solarwindpy 0.0.1.dev0__py3-none-any.whl ā 0.1.1__py3-none-any.whl
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- plans/.velocity/metrics.json +96 -0
- plans/0-overview-template.md +268 -0
- plans/N-phase-template.md +106 -0
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- plans/completed/combined_plan_with_checklist_documentation/7-Maintenance.md +55 -0
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- plans/completed/combined_test_plan_with_checklist_fitfunctions/10-power_laws.md +56 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/2-core.py-FitFunction.md +118 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/3-gaussians.py-Gaussian-GaussianNormalized-GaussianLn.md +69 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/4-trend_fits.py-TrendFit.md +99 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/5-plots.py-FFPlot.md +98 -0
- plans/completed/combined_test_plan_with_checklist_fitfunctions/6-tex_info.py-TeXinfo.md +79 -0
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- plans/completed/combined_test_plan_with_checklist_plotting/8-select_data_from_figure.py.md +97 -0
- plans/completed/combined_test_plan_with_checklist_plotting/9-labels-base.py.md +88 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/.gitkeep +0 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/0-Overview.md +170 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/1-Package-Entry-Point-__init__.py.md +121 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/2-Core-Base-Classes-base.py.md +142 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/3-Plotting-Helpers-plots.py.md +123 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/4-LISIRD-Sub-package.md +119 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/5-Extrema-Calculator.md +103 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/6-Sunspot-Number-Sub-package.md +163 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/7-Sunspot-Number-Init.py.md +217 -0
- plans/completed/combined_test_plan_with_checklist_solar_activity/compacted_state.md +52 -0
- plans/completed/compaction-agent-modernization/0-Overview.md +156 -0
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- plans/completed/compaction-agent-modernization/2-Token-Baseline-Recalibration.md +153 -0
- plans/completed/compaction-agent-modernization/3-Agent-Reference-Updates.md +184 -0
- plans/completed/compaction-agent-modernization/4-Compression-Algorithm-Modernization.md +238 -0
- plans/completed/compaction-agent-modernization/5-Workflow-Integration-Streamlining.md +252 -0
- plans/completed/compaction-agent-modernization/6-Template-Structure-Optimization.md +240 -0
- plans/completed/compaction-agent-modernization/7-Integration-Testing-Validation.md +292 -0
- plans/completed/compaction-hook-enhancement/0-Overview.md +150 -0
- plans/completed/compaction-hook-enhancement/1-Token-Estimation-Enhancement.md +179 -0
- plans/completed/compaction-hook-enhancement/2-Compression-Intelligence.md +294 -0
- plans/completed/compaction-hook-enhancement/3-Git-Integration-Metadata.md +310 -0
- plans/completed/compaction-hook-enhancement/4-Session-Continuity-Features.md +358 -0
- plans/completed/compaction-hook-enhancement/5-Testing-Strategy.md +404 -0
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- plans/completed/docstring-audit-enhancement/0-Overview.md +274 -0
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- plans/completed/fitfunctions-testing-implementation/0-Overview.md +130 -0
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- solarwindpy/core/base.py +267 -0
- solarwindpy/core/ions.py +309 -0
- solarwindpy/core/plasma.py +2133 -0
- solarwindpy/core/spacecraft.py +256 -0
- solarwindpy/core/tensor.py +90 -0
- solarwindpy/core/units_constants.py +199 -0
- solarwindpy/core/vector.py +328 -0
- solarwindpy/fitfunctions/__init__.py +20 -0
- solarwindpy/fitfunctions/core.py +734 -0
- solarwindpy/fitfunctions/exponentials.py +188 -0
- solarwindpy/fitfunctions/gaussians.py +264 -0
- solarwindpy/fitfunctions/lines.py +116 -0
- solarwindpy/fitfunctions/moyal.py +71 -0
- solarwindpy/fitfunctions/plots.py +751 -0
- solarwindpy/fitfunctions/power_laws.py +209 -0
- solarwindpy/fitfunctions/tex_info.py +568 -0
- solarwindpy/fitfunctions/trend_fits.py +482 -0
- solarwindpy/instabilities/__init__.py +16 -0
- solarwindpy/instabilities/beta_ani.py +82 -0
- solarwindpy/instabilities/verscharen2016.py +631 -0
- solarwindpy/plotting/__init__.py +33 -0
- solarwindpy/plotting/agg_plot.py +489 -0
- solarwindpy/plotting/base.py +465 -0
- solarwindpy/plotting/hist1d.py +405 -0
- solarwindpy/plotting/hist2d.py +1035 -0
- solarwindpy/plotting/histograms.py +1845 -0
- solarwindpy/plotting/labels/__init__.py +104 -0
- solarwindpy/plotting/labels/base.py +686 -0
- solarwindpy/plotting/labels/chemistry.py +19 -0
- solarwindpy/plotting/labels/composition.py +100 -0
- solarwindpy/plotting/labels/datetime.py +235 -0
- solarwindpy/plotting/labels/elemental_abundance.py +73 -0
- solarwindpy/plotting/labels/special.py +794 -0
- solarwindpy/plotting/orbits.py +515 -0
- solarwindpy/plotting/scatter.py +99 -0
- solarwindpy/plotting/select_data_from_figure.py +329 -0
- solarwindpy/plotting/spiral.py +980 -0
- solarwindpy/plotting/tools.py +434 -0
- solarwindpy/scripts/__init__.py +1 -0
- solarwindpy/scripts/logs/.gitignore +1 -0
- solarwindpy/solar_activity/__init__.py +53 -0
- solarwindpy/solar_activity/base.py +605 -0
- solarwindpy/solar_activity/lisird/__init__.py +3 -0
- solarwindpy/solar_activity/lisird/extrema_calculator.py +394 -0
- solarwindpy/solar_activity/lisird/lisird.py +319 -0
- solarwindpy/solar_activity/plots.py +116 -0
- solarwindpy/solar_activity/sunspot_number/.DS_Store +0 -0
- solarwindpy/solar_activity/sunspot_number/__init__.py +3 -0
- solarwindpy/solar_activity/sunspot_number/sidc.py +556 -0
- solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv +72 -0
- solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv.silso +72 -0
- solarwindpy/tools/__init__.py +162 -0
- solarwindpy-0.1.1.dist-info/METADATA +181 -0
- solarwindpy-0.1.1.dist-info/RECORD +409 -0
- {solarwindpy-0.0.1.dev0.dist-info ā solarwindpy-0.1.1.dist-info}/WHEEL +1 -1
- solarwindpy-0.1.1.dist-info/licenses/LICENSE.rst +32 -0
- solarwindpy-0.1.1.dist-info/top_level.txt +3 -0
- tests/__init__.py +1 -0
- tests/conftest.py +10 -0
- tests/core/__init__.py +1 -0
- tests/core/test_alfvenic_turbulence.py +544 -0
- tests/core/test_base.py +112 -0
- tests/core/test_base_head_tail.py +29 -0
- tests/core/test_base_mi_tuples.py +11 -0
- tests/core/test_core_verify_datetimeindex.py +32 -0
- tests/core/test_ions.py +325 -0
- tests/core/test_plasma.py +2581 -0
- tests/core/test_plasma_io.py +12 -0
- tests/core/test_quantities.py +507 -0
- tests/core/test_spacecraft.py +210 -0
- tests/core/test_units_constants.py +22 -0
- tests/data/epoch.csv +4 -0
- tests/data/plasma.csv +4 -0
- tests/data/spacecraft.csv +4 -0
- tests/fitfunctions/conftest.py +60 -0
- tests/fitfunctions/test_core.py +193 -0
- tests/fitfunctions/test_exponentials.py +342 -0
- tests/fitfunctions/test_gaussians.py +142 -0
- tests/fitfunctions/test_lines.py +349 -0
- tests/fitfunctions/test_moyal.py +258 -0
- tests/fitfunctions/test_plots.py +258 -0
- tests/fitfunctions/test_power_laws.py +365 -0
- tests/fitfunctions/test_tex_info.py +183 -0
- tests/fitfunctions/test_trend_fit_properties.py +31 -0
- tests/fitfunctions/test_trend_fits.py +244 -0
- tests/plotting/__init__.py +1 -0
- tests/plotting/labels/__init__.py +1 -0
- tests/plotting/labels/test_chemistry.py +243 -0
- tests/plotting/labels/test_composition.py +345 -0
- tests/plotting/labels/test_datetime.py +445 -0
- tests/plotting/labels/test_elemental_abundance.py +366 -0
- tests/plotting/labels/test_init.py +66 -0
- tests/plotting/labels/test_labels_base.py +347 -0
- tests/plotting/labels/test_special.py +550 -0
- tests/plotting/test_agg_plot.py +602 -0
- tests/plotting/test_base.py +752 -0
- tests/plotting/test_fixtures_utilities.py +775 -0
- tests/plotting/test_histograms.py +546 -0
- tests/plotting/test_integration.py +675 -0
- tests/plotting/test_orbits.py +435 -0
- tests/plotting/test_performance.py +708 -0
- tests/plotting/test_scatter.py +752 -0
- tests/plotting/test_select_data_from_figure.py +1209 -0
- tests/plotting/test_spiral.py +573 -0
- tests/plotting/test_tools.py +607 -0
- tests/plotting/test_visual_validation.py +465 -0
- tests/solar_activity/__init__.py +1 -0
- tests/solar_activity/lisird/__init__.py +1 -0
- tests/solar_activity/lisird/test_extrema_calculator.py +593 -0
- tests/solar_activity/lisird/test_lisird_id.py +187 -0
- tests/solar_activity/sunspot_number/__init__.py +1 -0
- tests/solar_activity/sunspot_number/test_init.py +399 -0
- tests/solar_activity/sunspot_number/test_sidc.py +465 -0
- tests/solar_activity/sunspot_number/test_sidc_id.py +223 -0
- tests/solar_activity/sunspot_number/test_sidc_loader.py +275 -0
- tests/solar_activity/sunspot_number/test_ssn_extrema.py +406 -0
- tests/solar_activity/test_base.py +656 -0
- tests/solar_activity/test_init.py +396 -0
- tests/solar_activity/test_plots.py +371 -0
- tests/test_circular_imports.py +408 -0
- tests/test_issue_titles.py +25 -0
- tests/test_statusline.py +298 -0
- solarwindpy-0.0.1.dev0.dist-info/METADATA +0 -14
- solarwindpy-0.0.1.dev0.dist-info/RECORD +0 -4
- solarwindpy-0.0.1.dev0.dist-info/top_level.txt +0 -1
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# Phase 3: Quality Audit & ReadTheDocs Integration
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## Objective
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Audit the template-enhanced documentation system, eliminate any remaining quality issues, and implement full ReadTheDocs automation for seamless deployment on every push to master.
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## Context
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After Phase 2, the template system provides persistent, physics-aware documentation. Phase 3 ensures professional quality output and establishes automated ReadTheDocs deployment pipeline.
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## Current State Assessment
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### Template System Status
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Enhanced templates implemented
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Physics sections added to core modules
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Build system integration complete
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Post-processing framework operational
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### ReadTheDocs Infrastructure
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`.readthedocs.yaml` configuration exists
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Sphinx documentation system operational
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GitHub integration configured
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- ā ļø Need webhook validation and optimization
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## Implementation Strategy
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### Step 3.1: Post-Template Quality Audit (45 minutes)
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**Comprehensive Documentation Build Analysis**:
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```bash
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cd docs
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# Clean build with enhanced templates
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make clean
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make api-enhanced
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# Capture build warnings and errors
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make html 2>&1 | tee build-audit.log
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# Analyze Sphinx warnings
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echo "š Sphinx Build Analysis:"
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grep -c "WARNING" build-audit.log || echo "No warnings found"
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# Extract specific warning types
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echo -e "\nš Warning Details:"
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grep "WARNING" build-audit.log | sort | uniq -c | sort -nr
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```
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**Template Output Validation**:
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```bash
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# Verify physics sections appear correctly
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echo -e "\nš¬ Physics Content Audit:"
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echo "=========================="
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# Check core physics classes
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file="source/api/solarwindpy.core.${class}.rst"
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echo "š Checking $class module:"
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fi
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done
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grep -r ".. math::" source/api/ | wc -l | xargs echo "Math blocks found:"
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```
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**HTML Rendering Verification**:
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```bash
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else
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fi
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done
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# Check for broken links
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### Step 3.2: ReadTheDocs Configuration Optimization (30 minutes)
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**Enhanced `.readthedocs.yaml`**:
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```yaml
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version: 2
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build:
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os: ubuntu-22.04
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tools:
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python: "3.11"
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jobs:
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post_checkout:
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# Ensure git submodules if any
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- git submodule update --init --recursive
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post_install:
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python:
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install:
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path: .
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sphinx:
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configuration: docs/source/conf.py
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builder: html
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formats:
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search:
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ranking:
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api/*: -1
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_templates/*: -1
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**Target**: `docs/source/conf.py` additions
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```python
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on_rtd = os.environ.get('READTHEDOCS') == 'True'
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html_theme = 'sphinx_rtd_theme'
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html_context = {
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'display_github': True,
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'github_user': 'space-physics', # Update with actual GitHub org
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'github_repo': 'solarwindpy',
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'github_version': 'master',
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'conf_py_path': '/docs/source/',
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# Local development settings
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mathjax3_config = {
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'tex': {
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'inlineMath': [['$', '$'], ['\\(', '\\)']],
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'displayMath': [['$$', '$$'], ['\\[', '\\]']],
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'processEscapes': True,
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'options': {
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}
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# Enhanced intersphinx for physics packages
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intersphinx_mapping = {
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'python': ('https://docs.python.org/3/', None),
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'numpy': ('https://numpy.org/doc/stable/', None),
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'scipy': ('https://docs.scipy.org/doc/scipy/', None),
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'matplotlib': ('https://matplotlib.org/stable/', None),
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'pandas': ('https://pandas.pydata.org/docs/', None),
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'astropy': ('https://docs.astropy.org/en/stable/', None),
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}
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# API documentation settings
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autodoc_default_options = {
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'members': True,
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}
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# Enhanced autosummary settings
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autosummary_generate = True
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autosummary_generate_overwrite = True
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autosummary_imported_members = False
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# Physics-specific settings
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numfig = True
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numfig_format = {
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'figure': 'Figure %s',
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'table': 'Table %s',
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'code-block': 'Listing %s',
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'section': 'Section %s',
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}
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```
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### Step 3.3: Automated Quality Validation (45 minutes)
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**Create Documentation Quality Checker**:
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**Target**: `docs/quality_check.py`
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```python
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#!/usr/bin/env python3
|
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"""
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Comprehensive documentation quality checker for ReadTheDocs deployment.
|
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Validates template output, physics content, and build quality.
|
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"""
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import os
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import re
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import subprocess
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import sys
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from pathlib import Path
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from typing import List, Dict, Tuple, Optional
|
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238
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+
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239
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+
class DocumentationQualityChecker:
|
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240
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+
"""Comprehensive quality checker for SolarWindPy documentation."""
|
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241
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+
|
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242
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+
def __init__(self, source_dir: str = "source", build_dir: str = "_build"):
|
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+
self.source_dir = Path(source_dir)
|
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+
self.build_dir = Path(build_dir)
|
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self.api_dir = self.source_dir / "api"
|
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+
self.html_dir = self.build_dir / "html"
|
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+
|
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+
self.errors: List[str] = []
|
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+
self.warnings: List[str] = []
|
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|
+
self.quality_metrics: Dict[str, int] = {
|
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+
'total_warnings': 0,
|
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+
'physics_sections_found': 0,
|
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+
'math_expressions': 0,
|
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+
'broken_links': 0,
|
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|
+
'missing_physics_content': 0,
|
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256
|
+
'template_errors': 0,
|
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|
+
}
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258
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+
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+
def check_sphinx_warnings(self) -> bool:
|
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+
"""Check for Sphinx build warnings and errors."""
|
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+
print("š Checking Sphinx build warnings...")
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|
+
|
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263
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+
try:
|
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# Run Sphinx build and capture warnings
|
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result = subprocess.run(
|
|
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+
['sphinx-build', '-b', 'html', '-W', str(self.source_dir), str(self.html_dir)],
|
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|
+
capture_output=True, text=True, cwd=Path.cwd()
|
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+
)
|
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269
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+
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270
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+
warnings = result.stderr.count('WARNING')
|
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271
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+
errors = result.stderr.count('ERROR')
|
|
272
|
+
|
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273
|
+
self.quality_metrics['total_warnings'] = warnings
|
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|
+
|
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+
if errors > 0:
|
|
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|
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self.errors.append(f"Sphinx build failed with {errors} errors")
|
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+
return False
|
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+
|
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279
|
+
if warnings > 0:
|
|
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|
+
self.warnings.append(f"Sphinx build produced {warnings} warnings")
|
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|
+
print(f"ā ļø {warnings} warnings found in build")
|
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|
+
else:
|
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|
+
print("ā
No Sphinx warnings found")
|
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+
|
|
285
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+
return True
|
|
286
|
+
|
|
287
|
+
except Exception as e:
|
|
288
|
+
self.errors.append(f"Failed to run Sphinx build check: {e}")
|
|
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|
+
return False
|
|
290
|
+
|
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291
|
+
def check_physics_content(self) -> bool:
|
|
292
|
+
"""Validate physics-specific content in generated documentation."""
|
|
293
|
+
print("š¬ Checking physics content quality...")
|
|
294
|
+
|
|
295
|
+
physics_modules = ['plasma', 'ions', 'base']
|
|
296
|
+
required_sections = {
|
|
297
|
+
'Physical Properties': 0,
|
|
298
|
+
'Units and Dimensions': 0,
|
|
299
|
+
'Physics Overview': 0,
|
|
300
|
+
}
|
|
301
|
+
|
|
302
|
+
for module in physics_modules:
|
|
303
|
+
module_file = self.api_dir / f"solarwindpy.core.{module}.rst"
|
|
304
|
+
|
|
305
|
+
if module_file.exists():
|
|
306
|
+
with open(module_file, 'r') as f:
|
|
307
|
+
content = f.read()
|
|
308
|
+
|
|
309
|
+
for section in required_sections:
|
|
310
|
+
if section in content:
|
|
311
|
+
required_sections[section] += 1
|
|
312
|
+
self.quality_metrics['physics_sections_found'] += 1
|
|
313
|
+
|
|
314
|
+
# Check for mathematical content
|
|
315
|
+
math_inline = len(re.findall(r':math:`[^`]+`', content))
|
|
316
|
+
math_blocks = len(re.findall(r'\.\. math::', content))
|
|
317
|
+
self.quality_metrics['math_expressions'] += math_inline + math_blocks
|
|
318
|
+
else:
|
|
319
|
+
self.warnings.append(f"Physics module file not found: {module_file}")
|
|
320
|
+
|
|
321
|
+
# Validate physics content completeness
|
|
322
|
+
missing_content = 0
|
|
323
|
+
for section, count in required_sections.items():
|
|
324
|
+
if count == 0:
|
|
325
|
+
self.warnings.append(f"No '{section}' sections found across physics modules")
|
|
326
|
+
missing_content += 1
|
|
327
|
+
else:
|
|
328
|
+
print(f"ā
{section}: found in {count} modules")
|
|
329
|
+
|
|
330
|
+
self.quality_metrics['missing_physics_content'] = missing_content
|
|
331
|
+
|
|
332
|
+
if missing_content > 0:
|
|
333
|
+
print(f"ā ļø {missing_content} physics content types missing")
|
|
334
|
+
else:
|
|
335
|
+
print("ā
All physics content types found")
|
|
336
|
+
|
|
337
|
+
return missing_content == 0
|
|
338
|
+
|
|
339
|
+
def check_html_rendering(self) -> bool:
|
|
340
|
+
"""Verify HTML rendering quality."""
|
|
341
|
+
print("š Checking HTML rendering quality...")
|
|
342
|
+
|
|
343
|
+
if not self.html_dir.exists():
|
|
344
|
+
self.errors.append("HTML build directory not found")
|
|
345
|
+
return False
|
|
346
|
+
|
|
347
|
+
# Check critical HTML files exist
|
|
348
|
+
critical_files = [
|
|
349
|
+
'index.html',
|
|
350
|
+
'api/solarwindpy.core.plasma.html',
|
|
351
|
+
'api/solarwindpy.core.ions.html',
|
|
352
|
+
'api/solarwindpy.core.base.html',
|
|
353
|
+
]
|
|
354
|
+
|
|
355
|
+
missing_files = []
|
|
356
|
+
for file_path in critical_files:
|
|
357
|
+
full_path = self.html_dir / file_path
|
|
358
|
+
if not full_path.exists():
|
|
359
|
+
missing_files.append(file_path)
|
|
360
|
+
|
|
361
|
+
if missing_files:
|
|
362
|
+
self.errors.append(f"Missing critical HTML files: {missing_files}")
|
|
363
|
+
return False
|
|
364
|
+
|
|
365
|
+
# Check physics content renders in HTML
|
|
366
|
+
physics_in_html = 0
|
|
367
|
+
for module in ['plasma', 'ions', 'base']:
|
|
368
|
+
html_file = self.html_dir / f"api/solarwindpy.core.{module}.html"
|
|
369
|
+
if html_file.exists():
|
|
370
|
+
with open(html_file, 'r') as f:
|
|
371
|
+
html_content = f.read()
|
|
372
|
+
|
|
373
|
+
if 'Physical Properties' in html_content:
|
|
374
|
+
physics_in_html += 1
|
|
375
|
+
print(f"ā
Physics content found in {module} HTML")
|
|
376
|
+
else:
|
|
377
|
+
self.warnings.append(f"Physics content missing from {module} HTML")
|
|
378
|
+
|
|
379
|
+
print(f"š Physics content in HTML: {physics_in_html}/3 modules")
|
|
380
|
+
return physics_in_html >= 2 # Allow for some flexibility
|
|
381
|
+
|
|
382
|
+
def check_cross_references(self) -> bool:
|
|
383
|
+
"""Check for broken cross-references and links."""
|
|
384
|
+
print("š Checking cross-references and links...")
|
|
385
|
+
|
|
386
|
+
try:
|
|
387
|
+
# Run Sphinx linkcheck
|
|
388
|
+
result = subprocess.run(
|
|
389
|
+
['sphinx-build', '-b', 'linkcheck', str(self.source_dir), str(self.build_dir / 'linkcheck')],
|
|
390
|
+
capture_output=True, text=True, cwd=Path.cwd()
|
|
391
|
+
)
|
|
392
|
+
|
|
393
|
+
# Count broken links
|
|
394
|
+
broken_links = result.stdout.count('broken')
|
|
395
|
+
redirected_links = result.stdout.count('redirected')
|
|
396
|
+
|
|
397
|
+
self.quality_metrics['broken_links'] = broken_links
|
|
398
|
+
|
|
399
|
+
if broken_links > 0:
|
|
400
|
+
self.warnings.append(f"Found {broken_links} broken links")
|
|
401
|
+
print(f"ā ļø {broken_links} broken links found")
|
|
402
|
+
else:
|
|
403
|
+
print("ā
No broken links found")
|
|
404
|
+
|
|
405
|
+
if redirected_links > 0:
|
|
406
|
+
print(f"ā¹ļø {redirected_links} redirected links (may need updating)")
|
|
407
|
+
|
|
408
|
+
return broken_links == 0
|
|
409
|
+
|
|
410
|
+
except Exception as e:
|
|
411
|
+
self.warnings.append(f"Could not run link check: {e}")
|
|
412
|
+
return True # Don't fail on linkcheck issues
|
|
413
|
+
|
|
414
|
+
def run_comprehensive_check(self) -> bool:
|
|
415
|
+
"""Run all quality checks and return overall status."""
|
|
416
|
+
print("š Starting comprehensive documentation quality check...")
|
|
417
|
+
print("=" * 60)
|
|
418
|
+
|
|
419
|
+
checks = [
|
|
420
|
+
("Sphinx Warnings", self.check_sphinx_warnings),
|
|
421
|
+
("Physics Content", self.check_physics_content),
|
|
422
|
+
("HTML Rendering", self.check_html_rendering),
|
|
423
|
+
("Cross References", self.check_cross_references),
|
|
424
|
+
]
|
|
425
|
+
|
|
426
|
+
passed_checks = 0
|
|
427
|
+
total_checks = len(checks)
|
|
428
|
+
|
|
429
|
+
for check_name, check_function in checks:
|
|
430
|
+
print(f"\nš Running {check_name} check...")
|
|
431
|
+
try:
|
|
432
|
+
if check_function():
|
|
433
|
+
print(f"ā
{check_name} check passed")
|
|
434
|
+
passed_checks += 1
|
|
435
|
+
else:
|
|
436
|
+
print(f"ā {check_name} check failed")
|
|
437
|
+
except Exception as e:
|
|
438
|
+
print(f"š„ {check_name} check crashed: {e}")
|
|
439
|
+
self.errors.append(f"{check_name} check failed with exception: {e}")
|
|
440
|
+
|
|
441
|
+
self.print_summary(passed_checks, total_checks)
|
|
442
|
+
|
|
443
|
+
# Return True if most checks passed
|
|
444
|
+
return passed_checks >= (total_checks - 1) # Allow one failure
|
|
445
|
+
|
|
446
|
+
def print_summary(self, passed_checks: int, total_checks: int) -> None:
|
|
447
|
+
"""Print comprehensive quality summary."""
|
|
448
|
+
print("\n" + "=" * 60)
|
|
449
|
+
print("š DOCUMENTATION QUALITY SUMMARY")
|
|
450
|
+
print("=" * 60)
|
|
451
|
+
|
|
452
|
+
print(f"š Overall Score: {passed_checks}/{total_checks} checks passed")
|
|
453
|
+
|
|
454
|
+
print(f"\nš Quality Metrics:")
|
|
455
|
+
print(f" ⢠Sphinx warnings: {self.quality_metrics['total_warnings']}")
|
|
456
|
+
print(f" ⢠Physics sections found: {self.quality_metrics['physics_sections_found']}")
|
|
457
|
+
print(f" ⢠Math expressions: {self.quality_metrics['math_expressions']}")
|
|
458
|
+
print(f" ⢠Broken links: {self.quality_metrics['broken_links']}")
|
|
459
|
+
print(f" ⢠Missing physics content types: {self.quality_metrics['missing_physics_content']}")
|
|
460
|
+
|
|
461
|
+
if self.warnings:
|
|
462
|
+
print(f"\nā ļø Warnings ({len(self.warnings)}):")
|
|
463
|
+
for warning in self.warnings:
|
|
464
|
+
print(f" ⢠{warning}")
|
|
465
|
+
|
|
466
|
+
if self.errors:
|
|
467
|
+
print(f"\nā Errors ({len(self.errors)}):")
|
|
468
|
+
for error in self.errors:
|
|
469
|
+
print(f" ⢠{error}")
|
|
470
|
+
|
|
471
|
+
# Quality assessment
|
|
472
|
+
if passed_checks == total_checks:
|
|
473
|
+
print(f"\nš EXCELLENT: All quality checks passed!")
|
|
474
|
+
print(" Documentation is ready for ReadTheDocs deployment.")
|
|
475
|
+
elif passed_checks >= total_checks - 1:
|
|
476
|
+
print(f"\nā
GOOD: {passed_checks}/{total_checks} checks passed.")
|
|
477
|
+
print(" Documentation quality is acceptable for deployment.")
|
|
478
|
+
else:
|
|
479
|
+
print(f"\nā ļø NEEDS WORK: Only {passed_checks}/{total_checks} checks passed.")
|
|
480
|
+
print(" Address issues before ReadTheDocs deployment.")
|
|
481
|
+
|
|
482
|
+
def main():
|
|
483
|
+
"""Main quality check execution."""
|
|
484
|
+
checker = DocumentationQualityChecker()
|
|
485
|
+
|
|
486
|
+
success = checker.run_comprehensive_check()
|
|
487
|
+
|
|
488
|
+
if success:
|
|
489
|
+
print("\nš Documentation ready for ReadTheDocs deployment!")
|
|
490
|
+
return 0
|
|
491
|
+
else:
|
|
492
|
+
print("\nš§ Documentation needs quality improvements before deployment.")
|
|
493
|
+
return 1
|
|
494
|
+
|
|
495
|
+
if __name__ == "__main__":
|
|
496
|
+
sys.exit(main())
|
|
497
|
+
```
|
|
498
|
+
|
|
499
|
+
### Step 3.4: ReadTheDocs Webhook Configuration (15 minutes)
|
|
500
|
+
|
|
501
|
+
**GitHub Webhook Verification**:
|
|
502
|
+
```bash
|
|
503
|
+
# Check if ReadTheDocs webhook is configured
|
|
504
|
+
echo "š Checking ReadTheDocs integration..."
|
|
505
|
+
|
|
506
|
+
# Verify .readthedocs.yaml is in repository root
|
|
507
|
+
if [ -f ".readthedocs.yaml" ]; then
|
|
508
|
+
echo "ā
.readthedocs.yaml found"
|
|
509
|
+
cat .readthedocs.yaml
|
|
510
|
+
else
|
|
511
|
+
echo "ā .readthedocs.yaml not found"
|
|
512
|
+
fi
|
|
513
|
+
|
|
514
|
+
# Check GitHub repository settings (manual verification needed)
|
|
515
|
+
echo -e "\nš Manual verification needed:"
|
|
516
|
+
echo "1. Go to GitHub repository Settings > Webhooks"
|
|
517
|
+
echo "2. Verify ReadTheDocs webhook is present and active"
|
|
518
|
+
echo "3. Check webhook URL points to docs.readthedocs.io"
|
|
519
|
+
echo "4. Verify webhook triggers on push events"
|
|
520
|
+
```
|
|
521
|
+
|
|
522
|
+
**ReadTheDocs Project Settings**:
|
|
523
|
+
```bash
|
|
524
|
+
# Document required ReadTheDocs project settings
|
|
525
|
+
cat > readthedocs-settings.md << 'EOF'
|
|
526
|
+
# ReadTheDocs Project Configuration
|
|
527
|
+
|
|
528
|
+
## Project Settings
|
|
529
|
+
- **Name**: solarwindpy
|
|
530
|
+
- **Repository URL**: https://github.com/space-physics/solarwindpy
|
|
531
|
+
- **Branch**: master
|
|
532
|
+
- **Documentation Type**: Sphinx HTML
|
|
533
|
+
|
|
534
|
+
## Advanced Settings
|
|
535
|
+
- **Install Project**: Yes
|
|
536
|
+
- **Requirements File**: requirements.txt
|
|
537
|
+
- **Python Version**: 3.11
|
|
538
|
+
- **Sphinx Configuration**: docs/source/conf.py
|
|
539
|
+
|
|
540
|
+
## Build Environment
|
|
541
|
+
- **Build OS**: Ubuntu 22.04
|
|
542
|
+
- **Python**: 3.11
|
|
543
|
+
- **Additional Requirements**: docs/requirements.txt
|
|
544
|
+
|
|
545
|
+
## Webhook Configuration
|
|
546
|
+
- **Trigger**: Push to master branch
|
|
547
|
+
- **Format**: JSON
|
|
548
|
+
- **Events**: Repository push
|
|
549
|
+
EOF
|
|
550
|
+
|
|
551
|
+
echo "š ReadTheDocs configuration documented in readthedocs-settings.md"
|
|
552
|
+
```
|
|
553
|
+
|
|
554
|
+
### Step 3.5: Automated Deployment Testing (30 minutes)
|
|
555
|
+
|
|
556
|
+
**End-to-End Deployment Test**:
|
|
557
|
+
```bash
|
|
558
|
+
# Simulate ReadTheDocs build locally
|
|
559
|
+
echo "š§Ŗ Testing ReadTheDocs deployment simulation..."
|
|
560
|
+
|
|
561
|
+
# Clean environment test
|
|
562
|
+
cd docs
|
|
563
|
+
rm -rf _build/
|
|
564
|
+
|
|
565
|
+
# Run quality check
|
|
566
|
+
python quality_check.py
|
|
567
|
+
|
|
568
|
+
# Simulate ReadTheDocs build process
|
|
569
|
+
echo -e "\nšļø Simulating ReadTheDocs build process..."
|
|
570
|
+
|
|
571
|
+
# Step 1: Template validation
|
|
572
|
+
python validate_templates.py
|
|
573
|
+
|
|
574
|
+
# Step 2: API generation with enhanced templates
|
|
575
|
+
make api-enhanced
|
|
576
|
+
|
|
577
|
+
# Step 3: Full HTML build
|
|
578
|
+
make html
|
|
579
|
+
|
|
580
|
+
# Step 4: Final quality verification
|
|
581
|
+
python quality_check.py
|
|
582
|
+
|
|
583
|
+
echo -e "\nā
ReadTheDocs simulation complete"
|
|
584
|
+
echo "Check _build/html/index.html for final output"
|
|
585
|
+
```
|
|
586
|
+
|
|
587
|
+
**Deployment Verification Script**:
|
|
588
|
+
|
|
589
|
+
**Target**: `docs/verify_deployment.py`
|
|
590
|
+
|
|
591
|
+
```python
|
|
592
|
+
#!/usr/bin/env python3
|
|
593
|
+
"""
|
|
594
|
+
Verify ReadTheDocs deployment readiness.
|
|
595
|
+
Final validation before automated deployment.
|
|
596
|
+
"""
|
|
597
|
+
|
|
598
|
+
import os
|
|
599
|
+
import subprocess
|
|
600
|
+
import sys
|
|
601
|
+
from pathlib import Path
|
|
602
|
+
|
|
603
|
+
def verify_files_exist():
|
|
604
|
+
"""Verify all required files exist."""
|
|
605
|
+
required_files = [
|
|
606
|
+
'.readthedocs.yaml',
|
|
607
|
+
'docs/source/conf.py',
|
|
608
|
+
'docs/requirements.txt',
|
|
609
|
+
'requirements.txt',
|
|
610
|
+
'docs/validate_templates.py',
|
|
611
|
+
'docs/quality_check.py',
|
|
612
|
+
]
|
|
613
|
+
|
|
614
|
+
missing = []
|
|
615
|
+
for file_path in required_files:
|
|
616
|
+
if not Path(file_path).exists():
|
|
617
|
+
missing.append(file_path)
|
|
618
|
+
|
|
619
|
+
if missing:
|
|
620
|
+
print(f"ā Missing required files: {missing}")
|
|
621
|
+
return False
|
|
622
|
+
|
|
623
|
+
print("ā
All required files present")
|
|
624
|
+
return True
|
|
625
|
+
|
|
626
|
+
def verify_build_process():
|
|
627
|
+
"""Verify complete build process works."""
|
|
628
|
+
try:
|
|
629
|
+
os.chdir('docs')
|
|
630
|
+
|
|
631
|
+
# Clean build
|
|
632
|
+
subprocess.run(['make', 'clean'], check=True)
|
|
633
|
+
|
|
634
|
+
# Enhanced API generation
|
|
635
|
+
subprocess.run(['make', 'api-enhanced'], check=True)
|
|
636
|
+
|
|
637
|
+
# HTML build
|
|
638
|
+
subprocess.run(['make', 'html'], check=True)
|
|
639
|
+
|
|
640
|
+
print("ā
Build process verification successful")
|
|
641
|
+
return True
|
|
642
|
+
|
|
643
|
+
except subprocess.CalledProcessError as e:
|
|
644
|
+
print(f"ā Build process failed: {e}")
|
|
645
|
+
return False
|
|
646
|
+
|
|
647
|
+
def verify_readthedocs_config():
|
|
648
|
+
"""Verify ReadTheDocs configuration."""
|
|
649
|
+
config_file = Path('.readthedocs.yaml')
|
|
650
|
+
|
|
651
|
+
if not config_file.exists():
|
|
652
|
+
print("ā .readthedocs.yaml not found")
|
|
653
|
+
return False
|
|
654
|
+
|
|
655
|
+
with open(config_file, 'r') as f:
|
|
656
|
+
config_content = f.read()
|
|
657
|
+
|
|
658
|
+
required_elements = [
|
|
659
|
+
'version: 2',
|
|
660
|
+
'python: "3.11"',
|
|
661
|
+
'sphinx:',
|
|
662
|
+
'configuration: docs/source/conf.py',
|
|
663
|
+
]
|
|
664
|
+
|
|
665
|
+
missing_elements = []
|
|
666
|
+
for element in required_elements:
|
|
667
|
+
if element not in config_content:
|
|
668
|
+
missing_elements.append(element)
|
|
669
|
+
|
|
670
|
+
if missing_elements:
|
|
671
|
+
print(f"ā Missing ReadTheDocs config elements: {missing_elements}")
|
|
672
|
+
return False
|
|
673
|
+
|
|
674
|
+
print("ā
ReadTheDocs configuration valid")
|
|
675
|
+
return True
|
|
676
|
+
|
|
677
|
+
def main():
|
|
678
|
+
"""Main deployment verification."""
|
|
679
|
+
print("š Verifying ReadTheDocs deployment readiness...")
|
|
680
|
+
print("=" * 50)
|
|
681
|
+
|
|
682
|
+
checks = [
|
|
683
|
+
("Required Files", verify_files_exist),
|
|
684
|
+
("ReadTheDocs Config", verify_readthedocs_config),
|
|
685
|
+
("Build Process", verify_build_process),
|
|
686
|
+
]
|
|
687
|
+
|
|
688
|
+
passed = 0
|
|
689
|
+
for check_name, check_func in checks:
|
|
690
|
+
print(f"\nš {check_name}...")
|
|
691
|
+
if check_func():
|
|
692
|
+
passed += 1
|
|
693
|
+
else:
|
|
694
|
+
print(f"š„ {check_name} failed")
|
|
695
|
+
|
|
696
|
+
print(f"\nš Verification Summary: {passed}/{len(checks)} checks passed")
|
|
697
|
+
|
|
698
|
+
if passed == len(checks):
|
|
699
|
+
print("š ReadTheDocs deployment ready!")
|
|
700
|
+
return 0
|
|
701
|
+
else:
|
|
702
|
+
print("š§ Fix issues before deployment")
|
|
703
|
+
return 1
|
|
704
|
+
|
|
705
|
+
if __name__ == "__main__":
|
|
706
|
+
sys.exit(main())
|
|
707
|
+
```
|
|
708
|
+
|
|
709
|
+
## Phase Completion
|
|
710
|
+
|
|
711
|
+
### Commit Changes
|
|
712
|
+
```bash
|
|
713
|
+
# Add all quality and integration enhancements
|
|
714
|
+
git add .readthedocs.yaml \
|
|
715
|
+
docs/source/conf.py \
|
|
716
|
+
docs/quality_check.py \
|
|
717
|
+
docs/verify_deployment.py \
|
|
718
|
+
docs/readthedocs-settings.md
|
|
719
|
+
|
|
720
|
+
# Commit ReadTheDocs integration
|
|
721
|
+
git commit -m "feat: complete ReadTheDocs automation integration
|
|
722
|
+
|
|
723
|
+
Quality Assurance:
|
|
724
|
+
- Added comprehensive documentation quality checker
|
|
725
|
+
- Implemented physics content validation
|
|
726
|
+
- Added HTML rendering verification
|
|
727
|
+
- Created cross-reference link checking
|
|
728
|
+
|
|
729
|
+
ReadTheDocs Integration:
|
|
730
|
+
- Enhanced .readthedocs.yaml configuration
|
|
731
|
+
- Optimized Sphinx configuration for RTD
|
|
732
|
+
- Added deployment verification scripts
|
|
733
|
+
- Documented RTD project settings
|
|
734
|
+
|
|
735
|
+
Automation Features:
|
|
736
|
+
- End-to-end build testing
|
|
737
|
+
- Quality metrics and reporting
|
|
738
|
+
- Automated deployment readiness checks
|
|
739
|
+
- Physics-aware content validation
|
|
740
|
+
|
|
741
|
+
Phase 3 of ReadTheDocs automation: Professional quality assurance
|
|
742
|
+
and automated deployment pipeline established."
|
|
743
|
+
```
|
|
744
|
+
|
|
745
|
+
### Create Phase Boundary Compaction
|
|
746
|
+
```bash
|
|
747
|
+
# Create compaction for phase transition
|
|
748
|
+
python .claude/hooks/create-compaction.py
|
|
749
|
+
```
|
|
750
|
+
|
|
751
|
+
This creates git tag: `claude/compaction/readthedocs-phase-3`
|
|
752
|
+
|
|
753
|
+
## Success Criteria
|
|
754
|
+
|
|
755
|
+
### Quality Assurance
|
|
756
|
+
- [ ] Zero or minimal Sphinx warnings
|
|
757
|
+
- [ ] Physics content renders correctly in HTML
|
|
758
|
+
- [ ] Mathematical expressions display properly
|
|
759
|
+
- [ ] Cross-references work correctly
|
|
760
|
+
- [ ] Professional documentation quality achieved
|
|
761
|
+
|
|
762
|
+
### ReadTheDocs Integration
|
|
763
|
+
- [ ] `.readthedocs.yaml` optimized for SolarWindPy
|
|
764
|
+
- [ ] Sphinx configuration ReadTheDocs-compatible
|
|
765
|
+
- [ ] Webhook configuration verified
|
|
766
|
+
- [ ] Automated build process functional
|
|
767
|
+
- [ ] Quality checks integrated into deployment
|
|
768
|
+
|
|
769
|
+
### Automation Verification
|
|
770
|
+
- [ ] Local ReadTheDocs simulation successful
|
|
771
|
+
- [ ] Quality checker passes all tests
|
|
772
|
+
- [ ] Deployment verification succeeds
|
|
773
|
+
- [ ] Physics-aware content validated
|
|
774
|
+
- [ ] Professional output standards met
|
|
775
|
+
|
|
776
|
+
## Expected Results
|
|
777
|
+
|
|
778
|
+
### Documentation Quality
|
|
779
|
+
- **Professional Output**: Publication-ready documentation
|
|
780
|
+
- **Physics Accuracy**: Scientific content properly rendered
|
|
781
|
+
- **Mathematical Content**: Equations and expressions display correctly
|
|
782
|
+
- **Cross-References**: All internal links functional
|
|
783
|
+
- **Consistent Styling**: Uniform presentation across all modules
|
|
784
|
+
|
|
785
|
+
### Automation Pipeline
|
|
786
|
+
- **Push-to-Deploy**: Master branch pushes trigger ReadTheDocs builds
|
|
787
|
+
- **Quality Assurance**: Automated validation prevents deployment issues
|
|
788
|
+
- **Physics Validation**: Scientific content automatically verified
|
|
789
|
+
- **Error Prevention**: Quality checks catch issues before deployment
|
|
790
|
+
- **Monitoring**: Comprehensive metrics and reporting
|
|
791
|
+
|
|
792
|
+
### Developer Experience
|
|
793
|
+
- **Zero Maintenance**: No manual documentation updates needed
|
|
794
|
+
- **Immediate Feedback**: Quality issues identified quickly
|
|
795
|
+
- **Professional Results**: High-quality output without manual work
|
|
796
|
+
- **Confidence**: Automated validation ensures reliability
|
|
797
|
+
- **Scalability**: System grows with project automatically
|
|
798
|
+
|
|
799
|
+
## ReadTheDocs Deployment Process
|
|
800
|
+
|
|
801
|
+
### Automated Workflow
|
|
802
|
+
1. **Developer Push** ā GitHub master branch
|
|
803
|
+
2. **GitHub Webhook** ā Triggers ReadTheDocs build
|
|
804
|
+
3. **ReadTheDocs Build**:
|
|
805
|
+
- Checkout repository
|
|
806
|
+
- Setup Python 3.11 environment
|
|
807
|
+
- Install requirements (requirements.txt + docs/requirements.txt)
|
|
808
|
+
- Validate templates (pre-build hook)
|
|
809
|
+
- Generate API docs with enhanced templates
|
|
810
|
+
- Build HTML with Sphinx
|
|
811
|
+
- Deploy to docs.readthedocs.io
|
|
812
|
+
4. **Quality Validation** ā Automated checks ensure quality
|
|
813
|
+
5. **Live Documentation** ā Updated docs available immediately
|
|
814
|
+
|
|
815
|
+
### Monitoring and Maintenance
|
|
816
|
+
- **Build Status**: ReadTheDocs dashboard shows build success/failure
|
|
817
|
+
- **Quality Metrics**: Automated quality reports
|
|
818
|
+
- **Physics Validation**: Scientific content automatically verified
|
|
819
|
+
- **Template Persistence**: All customizations maintained across builds
|
|
820
|
+
|
|
821
|
+
## Next Phase Preparation
|
|
822
|
+
|
|
823
|
+
Phase 3 completes the technical ReadTheDocs automation. Phase 4 will:
|
|
824
|
+
1. **Audit existing plans** - Determine what work remains
|
|
825
|
+
2. **Consolidate documentation efforts** - Single source of truth
|
|
826
|
+
3. **Archive superseded plans** - Clean project state
|
|
827
|
+
4. **Create follow-up plan** - If any significant work remains
|
|
828
|
+
|
|
829
|
+
The ReadTheDocs automation is now fully functional, providing automated, high-quality, physics-aware documentation deployment.
|
|
830
|
+
|
|
831
|
+
---
|
|
832
|
+
|
|
833
|
+
## Time and Impact Summary
|
|
834
|
+
|
|
835
|
+
| Component | Duration | Complexity | Impact |
|
|
836
|
+
|-----------|----------|------------|---------|
|
|
837
|
+
| Post-template audit | 45 min | Medium | Quality assurance |
|
|
838
|
+
| ReadTheDocs optimization | 30 min | Low-Medium | Deployment readiness |
|
|
839
|
+
| Quality validation framework | 45 min | Medium-High | Automated QA |
|
|
840
|
+
| Webhook configuration | 15 min | Low | Automation setup |
|
|
841
|
+
| Deployment testing | 30 min | Medium | Verification |
|
|
842
|
+
| **Total Phase 3** | **2.75 hours** | **Medium** | **Production-ready automation** |
|
|
843
|
+
|
|
844
|
+
**Strategic Achievement**: Transforms SolarWindPy documentation from manual maintenance to fully automated, professional-quality, physics-aware deployment pipeline with ReadTheDocs integration.
|