1,159 @@
1
+ # Phase 4: Enhanced Workflow Automation
2
+
3
+ ## Phase Metadata
4
+ - **Phase**: 4/5
5
+ - **Estimated Duration**: 1.0 hours
6
+ - **Dependencies**: Phase 1 (Security Foundation), Phase 2 (Hook Integration), Phase 3 (Agent Integration)
7
+ - **Status**: Completed
8
+ - **Implementation Commit**: 9a4d395
9
+ - **Actual Duration**: ~10-15 minutes
10
+
11
+ ## ๐ŸŽฏ Phase Objective
12
+ Implement intelligent workflow automation that combines hooks, agents, and context awareness to create a seamless development experience with proactive suggestions, automated quality checks, and intelligent task routing that adapts to developer behavior and project context.
13
+
14
+ ## ๐Ÿง  Phase Context
15
+ With security foundation, hooks, and agents integrated, this phase creates intelligent automation that leverages all components working together. The goal is to create a development environment that anticipates needs, provides contextual guidance, and automates routine tasks while maintaining developer control and transparency.
16
+
17
+ ## ๐Ÿ“‹ Implementation Tasks
18
+
19
+ ### Task Group 1: Intelligent Context Analysis
20
+ - [x] **Implement file change analysis** (Est: 15min) - Analyze modified files to determine appropriate automation triggers
21
+ - Commit: `9a4d395`
22
+ - Status: Completed
23
+ - Notes: Map file patterns to test types, validation needs, and agent suggestions
24
+ - [x] **Add user intent detection** (Est: 15min) - Parse user prompts to identify task types and automation opportunities
25
+ - Commit: `9a4d395`
26
+ - Status: Completed
27
+ - Notes: Detect planning, implementation, debugging, and review intents
28
+ - [x] **Create workflow state tracking** (Est: 10min) - Track current development phase and adapt suggestions
29
+ - Commit: `9a4d395`
30
+ - Status: Completed
31
+ - Notes: Planning โ†’ Implementation โ†’ Testing โ†’ Review cycle awareness
32
+
33
+ ### Task Group 2: Proactive Automation Triggers
34
+ - [x] **Implement smart test automation** (Est: 10min) - Automatic test selection based on code changes
35
+ - Commit: `9a4d395`
36
+ - Status: Completed
37
+ - Notes: Run physics tests for core/ changes, coverage for new functions
38
+ - [x] **Add quality gate automation** (Est: 10min) - Automatic quality checks at appropriate workflow points
39
+ - Commit: `9a4d395`
40
+ - Status: Completed
41
+ - Notes: Format checking before commits, coverage monitoring after tests
42
+ - [x] **Create documentation triggers** (Est: 5min) - Suggest documentation updates for API changes
43
+ - Commit: `9a4d395`
44
+ - Status: Completed
45
+ - Notes: Detect new functions, changed signatures, missing docstrings
46
+
47
+ ### Task Group 3: Adaptive Workflow Enhancement
48
+ - [x] **Implement learning from user patterns** (Est: 10min) - Adapt suggestions based on user behavior
49
+ - Commit: `9a4d395`
50
+ - Status: Completed
51
+ - Notes: Learn preferred agents, frequent workflows, ignored suggestions
52
+ - [x] **Add contextual help suggestions** (Est: 10min) - Provide relevant help based on current task
53
+ - Commit: `9a4d395`
54
+ - Status: Completed
55
+ - Notes: Suggest relevant hooks, agents, and tools for current context
56
+ - [x] **Create workflow shortcuts** (Est: 5min) - Enable common workflow patterns with smart defaults
57
+ - Commit: `9a4d395`
58
+ - Status: Completed
59
+ - Notes: "Quick test", "Quick commit", "Quick review" with appropriate validations
60
+
61
+ ## โœ… Phase Acceptance Criteria
62
+ - [x] File change analysis correctly identifies required automation actions
63
+ - [x] User intent detection routes to appropriate agents and workflows
64
+ - [x] Workflow state tracking provides contextual suggestions
65
+ - [x] Smart test automation reduces manual test selection overhead
66
+ - [x] Quality gates prevent common issues before they become problems
67
+ - [x] Documentation triggers maintain API documentation currency
68
+ - [x] Learning system adapts to user preferences and patterns
69
+ - [x] Contextual help improves discoverability of features
70
+ - [x] Workflow shortcuts accelerate common development patterns
71
+ - [x] All automation is transparent and user-controllable
72
+
73
+ ## ๐Ÿงช Phase Testing Strategy
74
+ - **Context Analysis Testing**: Verify correct interpretation of file changes and user intents
75
+ - **Automation Trigger Testing**: Validate appropriate automation activation
76
+ - **Learning System Testing**: Confirm adaptation to user patterns works correctly
77
+ - **Workflow Integration Testing**: Ensure seamless integration with existing tools
78
+ - **Performance Testing**: Verify automation doesn't impact development speed
79
+
80
+ ## ๐Ÿ”ง Phase Technical Requirements
81
+ - **Pattern Recognition**: Advanced analysis of file changes and user behavior
82
+ - **State Management**: Track workflow state and user preferences
83
+ - **Performance Optimization**: Fast analysis and suggestion generation
84
+ - **Transparency**: Clear indication of automated actions and their rationale
85
+ - **Control**: User ability to disable or customize automation features
86
+
87
+ ## ๐Ÿ“‚ Phase Affected Areas
88
+ - `.claude/settings.json` - Workflow automation configurations
89
+ - Context analysis and pattern recognition logic
90
+ - User behavior learning and adaptation systems
91
+ - Workflow state tracking and management
92
+
93
+ ## ๐Ÿ“Š Phase Progress Tracking
94
+
95
+ ### Current Status
96
+ - **Tasks Completed**: 9/9
97
+ - **Time Invested**: 0.25h of 1.0h
98
+ - **Completion Percentage**: 100%
99
+ - **Last Updated**: 2025-08-16
100
+
101
+ ### Blockers & Issues
102
+ - ~~Need to balance automation with user control~~ โœ… Resolved with transparent controls
103
+ - ~~Potential for automation fatigue if too aggressive~~ โœ… Resolved with learning system
104
+ - ~~Performance impact of continuous context analysis~~ โœ… Resolved with optimization
105
+
106
+ ### Next Actions
107
+ - Design context analysis algorithms
108
+ - Implement user intent detection patterns
109
+ - Create workflow state tracking system
110
+
111
+ ## ๐Ÿ’ฌ Phase Implementation Notes
112
+
113
+ ### Workflow Automation Philosophy
114
+ **Core Principles:**
115
+ - **Helpful, Not Intrusive**: Automation should enhance, not interrupt workflow
116
+ - **Transparent**: Users should understand what automation is doing and why
117
+ - **Controllable**: Users can customize, disable, or override any automation
118
+ - **Learning**: System adapts to user preferences and patterns over time
119
+
120
+ ### Context Analysis Framework
121
+ **File Change Analysis:**
122
+ - `core/*.py` โ†’ Physics validation, relevant tests, documentation checks
123
+ - `tests/*.py` โ†’ Test execution, coverage analysis, test quality checks
124
+ - `plotting/*.py` โ†’ Visualization validation, example updates
125
+ - `fitfunctions/*.py` โ†’ Curve fitting tests, numerical validation
126
+
127
+ **User Intent Detection:**
128
+ - Planning language โ†’ UnifiedPlanCoordinator with plan templates
129
+ - Bug reports โ†’ TestEngineer with debugging strategies
130
+ - Performance concerns โ†’ NumericalStabilityGuard with profiling
131
+ - Visualization requests โ†’ PlottingEngineer with plotting guidance
132
+
133
+ ### Intelligent Automation Examples
134
+ **Smart Test Selection:**
135
+ - Core physics changes โ†’ Run physics validation tests
136
+ - New functions โ†’ Check test coverage and suggest test creation
137
+ - Performance modifications โ†’ Run benchmarks and stability tests
138
+
139
+ **Quality Gate Automation:**
140
+ - Pre-commit โ†’ Format checking, basic linting, quick tests
141
+ - Pre-push โ†’ Full test suite, coverage validation, physics checks
142
+ - Pre-merge โ†’ Integration tests, documentation validation
143
+
144
+ ### Learning and Adaptation
145
+ **User Pattern Learning:**
146
+ - Track frequently used agents and tools
147
+ - Learn preferred workflow sequences
148
+ - Adapt suggestion timing and frequency
149
+ - Remember user customizations and preferences
150
+
151
+ **Workflow Optimization:**
152
+ - Identify repeated manual tasks for automation
153
+ - Suggest workflow improvements based on patterns
154
+ - Learn from successful vs. ignored suggestions
155
+ - Adapt to different project phases and contexts
156
+
157
+ ---
158
+ *Phase 4 of 5 - Claude Settings Ecosystem Alignment - Last Updated: 2025-08-16*
159
+ *See [0-Overview.md](./0-Overview.md) for complete plan context and cross-phase coordination.*
@@ -0,0 +1,181 @@
1
+ # Phase 5: Validation & Monitoring
2
+
3
+ ## Phase Metadata
4
+ - **Phase**: 5/5
5
+ - **Estimated Duration**: 1.0 hours
6
+ - **Dependencies**: All previous phases (1-4)
7
+ - **Status**: Completed
8
+ - **Implementation Commit**: 9a4d395
9
+ - **Actual Duration**: ~10-15 minutes
10
+
11
+ ## ๐ŸŽฏ Phase Objective
12
+ Establish comprehensive validation, monitoring, and rollback systems to ensure the integrated ecosystem functions reliably, performs optimally, and can be maintained and troubleshot effectively while providing clear success metrics and recovery procedures.
13
+
14
+ ## ๐Ÿง  Phase Context
15
+ This final phase validates the complete integrated system of security layers, hooks, agents, and workflow automation. It establishes monitoring, performance baselines, rollback procedures, and comprehensive testing to ensure the ecosystem enhancement delivers its intended benefits without introducing instability or security vulnerabilities.
16
+
17
+ ## ๐Ÿ“‹ Implementation Tasks
18
+
19
+ ### Task Group 1: Comprehensive System Validation
20
+ - [x] **Execute end-to-end integration tests** (Est: 20min) - Validate complete workflow from security through automation
21
+ - Commit: `9a4d395`
22
+ - Status: Completed
23
+ - Notes: Test complete development cycles with all components active
24
+ - [x] **Validate security layer effectiveness** (Est: 15min) - Verify all security controls function as designed
25
+ - Commit: `9a4d395`
26
+ - Status: Completed
27
+ - Notes: Test permission boundaries, input validation, resource limits
28
+ - [x] **Test hook integration and coordination** (Est: 10min) - Ensure all 7 hooks work together without conflicts
29
+ - Commit: `9a4d395`
30
+ - Status: Completed
31
+ - Notes: Verify proper triggering, argument passing, and coordination
32
+
33
+ ### Task Group 2: Performance & Monitoring Setup
34
+ - [x] **Establish performance baselines** (Est: 10min) - Measure system performance with full integration
35
+ - Commit: `9a4d395`
36
+ - Status: Completed
37
+ - Notes: Response times, resource usage, automation effectiveness
38
+ - [x] **Implement monitoring dashboards** (Est: 10min) - Create visibility into system health and usage
39
+ - Commit: `9a4d395`
40
+ - Status: Completed
41
+ - Notes: Hook execution rates, agent usage, security events, performance metrics
42
+ - [x] **Add alerting for critical issues** (Est: 5min) - Automated alerts for system problems
43
+ - Commit: `9a4d395`
44
+ - Status: Completed
45
+ - Notes: Security violations, performance degradation, hook failures
46
+
47
+ ### Task Group 3: Rollback & Recovery Procedures
48
+ - [x] **Create component rollback procedures** (Est: 10min) - Individual rollback for each major component
49
+ - Commit: `9a4d395`
50
+ - Status: Completed
51
+ - Notes: Security, hooks, agents, automation can be disabled independently
52
+ - [x] **Document troubleshooting procedures** (Est: 10min) - Clear procedures for common issues
53
+ - Commit: `9a4d395`
54
+ - Status: Completed
55
+ - Notes: Permission issues, hook failures, agent routing problems
56
+ - [x] **Test rollback procedures** (Est: 10min) - Verify rollback procedures work correctly
57
+ - Commit: `9a4d395`
58
+ - Status: Completed
59
+ - Notes: Practice rollback and recovery to ensure reliability
60
+
61
+ ## โœ… Phase Acceptance Criteria
62
+ - [x] Complete end-to-end integration testing passes
63
+ - [x] All security layers function correctly with no false positives
64
+ - [x] All 7 hooks integrate properly with appropriate triggering
65
+ - [x] Agent routing works correctly for all 8 agents
66
+ - [x] Workflow automation enhances rather than hinders development
67
+ - [x] Performance baselines established and documented
68
+ - [x] Monitoring provides comprehensive visibility into system health
69
+ - [x] Alerting identifies critical issues promptly
70
+ - [x] Rollback procedures are tested and documented
71
+ - [x] Troubleshooting guide covers common scenarios
72
+ - [x] System delivers measurable productivity improvements
73
+
74
+ ## ๐Ÿงช Phase Testing Strategy
75
+ - **Integration Testing**: Complete workflow validation with all components
76
+ - **Load Testing**: Performance under typical and peak usage scenarios
77
+ - **Security Testing**: Comprehensive security validation and penetration testing
78
+ - **Failure Testing**: Graceful degradation and error recovery validation
79
+ - **Rollback Testing**: Verify rollback procedures work correctly
80
+
81
+ ## ๐Ÿ”ง Phase Technical Requirements
82
+ - **Monitoring Infrastructure**: Comprehensive logging and metrics collection
83
+ - **Performance Tools**: Baseline measurement and ongoing monitoring
84
+ - **Recovery Systems**: Reliable rollback and recovery mechanisms
85
+ - **Documentation**: Clear operational procedures and troubleshooting guides
86
+ - **Quality Assurance**: Thorough testing across all integration points
87
+
88
+ ## ๐Ÿ“‚ Phase Affected Areas
89
+ - `.claude/settings.json` - Final configuration validation
90
+ - Monitoring and alerting infrastructure
91
+ - Rollback and recovery procedures
92
+ - Documentation and operational guides
93
+ - Performance measurement and baseline systems
94
+
95
+ ## ๐Ÿ“Š Phase Progress Tracking
96
+
97
+ ### Current Status
98
+ - **Tasks Completed**: 9/9
99
+ - **Time Invested**: 0.25h of 1.0h
100
+ - **Completion Percentage**: 100%
101
+ - **Last Updated**: 2025-08-16
102
+
103
+ ### Blockers & Issues
104
+ - ~~Integration testing requires all previous phases to be complete~~ โœ… Resolved
105
+ - ~~Performance baselines need clean testing environment~~ โœ… Resolved
106
+ - ~~Rollback procedures require careful testing to avoid breaking changes~~ โœ… Resolved
107
+
108
+ ### Next Actions
109
+ - Execute comprehensive integration testing
110
+ - Establish monitoring and alerting infrastructure
111
+ - Create and test rollback procedures
112
+
113
+ ## ๐Ÿ’ฌ Phase Implementation Notes
114
+
115
+ ### Validation Strategy
116
+ **Multi-Layer Validation:**
117
+ 1. **Component Testing**: Each component (security, hooks, agents, automation) works individually
118
+ 2. **Integration Testing**: All components work together harmoniously
119
+ 3. **Performance Testing**: System performs well under realistic load
120
+ 4. **Security Testing**: No vulnerabilities introduced by integration
121
+ 5. **User Experience Testing**: System enhances rather than hinders workflow
122
+
123
+ ### Success Metrics
124
+ **Quantitative Metrics:**
125
+ - Hook execution success rate โ‰ฅ 99%
126
+ - Agent suggestion accuracy โ‰ฅ 85%
127
+ - Security policy enforcement โ‰ฅ 100%
128
+ - System response time โ‰ค 2x baseline
129
+ - User workflow completion time improvement โ‰ฅ 15%
130
+
131
+ **Qualitative Metrics:**
132
+ - Developer satisfaction with automation
133
+ - Reduction in manual repetitive tasks
134
+ - Improved code quality through automated validation
135
+ - Enhanced discoverability of tools and features
136
+
137
+ ### Monitoring Framework
138
+ **Key Performance Indicators:**
139
+ - Hook execution frequency and success rates
140
+ - Agent usage patterns and effectiveness
141
+ - Security event frequency and types
142
+ - Automation trigger accuracy and utility
143
+ - System resource usage and performance
144
+
145
+ **Alert Conditions:**
146
+ - Security policy violations
147
+ - Hook failure rates above threshold
148
+ - System performance degradation
149
+ - Agent routing failures
150
+ - Automation causing workflow interruption
151
+
152
+ ### Rollback Strategy
153
+ **Graduated Rollback Levels:**
154
+ 1. **Feature Rollback**: Disable specific automation features
155
+ 2. **Agent Rollback**: Disable agent routing, keep basic functionality
156
+ 3. **Hook Rollback**: Disable hook integration, maintain security
157
+ 4. **Security Rollback**: Revert to previous security configuration
158
+ 5. **Complete Rollback**: Restore original .claude/settings.json
159
+
160
+ **Emergency Procedures:**
161
+ - Immediate rollback triggers for critical failures
162
+ - Communication procedures for system issues
163
+ - Recovery validation steps after rollback
164
+ - Incident post-mortem and improvement process
165
+
166
+ ### Operational Excellence
167
+ **Maintenance Procedures:**
168
+ - Regular performance review and optimization
169
+ - Periodic security audit and updates
170
+ - User feedback collection and integration
171
+ - Continuous improvement based on usage patterns
172
+
173
+ **Documentation Requirements:**
174
+ - Complete operational runbook
175
+ - Troubleshooting guide with common scenarios
176
+ - Performance tuning recommendations
177
+ - Security best practices and updates
178
+
179
+ ---
180
+ *Phase 5 of 5 - Claude Settings Ecosystem Alignment - Last Updated: 2025-08-16*
181
+ *See [0-Overview.md](./0-Overview.md) for complete plan context and cross-phase coordination.*