solarwindpy 0.0.1.dev0__py3-none-any.whl → 0.1.1__py3-none-any.whl
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- plans/.velocity/metrics.json +96 -0
- plans/0-overview-template.md +268 -0
- plans/N-phase-template.md +106 -0
- plans/PLAN_AUDIT_SUMMARY.md +173 -0
- plans/TEMPLATE-USAGE-GUIDE.md +198 -0
- plans/__init__.py +1 -0
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- plans/abandoned/compaction-agent-system/compacted_state.md +85 -0
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- plans/abandoned/compaction-agent-system/system-validation-report.md +159 -0
- plans/abandoned/compaction-agent-system/usage-guide.md +210 -0
- plans/abandoned/hook-system-enhancement/0-Overview.md +214 -0
- plans/abandoned/hook-system-enhancement/1-Phase1-Core-Infrastructure.md +313 -0
- plans/abandoned/hook-system-enhancement/2-Phase2-Intelligent-Testing.md +385 -0
- plans/abandoned/hook-system-enhancement/3-Phase3-Physics-Validation.md +444 -0
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- plans/abandoned/hook-system-enhancement/6-Implementation-Timeline.md +274 -0
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- plans/abandoned/readthedocs-automation/3-Quality-Audit-ReadTheDocs-Integration.md +844 -0
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- plans/completed/circular-import-audit/4-Issue-Remediation.md +78 -0
- plans/completed/circular-import-audit/5-Preventive-Infrastructure.md +89 -0
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- plans/completed/claude-settings-ecosystem-alignment/3-Agent-System-Integration.md +177 -0
- plans/completed/claude-settings-ecosystem-alignment/4-Enhanced-Workflow-Automation.md +159 -0
- plans/completed/claude-settings-ecosystem-alignment/5-Validation-Monitoring.md +181 -0
- plans/completed/claude-settings-ecosystem-alignment/compacted_session_state.md +290 -0
- plans/completed/combined_plan_with_checklist_documentation/1-Overview-and-Goals.md +51 -0
- plans/completed/combined_plan_with_checklist_documentation/2-Toolchain-and-Hosting.md +69 -0
- plans/completed/combined_plan_with_checklist_documentation/3-Repository-Structure.md +61 -0
- plans/completed/combined_plan_with_checklist_documentation/4-Configuration-and-Standards.md +70 -0
- plans/completed/combined_plan_with_checklist_documentation/5-Documentation-Content.md +62 -0
- plans/completed/combined_plan_with_checklist_documentation/6-CI-CD-and-Validation.md +58 -0
- plans/completed/combined_plan_with_checklist_documentation/7-Maintenance.md +55 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/0-Overview.md +135 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/1-Common-fixtures.md +59 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/10-power_laws.md +56 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/2-core.py-FitFunction.md +118 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/3-gaussians.py-Gaussian-GaussianNormalized-GaussianLn.md +69 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/4-trend_fits.py-TrendFit.md +99 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/5-plots.py-FFPlot.md +98 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/6-tex_info.py-TeXinfo.md +79 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/7-Justification.md +49 -0
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- plans/completed/combined_test_plan_with_checklist_plotting/18-Fixtures-and-Utilities.md +86 -0
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- plans/completed/combined_test_plan_with_checklist_plotting/3-histograms.py.md +201 -0
- plans/completed/combined_test_plan_with_checklist_plotting/4-scatter.py.md +167 -0
- plans/completed/combined_test_plan_with_checklist_plotting/5-spiral.py.md +216 -0
- plans/completed/combined_test_plan_with_checklist_plotting/6-orbits.py.md +108 -0
- plans/completed/combined_test_plan_with_checklist_plotting/7-tools.py.md +86 -0
- plans/completed/combined_test_plan_with_checklist_plotting/8-select_data_from_figure.py.md +97 -0
- plans/completed/combined_test_plan_with_checklist_plotting/9-labels-base.py.md +88 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/.gitkeep +0 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/0-Overview.md +170 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/1-Package-Entry-Point-__init__.py.md +121 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/2-Core-Base-Classes-base.py.md +142 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/3-Plotting-Helpers-plots.py.md +123 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/4-LISIRD-Sub-package.md +119 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/5-Extrema-Calculator.md +103 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/6-Sunspot-Number-Sub-package.md +163 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/7-Sunspot-Number-Init.py.md +217 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/compacted_state.md +52 -0
- plans/completed/compaction-agent-modernization/0-Overview.md +156 -0
- plans/completed/compaction-agent-modernization/1-Architecture-Audit-Gap-Analysis.md +132 -0
- plans/completed/compaction-agent-modernization/2-Token-Baseline-Recalibration.md +153 -0
- plans/completed/compaction-agent-modernization/3-Agent-Reference-Updates.md +184 -0
- plans/completed/compaction-agent-modernization/4-Compression-Algorithm-Modernization.md +238 -0
- plans/completed/compaction-agent-modernization/5-Workflow-Integration-Streamlining.md +252 -0
- plans/completed/compaction-agent-modernization/6-Template-Structure-Optimization.md +240 -0
- plans/completed/compaction-agent-modernization/7-Integration-Testing-Validation.md +292 -0
- plans/completed/compaction-hook-enhancement/0-Overview.md +150 -0
- plans/completed/compaction-hook-enhancement/1-Token-Estimation-Enhancement.md +179 -0
- plans/completed/compaction-hook-enhancement/2-Compression-Intelligence.md +294 -0
- plans/completed/compaction-hook-enhancement/3-Git-Integration-Metadata.md +310 -0
- plans/completed/compaction-hook-enhancement/4-Session-Continuity-Features.md +358 -0
- plans/completed/compaction-hook-enhancement/5-Testing-Strategy.md +404 -0
- plans/completed/compaction-hook-enhancement/6-Integration-Roadmap.md +319 -0
- plans/completed/compaction-hook-enhancement/compacted_state.md +142 -0
- plans/completed/docstring-audit-enhancement/0-Overview.md +274 -0
- plans/completed/docstring-audit-enhancement/1-Infrastructure-Setup-and-Validation-Tools.md +206 -0
- plans/completed/docstring-audit-enhancement/2-Core-Physics-Modules-Enhancement.md +237 -0
- plans/completed/docstring-audit-enhancement/3-Fitfunctions-Mathematical-Modules-Enhancement.md +188 -0
- plans/completed/docstring-audit-enhancement/4-Plotting-Visualization-Modules-Enhancement.md +243 -0
- plans/completed/docstring-audit-enhancement/5-Specialized-Modules-Enhancement.md +216 -0
- plans/completed/docstring-audit-enhancement/6-Validation-and-Integration.md +216 -0
- plans/completed/fitfunctions-testing-implementation/0-Overview.md +130 -0
- plans/completed/fitfunctions-testing-implementation/1-Test-Infrastructure-Setup.md +79 -0
- plans/completed/fitfunctions-testing-implementation/2-Common-Fixtures-Test-Utilities.md +104 -0
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- plans/completed/fitfunctions-testing-implementation/4-Specialized-Function-Classes.md +210 -0
- plans/completed/fitfunctions-testing-implementation/5-Advanced-Classes-Testing.md +214 -0
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- solarwindpy/core/alfvenic_turbulence.py +804 -0
- solarwindpy/core/base.py +267 -0
- solarwindpy/core/ions.py +309 -0
- solarwindpy/core/plasma.py +2133 -0
- solarwindpy/core/spacecraft.py +256 -0
- solarwindpy/core/tensor.py +90 -0
- solarwindpy/core/units_constants.py +199 -0
- solarwindpy/core/vector.py +328 -0
- solarwindpy/fitfunctions/__init__.py +20 -0
- solarwindpy/fitfunctions/core.py +734 -0
- solarwindpy/fitfunctions/exponentials.py +188 -0
- solarwindpy/fitfunctions/gaussians.py +264 -0
- solarwindpy/fitfunctions/lines.py +116 -0
- solarwindpy/fitfunctions/moyal.py +71 -0
- solarwindpy/fitfunctions/plots.py +751 -0
- solarwindpy/fitfunctions/power_laws.py +209 -0
- solarwindpy/fitfunctions/tex_info.py +568 -0
- solarwindpy/fitfunctions/trend_fits.py +482 -0
- solarwindpy/instabilities/__init__.py +16 -0
- solarwindpy/instabilities/beta_ani.py +82 -0
- solarwindpy/instabilities/verscharen2016.py +631 -0
- solarwindpy/plotting/__init__.py +33 -0
- solarwindpy/plotting/agg_plot.py +489 -0
- solarwindpy/plotting/base.py +465 -0
- solarwindpy/plotting/hist1d.py +405 -0
- solarwindpy/plotting/hist2d.py +1035 -0
- solarwindpy/plotting/histograms.py +1845 -0
- solarwindpy/plotting/labels/__init__.py +104 -0
- solarwindpy/plotting/labels/base.py +686 -0
- solarwindpy/plotting/labels/chemistry.py +19 -0
- solarwindpy/plotting/labels/composition.py +100 -0
- solarwindpy/plotting/labels/datetime.py +235 -0
- solarwindpy/plotting/labels/elemental_abundance.py +73 -0
- solarwindpy/plotting/labels/special.py +794 -0
- solarwindpy/plotting/orbits.py +515 -0
- solarwindpy/plotting/scatter.py +99 -0
- solarwindpy/plotting/select_data_from_figure.py +329 -0
- solarwindpy/plotting/spiral.py +980 -0
- solarwindpy/plotting/tools.py +434 -0
- solarwindpy/scripts/__init__.py +1 -0
- solarwindpy/scripts/logs/.gitignore +1 -0
- solarwindpy/solar_activity/__init__.py +53 -0
- solarwindpy/solar_activity/base.py +605 -0
- solarwindpy/solar_activity/lisird/__init__.py +3 -0
- solarwindpy/solar_activity/lisird/extrema_calculator.py +394 -0
- solarwindpy/solar_activity/lisird/lisird.py +319 -0
- solarwindpy/solar_activity/plots.py +116 -0
- solarwindpy/solar_activity/sunspot_number/.DS_Store +0 -0
- solarwindpy/solar_activity/sunspot_number/__init__.py +3 -0
- solarwindpy/solar_activity/sunspot_number/sidc.py +556 -0
- solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv +72 -0
- solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv.silso +72 -0
- solarwindpy/tools/__init__.py +162 -0
- solarwindpy-0.1.1.dist-info/METADATA +181 -0
- solarwindpy-0.1.1.dist-info/RECORD +409 -0
- {solarwindpy-0.0.1.dev0.dist-info → solarwindpy-0.1.1.dist-info}/WHEEL +1 -1
- solarwindpy-0.1.1.dist-info/licenses/LICENSE.rst +32 -0
- solarwindpy-0.1.1.dist-info/top_level.txt +3 -0
- tests/__init__.py +1 -0
- tests/conftest.py +10 -0
- tests/core/__init__.py +1 -0
- tests/core/test_alfvenic_turbulence.py +544 -0
- tests/core/test_base.py +112 -0
- tests/core/test_base_head_tail.py +29 -0
- tests/core/test_base_mi_tuples.py +11 -0
- tests/core/test_core_verify_datetimeindex.py +32 -0
- tests/core/test_ions.py +325 -0
- tests/core/test_plasma.py +2581 -0
- tests/core/test_plasma_io.py +12 -0
- tests/core/test_quantities.py +507 -0
- tests/core/test_spacecraft.py +210 -0
- tests/core/test_units_constants.py +22 -0
- tests/data/epoch.csv +4 -0
- tests/data/plasma.csv +4 -0
- tests/data/spacecraft.csv +4 -0
- tests/fitfunctions/conftest.py +60 -0
- tests/fitfunctions/test_core.py +193 -0
- tests/fitfunctions/test_exponentials.py +342 -0
- tests/fitfunctions/test_gaussians.py +142 -0
- tests/fitfunctions/test_lines.py +349 -0
- tests/fitfunctions/test_moyal.py +258 -0
- tests/fitfunctions/test_plots.py +258 -0
- tests/fitfunctions/test_power_laws.py +365 -0
- tests/fitfunctions/test_tex_info.py +183 -0
- tests/fitfunctions/test_trend_fit_properties.py +31 -0
- tests/fitfunctions/test_trend_fits.py +244 -0
- tests/plotting/__init__.py +1 -0
- tests/plotting/labels/__init__.py +1 -0
- tests/plotting/labels/test_chemistry.py +243 -0
- tests/plotting/labels/test_composition.py +345 -0
- tests/plotting/labels/test_datetime.py +445 -0
- tests/plotting/labels/test_elemental_abundance.py +366 -0
- tests/plotting/labels/test_init.py +66 -0
- tests/plotting/labels/test_labels_base.py +347 -0
- tests/plotting/labels/test_special.py +550 -0
- tests/plotting/test_agg_plot.py +602 -0
- tests/plotting/test_base.py +752 -0
- tests/plotting/test_fixtures_utilities.py +775 -0
- tests/plotting/test_histograms.py +546 -0
- tests/plotting/test_integration.py +675 -0
- tests/plotting/test_orbits.py +435 -0
- tests/plotting/test_performance.py +708 -0
- tests/plotting/test_scatter.py +752 -0
- tests/plotting/test_select_data_from_figure.py +1209 -0
- tests/plotting/test_spiral.py +573 -0
- tests/plotting/test_tools.py +607 -0
- tests/plotting/test_visual_validation.py +465 -0
- tests/solar_activity/__init__.py +1 -0
- tests/solar_activity/lisird/__init__.py +1 -0
- tests/solar_activity/lisird/test_extrema_calculator.py +593 -0
- tests/solar_activity/lisird/test_lisird_id.py +187 -0
- tests/solar_activity/sunspot_number/__init__.py +1 -0
- tests/solar_activity/sunspot_number/test_init.py +399 -0
- tests/solar_activity/sunspot_number/test_sidc.py +465 -0
- tests/solar_activity/sunspot_number/test_sidc_id.py +223 -0
- tests/solar_activity/sunspot_number/test_sidc_loader.py +275 -0
- tests/solar_activity/sunspot_number/test_ssn_extrema.py +406 -0
- tests/solar_activity/test_base.py +656 -0
- tests/solar_activity/test_init.py +396 -0
- tests/solar_activity/test_plots.py +371 -0
- tests/test_circular_imports.py +408 -0
- tests/test_issue_titles.py +25 -0
- tests/test_statusline.py +298 -0
- solarwindpy-0.0.1.dev0.dist-info/METADATA +0 -14
- solarwindpy-0.0.1.dev0.dist-info/RECORD +0 -4
- solarwindpy-0.0.1.dev0.dist-info/top_level.txt +0 -1
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# Implementation Roadmap: Physics-Focused Test Suite Enhancement
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**SolarWindPy Scientific Software Quality Transformation Plan**
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## Executive Summary
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This roadmap provides a structured implementation plan for transforming SolarWindPy through the systematic enhancement identified in our comprehensive 6-phase audit. The plan prioritizes **critical vulnerability remediation** while establishing sustainable development practices for ongoing scientific software quality assurance.
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**Total Implementation Timeline**: 12-16 weeks
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**Total Effort Estimate**: 240-320 hours
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**Expected ROI**: +4.5% test coverage, elimination of physics-breaking errors, scientific credibility enhancement
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## Implementation Phases Overview
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### Phase 1: Critical Vulnerability Remediation (Weeks 1-2) - PRIORITY 1
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**Focus**: Eliminate physics-breaking calculation errors
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**Status**: IMMEDIATE ACTION REQUIRED
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**Success Criteria**: Zero tolerance for infinite/NaN results in physics calculations
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### Phase 2: Documentation & User Safety (Weeks 3-6) - PRIORITY 2
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**Focus**: Comprehensive user guidance and safety framework
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**Status**: HIGH PRIORITY - Prevent user calculation errors
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**Success Criteria**: Complete physics calculation documentation with safety warnings
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### Phase 3: Architecture & Performance (Weeks 7-9) - PRIORITY 3
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**Focus**: MultiIndex optimization and large-scale reliability
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**Status**: MEDIUM PRIORITY - Performance enhancement
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**Success Criteria**: 15-25% performance improvement with maintained accuracy
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### Phase 4: Quality Assurance & Integration (Weeks 10-12) - PRIORITY 4
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**Focus**: Long-term sustainability framework
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**Status**: LOWER PRIORITY - Systematic quality assurance
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**Success Criteria**: Automated validation and continuous improvement
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### Phase 5: Community & Educational Integration (Weeks 13-16) - OPTIONAL
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**Focus**: Scientific community engagement and adoption
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**Status**: ENHANCEMENT - Community building
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**Success Criteria**: Educational partnerships and scientific recognition
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## Detailed Implementation Plan
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## Phase 1: Critical Vulnerability Remediation (Weeks 1-2)
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### Week 1: Zero Density & Negative Energy Protection
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#### Day 1-2: Assessment & Planning (16 hours)
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**Responsibilities**: Lead Developer + Physics Expert
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**Tasks**:
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1. **Code Audit**: Complete review of all Alfvén speed calculation locations
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- Search codebase for `rho.pow(-0.5)` patterns
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- Identify all thermal speed calculation functions
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- Map dependency chain for affected modules
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2. **Impact Analysis**: Quantify affected functions and user workflows
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- Catalog all functions requiring protection
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- Estimate user workflow disruption
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- Plan backward compatibility strategies
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**Deliverables**:
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- [ ] Comprehensive vulnerability location map
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- [ ] User impact assessment report
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- [ ] Implementation priority matrix
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#### Day 3-5: Core Protection Implementation (24 hours)
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**Responsibilities**: Senior Developer + Physics Validator Agent
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**Tasks**:
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1. **Zero Density Protection Framework**:
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```python
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# Implementation in solarwindpy/core/plasma.py
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def _validate_density(density, min_threshold=1e-23):
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"""Validate plasma density for physics calculations."""
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invalid_count = np.sum(density <= min_threshold)
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raise ValueError(f"{invalid_count} density values ≤ {min_threshold} kg/m³")
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return True
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```
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2. **Negative Energy Protection Framework**:
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```python
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# Implementation in thermal calculation functions
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def _validate_thermal_energy(energy):
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"""Validate thermal energy for speed calculations."""
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if np.any(energy <= 0):
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invalid_count = np.sum(energy <= 0)
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raise ValueError(f"{invalid_count} thermal energy values ≤ 0")
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return True
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```
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**Deliverables**:
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- [ ] Zero density protection implemented in all Alfvén speed functions
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- [ ] Negative energy validation integrated in all thermal speed functions
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- [ ] Backward compatibility validation completed
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- [ ] Initial testing of protected functions
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### Week 2: Numerical Stability Test Framework
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#### Day 6-8: Test Implementation (24 hours)
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**Responsibilities**: TestEngineer Agent + NumericalStabilityGuard Agent
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**Tasks**:
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1. **Critical Vulnerability Tests** (34 tests total):
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```python
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# tests/test_numerical_stability.py
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class TestCriticalVulnerabilities:
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def test_alfven_speed_zero_density_protection(self):
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"""Test Alfvén speed rejects zero density."""
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with pytest.raises(ValueError, match="density values ≤"):
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plasma.alfven_speed(density=np.array([0.0, 1e-21]))
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def test_thermal_speed_negative_energy_protection(self):
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"""Test thermal speed rejects negative energy."""
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plasma.thermal_speed(temperature=np.array([-100, 1e5]))
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```
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2. **Edge Case Validation Tests**:
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- Minimum threshold boundary testing
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- Mixed valid/invalid parameter arrays
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- Precision preservation at boundaries
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- Performance impact measurement
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- [ ] 34 numerical stability tests implemented and passing
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- [ ] Performance regression validation
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- [ ] Test integration with existing CI/CD
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#### Day 9-10: Validation & Documentation (16 hours)
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**Responsibilities**: Physics Expert + Technical Writer
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**Tasks**:
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1. **Physics Validation**: Verify all protection frameworks maintain scientific accuracy
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2. **Performance Validation**: Ensure <5% overhead from validation
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3. **Critical Documentation**: User-facing warnings and developer guidance
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**Deliverables**:
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- [ ] Physics accuracy validation completed
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- [ ] Performance impact assessment (<5% overhead confirmed)
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- [ ] Critical vulnerability user warnings documented
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- [ ] Developer implementation guidelines published
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**Phase 1 Success Metrics**:
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- ✅ Zero incidents of infinite Alfvén speeds in production
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- ✅ Zero incidents of NaN thermal speeds in production
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- ✅ 34 numerical stability tests passing in CI/CD
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- ✅ <5% performance overhead from validation
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- ✅ Backward compatibility maintained for valid usage patterns
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## Phase 2: Documentation & User Safety (Weeks 3-6)
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### Week 3: Physics Calculation User Guide
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#### Core Physics Documentation (40 hours total)
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**Responsibilities**: Physics Expert + Technical Writer + PlottingEngineer (for examples)
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**Week 3 Tasks**:
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- Mathematical foundation: mw² = 2kT convention
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- Valid parameter ranges and physical interpretation
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- Example code with validation
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- Common pitfalls and troubleshooting
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2. **Alfvén Speed Documentation** (10 hours):
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- Physics theory: V_A = B/√(μ₀ρ) with multi-species considerations
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- Critical density threshold warnings
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- Magnetic field magnitude considerations
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- Example calculations with safety validation
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3. **Plasma Frequency Documentation** (10 hours):
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- Multi-species calculation procedures
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- Expected result ranges and validation
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4. **Vector Operation Guidelines** (10 hours):
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- Catastrophic cancellation warnings
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- Precision-preserving calculation methods
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- Mixed-scale component handling
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**Deliverables**:
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- [ ] `/docs/source/physics_guide.rst` - Complete physics calculation reference
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- [ ] Enhanced examples with validation patterns
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- [ ] Cross-references to numerical stability guide
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### Week 4: Numerical Stability User Guide
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#### User-Facing Stability Documentation (30 hours total)
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**Responsibilities**: NumericalStabilityGuard Agent + Technical Writer
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**Tasks**:
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1. **Numerical Limitations User Guide** (15 hours):
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- Floating-point precision considerations
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- Parameter range recommendations
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- Edge case recognition and handling
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- Error interpretation guidance
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2. **Parameter Validation Framework** (15 hours):
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- Systematic validation procedures for users
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- Quality checking workflows
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- Troubleshooting guide for common issues
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- Integration with data import procedures
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**Deliverables**:
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- [ ] `/docs/source/numerical_stability.rst` - Complete stability guidance
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- [ ] User validation workflow documentation
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- [ ] Troubleshooting guide with common solutions
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- [ ] Integration examples for data analysis workflows
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### Week 5: API Documentation Enhancement
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#### Enhanced Docstring Implementation (35 hours total)
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**Responsibilities**: Development Team + Documentation Specialist
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**Tasks**:
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1. **Critical Function Docstrings** (20 hours):
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```python
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def alfven_speed(self, species=None):
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"""Calculate Alfvén speeds with numerical stability protection.
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Parameters
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----------
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species : str or list, optional
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Ion species identifiers
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Returns
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-------
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pandas.DataFrame
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Alfvén speeds in m/s
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Raises
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------
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ValueError
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When density values are below numerical stability threshold (1e-23 kg/m³)
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+
.. warning::
|
|
233
|
+
Requires positive plasma density. Zero or negative density will
|
|
234
|
+
produce infinite results. Always validate density > 1e-23 kg/m³.
|
|
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|
+
|
|
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|
+
.. note::
|
|
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|
+
Uses multi-species density: ρ_total = Σ(n_i × m_i)
|
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|
+
|
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+
Examples
|
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|
+
--------
|
|
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|
+
>>> plasma = swp.Plasma.from_file('data.csv')
|
|
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|
+
>>> # Validate density before calculation
|
|
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|
+
>>> valid_density = plasma.density.sum(axis=1) > 1e-23
|
|
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|
+
>>> alfven_v = plasma.alfven_speed()[valid_density]
|
|
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|
+
"""
|
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|
+
```
|
|
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|
+
|
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248
|
+
2. **Parameter Range Documentation** (15 hours):
|
|
249
|
+
- Valid input ranges for all physics functions
|
|
250
|
+
- Expected output ranges for result validation
|
|
251
|
+
- Cross-references to physics theory
|
|
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|
+
- Links to numerical stability guidance
|
|
253
|
+
|
|
254
|
+
**Deliverables**:
|
|
255
|
+
- [ ] Enhanced docstrings for all critical physics functions
|
|
256
|
+
- [ ] Parameter range documentation integrated
|
|
257
|
+
- [ ] Sphinx documentation compilation validation
|
|
258
|
+
- [ ] API reference consistency verification
|
|
259
|
+
|
|
260
|
+
### Week 6: Tutorial & Integration Examples
|
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261
|
+
|
|
262
|
+
#### Comprehensive Example Development (25 hours total)
|
|
263
|
+
**Responsibilities**: Domain Expert + Educational Content Developer
|
|
264
|
+
|
|
265
|
+
**Tasks**:
|
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266
|
+
1. **Robust Tutorial Examples** (15 hours):
|
|
267
|
+
- Real-world solar wind analysis workflows
|
|
268
|
+
- Parameter validation integration
|
|
269
|
+
- Error handling and recovery procedures
|
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270
|
+
- Best practices demonstration
|
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271
|
+
|
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272
|
+
2. **Integration Workflow Documentation** (10 hours):
|
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273
|
+
- Multi-module calculation procedures
|
|
274
|
+
- Large-scale dataset handling
|
|
275
|
+
- Performance optimization with validation
|
|
276
|
+
- Cross-validation with literature values
|
|
277
|
+
|
|
278
|
+
**Deliverables**:
|
|
279
|
+
- [ ] Enhanced `/docs/source/tutorial/quickstart.rst` with validation examples
|
|
280
|
+
- [ ] Advanced analysis workflow documentation
|
|
281
|
+
- [ ] Error handling and recovery tutorials
|
|
282
|
+
- [ ] Performance optimization guidance with safety
|
|
283
|
+
|
|
284
|
+
**Phase 2 Success Metrics**:
|
|
285
|
+
- ✅ Complete physics calculation documentation (85%+ coverage)
|
|
286
|
+
- ✅ User safety warnings integrated throughout documentation
|
|
287
|
+
- ✅ Systematic parameter validation procedures documented
|
|
288
|
+
- ✅ Enhanced API docstrings with stability warnings deployed
|
|
289
|
+
- ✅ Tutorial examples demonstrate robust analysis practices
|
|
290
|
+
|
|
291
|
+
## Phase 3: Architecture & Performance (Weeks 7-9)
|
|
292
|
+
|
|
293
|
+
### Week 7: MultiIndex Optimization Analysis
|
|
294
|
+
|
|
295
|
+
#### Performance Profiling & Optimization Strategy (30 hours total)
|
|
296
|
+
**Responsibilities**: DataFrameArchitect Agent + Performance Engineer
|
|
297
|
+
|
|
298
|
+
**Tasks**:
|
|
299
|
+
1. **Current Performance Baseline** (15 hours):
|
|
300
|
+
- Comprehensive performance profiling of existing MultiIndex operations
|
|
301
|
+
- Memory usage analysis for large-scale datasets
|
|
302
|
+
- Query performance benchmarking
|
|
303
|
+
- Bottleneck identification in complex data access patterns
|
|
304
|
+
|
|
305
|
+
2. **Optimization Strategy Development** (15 hours):
|
|
306
|
+
- Enhanced .xs() usage patterns for complex queries
|
|
307
|
+
- Strategic indexing improvements
|
|
308
|
+
- Memory-efficient data access procedures
|
|
309
|
+
- Large-scale dataset handling optimization
|
|
310
|
+
|
|
311
|
+
**Deliverables**:
|
|
312
|
+
- [ ] Comprehensive performance baseline report
|
|
313
|
+
- [ ] MultiIndex optimization strategy document
|
|
314
|
+
- [ ] Memory efficiency improvement plan (15-25% target)
|
|
315
|
+
- [ ] Scalability enhancement roadmap
|
|
316
|
+
|
|
317
|
+
### Week 8: Implementation & Testing
|
|
318
|
+
|
|
319
|
+
#### Optimization Implementation (40 hours total)
|
|
320
|
+
**Responsibilities**: Senior Developer + DataFrameArchitect Agent
|
|
321
|
+
|
|
322
|
+
**Tasks**:
|
|
323
|
+
1. **Core Optimization Implementation** (25 hours):
|
|
324
|
+
```python
|
|
325
|
+
# Optimized data access patterns
|
|
326
|
+
def optimized_multi_level_query(data, measurement, component, species):
|
|
327
|
+
"""Efficient MultiIndex querying with minimal copying."""
|
|
328
|
+
return data.xs((measurement, component, species),
|
|
329
|
+
level=['M', 'C', 'S'], drop_level=False)
|
|
330
|
+
```
|
|
331
|
+
|
|
332
|
+
2. **Performance Monitoring Integration** (15 hours):
|
|
333
|
+
- Automated performance regression testing
|
|
334
|
+
- Memory usage monitoring
|
|
335
|
+
- Query performance benchmarking
|
|
336
|
+
- Large dataset handling validation
|
|
337
|
+
|
|
338
|
+
**Deliverables**:
|
|
339
|
+
- [ ] Optimized MultiIndex access patterns implemented
|
|
340
|
+
- [ ] Performance monitoring framework deployed
|
|
341
|
+
- [ ] Memory efficiency improvements validated (target: 15-25%)
|
|
342
|
+
- [ ] Regression testing for performance optimization
|
|
343
|
+
|
|
344
|
+
### Week 9: Integration & Validation
|
|
345
|
+
|
|
346
|
+
#### System Integration Testing (35 hours total)
|
|
347
|
+
**Responsibilities**: QA Engineer + Integration Specialist
|
|
348
|
+
|
|
349
|
+
**Tasks**:
|
|
350
|
+
1. **Integration Testing** (20 hours):
|
|
351
|
+
- Cross-module performance validation
|
|
352
|
+
- Large-scale dataset testing
|
|
353
|
+
- Memory usage validation under load
|
|
354
|
+
- Performance regression testing
|
|
355
|
+
|
|
356
|
+
2. **User Workflow Validation** (15 hours):
|
|
357
|
+
- Real-world usage pattern testing
|
|
358
|
+
- Performance impact on common workflows
|
|
359
|
+
- Backward compatibility verification
|
|
360
|
+
- User acceptance testing
|
|
361
|
+
|
|
362
|
+
**Deliverables**:
|
|
363
|
+
- [ ] Integration testing completed with 15-25% performance improvement
|
|
364
|
+
- [ ] Large-scale dataset handling validated
|
|
365
|
+
- [ ] User workflow performance improvement confirmed
|
|
366
|
+
- [ ] Architecture enhancement documentation updated
|
|
367
|
+
|
|
368
|
+
**Phase 3 Success Metrics**:
|
|
369
|
+
- ✅ 15-25% performance improvement in MultiIndex operations
|
|
370
|
+
- ✅ Memory usage optimization for large datasets
|
|
371
|
+
- ✅ Backward compatibility maintained
|
|
372
|
+
- ✅ Performance monitoring framework operational
|
|
373
|
+
- ✅ Scalability improvements validated
|
|
374
|
+
|
|
375
|
+
## Phase 4: Quality Assurance & Integration (Weeks 10-12)
|
|
376
|
+
|
|
377
|
+
### Week 10: Automated Validation Framework
|
|
378
|
+
|
|
379
|
+
#### CI/CD Integration & Automation (30 hours total)
|
|
380
|
+
**Responsibilities**: DevOps Engineer + Quality Assurance Specialist
|
|
381
|
+
|
|
382
|
+
**Tasks**:
|
|
383
|
+
1. **Continuous Validation Integration** (15 hours):
|
|
384
|
+
- Physics validation tests in CI/CD pipeline
|
|
385
|
+
- Numerical stability regression testing
|
|
386
|
+
- Performance benchmarking automation
|
|
387
|
+
- Documentation consistency checking
|
|
388
|
+
|
|
389
|
+
2. **Quality Gates Implementation** (15 hours):
|
|
390
|
+
- Pre-commit validation hooks
|
|
391
|
+
- Automated code quality checks
|
|
392
|
+
- Physics constraint validation
|
|
393
|
+
- Test coverage enforcement (95%+ requirement)
|
|
394
|
+
|
|
395
|
+
**Deliverables**:
|
|
396
|
+
- [ ] Automated physics validation in CI/CD
|
|
397
|
+
- [ ] Quality gates enforcing numerical stability standards
|
|
398
|
+
- [ ] Performance regression testing automation
|
|
399
|
+
- [ ] Documentation consistency validation
|
|
400
|
+
|
|
401
|
+
### Week 11: Scientific Review Framework
|
|
402
|
+
|
|
403
|
+
#### Expert Review Process Establishment (25 hours total)
|
|
404
|
+
**Responsibilities**: Scientific Advisory Board + Documentation Specialist
|
|
405
|
+
|
|
406
|
+
**Tasks**:
|
|
407
|
+
1. **Scientific Validation Framework** (15 hours):
|
|
408
|
+
- Expert review process for physics calculations
|
|
409
|
+
- Literature validation procedures
|
|
410
|
+
- Cross-validation with established codes
|
|
411
|
+
- Scientific accuracy assurance framework
|
|
412
|
+
|
|
413
|
+
2. **Community Integration Planning** (10 hours):
|
|
414
|
+
- User feedback collection system
|
|
415
|
+
- Scientific community engagement strategy
|
|
416
|
+
- Educational partnership development
|
|
417
|
+
- Standards development leadership planning
|
|
418
|
+
|
|
419
|
+
**Deliverables**:
|
|
420
|
+
- [ ] Scientific review framework established
|
|
421
|
+
- [ ] Expert validation procedures documented
|
|
422
|
+
- [ ] Community engagement strategy developed
|
|
423
|
+
- [ ] Educational partnership framework established
|
|
424
|
+
|
|
425
|
+
### Week 12: Final Integration & Testing
|
|
426
|
+
|
|
427
|
+
#### Comprehensive System Validation (35 hours total)
|
|
428
|
+
**Responsibilities**: Full Development Team + External Reviewers
|
|
429
|
+
|
|
430
|
+
**Tasks**:
|
|
431
|
+
1. **End-to-End Testing** (20 hours):
|
|
432
|
+
- Complete workflow testing
|
|
433
|
+
- User acceptance testing
|
|
434
|
+
- Performance validation
|
|
435
|
+
- Scientific accuracy verification
|
|
436
|
+
|
|
437
|
+
2. **Documentation Finalization** (15 hours):
|
|
438
|
+
- Complete documentation review
|
|
439
|
+
- Cross-reference validation
|
|
440
|
+
- User guide finalization
|
|
441
|
+
- Scientific accuracy verification
|
|
442
|
+
|
|
443
|
+
**Deliverables**:
|
|
444
|
+
- [ ] Complete system validation completed
|
|
445
|
+
- [ ] All documentation finalized and reviewed
|
|
446
|
+
- [ ] User acceptance criteria met
|
|
447
|
+
- [ ] Scientific accuracy verified by experts
|
|
448
|
+
|
|
449
|
+
**Phase 4 Success Metrics**:
|
|
450
|
+
- ✅ Automated quality assurance framework operational
|
|
451
|
+
- ✅ Scientific review process established
|
|
452
|
+
- ✅ 95%+ test coverage achieved
|
|
453
|
+
- ✅ Complete documentation validation
|
|
454
|
+
- ✅ Expert scientific accuracy verification
|
|
455
|
+
|
|
456
|
+
## Phase 5: Community & Educational Integration (Weeks 13-16) - OPTIONAL
|
|
457
|
+
|
|
458
|
+
### Weeks 13-14: Educational Partnerships
|
|
459
|
+
|
|
460
|
+
#### Academic Integration & Training Materials (40 hours total)
|
|
461
|
+
**Responsibilities**: Educational Content Developer + Academic Liaison
|
|
462
|
+
|
|
463
|
+
**Tasks**:
|
|
464
|
+
1. **Educational Material Development** (20 hours):
|
|
465
|
+
- Classroom integration materials
|
|
466
|
+
- Workshop curriculum development
|
|
467
|
+
- Tutorial video creation
|
|
468
|
+
- Interactive example development
|
|
469
|
+
|
|
470
|
+
2. **Academic Partnership Development** (20 hours):
|
|
471
|
+
- University collaboration establishment
|
|
472
|
+
- Research integration planning
|
|
473
|
+
- Student project frameworks
|
|
474
|
+
- Academic review and feedback integration
|
|
475
|
+
|
|
476
|
+
**Deliverables**:
|
|
477
|
+
- [ ] Educational materials for plasma physics courses
|
|
478
|
+
- [ ] Workshop curriculum and materials
|
|
479
|
+
- [ ] Academic partnership agreements
|
|
480
|
+
- [ ] Student project frameworks
|
|
481
|
+
|
|
482
|
+
### Weeks 15-16: Community Leadership & Standards Development
|
|
483
|
+
|
|
484
|
+
#### Scientific Software Standards Leadership (40 hours total)
|
|
485
|
+
**Responsibilities**: Project Leadership + Standards Committee
|
|
486
|
+
|
|
487
|
+
**Tasks**:
|
|
488
|
+
1. **Standards Development** (20 hours):
|
|
489
|
+
- Scientific Python package quality standards
|
|
490
|
+
- Numerical stability testing guidelines
|
|
491
|
+
- Physics validation best practices
|
|
492
|
+
- Community contribution frameworks
|
|
493
|
+
|
|
494
|
+
2. **Community Engagement** (20 hours):
|
|
495
|
+
- Conference presentations
|
|
496
|
+
- Scientific publication preparation
|
|
497
|
+
- Community feedback integration
|
|
498
|
+
- Long-term sustainability planning
|
|
499
|
+
|
|
500
|
+
**Deliverables**:
|
|
501
|
+
- [ ] Scientific software quality standards published
|
|
502
|
+
- [ ] Community engagement program established
|
|
503
|
+
- [ ] Conference presentations and publications
|
|
504
|
+
- [ ] Long-term sustainability framework
|
|
505
|
+
|
|
506
|
+
## Risk Management & Mitigation Strategies
|
|
507
|
+
|
|
508
|
+
### Technical Risks
|
|
509
|
+
|
|
510
|
+
#### HIGH RISK: Implementation Complexity
|
|
511
|
+
- **Risk**: Complex physics validation introduces performance overhead
|
|
512
|
+
- **Mitigation**: Staged implementation with continuous performance monitoring
|
|
513
|
+
- **Timeline Impact**: +20% contingency in Phases 1-2
|
|
514
|
+
- **Success Criteria**: <5% performance overhead maintained
|
|
515
|
+
|
|
516
|
+
#### MEDIUM RISK: User Adoption
|
|
517
|
+
- **Risk**: Enhanced validation requirements may disrupt existing workflows
|
|
518
|
+
- **Mitigation**: Comprehensive backward compatibility and migration support
|
|
519
|
+
- **Timeline Impact**: +15% contingency in Phase 2 documentation
|
|
520
|
+
- **Success Criteria**: Smooth migration for 95%+ existing users
|
|
521
|
+
|
|
522
|
+
#### LOW RISK: Resource Availability
|
|
523
|
+
- **Risk**: Specialized physics expertise availability
|
|
524
|
+
- **Mitigation**: Early expert engagement and knowledge transfer documentation
|
|
525
|
+
- **Timeline Impact**: +10% contingency across all phases
|
|
526
|
+
- **Success Criteria**: Expert review completed on schedule
|
|
527
|
+
|
|
528
|
+
### Scientific Risks
|
|
529
|
+
|
|
530
|
+
#### CRITICAL RISK: Scientific Accuracy
|
|
531
|
+
- **Risk**: Validation implementation errors could introduce physics mistakes
|
|
532
|
+
- **Mitigation**: Multi-level expert review and literature validation
|
|
533
|
+
- **Timeline Impact**: +25% time for expert review in all phases
|
|
534
|
+
- **Success Criteria**: 100% expert validation for all physics changes
|
|
535
|
+
|
|
536
|
+
#### HIGH RISK: Numerical Precision
|
|
537
|
+
- **Risk**: Validation overhead affects calculation precision
|
|
538
|
+
- **Mitigation**: Precision-preserving validation algorithms
|
|
539
|
+
- **Timeline Impact**: +15% development time for precision validation
|
|
540
|
+
- **Success Criteria**: Numerical precision maintained within 1e-12 relative error
|
|
541
|
+
|
|
542
|
+
## Resource Allocation & Staffing
|
|
543
|
+
|
|
544
|
+
### Core Team Requirements
|
|
545
|
+
|
|
546
|
+
#### Phase 1: Critical Vulnerabilities (2 weeks, 80 hours total)
|
|
547
|
+
- **Lead Developer**: 40 hours (physics implementation)
|
|
548
|
+
- **Physics Expert**: 24 hours (validation and review)
|
|
549
|
+
- **Test Engineer**: 16 hours (numerical stability tests)
|
|
550
|
+
|
|
551
|
+
#### Phase 2: Documentation & Safety (4 weeks, 130 hours total)
|
|
552
|
+
- **Technical Writer**: 60 hours (user documentation)
|
|
553
|
+
- **Physics Expert**: 40 hours (scientific content review)
|
|
554
|
+
- **Developer**: 30 hours (API documentation enhancement)
|
|
555
|
+
|
|
556
|
+
#### Phase 3: Architecture & Performance (3 weeks, 105 hours total)
|
|
557
|
+
- **Senior Developer**: 50 hours (optimization implementation)
|
|
558
|
+
- **Performance Engineer**: 30 hours (benchmarking and analysis)
|
|
559
|
+
- **QA Engineer**: 25 hours (integration testing)
|
|
560
|
+
|
|
561
|
+
#### Phase 4: Quality Assurance (3 weeks, 90 hours total)
|
|
562
|
+
- **DevOps Engineer**: 35 hours (CI/CD integration)
|
|
563
|
+
- **Quality Specialist**: 30 hours (quality framework)
|
|
564
|
+
- **Documentation Specialist**: 25 hours (final review)
|
|
565
|
+
|
|
566
|
+
#### Phase 5: Community Integration (4 weeks, 80 hours total - OPTIONAL)
|
|
567
|
+
- **Educational Developer**: 40 hours (materials development)
|
|
568
|
+
- **Community Manager**: 25 hours (partnerships)
|
|
569
|
+
- **Project Leadership**: 15 hours (standards development)
|
|
570
|
+
|
|
571
|
+
### External Resources
|
|
572
|
+
|
|
573
|
+
#### Scientific Advisory Board
|
|
574
|
+
- **Plasma Physics Expert**: Review and validation (40 hours across all phases)
|
|
575
|
+
- **Numerical Methods Specialist**: Algorithm validation (20 hours in Phases 1,3)
|
|
576
|
+
- **Scientific Software Expert**: Quality standards validation (15 hours in Phase 4)
|
|
577
|
+
|
|
578
|
+
## Success Measurement & Validation
|
|
579
|
+
|
|
580
|
+
### Quantitative Success Metrics
|
|
581
|
+
|
|
582
|
+
#### Test Coverage Improvement
|
|
583
|
+
- **Current**: 77.1% overall coverage
|
|
584
|
+
- **Target**: 95%+ overall, 90%+ numerical stability coverage
|
|
585
|
+
- **Measurement**: Automated coverage reporting in CI/CD
|
|
586
|
+
- **Timeline**: Achievement by end of Phase 3
|
|
587
|
+
|
|
588
|
+
#### Performance Metrics
|
|
589
|
+
- **MultiIndex Operations**: 15-25% performance improvement
|
|
590
|
+
- **Memory Usage**: Optimization for large datasets
|
|
591
|
+
- **Validation Overhead**: <5% impact on physics calculations
|
|
592
|
+
- **Measurement**: Automated performance regression testing
|
|
593
|
+
|
|
594
|
+
#### Documentation Quality
|
|
595
|
+
- **Physics Guidance**: 0% → 85% coverage
|
|
596
|
+
- **User Safety**: 25% → 90% coverage
|
|
597
|
+
- **Developer Framework**: 35% → 90% coverage
|
|
598
|
+
- **Measurement**: Documentation coverage analysis and expert review
|
|
599
|
+
|
|
600
|
+
### Qualitative Success Indicators
|
|
601
|
+
|
|
602
|
+
#### Scientific Community Acceptance
|
|
603
|
+
- **User Feedback**: Positive response to enhanced documentation
|
|
604
|
+
- **Publication Usage**: Adoption in peer-reviewed research
|
|
605
|
+
- **Educational Integration**: Use in academic plasma physics courses
|
|
606
|
+
- **Community Engagement**: Active contribution from scientific community
|
|
607
|
+
|
|
608
|
+
#### Long-term Sustainability
|
|
609
|
+
- **Code Quality**: Maintainable, well-documented codebase
|
|
610
|
+
- **Expert Network**: Established scientific advisory relationships
|
|
611
|
+
- **Standards Leadership**: Recognition as quality exemplar
|
|
612
|
+
- **Educational Value**: Integration in plasma physics education
|
|
613
|
+
|
|
614
|
+
## Implementation Timeline Summary
|
|
615
|
+
|
|
616
|
+
| Phase | Weeks | Hours | Priority | Key Deliverables |
|
|
617
|
+
|-------|-------|-------|----------|------------------|
|
|
618
|
+
| **1: Critical Vulnerabilities** | 1-2 | 80 | CRITICAL | Zero density protection, 34 stability tests |
|
|
619
|
+
| **2: Documentation & Safety** | 3-6 | 130 | HIGH | Physics guides, user safety framework |
|
|
620
|
+
| **3: Architecture & Performance** | 7-9 | 105 | MEDIUM | MultiIndex optimization, 15-25% improvement |
|
|
621
|
+
| **4: Quality Assurance** | 10-12 | 90 | MEDIUM | Automated validation, expert review |
|
|
622
|
+
| **5: Community Integration** | 13-16 | 80 | OPTIONAL | Educational partnerships, standards |
|
|
623
|
+
| **TOTAL CORE IMPLEMENTATION** | **12 weeks** | **405 hours** | | **Complete transformation** |
|
|
624
|
+
| **TOTAL WITH COMMUNITY** | **16 weeks** | **485 hours** | | **Full ecosystem development** |
|
|
625
|
+
|
|
626
|
+
## Next Steps & Implementation Initiation
|
|
627
|
+
|
|
628
|
+
### Immediate Actions (Next 7 Days)
|
|
629
|
+
1. **Stakeholder Approval**: Review and approval of implementation roadmap
|
|
630
|
+
2. **Resource Allocation**: Confirm team assignments and availability
|
|
631
|
+
3. **Environment Setup**: Development and testing environment preparation
|
|
632
|
+
4. **Expert Engagement**: Scientific advisory board confirmation
|
|
633
|
+
|
|
634
|
+
### Week 1 Kickoff Requirements
|
|
635
|
+
1. **Team Assembly**: Core development team and physics expert availability
|
|
636
|
+
2. **Tooling Setup**: Development environment, testing frameworks, CI/CD preparation
|
|
637
|
+
3. **Baseline Establishment**: Current performance and coverage baselines
|
|
638
|
+
4. **Communication Framework**: Progress reporting and stakeholder updates
|
|
639
|
+
|
|
640
|
+
This roadmap provides a comprehensive, actionable plan for transforming SolarWindPy into a robust scientific software platform with industry-leading quality assurance, numerical stability, and physics validation standards.
|
|
641
|
+
|
|
642
|
+
---
|
|
643
|
+
|
|
644
|
+
**Implementation Readiness**: Complete specifications and timeline established
|
|
645
|
+
**Resource Requirements**: Clearly defined team and expert requirements
|
|
646
|
+
**Success Framework**: Quantitative and qualitative metrics for validation
|
|
647
|
+
**Risk Management**: Comprehensive mitigation strategies for all identified risks
|