solarwindpy 0.0.1.dev0__py3-none-any.whl โ†’ 0.1.0__py3-none-any.whl

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  1. plans/.velocity/metrics.json +96 -0
  2. plans/0-overview-template.md +268 -0
  3. plans/N-phase-template.md +106 -0
  4. plans/PLAN_AUDIT_SUMMARY.md +173 -0
  5. plans/TEMPLATE-USAGE-GUIDE.md +198 -0
  6. plans/__init__.py +1 -0
  7. plans/abandoned/compaction-agent-system/0-Overview.md +123 -0
  8. plans/abandoned/compaction-agent-system/agents-index-update-plan.md +109 -0
  9. plans/abandoned/compaction-agent-system/compacted_state.md +85 -0
  10. plans/abandoned/compaction-agent-system/implementation-plan.md +107 -0
  11. plans/abandoned/compaction-agent-system/system-validation-report.md +159 -0
  12. plans/abandoned/compaction-agent-system/usage-guide.md +210 -0
  13. plans/abandoned/hook-system-enhancement/0-Overview.md +214 -0
  14. plans/abandoned/hook-system-enhancement/1-Phase1-Core-Infrastructure.md +313 -0
  15. plans/abandoned/hook-system-enhancement/2-Phase2-Intelligent-Testing.md +385 -0
  16. plans/abandoned/hook-system-enhancement/3-Phase3-Physics-Validation.md +444 -0
  17. plans/abandoned/hook-system-enhancement/4-Phase4-Performance-Monitoring.md +458 -0
  18. plans/abandoned/hook-system-enhancement/5-Phase5-Developer-Experience.md +532 -0
  19. plans/abandoned/hook-system-enhancement/6-Implementation-Timeline.md +274 -0
  20. plans/abandoned/hook-system-enhancement/7-Risk-Management.md +376 -0
  21. plans/abandoned/hook-system-enhancement/8-Testing-Strategy.md +579 -0
  22. plans/abandoned/readthedocs-automation/0-Overview.md +247 -0
  23. plans/abandoned/readthedocs-automation/1-Emergency-Documentation-Fixes.md +270 -0
  24. plans/abandoned/readthedocs-automation/2-Template-System-Enhancement.md +811 -0
  25. plans/abandoned/readthedocs-automation/3-Quality-Audit-ReadTheDocs-Integration.md +844 -0
  26. plans/abandoned/readthedocs-automation/4-Plan-Consolidation-Cleanup.md +632 -0
  27. plans/abandoned/readthedocs-automation/9-Closeout.md +207 -0
  28. plans/abandoned/readthedocs-automation/ABANDONMENT_REASON.md +72 -0
  29. plans/cicd-architecture-redesign/0-Overview.md +193 -0
  30. plans/cicd-architecture-redesign/1-Workflow-Creation.md +103 -0
  31. plans/cicd-architecture-redesign/2-Version-Detection.md +123 -0
  32. plans/cicd-architecture-redesign/3-Deployment-Gates.md +169 -0
  33. plans/cicd-architecture-redesign/4-RC-Testing.md +194 -0
  34. plans/cicd-architecture-redesign/5-TestPyPI-Validation.md +264 -0
  35. plans/cicd-architecture-redesign/6-Production-Release.md +263 -0
  36. plans/cicd-architecture-redesign/7-Cleanup.md +243 -0
  37. plans/cicd-architecture-redesign/8-Documentation.md +285 -0
  38. plans/cicd-architecture-redesign/Closeout.md +225 -0
  39. plans/closeout-template.md +259 -0
  40. plans/completed/circular-import-audit/0-Overview.md +152 -0
  41. plans/completed/circular-import-audit/1-Static-Dependency-Analysis.md +62 -0
  42. plans/completed/circular-import-audit/2-Dynamic-Import-Testing.md +56 -0
  43. plans/completed/circular-import-audit/3-Performance-Impact-Assessment.md +56 -0
  44. plans/completed/circular-import-audit/4-Issue-Remediation.md +78 -0
  45. plans/completed/circular-import-audit/5-Preventive-Infrastructure.md +89 -0
  46. plans/completed/claude-settings-ecosystem-alignment/0-Overview.md +162 -0
  47. plans/completed/claude-settings-ecosystem-alignment/1-Security-Foundation.md +148 -0
  48. plans/completed/claude-settings-ecosystem-alignment/2-Hook-Integration.md +158 -0
  49. plans/completed/claude-settings-ecosystem-alignment/3-Agent-System-Integration.md +177 -0
  50. plans/completed/claude-settings-ecosystem-alignment/4-Enhanced-Workflow-Automation.md +159 -0
  51. plans/completed/claude-settings-ecosystem-alignment/5-Validation-Monitoring.md +181 -0
  52. plans/completed/claude-settings-ecosystem-alignment/compacted_session_state.md +290 -0
  53. plans/completed/combined_plan_with_checklist_documentation/1-Overview-and-Goals.md +51 -0
  54. plans/completed/combined_plan_with_checklist_documentation/2-Toolchain-and-Hosting.md +69 -0
  55. plans/completed/combined_plan_with_checklist_documentation/3-Repository-Structure.md +61 -0
  56. plans/completed/combined_plan_with_checklist_documentation/4-Configuration-and-Standards.md +70 -0
  57. plans/completed/combined_plan_with_checklist_documentation/5-Documentation-Content.md +62 -0
  58. plans/completed/combined_plan_with_checklist_documentation/6-CI-CD-and-Validation.md +58 -0
  59. plans/completed/combined_plan_with_checklist_documentation/7-Maintenance.md +55 -0
  60. plans/completed/combined_test_plan_with_checklist_fitfunctions/0-Overview.md +135 -0
  61. plans/completed/combined_test_plan_with_checklist_fitfunctions/1-Common-fixtures.md +59 -0
  62. plans/completed/combined_test_plan_with_checklist_fitfunctions/10-power_laws.md +56 -0
  63. plans/completed/combined_test_plan_with_checklist_fitfunctions/2-core.py-FitFunction.md +118 -0
  64. plans/completed/combined_test_plan_with_checklist_fitfunctions/3-gaussians.py-Gaussian-GaussianNormalized-GaussianLn.md +69 -0
  65. plans/completed/combined_test_plan_with_checklist_fitfunctions/4-trend_fits.py-TrendFit.md +99 -0
  66. plans/completed/combined_test_plan_with_checklist_fitfunctions/5-plots.py-FFPlot.md +98 -0
  67. plans/completed/combined_test_plan_with_checklist_fitfunctions/6-tex_info.py-TeXinfo.md +79 -0
  68. plans/completed/combined_test_plan_with_checklist_fitfunctions/7-Justification.md +49 -0
  69. plans/completed/combined_test_plan_with_checklist_fitfunctions/8-exponentials.md +64 -0
  70. plans/completed/combined_test_plan_with_checklist_fitfunctions/9-lines.md +58 -0
  71. plans/completed/combined_test_plan_with_checklist_plotting/0-Overview.md +142 -0
  72. plans/completed/combined_test_plan_with_checklist_plotting/1-base.py.md +90 -0
  73. plans/completed/combined_test_plan_with_checklist_plotting/10-labels-special.py.md +102 -0
  74. plans/completed/combined_test_plan_with_checklist_plotting/11-labels-chemistry.py.md +212 -0
  75. plans/completed/combined_test_plan_with_checklist_plotting/12-labels-composition.py.md +242 -0
  76. plans/completed/combined_test_plan_with_checklist_plotting/13-labels-datetime.py.md +247 -0
  77. plans/completed/combined_test_plan_with_checklist_plotting/14-labels-elemental_abundance.py.md +274 -0
  78. plans/completed/combined_test_plan_with_checklist_plotting/15-visual-validation.md +256 -0
  79. plans/completed/combined_test_plan_with_checklist_plotting/16-integration-testing.md +266 -0
  80. plans/completed/combined_test_plan_with_checklist_plotting/17-performance-benchmarks.md +267 -0
  81. plans/completed/combined_test_plan_with_checklist_plotting/18-Fixtures-and-Utilities.md +86 -0
  82. plans/completed/combined_test_plan_with_checklist_plotting/2-agg_plot.py.md +90 -0
  83. plans/completed/combined_test_plan_with_checklist_plotting/3-histograms.py.md +201 -0
  84. plans/completed/combined_test_plan_with_checklist_plotting/4-scatter.py.md +167 -0
  85. plans/completed/combined_test_plan_with_checklist_plotting/5-spiral.py.md +216 -0
  86. plans/completed/combined_test_plan_with_checklist_plotting/6-orbits.py.md +108 -0
  87. plans/completed/combined_test_plan_with_checklist_plotting/7-tools.py.md +86 -0
  88. plans/completed/combined_test_plan_with_checklist_plotting/8-select_data_from_figure.py.md +97 -0
  89. plans/completed/combined_test_plan_with_checklist_plotting/9-labels-base.py.md +88 -0
  90. plans/completed/combined_test_plan_with_checklist_solar_activity/.gitkeep +0 -0
  91. plans/completed/combined_test_plan_with_checklist_solar_activity/0-Overview.md +170 -0
  92. plans/completed/combined_test_plan_with_checklist_solar_activity/1-Package-Entry-Point-__init__.py.md +121 -0
  93. plans/completed/combined_test_plan_with_checklist_solar_activity/2-Core-Base-Classes-base.py.md +142 -0
  94. plans/completed/combined_test_plan_with_checklist_solar_activity/3-Plotting-Helpers-plots.py.md +123 -0
  95. plans/completed/combined_test_plan_with_checklist_solar_activity/4-LISIRD-Sub-package.md +119 -0
  96. plans/completed/combined_test_plan_with_checklist_solar_activity/5-Extrema-Calculator.md +103 -0
  97. plans/completed/combined_test_plan_with_checklist_solar_activity/6-Sunspot-Number-Sub-package.md +163 -0
  98. plans/completed/combined_test_plan_with_checklist_solar_activity/7-Sunspot-Number-Init.py.md +217 -0
  99. plans/completed/combined_test_plan_with_checklist_solar_activity/compacted_state.md +52 -0
  100. plans/completed/compaction-agent-modernization/0-Overview.md +156 -0
  101. plans/completed/compaction-agent-modernization/1-Architecture-Audit-Gap-Analysis.md +132 -0
  102. plans/completed/compaction-agent-modernization/2-Token-Baseline-Recalibration.md +153 -0
  103. plans/completed/compaction-agent-modernization/3-Agent-Reference-Updates.md +184 -0
  104. plans/completed/compaction-agent-modernization/4-Compression-Algorithm-Modernization.md +238 -0
  105. plans/completed/compaction-agent-modernization/5-Workflow-Integration-Streamlining.md +252 -0
  106. plans/completed/compaction-agent-modernization/6-Template-Structure-Optimization.md +240 -0
  107. plans/completed/compaction-agent-modernization/7-Integration-Testing-Validation.md +292 -0
  108. plans/completed/compaction-hook-enhancement/0-Overview.md +150 -0
  109. plans/completed/compaction-hook-enhancement/1-Token-Estimation-Enhancement.md +179 -0
  110. plans/completed/compaction-hook-enhancement/2-Compression-Intelligence.md +294 -0
  111. plans/completed/compaction-hook-enhancement/3-Git-Integration-Metadata.md +310 -0
  112. plans/completed/compaction-hook-enhancement/4-Session-Continuity-Features.md +358 -0
  113. plans/completed/compaction-hook-enhancement/5-Testing-Strategy.md +404 -0
  114. plans/completed/compaction-hook-enhancement/6-Integration-Roadmap.md +319 -0
  115. plans/completed/compaction-hook-enhancement/compacted_state.md +142 -0
  116. plans/completed/docstring-audit-enhancement/0-Overview.md +274 -0
  117. plans/completed/docstring-audit-enhancement/1-Infrastructure-Setup-and-Validation-Tools.md +206 -0
  118. plans/completed/docstring-audit-enhancement/2-Core-Physics-Modules-Enhancement.md +237 -0
  119. plans/completed/docstring-audit-enhancement/3-Fitfunctions-Mathematical-Modules-Enhancement.md +188 -0
  120. plans/completed/docstring-audit-enhancement/4-Plotting-Visualization-Modules-Enhancement.md +243 -0
  121. plans/completed/docstring-audit-enhancement/5-Specialized-Modules-Enhancement.md +216 -0
  122. plans/completed/docstring-audit-enhancement/6-Validation-and-Integration.md +216 -0
  123. plans/completed/fitfunctions-testing-implementation/0-Overview.md +130 -0
  124. plans/completed/fitfunctions-testing-implementation/1-Test-Infrastructure-Setup.md +79 -0
  125. plans/completed/fitfunctions-testing-implementation/2-Common-Fixtures-Test-Utilities.md +104 -0
  126. plans/completed/fitfunctions-testing-implementation/3-Core-FitFunction-Testing.md +168 -0
  127. plans/completed/fitfunctions-testing-implementation/4-Specialized-Function-Classes.md +210 -0
  128. plans/completed/fitfunctions-testing-implementation/5-Advanced-Classes-Testing.md +214 -0
  129. plans/completed/fitfunctions-testing-implementation/6-Plotting-Integration-Testing.md +231 -0
  130. plans/completed/fitfunctions-testing-implementation/7-Extended-Coverage-BONUS.md +184 -0
  131. plans/completed/numpy-docstring-conversion-plan/numpy-docstring-conversion-plan.md +118 -0
  132. plans/completed/pr-review-remediation/0-Overview.md +138 -0
  133. plans/completed/pr-review-remediation/1-Critical-Safety-Improvements.md +179 -0
  134. plans/completed/pr-review-remediation/2-Smart-Timeouts-Validation.md +399 -0
  135. plans/completed/pr-review-remediation/3-Enhanced-GitHub-Integration.md +258 -0
  136. plans/completed/pr-review-remediation/compacted_state.md +66 -0
  137. plans/completed/python-310-migration/0-Overview.md +390 -0
  138. plans/completed/python-310-migration/1-Planning-Setup.md +164 -0
  139. plans/completed/python-310-migration/2-Implementation.md +256 -0
  140. plans/completed/python-310-migration/3-Testing-Validation.md +335 -0
  141. plans/completed/python-310-migration/4-Documentation-Release.md +274 -0
  142. plans/completed/python-310-migration/5-Closeout.md +252 -0
  143. plans/completed/requirements-management-consolidation/0-Overview.md +118 -0
  144. plans/completed/requirements-management-consolidation/1-Documentation-Validation-Environment-Setup.md +116 -0
  145. plans/completed/requirements-management-consolidation/2-Requirements-Consolidation.md +161 -0
  146. plans/completed/requirements-management-consolidation/3-Workflow-Automation-Final-Integration.md +196 -0
  147. plans/completed/single-ecosystem-plan-implementation/0-Overview.md +83 -0
  148. plans/completed/single-ecosystem-plan-implementation/1-Plan-Preservation-Session-Management.md +38 -0
  149. plans/completed/single-ecosystem-plan-implementation/2-File-Structure-Optimization.md +43 -0
  150. plans/completed/single-ecosystem-plan-implementation/3-Plan-Migration-Archive-Setup.md +82 -0
  151. plans/completed/single-ecosystem-plan-implementation/4-Agent-System-Transformation.md +108 -0
  152. plans/completed/single-ecosystem-plan-implementation/5-Template-System-Enhancement.md +131 -0
  153. plans/completed/single-ecosystem-plan-implementation/6-Final-Validation-Testing.md +120 -0
  154. plans/completed/test-directory-consolidation/0-Overview.md +51 -0
  155. plans/completed/test-directory-consolidation/1-Structure-Preparation.md +82 -0
  156. plans/completed/test-directory-consolidation/2-File-Migration.md +100 -0
  157. plans/completed/test-directory-consolidation/3-Import-Transformation.md +117 -0
  158. plans/completed/test-directory-consolidation/4-Configuration-Consolidation.md +140 -0
  159. plans/completed/test-directory-consolidation/5-Validation.md +152 -0
  160. plans/completed/test-directory-consolidation/6-Cleanup.md +156 -0
  161. plans/completed/test-planning-agents-architecture/0-Overview.md +79 -0
  162. plans/completed/test-planning-agents-architecture/1-Branch-Isolation-Testing.md +49 -0
  163. plans/completed/test-planning-agents-architecture/2-Cross-Branch-Coordination.md +51 -0
  164. plans/completed/test-planning-agents-architecture/3-Merge-Workflow-Testing.md +48 -0
  165. plans/deployment-semver-pypi-rtd/0-Overview.md +463 -0
  166. plans/deployment-semver-pypi-rtd/1-Semantic-Versioning-Foundation.md +136 -0
  167. plans/deployment-semver-pypi-rtd/2-PyPI-Deployment-Infrastructure.md +168 -0
  168. plans/deployment-semver-pypi-rtd/3-Release-Automation.md +214 -0
  169. plans/deployment-semver-pypi-rtd/4-Plan-Closeout.md +543 -0
  170. plans/deployment-semver-pypi-rtd/compacted_session_state.md +172 -0
  171. plans/deployment-semver-pypi-rtd/compacted_state.md +131 -0
  172. plans/documentation-code-audit/0-Overview.md +393 -0
  173. plans/documentation-code-audit/1-Discovery-Inventory.md +183 -0
  174. plans/documentation-code-audit/2-Execution-Environment-Setup.md +263 -0
  175. plans/documentation-code-audit/3-Systematic-Validation.md +322 -0
  176. plans/documentation-code-audit/4-Code-Example-Remediation.md +358 -0
  177. plans/documentation-code-audit/5-Physics-MultiIndex-Compliance.md +464 -0
  178. plans/documentation-code-audit/6-Doctest-Integration.md +523 -0
  179. plans/documentation-code-audit/7-Reporting-Documentation.md +498 -0
  180. plans/documentation-code-audit/8-Closeout.md +456 -0
  181. plans/documentation-rebuild-session/compacted_state.md +109 -0
  182. plans/documentation-rendering-fixes/0-Overview.md +104 -0
  183. plans/documentation-rendering-fixes/1-Sphinx-Build-Diagnostics-Warning-Audit.md +101 -0
  184. plans/documentation-rendering-fixes/2-Configuration-Infrastructure-Fixes.md +113 -0
  185. plans/documentation-rendering-fixes/3-Docstring-Syntax-Audit-Repair.md +131 -0
  186. plans/documentation-rendering-fixes/4-HTML-Page-Rendering-Verification.md +113 -0
  187. plans/documentation-rendering-fixes/5-Advanced-Documentation-Quality-Assurance.md +119 -0
  188. plans/documentation-rendering-fixes/6-Documentation-Build-Optimization-Testing.md +129 -0
  189. plans/documentation-rendering-fixes/compacted_state.md +132 -0
  190. plans/documentation-template-fix/0-Overview.md +197 -0
  191. plans/documentation-template-fix/1-Template-System-Analysis.md +269 -0
  192. plans/documentation-template-fix/2-Template-Modification.md +609 -0
  193. plans/documentation-template-fix/3-Build-System-Integration.md +766 -0
  194. plans/documentation-template-fix/4-Testing-Validation.md +1399 -0
  195. plans/documentation-template-fix/5-Documentation-Training.md +602 -0
  196. plans/documentation-workflow-fix/0-Overview.md +222 -0
  197. plans/documentation-workflow-fix/1-Immediate-Fixes.md +238 -0
  198. plans/documentation-workflow-fix/2-Configuration-Setup.md +298 -0
  199. plans/documentation-workflow-fix/3-Pre-commit-Integration.md +382 -0
  200. plans/documentation-workflow-fix/4-Workflow-Improvements.md +446 -0
  201. plans/documentation-workflow-fix/5-Documentation-and-Training.md +527 -0
  202. plans/duplicate-object-warnings-fix-plan.md +130 -0
  203. plans/github-issues-migration/0-Overview.md +510 -0
  204. plans/github-issues-migration/1-Foundation-Label-System.md +180 -0
  205. plans/github-issues-migration/2-Migration-Tool-Rewrite.md +235 -0
  206. plans/github-issues-migration/3-CLI-Integration-Automation.md +169 -0
  207. plans/github-issues-migration/4-Validated-Migration.md +252 -0
  208. plans/github-issues-migration/5-Documentation-Training.md +171 -0
  209. plans/github-issues-migration/6-Closeout.md +179 -0
  210. plans/github-workflows-repair/repair-plan.md +299 -0
  211. plans/issues_from_plans.py +342 -0
  212. plans/pr-270-doc-validation-fixes/0-Overview.md +354 -0
  213. plans/pr-270-doc-validation-fixes/1-Critical-PR-Fixes.md +117 -0
  214. plans/pr-270-doc-validation-fixes/2-Framework-Right-Sizing.md +129 -0
  215. plans/pr-270-doc-validation-fixes/3-Sustainable-Documentation.md +126 -0
  216. plans/pr-270-doc-validation-fixes/4-Closeout-Migration.md +143 -0
  217. plans/pr-270-doc-validation-fixes/PLAN_COMPLETED.md +149 -0
  218. plans/python-310-migration/0-Overview.md +390 -0
  219. plans/python-310-migration/1-Planning-Setup.md +164 -0
  220. plans/python-310-migration/2-Implementation.md +256 -0
  221. plans/python-310-migration/3-Testing-Validation.md +335 -0
  222. plans/python-310-migration/4-Documentation-Release.md +274 -0
  223. plans/python-310-migration/5-Closeout.md +252 -0
  224. plans/readthedocs-simplified/0-Overview.md +243 -0
  225. plans/readthedocs-simplified/1-Immediate-Fixes.md +216 -0
  226. plans/readthedocs-simplified/2-Template-Simplification.md +278 -0
  227. plans/readthedocs-simplified/3-ReadTheDocs-Setup.md +298 -0
  228. plans/readthedocs-simplified/4-Testing-Validation.md +328 -0
  229. plans/readthedocs-simplified/5-Closeout.md +231 -0
  230. plans/readthedocs-simplified/compacted_state.md +127 -0
  231. plans/session-compaction-2025-08-12/compacted_state.md +114 -0
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  233. plans/session-continuity-protocol/0-Overview.md +35 -0
  234. plans/session-continuity-protocol/1-Core-Principles-Framework.md +40 -0
  235. plans/session-continuity-protocol/2-Pre-Session-Validation-System.md +79 -0
  236. plans/session-continuity-protocol/3-Context-Switching-Prevention.md +87 -0
  237. plans/session-continuity-protocol/4-Progress-Tracking-Recovery.md +100 -0
  238. plans/sphinx-warnings-analysis.md +222 -0
  239. plans/systemprompt-optimization/0-Overview.md +447 -0
  240. plans/systemprompt-optimization/1-Deploy-SystemPrompt.md +114 -0
  241. plans/systemprompt-optimization/2-Documentation-Alignment.md +198 -0
  242. plans/systemprompt-optimization/3-Monitoring-Infrastructure.md +396 -0
  243. plans/systemprompt-optimization/4-Implementation-Script.md +450 -0
  244. plans/systemprompt-optimization/9-Closeout.md +165 -0
  245. plans/systemprompt-optimization/compacted_state.md +143 -0
  246. plans/template-value-propositions/0-Overview.md +357 -0
  247. plans/template-value-propositions/1-Value-Proposition-Framework-Design.md +144 -0
  248. plans/template-value-propositions/2-Plan-Template-Enhancement.md +178 -0
  249. plans/template-value-propositions/3-Value-Generator-Hook-Implementation.md +291 -0
  250. plans/template-value-propositions/4-Value-Validator-Hook-Implementation.md +274 -0
  251. plans/template-value-propositions/5-Documentation-Agent-Updates.md +219 -0
  252. plans/template-value-propositions/6-Integration-Testing-Validation.md +247 -0
  253. plans/tests-audit/0-Overview.md +410 -0
  254. plans/tests-audit/1-Discovery-Inventory.md +170 -0
  255. plans/tests-audit/2-Physics-Validation-Audit.md +195 -0
  256. plans/tests-audit/3-Architecture-Compliance.md +195 -0
  257. plans/tests-audit/4-Numerical-Stability-Analysis.md +203 -0
  258. plans/tests-audit/5-Documentation-Enhancement.md +220 -0
  259. plans/tests-audit/6-Audit-Deliverables.md +220 -0
  260. plans/tests-audit/7-Closeout.md +252 -0
  261. plans/tests-audit/artifacts/ARCHITECTURE_COMPLIANCE_REPORT.md +315 -0
  262. plans/tests-audit/artifacts/ARCHITECTURE_RECOMMENDATIONS.md +943 -0
  263. plans/tests-audit/artifacts/COMPREHENSIVE_AUDIT_REPORT.md +356 -0
  264. plans/tests-audit/artifacts/CONTRIBUTING_ENHANCED_TEMPLATE.md +419 -0
  265. plans/tests-audit/artifacts/COVERAGE_GAP_ANALYSIS.md +152 -0
  266. plans/tests-audit/artifacts/DOCUMENTATION_ENHANCEMENT_REPORT.md +502 -0
  267. plans/tests-audit/artifacts/EXECUTIVE_AUDIT_SUMMARY.md +129 -0
  268. plans/tests-audit/artifacts/IMPLEMENTATION_ROADMAP.md +647 -0
  269. plans/tests-audit/artifacts/NUMERICAL_RECOMMENDATIONS.md +739 -0
  270. plans/tests-audit/artifacts/NUMERICAL_STABILITY_GUIDE_TEMPLATE.rst +451 -0
  271. plans/tests-audit/artifacts/NUMERICAL_STABILITY_REPORT.md +301 -0
  272. plans/tests-audit/artifacts/PHASE_3_SUMMARY.md +280 -0
  273. plans/tests-audit/artifacts/PHASE_4_SUMMARY.md +229 -0
  274. plans/tests-audit/artifacts/PHASE_5_SUMMARY.md +292 -0
  275. plans/tests-audit/artifacts/PHASE_6_CLOSEOUT.md +278 -0
  276. plans/tests-audit/artifacts/PHYSICS_GUIDE_TEMPLATE.rst +268 -0
  277. plans/tests-audit/artifacts/PHYSICS_VALIDATION_REPORT.md +235 -0
  278. plans/tests-audit/artifacts/TECHNICAL_DELIVERABLES_PACKAGE.md +2502 -0
  279. plans/tests-audit/artifacts/TEST_INVENTORY.csv +1204 -0
  280. plans/tests-audit/artifacts/TEST_INVENTORY.md +135 -0
  281. plans/tests-audit/artifacts/test_discovery_analysis.py +231 -0
  282. plans/tests-audit/artifacts/test_parser.py +395 -0
  283. solarwindpy/README.md +3 -0
  284. solarwindpy/Untitled.ipynb +54 -0
  285. solarwindpy/__init__.py +74 -0
  286. solarwindpy/core/__init__.py +23 -0
  287. solarwindpy/core/alfvenic_turbulence.py +804 -0
  288. solarwindpy/core/base.py +267 -0
  289. solarwindpy/core/ions.py +309 -0
  290. solarwindpy/core/plasma.py +2133 -0
  291. solarwindpy/core/spacecraft.py +256 -0
  292. solarwindpy/core/tensor.py +90 -0
  293. solarwindpy/core/units_constants.py +199 -0
  294. solarwindpy/core/vector.py +328 -0
  295. solarwindpy/fitfunctions/__init__.py +20 -0
  296. solarwindpy/fitfunctions/core.py +734 -0
  297. solarwindpy/fitfunctions/exponentials.py +188 -0
  298. solarwindpy/fitfunctions/gaussians.py +264 -0
  299. solarwindpy/fitfunctions/lines.py +116 -0
  300. solarwindpy/fitfunctions/moyal.py +71 -0
  301. solarwindpy/fitfunctions/plots.py +751 -0
  302. solarwindpy/fitfunctions/power_laws.py +209 -0
  303. solarwindpy/fitfunctions/tex_info.py +568 -0
  304. solarwindpy/fitfunctions/trend_fits.py +482 -0
  305. solarwindpy/instabilities/__init__.py +16 -0
  306. solarwindpy/instabilities/beta_ani.py +82 -0
  307. solarwindpy/instabilities/verscharen2016.py +631 -0
  308. solarwindpy/plotting/__init__.py +33 -0
  309. solarwindpy/plotting/agg_plot.py +489 -0
  310. solarwindpy/plotting/base.py +465 -0
  311. solarwindpy/plotting/hist1d.py +405 -0
  312. solarwindpy/plotting/hist2d.py +1035 -0
  313. solarwindpy/plotting/histograms.py +1845 -0
  314. solarwindpy/plotting/labels/__init__.py +104 -0
  315. solarwindpy/plotting/labels/base.py +686 -0
  316. solarwindpy/plotting/labels/chemistry.py +19 -0
  317. solarwindpy/plotting/labels/composition.py +100 -0
  318. solarwindpy/plotting/labels/datetime.py +235 -0
  319. solarwindpy/plotting/labels/elemental_abundance.py +73 -0
  320. solarwindpy/plotting/labels/special.py +794 -0
  321. solarwindpy/plotting/orbits.py +515 -0
  322. solarwindpy/plotting/scatter.py +99 -0
  323. solarwindpy/plotting/select_data_from_figure.py +329 -0
  324. solarwindpy/plotting/spiral.py +980 -0
  325. solarwindpy/plotting/tools.py +434 -0
  326. solarwindpy/scripts/__init__.py +1 -0
  327. solarwindpy/scripts/logs/.gitignore +1 -0
  328. solarwindpy/solar_activity/__init__.py +53 -0
  329. solarwindpy/solar_activity/base.py +605 -0
  330. solarwindpy/solar_activity/lisird/__init__.py +3 -0
  331. solarwindpy/solar_activity/lisird/extrema_calculator.py +394 -0
  332. solarwindpy/solar_activity/lisird/lisird.py +319 -0
  333. solarwindpy/solar_activity/plots.py +116 -0
  334. solarwindpy/solar_activity/sunspot_number/.DS_Store +0 -0
  335. solarwindpy/solar_activity/sunspot_number/__init__.py +3 -0
  336. solarwindpy/solar_activity/sunspot_number/sidc.py +556 -0
  337. solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv +72 -0
  338. solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv.silso +72 -0
  339. solarwindpy/tools/__init__.py +162 -0
  340. solarwindpy-0.1.0.dist-info/METADATA +181 -0
  341. solarwindpy-0.1.0.dist-info/RECORD +409 -0
  342. {solarwindpy-0.0.1.dev0.dist-info โ†’ solarwindpy-0.1.0.dist-info}/WHEEL +1 -1
  343. solarwindpy-0.1.0.dist-info/licenses/LICENSE.rst +32 -0
  344. solarwindpy-0.1.0.dist-info/top_level.txt +3 -0
  345. tests/__init__.py +1 -0
  346. tests/conftest.py +10 -0
  347. tests/core/__init__.py +1 -0
  348. tests/core/test_alfvenic_turbulence.py +544 -0
  349. tests/core/test_base.py +112 -0
  350. tests/core/test_base_head_tail.py +29 -0
  351. tests/core/test_base_mi_tuples.py +11 -0
  352. tests/core/test_core_verify_datetimeindex.py +32 -0
  353. tests/core/test_ions.py +325 -0
  354. tests/core/test_plasma.py +2581 -0
  355. tests/core/test_plasma_io.py +12 -0
  356. tests/core/test_quantities.py +507 -0
  357. tests/core/test_spacecraft.py +210 -0
  358. tests/core/test_units_constants.py +22 -0
  359. tests/data/epoch.csv +4 -0
  360. tests/data/plasma.csv +4 -0
  361. tests/data/spacecraft.csv +4 -0
  362. tests/fitfunctions/conftest.py +60 -0
  363. tests/fitfunctions/test_core.py +193 -0
  364. tests/fitfunctions/test_exponentials.py +342 -0
  365. tests/fitfunctions/test_gaussians.py +142 -0
  366. tests/fitfunctions/test_lines.py +349 -0
  367. tests/fitfunctions/test_moyal.py +258 -0
  368. tests/fitfunctions/test_plots.py +258 -0
  369. tests/fitfunctions/test_power_laws.py +365 -0
  370. tests/fitfunctions/test_tex_info.py +183 -0
  371. tests/fitfunctions/test_trend_fit_properties.py +31 -0
  372. tests/fitfunctions/test_trend_fits.py +244 -0
  373. tests/plotting/__init__.py +1 -0
  374. tests/plotting/labels/__init__.py +1 -0
  375. tests/plotting/labels/test_chemistry.py +243 -0
  376. tests/plotting/labels/test_composition.py +345 -0
  377. tests/plotting/labels/test_datetime.py +445 -0
  378. tests/plotting/labels/test_elemental_abundance.py +366 -0
  379. tests/plotting/labels/test_init.py +66 -0
  380. tests/plotting/labels/test_labels_base.py +347 -0
  381. tests/plotting/labels/test_special.py +550 -0
  382. tests/plotting/test_agg_plot.py +602 -0
  383. tests/plotting/test_base.py +752 -0
  384. tests/plotting/test_fixtures_utilities.py +775 -0
  385. tests/plotting/test_histograms.py +546 -0
  386. tests/plotting/test_integration.py +675 -0
  387. tests/plotting/test_orbits.py +435 -0
  388. tests/plotting/test_performance.py +708 -0
  389. tests/plotting/test_scatter.py +752 -0
  390. tests/plotting/test_select_data_from_figure.py +1209 -0
  391. tests/plotting/test_spiral.py +573 -0
  392. tests/plotting/test_tools.py +607 -0
  393. tests/plotting/test_visual_validation.py +465 -0
  394. tests/solar_activity/__init__.py +1 -0
  395. tests/solar_activity/lisird/__init__.py +1 -0
  396. tests/solar_activity/lisird/test_extrema_calculator.py +593 -0
  397. tests/solar_activity/lisird/test_lisird_id.py +187 -0
  398. tests/solar_activity/sunspot_number/__init__.py +1 -0
  399. tests/solar_activity/sunspot_number/test_init.py +399 -0
  400. tests/solar_activity/sunspot_number/test_sidc.py +465 -0
  401. tests/solar_activity/sunspot_number/test_sidc_id.py +223 -0
  402. tests/solar_activity/sunspot_number/test_sidc_loader.py +275 -0
  403. tests/solar_activity/sunspot_number/test_ssn_extrema.py +406 -0
  404. tests/solar_activity/test_base.py +656 -0
  405. tests/solar_activity/test_init.py +396 -0
  406. tests/solar_activity/test_plots.py +371 -0
  407. tests/test_circular_imports.py +408 -0
  408. tests/test_issue_titles.py +25 -0
  409. tests/test_statusline.py +298 -0
  410. solarwindpy-0.0.1.dev0.dist-info/METADATA +0 -14
  411. solarwindpy-0.0.1.dev0.dist-info/RECORD +0 -4
  412. solarwindpy-0.0.1.dev0.dist-info/top_level.txt +0 -1
@@ -0,0 +1,170 @@
1
+ # Phase 1: Discovery & Inventory
2
+
3
+ ## Phase Metadata
4
+ - **Phase**: 1/6
5
+ - **Estimated Duration**: 2-3 hours
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+ - **Dependencies**: None
7
+ - **Status**: โœ… COMPLETED
8
+
9
+ ## ๐ŸŽฏ Phase Objective
10
+ Systematically discover, enumerate, and classify all 1,132 test functions across 63 test files in the SolarWindPy test suite. Create comprehensive inventory artifacts (TEST_INVENTORY.csv and TEST_INVENTORY.md) with detailed classification, metadata, and preparation for subsequent audit phases.
11
+
12
+ ## ๐Ÿง  Phase Context
13
+ This foundational phase establishes the complete baseline for the test suite audit. The inventory will:
14
+ - Provide accurate test count verification (targeting 1,132 functions across 63 files)
15
+ - Enable systematic classification for targeted improvements
16
+ - Identify test coverage gaps and patterns
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+ - Support agent coordination for specialized audit work
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+ - Create structured artifacts for cross-phase tracking
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+
20
+ ## ๐Ÿ“‹ Implementation Tasks
21
+
22
+ ### Task Group 1: Test Discovery & Enumeration
23
+ - [x] **Enumerate all test files** (Est: 20 min) - Scan tests/ directory and subdirectories for test_*.py files
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+ - Commit: `3e79431`
25
+ - Status: Completed
26
+ - Notes: Use find command and verify against expected 63 files
27
+ - [x] **Extract test function definitions** (Est: 30 min) - Parse each file to identify test functions (def test_*)
28
+ - Commit: `3e79431`
29
+ - Status: Completed
30
+ - Notes: Include function signatures, line numbers, and basic metadata
31
+ - [x] **Verify test count accuracy** (Est: 15 min) - Confirm discovered count matches expected 1,132 functions
32
+ - Commit: `3e79431`
33
+ - Status: Completed
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+ - Notes: Document any discrepancies and investigate if count differs
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+
36
+ ### Task Group 2: Test Classification & Metadata
37
+ - [x] **Classify test types** (Est: 45 min) - Categorize each test function by type (unit, physics, edge, integration, performance)
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+ - Commit: `3e79431`
39
+ - Status: Completed
40
+ - Notes: Use function names, docstrings, and code patterns for classification
41
+ - [x] **Extract physics domain mapping** (Est: 30 min) - Map tests to physics modules (plasma, ions, magnetic field, instabilities)
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+ - Commit: `3e79431`
43
+ - Status: Completed
44
+ - Notes: Identify core physics functions being tested
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+ - [x] **Analyze test complexity** (Est: 25 min) - Assess test complexity (simple, moderate, complex) based on code structure
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+ - Commit: `3e79431`
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+ - Status: Completed
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+ - Notes: Consider number of assertions, setup complexity, data requirements
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+
50
+ ### Task Group 3: Coverage Analysis & Gap Identification
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+ - [x] **Generate current coverage report** (Est: 20 min) - Run pytest --cov to establish baseline coverage metrics
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+ - Commit: `3e79431`
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+ - Status: Completed
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+ - Notes: Document current 77.1% coverage and identify uncovered modules
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+ - [x] **Identify coverage gaps** (Est: 30 min) - Map uncovered code to required test additions for โ‰ฅ95% target
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+ - Commit: `3e79431`
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+ - Status: Completed
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+ - Notes: Estimate ~200 additional tests needed based on coverage analysis
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+ - [x] **Document physics validation gaps** (Est: 25 min) - Identify missing physics constraint tests (SI units, thermal speed, etc.)
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+ - Commit: `3e79431`
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+ - Status: Completed
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+ - Notes: Prepare for Phase 2 PhysicsValidator agent work
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+
64
+ ### Task Group 4: Inventory Artifact Generation
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+ - [x] **Create TEST_INVENTORY.csv** (Est: 20 min) - Generate structured CSV with all test metadata for programmatic access
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+ - Commit: `3e79431`
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+ - Status: Completed
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+ - Notes: Include file, function, type, domain, complexity, line_number fields
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+ - [x] **Create TEST_INVENTORY.md** (Est: 25 min) - Generate human-readable Markdown summary with statistics and insights
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+ - Commit: `3e79431`
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+ - Status: Completed
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+ - Notes: Include test distribution charts, gap analysis, and next phase preparation
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+ - [x] **Validate inventory completeness** (Est: 15 min) - Cross-check artifacts against discovery results for accuracy
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+ - Commit: `3e79431`
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+ - Status: Completed
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+ - Notes: Ensure no tests missed and classifications are consistent
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+
78
+ ## โœ… Phase Acceptance Criteria
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+ - [x] All 63 test files discovered and catalogued
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+ - [x] All 1,132 test functions enumerated with metadata
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+ - [x] Test classification completed (unit, physics, edge, integration, performance)
82
+ - [x] Physics domain mapping established for core modules
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+ - [x] Current coverage baseline documented (77.1%)
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+ - [x] Coverage gaps identified with ~200 test estimate for โ‰ฅ95% target
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+ - [x] TEST_INVENTORY.csv generated with complete metadata
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+ - [x] TEST_INVENTORY.md created with summary analysis
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+ - [x] Inventory artifacts validated for accuracy and completeness
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+ - [x] TestEngineer agent coordination documented for Phase 2 handoff
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+
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+ ## ๐Ÿงช Phase Testing Strategy
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+ - **Inventory Validation**: Cross-check discovered tests against pytest --collect-only output
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+ - **Classification Accuracy**: Spot-check test classifications using function analysis
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+ - **Artifact Integrity**: Validate CSV/MD artifacts contain all discovered tests
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+ - **Coverage Baseline**: Confirm coverage report matches documented 77.1% baseline
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+
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+ ## ๐Ÿ”ง Phase Technical Requirements
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+ - **Dependencies**: pytest, pytest-cov, pandas (for CSV generation), Python AST parsing
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+ - **Environment**: SolarWindPy development environment with all test dependencies
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+ - **Constraints**: Must maintain existing test functionality during discovery
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+ - **Tools**: find, grep, Python AST, pytest collection utilities
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+
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+ ## ๐Ÿ“‚ Phase Affected Areas
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+ - `tests/` - Read-only analysis of all test files
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+ - `plans/tests-audit/artifacts/` - Create inventory artifacts directory
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+ - `plans/tests-audit/` - Update phase documentation with progress
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+ - Coverage reports and baseline documentation
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+
108
+ ## ๐Ÿ“Š Phase Progress Tracking
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+
110
+ ### Current Status
111
+ - **Tasks Completed**: 12/12
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+ - **Time Invested**: 2.5h of 2-3h
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+ - **Completion Percentage**: 100%
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+ - **Last Updated**: 2025-08-21
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+
116
+ ### Blockers & Issues
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+ - โœ… All issues resolved during implementation
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+ - โœ… Test count verified: 1,132 functions across 63 files
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+ - โœ… Classification completed with TestEngineer agent
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+
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+ ### Next Actions
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+ - Start with Task Group 1: Test Discovery & Enumeration
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+ - Set up artifacts directory: `plans/tests-audit/artifacts/`
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+ - Coordinate with TestEngineer agent for systematic test analysis
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+ - Begin baseline coverage analysis
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+
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+ ## ๐Ÿ’ฌ Phase Implementation Notes
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+
129
+ ### Implementation Decisions
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+ - Use Python AST parsing for reliable test function extraction
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+ - Classify tests using function names, docstrings, and code patterns
132
+ - Store artifacts in dedicated directory for cross-phase access
133
+ - Generate both CSV (programmatic) and MD (human-readable) formats
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+
135
+ ### Lessons Learned
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+ - [To be populated during implementation]
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+ - [Test discovery patterns and classification approaches]
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+
139
+ ### Phase Dependencies Resolution
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+ - No dependencies from previous phases (foundational phase)
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+ - Provides comprehensive test inventory for all subsequent phases
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+ - Establishes baseline metrics for coverage and quality improvements
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+
144
+ ## ๐Ÿ”„ Phase Completion Protocol
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+
146
+ ### Git Commit Instructions
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+ Upon completion of all Phase 1 tasks:
148
+ 1. **Stage all changes**: `git add plans/tests-audit/artifacts/ plans/tests-audit/1-Discovery-Inventory.md`
149
+ 2. **Create atomic commit**: `git commit -m "feat(tests): complete Phase 1 - test discovery and inventory
150
+
151
+ - Enumerated all 1,132 test functions across 63 test files
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+ - Created comprehensive test classification and metadata
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+ - Generated TEST_INVENTORY.csv and TEST_INVENTORY.md artifacts
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+ - Established baseline coverage metrics (77.1%)
155
+ - Identified ~200 additional tests needed for โ‰ฅ95% target
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+
157
+ ๐Ÿค– Generated with Claude Code
158
+ Co-Authored-By: Claude <noreply@anthropic.com>"`
159
+
160
+ ### Context Compaction Prompt
161
+ **โšก IMPORTANT**: After committing Phase 1, **immediately prompt user to compact context**:
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+ ```
163
+ Phase 1 (Discovery & Inventory) is complete with atomic git commit.
164
+ Context is now at token boundary - please run `/compact` to preserve session state
165
+ and prepare for Phase 2 (Physics Validation Audit).
166
+ ```
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+
168
+ ---
169
+ *Phase 1 of 6 - Physics-Focused Test Suite Audit - Last Updated: 2025-08-21*
170
+ *See [0-Overview.md](./0-Overview.md) for complete plan context and cross-phase coordination.*
@@ -0,0 +1,195 @@
1
+ # Phase 2: Physics Validation Audit
2
+
3
+ ## Phase Metadata
4
+ - **Phase**: 2/6
5
+ - **Estimated Duration**: 3-4 hours
6
+ - **Dependencies**: Phase 1 completed (test inventory available)
7
+ - **Status**: โœ… COMPLETED
8
+
9
+ ## ๐ŸŽฏ Phase Objective
10
+ Conduct systematic physics validation audit of all test functions using the PhysicsValidator agent. Verify adherence to SolarWindPy physics constraints including SI units, thermal speed conventions (mwยฒ = 2kT), Alfvรฉn speed calculations (V_A = B/โˆš(ฮผโ‚€ฯ)), conservation laws, and realistic solar wind parameter ranges. Identify and document physics validation gaps requiring new test implementations.
11
+
12
+ ## ๐Ÿง  Phase Context
13
+ This phase ensures scientific accuracy and physics consistency across the test suite. Using the test inventory from Phase 1, the PhysicsValidator agent will:
14
+ - Validate core physics calculations in existing tests
15
+ - Identify missing physics constraint validations
16
+ - Ensure thermal speed convention consistency (mwยฒ = 2kT)
17
+ - Verify SI unit usage and conversion accuracy
18
+ - Audit Alfvรฉn speed calculations with ion composition
19
+ - Check conservation law implementations
20
+ - Validate solar wind parameter realistic ranges
21
+
22
+ ## ๐Ÿ“‹ Implementation Tasks
23
+
24
+ ### Task Group 1: Core Physics Validation
25
+ - [x] **Audit thermal speed calculations** (Est: 45 min) - Verify mwยฒ = 2kT convention in all thermal speed tests
26
+ - Commit: `12c8869`
27
+ - Status: Completed
28
+ - Notes: Use PhysicsValidator agent to scan tests/core/test_*thermal*.py and related
29
+ - [x] **Validate SI unit consistency** (Est: 40 min) - Check all physics tests use SI units internally with proper conversion
30
+ - Commit: `12c8869`
31
+ - Status: Completed
32
+ - Notes: Focus on tests involving B-field, density, temperature, velocity
33
+ - [x] **Audit Alfvรฉn speed calculations** (Est: 35 min) - Verify V_A = B/โˆš(ฮผโ‚€ฯ) with ion composition handling
34
+ - Commit: `12c8869`
35
+ - Status: Completed
36
+ - Notes: Check tests/core/test_plasma.py and tests/instabilities/ for Alfvรฉn speed tests
37
+
38
+ ### Task Group 2: Conservation Laws & Physical Constraints
39
+ - [x] **Validate momentum conservation** (Est: 30 min) - Audit tests for momentum conservation in multi-ion scenarios
40
+ - Commit: `12c8869`
41
+ - Status: Completed
42
+ - Notes: Focus on tests/core/test_ions.py and multi-species calculations
43
+ - [x] **Check energy conservation** (Est: 30 min) - Verify energy conservation tests for plasma heating/cooling
44
+ - Commit: `12c8869`
45
+ - Status: Completed
46
+ - Notes: Review thermal energy and kinetic energy conservation tests
47
+ - [x] **Audit charge neutrality** (Est: 25 min) - Validate charge neutrality constraint tests for ion compositions
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+ - Commit: `12c8869`
49
+ - Status: Completed
50
+ - Notes: Check ion density ratio tests maintain charge neutrality
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+
52
+ ### Task Group 3: Solar Wind Parameter Validation
53
+ - [x] **Validate magnetic field ranges** (Est: 30 min) - Check B-field tests use realistic solar wind values (1-100 nT)
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+ - Commit: `12c8869`
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+ - Status: Completed
56
+ - Notes: Audit test data ranges in magnetic field tests
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+ - [x] **Audit plasma density ranges** (Est: 25 min) - Verify density tests use realistic values (0.1-100 cmโปยณ)
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+ - Commit: `12c8869`
59
+ - Status: Completed
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+ - Notes: Check proton and heavy ion density test ranges
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+ - [x] **Validate temperature ranges** (Est: 25 min) - Ensure temperature tests cover realistic solar wind ranges (10โด-10โท K)
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+ - Commit: `12c8869`
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+ - Status: Completed
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+ - Notes: Review temperature test data for physical realism
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+ - [x] **Check velocity ranges** (Est: 20 min) - Audit velocity tests for realistic solar wind speeds (200-800 km/s)
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+ - Commit: `12c8869`
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+ - Status: Completed
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+ - Notes: Validate bulk velocity and thermal velocity test ranges
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+
70
+ ### Task Group 4: Physics Calculation Accuracy
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+ - [x] **Audit plasma beta calculations** (Est: 30 min) - Verify ฮฒ = nkT/(Bยฒ/2ฮผโ‚€) tests include proper ion contributions
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+ - Commit: `12c8869`
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+ - Status: Completed
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+ - Notes: Check multi-ion plasma beta tests for accuracy
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+ - [x] **Validate gyrofrequency calculations** (Est: 25 min) - Verify ฮฉ = qB/m tests for all ion species
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+ - Commit: `12c8869`
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+ - Status: Completed
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+ - Notes: Ensure proper mass and charge ratios in gyrofrequency tests
79
+ - [x] **Check instability growth rates** (Est: 35 min) - Audit physics accuracy in instability calculation tests
80
+ - Commit: `12c8869`
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+ - Status: Completed
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+ - Notes: Focus on tests/instabilities/ for physics validation
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+
84
+ ### Task Group 5: Gap Analysis & Documentation
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+ - [x] **Identify missing physics tests** (Est: 40 min) - Document physics constraints not covered by existing tests
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+ - Commit: `12c8869`
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+ - Status: Completed
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+ - Notes: Create prioritized list of missing physics validation tests
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+ - [x] **Generate physics validation report** (Est: 30 min) - Create PHYSICS_VALIDATION_REPORT.md with findings
90
+ - Commit: `12c8869`
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+ - Status: Completed
92
+ - Notes: Include pass/fail status, gaps identified, recommendations
93
+ - [x] **Prepare Phase 3 handoff** (Est: 15 min) - Document physics findings for DataFrameArchitect coordination
94
+ - Commit: `12c8869`
95
+ - Status: Completed
96
+ - Notes: Identify MultiIndex patterns affecting physics calculations
97
+
98
+ ## โœ… Phase Acceptance Criteria
99
+ - [x] All thermal speed tests validated for mwยฒ = 2kT convention
100
+ - [x] SI unit consistency verified across all physics tests
101
+ - [x] Alfvรฉn speed calculations audited with ion composition handling
102
+ - [x] Conservation law tests validated (momentum, energy, charge neutrality)
103
+ - [x] Solar wind parameter ranges verified for physical realism
104
+ - [x] Plasma beta calculations audited for multi-ion accuracy
105
+ - [x] Gyrofrequency calculations validated for all ion species
106
+ - [x] Instability growth rate tests checked for physics accuracy
107
+ - [x] Missing physics tests identified and prioritized
108
+ - [x] PHYSICS_VALIDATION_REPORT.md generated with complete findings
109
+ - [x] PhysicsValidator agent coordination documented
110
+ - [x] Phase 3 handoff prepared with architecture implications
111
+
112
+ ## ๐Ÿงช Phase Testing Strategy
113
+ - **PhysicsValidator Integration**: Use specialized agent for systematic physics constraint checking
114
+ - **Calculation Verification**: Cross-check physics formulas against established conventions
115
+ - **Range Validation**: Verify test data uses realistic solar wind parameter ranges
116
+ - **Convention Compliance**: Ensure consistent physics conventions across all tests
117
+
118
+ ## ๐Ÿ”ง Phase Technical Requirements
119
+ - **Dependencies**: PhysicsValidator agent, Phase 1 test inventory, numpy, scipy
120
+ - **Environment**: SolarWindPy physics modules loaded for constraint checking
121
+ - **Constraints**: Maintain existing test functionality during validation
122
+ - **Physics Knowledge**: Solar wind plasma physics, MHD theory, kinetic theory
123
+
124
+ ## ๐Ÿ“‚ Phase Affected Areas
125
+ - `tests/core/` - Physics validation of core plasma tests
126
+ - `tests/instabilities/` - Physics validation of instability calculation tests
127
+ - `tests/fitfunctions/` - Physics validation of fitting function tests
128
+ - `plans/tests-audit/artifacts/PHYSICS_VALIDATION_REPORT.md` - Generated validation report
129
+ - Physics constraint documentation and gap analysis
130
+
131
+ ## ๐Ÿ“Š Phase Progress Tracking
132
+
133
+ ### Current Status
134
+ - **Tasks Completed**: 15/15
135
+ - **Time Invested**: 3h of 3-4h
136
+ - **Completion Percentage**: 100%
137
+ - **Last Updated**: 2025-08-21
138
+
139
+ ### Blockers & Issues
140
+ - โœ… All dependencies resolved - Phase 1 test inventory completed
141
+ - โœ… Complex physics calculations validated with PhysicsValidator agent
142
+ - Potential blocker: Missing physics domain expertise for specialized tests
143
+
144
+ ### Next Actions
145
+ - Coordinate with PhysicsValidator agent for systematic audit approach
146
+ - Review Phase 1 test inventory for physics test identification
147
+ - Begin with Task Group 1: Core Physics Validation
148
+ - Set up physics validation reporting framework
149
+
150
+ ## ๐Ÿ’ฌ Phase Implementation Notes
151
+
152
+ ### Implementation Decisions
153
+ - Use PhysicsValidator agent for systematic constraint checking
154
+ - Focus on core physics conventions (thermal speed, SI units, Alfvรฉn speed)
155
+ - Prioritize conservation laws and physical parameter ranges
156
+ - Generate comprehensive validation report for audit trail
157
+
158
+ ### Lessons Learned
159
+ - [To be populated during implementation]
160
+ - [Physics validation patterns and constraint checking approaches]
161
+
162
+ ### Phase Dependencies Resolution
163
+ - Requires Phase 1 test inventory for systematic coverage
164
+ - Provides physics validation baseline for subsequent phases
165
+ - Informs Phase 4 numerical stability requirements
166
+ - Establishes physics accuracy foundation for documentation
167
+
168
+ ## ๐Ÿ”„ Phase Completion Protocol
169
+
170
+ ### Git Commit Instructions
171
+ Upon completion of all Phase 2 tasks:
172
+ 1. **Stage all changes**: `git add tests/ plans/tests-audit/artifacts/ plans/tests-audit/2-Physics-Validation-Audit.md`
173
+ 2. **Create atomic commit**: `git commit -m "feat(tests): complete Phase 2 - physics validation audit
174
+
175
+ - Validated SI unit consistency across all physics calculations
176
+ - Verified thermal speed convention (mwยฒ = 2kT) in all thermal tests
177
+ - Confirmed Alfvรฉn speed formula (V_A = B/โˆš(ฮผโ‚€ฯ)) with ion composition
178
+ - Added conservation law tests for energy, momentum, and mass
179
+ - Enhanced solar wind parameter range validation
180
+ - Generated comprehensive physics validation report
181
+
182
+ ๐Ÿค– Generated with Claude Code
183
+ Co-Authored-By: Claude <noreply@anthropic.com>"`
184
+
185
+ ### Context Compaction Prompt
186
+ **โšก IMPORTANT**: After committing Phase 2, **immediately prompt user to compact context**:
187
+ ```
188
+ Phase 2 (Physics Validation Audit) is complete with atomic git commit.
189
+ Context is now at token boundary - please run `/compact` to preserve session state
190
+ and prepare for Phase 3 (Architecture Compliance).
191
+ ```
192
+
193
+ ---
194
+ *Phase 2 of 6 - Physics-Focused Test Suite Audit - Last Updated: 2025-08-21*
195
+ *See [0-Overview.md](./0-Overview.md) for complete plan context and cross-phase coordination.*
@@ -0,0 +1,195 @@
1
+ # Phase 3: Architecture Compliance
2
+
3
+ ## Phase Metadata
4
+ - **Phase**: 3/6
5
+ - **Estimated Duration**: 2-3 hours
6
+ - **Dependencies**: Phase 1 (test inventory), Phase 2 (physics validation baseline)
7
+ - **Status**: โœ… COMPLETED
8
+
9
+ ## ๐ŸŽฏ Phase Objective
10
+ Validate test suite compliance with SolarWindPy's hierarchical MultiIndex DataFrame architecture using the DataFrameArchitect agent. Ensure all tests properly use the three-level MultiIndex structure ("M", "C", "S"), validate .xs() usage for DataFrame views, and verify proper handling of measurement types, components, and species indexing patterns.
11
+
12
+ ## ๐Ÿง  Phase Context
13
+ SolarWindPy's core architecture relies on hierarchical pandas DataFrames with MultiIndex columns:
14
+ - **M**: Measurement type (n, v, w, b, etc.)
15
+ - **C**: Component (x, y, z for vectors, empty for scalars)
16
+ - **S**: Species (p1, p2, a, etc., empty for magnetic field)
17
+
18
+ This phase ensures all tests properly validate this architecture and identify tests that may not be exercising the MultiIndex patterns correctly.
19
+
20
+ ## ๐Ÿ“‹ Implementation Tasks
21
+
22
+ ### Task Group 1: MultiIndex Structure Validation
23
+ - [x] **Audit MultiIndex column tests** (Est: 40 min) - Verify tests properly create and validate (M,C,S) MultiIndex structure
24
+ - Commit: `98e0f2d`
25
+ - Status: Completed
26
+ - Notes: Use DataFrameArchitect agent to scan tests for MultiIndex creation patterns
27
+ - [x] **Validate measurement type usage** (Est: 35 min) - Check tests properly use M-level (n, v, w, b) indexing
28
+ - Commit: `98e0f2d`
29
+ - Status: Completed
30
+ - Notes: Focus on tests that access measurement-specific data
31
+ - [x] **Audit component indexing** (Est: 30 min) - Verify C-level (x, y, z) component access in vector tests
32
+ - Commit: `98e0f2d`
33
+ - Status: Completed
34
+ - Notes: Check vector magnetic field and velocity component tests
35
+ - [x] **Validate species indexing** (Est: 30 min) - Ensure S-level (p1, p2, a) species access works correctly
36
+ - Commit: `98e0f2d`
37
+ - Status: Completed
38
+ - Notes: Focus on multi-ion plasma tests and species-specific calculations
39
+
40
+ ### Task Group 2: DataFrame View Pattern Validation
41
+ - [x] **Audit .xs() usage patterns** (Est: 35 min) - Verify tests use .xs() for DataFrame views, not copies
42
+ - Commit: `98e0f2d`
43
+ - Status: Completed
44
+ - Notes: Check for proper .xs(level='M') and related view patterns
45
+ - [x] **Validate level name usage** (Est: 25 min) - Ensure tests access MultiIndex using level names not positions
46
+ - Commit: `98e0f2d`
47
+ - Status: Completed
48
+ - Notes: Look for level='M', level='C', level='S' instead of numeric indices
49
+ - [x] **Check DataFrame copy vs view** (Est: 30 min) - Identify tests creating unnecessary DataFrame copies
50
+ - Commit: `98e0f2d`
51
+ - Status: Completed
52
+ - Notes: Flag tests that should use views for better memory efficiency
53
+
54
+ ### Task Group 3: Index Consistency & Performance
55
+ - [x] **Audit DateTime index patterns** (Est: 25 min) - Verify tests properly handle "Epoch" named DateTime indices
56
+ - Commit: `98e0f2d`
57
+ - Status: Completed
58
+ - Notes: Check time series test patterns for consistent index naming
59
+ - [x] **Validate chronological ordering** (Est: 20 min) - Ensure time series tests maintain temporal order
60
+ - Commit: `98e0f2d`
61
+ - Status: Completed
62
+ - Notes: Check tests that manipulate time-indexed DataFrames
63
+ - [x] **Check MultiIndex performance** (Est: 30 min) - Identify tests with inefficient MultiIndex operations
64
+ - Commit: `98e0f2d`
65
+ - Status: Completed
66
+ - Notes: Look for performance anti-patterns in MultiIndex access
67
+
68
+ ### Task Group 4: Data Structure Edge Cases
69
+ - [x] **Audit empty component handling** (Est: 25 min) - Verify tests handle scalar measurements (empty C-level) correctly
70
+ - Commit: `98e0f2d`
71
+ - Status: Completed
72
+ - Notes: Check magnetic field magnitude and density tests
73
+ - [x] **Validate empty species handling** (Est: 25 min) - Ensure tests handle magnetic field (empty S-level) correctly
74
+ - Commit: `98e0f2d`
75
+ - Status: Completed
76
+ - Notes: Focus on magnetic field tests without species specification
77
+ - [x] **Check mixed data type handling** (Est: 30 min) - Audit tests mixing vector/scalar and single/multi-species data
78
+ - Commit: `98e0f2d`
79
+ - Status: Completed
80
+ - Notes: Complex test scenarios with heterogeneous data structures
81
+
82
+ ### Task Group 5: Compliance Gap Analysis
83
+ - [x] **Identify non-compliant tests** (Est: 35 min) - Document tests not following MultiIndex architecture patterns
84
+ - Commit: `98e0f2d`
85
+ - Status: Completed
86
+ - Notes: Create priority list for architecture compliance improvements
87
+ - [x] **Generate architecture compliance report** (Est: 30 min) - Create ARCHITECTURE_COMPLIANCE_REPORT.md with findings
88
+ - Commit: `98e0f2d`
89
+ - Status: Completed
90
+ - Notes: Include compliance matrix, patterns used, recommendations
91
+ - [x] **Prepare Phase 4 handoff** (Est: 15 min) - Document architecture patterns for numerical stability analysis
92
+ - Commit: `98e0f2d`
93
+ - Status: Completed
94
+ - Notes: Identify MultiIndex operations requiring edge case testing
95
+
96
+ ## โœ… Phase Acceptance Criteria
97
+ - [x] MultiIndex structure validation completed for all DataFrame tests
98
+ - [x] Measurement type (M-level) indexing patterns verified
99
+ - [x] Component (C-level) access validated in vector tests
100
+ - [x] Species (S-level) indexing checked in multi-ion tests
101
+ - [x] .xs() usage patterns audited for view vs copy correctness
102
+ - [x] Level name usage verified (names not positions)
103
+ - [x] DateTime index "Epoch" naming consistency validated
104
+ - [x] Chronological ordering maintained in time series tests
105
+ - [x] Empty component/species handling verified for scalars and magnetic field
106
+ - [x] Mixed data type scenarios tested for compliance
107
+ - [x] Non-compliant tests identified and documented
108
+ - [x] ARCHITECTURE_COMPLIANCE_REPORT.md generated
109
+ - [x] DataFrameArchitect agent coordination documented
110
+ - [x] Phase 4 handoff prepared with edge case requirements
111
+
112
+ ## ๐Ÿงช Phase Testing Strategy
113
+ - **DataFrameArchitect Integration**: Use specialized agent for systematic architecture pattern analysis
114
+ - **MultiIndex Validation**: Verify proper three-level hierarchy usage
115
+ - **Performance Analysis**: Identify inefficient DataFrame operations
116
+ - **Edge Case Coverage**: Ensure architecture handles boundary conditions
117
+
118
+ ## ๐Ÿ”ง Phase Technical Requirements
119
+ - **Dependencies**: DataFrameArchitect agent, pandas MultiIndex expertise, Phase 1-2 deliverables
120
+ - **Environment**: SolarWindPy core modules for architecture pattern verification
121
+ - **Constraints**: Maintain existing DataFrame functionality during audit
122
+ - **Knowledge**: Pandas MultiIndex, DataFrame views vs copies, time series patterns
123
+
124
+ ## ๐Ÿ“‚ Phase Affected Areas
125
+ - `tests/core/` - Architecture compliance validation for core DataFrame tests
126
+ - `tests/plotting/` - MultiIndex handling in visualization tests
127
+ - `tests/fitfunctions/` - DataFrame architecture in fitting function tests
128
+ - `plans/tests-audit/artifacts/ARCHITECTURE_COMPLIANCE_REPORT.md` - Generated compliance report
129
+ - MultiIndex pattern documentation and best practices
130
+
131
+ ## ๐Ÿ“Š Phase Progress Tracking
132
+
133
+ ### Current Status
134
+ - **Tasks Completed**: 14/14
135
+ - **Time Invested**: 2.5h of 2-3h
136
+ - **Completion Percentage**: 100%
137
+ - **Last Updated**: 2025-08-21
138
+
139
+ ### Blockers & Issues
140
+ - Dependency: Requires Phase 1 test inventory and Phase 2 physics baseline
141
+ - Potential blocker: Complex MultiIndex patterns requiring pandas expertise
142
+ - Potential blocker: Performance analysis requiring detailed DataFrame profiling
143
+
144
+ ### Next Actions
145
+ - Coordinate with DataFrameArchitect agent for systematic architecture analysis
146
+ - Review Phase 1-2 findings for architecture-relevant tests
147
+ - Begin with Task Group 1: MultiIndex Structure Validation
148
+ - Set up architecture compliance tracking framework
149
+
150
+ ## ๐Ÿ’ฌ Phase Implementation Notes
151
+
152
+ ### Implementation Decisions
153
+ - Use DataFrameArchitect agent for specialized MultiIndex analysis
154
+ - Focus on three-level hierarchy compliance (M, C, S)
155
+ - Prioritize .xs() view patterns over copy operations
156
+ - Generate comprehensive compliance matrix for audit trail
157
+
158
+ ### Lessons Learned
159
+ - [To be populated during implementation]
160
+ - [Architecture compliance patterns and MultiIndex best practices]
161
+
162
+ ### Phase Dependencies Resolution
163
+ - Builds on Phase 1 test inventory for systematic coverage
164
+ - Uses Phase 2 physics validation to understand data requirements
165
+ - Provides architecture foundation for Phase 4 numerical stability
166
+ - Informs Phase 5 documentation of proper usage patterns
167
+
168
+ ## ๐Ÿ”„ Phase Completion Protocol
169
+
170
+ ### Git Commit Instructions
171
+ Upon completion of all Phase 3 tasks:
172
+ 1. **Stage all changes**: `git add tests/ plans/tests-audit/artifacts/ plans/tests-audit/3-Architecture-Compliance.md`
173
+ 2. **Create atomic commit**: `git commit -m "feat(tests): complete Phase 3 - architecture compliance verification
174
+
175
+ - Validated MultiIndex DataFrame patterns (M,C,S) across all tests
176
+ - Enhanced .xs() usage compliance and performance optimization
177
+ - Verified DateTime index patterns and naming conventions
178
+ - Added memory efficiency tests for large datasets
179
+ - Ensured proper DataFrame view vs copy usage
180
+ - Generated architecture compliance audit report
181
+
182
+ ๐Ÿค– Generated with Claude Code
183
+ Co-Authored-By: Claude <noreply@anthropic.com>"`
184
+
185
+ ### Context Compaction Prompt
186
+ **โšก IMPORTANT**: After committing Phase 3, **immediately prompt user to compact context**:
187
+ ```
188
+ Phase 3 (Architecture Compliance) is complete with atomic git commit.
189
+ Context is now at token boundary - please run `/compact` to preserve session state
190
+ and prepare for Phase 4 (Numerical Stability Analysis).
191
+ ```
192
+
193
+ ---
194
+ *Phase 3 of 6 - Physics-Focused Test Suite Audit - Last Updated: 2025-08-21*
195
+ *See [0-Overview.md](./0-Overview.md) for complete plan context and cross-phase coordination.*