solarwindpy 0.0.1.dev0__py3-none-any.whl → 0.1.0__py3-none-any.whl

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  1. plans/.velocity/metrics.json +96 -0
  2. plans/0-overview-template.md +268 -0
  3. plans/N-phase-template.md +106 -0
  4. plans/PLAN_AUDIT_SUMMARY.md +173 -0
  5. plans/TEMPLATE-USAGE-GUIDE.md +198 -0
  6. plans/__init__.py +1 -0
  7. plans/abandoned/compaction-agent-system/0-Overview.md +123 -0
  8. plans/abandoned/compaction-agent-system/agents-index-update-plan.md +109 -0
  9. plans/abandoned/compaction-agent-system/compacted_state.md +85 -0
  10. plans/abandoned/compaction-agent-system/implementation-plan.md +107 -0
  11. plans/abandoned/compaction-agent-system/system-validation-report.md +159 -0
  12. plans/abandoned/compaction-agent-system/usage-guide.md +210 -0
  13. plans/abandoned/hook-system-enhancement/0-Overview.md +214 -0
  14. plans/abandoned/hook-system-enhancement/1-Phase1-Core-Infrastructure.md +313 -0
  15. plans/abandoned/hook-system-enhancement/2-Phase2-Intelligent-Testing.md +385 -0
  16. plans/abandoned/hook-system-enhancement/3-Phase3-Physics-Validation.md +444 -0
  17. plans/abandoned/hook-system-enhancement/4-Phase4-Performance-Monitoring.md +458 -0
  18. plans/abandoned/hook-system-enhancement/5-Phase5-Developer-Experience.md +532 -0
  19. plans/abandoned/hook-system-enhancement/6-Implementation-Timeline.md +274 -0
  20. plans/abandoned/hook-system-enhancement/7-Risk-Management.md +376 -0
  21. plans/abandoned/hook-system-enhancement/8-Testing-Strategy.md +579 -0
  22. plans/abandoned/readthedocs-automation/0-Overview.md +247 -0
  23. plans/abandoned/readthedocs-automation/1-Emergency-Documentation-Fixes.md +270 -0
  24. plans/abandoned/readthedocs-automation/2-Template-System-Enhancement.md +811 -0
  25. plans/abandoned/readthedocs-automation/3-Quality-Audit-ReadTheDocs-Integration.md +844 -0
  26. plans/abandoned/readthedocs-automation/4-Plan-Consolidation-Cleanup.md +632 -0
  27. plans/abandoned/readthedocs-automation/9-Closeout.md +207 -0
  28. plans/abandoned/readthedocs-automation/ABANDONMENT_REASON.md +72 -0
  29. plans/cicd-architecture-redesign/0-Overview.md +193 -0
  30. plans/cicd-architecture-redesign/1-Workflow-Creation.md +103 -0
  31. plans/cicd-architecture-redesign/2-Version-Detection.md +123 -0
  32. plans/cicd-architecture-redesign/3-Deployment-Gates.md +169 -0
  33. plans/cicd-architecture-redesign/4-RC-Testing.md +194 -0
  34. plans/cicd-architecture-redesign/5-TestPyPI-Validation.md +264 -0
  35. plans/cicd-architecture-redesign/6-Production-Release.md +263 -0
  36. plans/cicd-architecture-redesign/7-Cleanup.md +243 -0
  37. plans/cicd-architecture-redesign/8-Documentation.md +285 -0
  38. plans/cicd-architecture-redesign/Closeout.md +225 -0
  39. plans/closeout-template.md +259 -0
  40. plans/completed/circular-import-audit/0-Overview.md +152 -0
  41. plans/completed/circular-import-audit/1-Static-Dependency-Analysis.md +62 -0
  42. plans/completed/circular-import-audit/2-Dynamic-Import-Testing.md +56 -0
  43. plans/completed/circular-import-audit/3-Performance-Impact-Assessment.md +56 -0
  44. plans/completed/circular-import-audit/4-Issue-Remediation.md +78 -0
  45. plans/completed/circular-import-audit/5-Preventive-Infrastructure.md +89 -0
  46. plans/completed/claude-settings-ecosystem-alignment/0-Overview.md +162 -0
  47. plans/completed/claude-settings-ecosystem-alignment/1-Security-Foundation.md +148 -0
  48. plans/completed/claude-settings-ecosystem-alignment/2-Hook-Integration.md +158 -0
  49. plans/completed/claude-settings-ecosystem-alignment/3-Agent-System-Integration.md +177 -0
  50. plans/completed/claude-settings-ecosystem-alignment/4-Enhanced-Workflow-Automation.md +159 -0
  51. plans/completed/claude-settings-ecosystem-alignment/5-Validation-Monitoring.md +181 -0
  52. plans/completed/claude-settings-ecosystem-alignment/compacted_session_state.md +290 -0
  53. plans/completed/combined_plan_with_checklist_documentation/1-Overview-and-Goals.md +51 -0
  54. plans/completed/combined_plan_with_checklist_documentation/2-Toolchain-and-Hosting.md +69 -0
  55. plans/completed/combined_plan_with_checklist_documentation/3-Repository-Structure.md +61 -0
  56. plans/completed/combined_plan_with_checklist_documentation/4-Configuration-and-Standards.md +70 -0
  57. plans/completed/combined_plan_with_checklist_documentation/5-Documentation-Content.md +62 -0
  58. plans/completed/combined_plan_with_checklist_documentation/6-CI-CD-and-Validation.md +58 -0
  59. plans/completed/combined_plan_with_checklist_documentation/7-Maintenance.md +55 -0
  60. plans/completed/combined_test_plan_with_checklist_fitfunctions/0-Overview.md +135 -0
  61. plans/completed/combined_test_plan_with_checklist_fitfunctions/1-Common-fixtures.md +59 -0
  62. plans/completed/combined_test_plan_with_checklist_fitfunctions/10-power_laws.md +56 -0
  63. plans/completed/combined_test_plan_with_checklist_fitfunctions/2-core.py-FitFunction.md +118 -0
  64. plans/completed/combined_test_plan_with_checklist_fitfunctions/3-gaussians.py-Gaussian-GaussianNormalized-GaussianLn.md +69 -0
  65. plans/completed/combined_test_plan_with_checklist_fitfunctions/4-trend_fits.py-TrendFit.md +99 -0
  66. plans/completed/combined_test_plan_with_checklist_fitfunctions/5-plots.py-FFPlot.md +98 -0
  67. plans/completed/combined_test_plan_with_checklist_fitfunctions/6-tex_info.py-TeXinfo.md +79 -0
  68. plans/completed/combined_test_plan_with_checklist_fitfunctions/7-Justification.md +49 -0
  69. plans/completed/combined_test_plan_with_checklist_fitfunctions/8-exponentials.md +64 -0
  70. plans/completed/combined_test_plan_with_checklist_fitfunctions/9-lines.md +58 -0
  71. plans/completed/combined_test_plan_with_checklist_plotting/0-Overview.md +142 -0
  72. plans/completed/combined_test_plan_with_checklist_plotting/1-base.py.md +90 -0
  73. plans/completed/combined_test_plan_with_checklist_plotting/10-labels-special.py.md +102 -0
  74. plans/completed/combined_test_plan_with_checklist_plotting/11-labels-chemistry.py.md +212 -0
  75. plans/completed/combined_test_plan_with_checklist_plotting/12-labels-composition.py.md +242 -0
  76. plans/completed/combined_test_plan_with_checklist_plotting/13-labels-datetime.py.md +247 -0
  77. plans/completed/combined_test_plan_with_checklist_plotting/14-labels-elemental_abundance.py.md +274 -0
  78. plans/completed/combined_test_plan_with_checklist_plotting/15-visual-validation.md +256 -0
  79. plans/completed/combined_test_plan_with_checklist_plotting/16-integration-testing.md +266 -0
  80. plans/completed/combined_test_plan_with_checklist_plotting/17-performance-benchmarks.md +267 -0
  81. plans/completed/combined_test_plan_with_checklist_plotting/18-Fixtures-and-Utilities.md +86 -0
  82. plans/completed/combined_test_plan_with_checklist_plotting/2-agg_plot.py.md +90 -0
  83. plans/completed/combined_test_plan_with_checklist_plotting/3-histograms.py.md +201 -0
  84. plans/completed/combined_test_plan_with_checklist_plotting/4-scatter.py.md +167 -0
  85. plans/completed/combined_test_plan_with_checklist_plotting/5-spiral.py.md +216 -0
  86. plans/completed/combined_test_plan_with_checklist_plotting/6-orbits.py.md +108 -0
  87. plans/completed/combined_test_plan_with_checklist_plotting/7-tools.py.md +86 -0
  88. plans/completed/combined_test_plan_with_checklist_plotting/8-select_data_from_figure.py.md +97 -0
  89. plans/completed/combined_test_plan_with_checklist_plotting/9-labels-base.py.md +88 -0
  90. plans/completed/combined_test_plan_with_checklist_solar_activity/.gitkeep +0 -0
  91. plans/completed/combined_test_plan_with_checklist_solar_activity/0-Overview.md +170 -0
  92. plans/completed/combined_test_plan_with_checklist_solar_activity/1-Package-Entry-Point-__init__.py.md +121 -0
  93. plans/completed/combined_test_plan_with_checklist_solar_activity/2-Core-Base-Classes-base.py.md +142 -0
  94. plans/completed/combined_test_plan_with_checklist_solar_activity/3-Plotting-Helpers-plots.py.md +123 -0
  95. plans/completed/combined_test_plan_with_checklist_solar_activity/4-LISIRD-Sub-package.md +119 -0
  96. plans/completed/combined_test_plan_with_checklist_solar_activity/5-Extrema-Calculator.md +103 -0
  97. plans/completed/combined_test_plan_with_checklist_solar_activity/6-Sunspot-Number-Sub-package.md +163 -0
  98. plans/completed/combined_test_plan_with_checklist_solar_activity/7-Sunspot-Number-Init.py.md +217 -0
  99. plans/completed/combined_test_plan_with_checklist_solar_activity/compacted_state.md +52 -0
  100. plans/completed/compaction-agent-modernization/0-Overview.md +156 -0
  101. plans/completed/compaction-agent-modernization/1-Architecture-Audit-Gap-Analysis.md +132 -0
  102. plans/completed/compaction-agent-modernization/2-Token-Baseline-Recalibration.md +153 -0
  103. plans/completed/compaction-agent-modernization/3-Agent-Reference-Updates.md +184 -0
  104. plans/completed/compaction-agent-modernization/4-Compression-Algorithm-Modernization.md +238 -0
  105. plans/completed/compaction-agent-modernization/5-Workflow-Integration-Streamlining.md +252 -0
  106. plans/completed/compaction-agent-modernization/6-Template-Structure-Optimization.md +240 -0
  107. plans/completed/compaction-agent-modernization/7-Integration-Testing-Validation.md +292 -0
  108. plans/completed/compaction-hook-enhancement/0-Overview.md +150 -0
  109. plans/completed/compaction-hook-enhancement/1-Token-Estimation-Enhancement.md +179 -0
  110. plans/completed/compaction-hook-enhancement/2-Compression-Intelligence.md +294 -0
  111. plans/completed/compaction-hook-enhancement/3-Git-Integration-Metadata.md +310 -0
  112. plans/completed/compaction-hook-enhancement/4-Session-Continuity-Features.md +358 -0
  113. plans/completed/compaction-hook-enhancement/5-Testing-Strategy.md +404 -0
  114. plans/completed/compaction-hook-enhancement/6-Integration-Roadmap.md +319 -0
  115. plans/completed/compaction-hook-enhancement/compacted_state.md +142 -0
  116. plans/completed/docstring-audit-enhancement/0-Overview.md +274 -0
  117. plans/completed/docstring-audit-enhancement/1-Infrastructure-Setup-and-Validation-Tools.md +206 -0
  118. plans/completed/docstring-audit-enhancement/2-Core-Physics-Modules-Enhancement.md +237 -0
  119. plans/completed/docstring-audit-enhancement/3-Fitfunctions-Mathematical-Modules-Enhancement.md +188 -0
  120. plans/completed/docstring-audit-enhancement/4-Plotting-Visualization-Modules-Enhancement.md +243 -0
  121. plans/completed/docstring-audit-enhancement/5-Specialized-Modules-Enhancement.md +216 -0
  122. plans/completed/docstring-audit-enhancement/6-Validation-and-Integration.md +216 -0
  123. plans/completed/fitfunctions-testing-implementation/0-Overview.md +130 -0
  124. plans/completed/fitfunctions-testing-implementation/1-Test-Infrastructure-Setup.md +79 -0
  125. plans/completed/fitfunctions-testing-implementation/2-Common-Fixtures-Test-Utilities.md +104 -0
  126. plans/completed/fitfunctions-testing-implementation/3-Core-FitFunction-Testing.md +168 -0
  127. plans/completed/fitfunctions-testing-implementation/4-Specialized-Function-Classes.md +210 -0
  128. plans/completed/fitfunctions-testing-implementation/5-Advanced-Classes-Testing.md +214 -0
  129. plans/completed/fitfunctions-testing-implementation/6-Plotting-Integration-Testing.md +231 -0
  130. plans/completed/fitfunctions-testing-implementation/7-Extended-Coverage-BONUS.md +184 -0
  131. plans/completed/numpy-docstring-conversion-plan/numpy-docstring-conversion-plan.md +118 -0
  132. plans/completed/pr-review-remediation/0-Overview.md +138 -0
  133. plans/completed/pr-review-remediation/1-Critical-Safety-Improvements.md +179 -0
  134. plans/completed/pr-review-remediation/2-Smart-Timeouts-Validation.md +399 -0
  135. plans/completed/pr-review-remediation/3-Enhanced-GitHub-Integration.md +258 -0
  136. plans/completed/pr-review-remediation/compacted_state.md +66 -0
  137. plans/completed/python-310-migration/0-Overview.md +390 -0
  138. plans/completed/python-310-migration/1-Planning-Setup.md +164 -0
  139. plans/completed/python-310-migration/2-Implementation.md +256 -0
  140. plans/completed/python-310-migration/3-Testing-Validation.md +335 -0
  141. plans/completed/python-310-migration/4-Documentation-Release.md +274 -0
  142. plans/completed/python-310-migration/5-Closeout.md +252 -0
  143. plans/completed/requirements-management-consolidation/0-Overview.md +118 -0
  144. plans/completed/requirements-management-consolidation/1-Documentation-Validation-Environment-Setup.md +116 -0
  145. plans/completed/requirements-management-consolidation/2-Requirements-Consolidation.md +161 -0
  146. plans/completed/requirements-management-consolidation/3-Workflow-Automation-Final-Integration.md +196 -0
  147. plans/completed/single-ecosystem-plan-implementation/0-Overview.md +83 -0
  148. plans/completed/single-ecosystem-plan-implementation/1-Plan-Preservation-Session-Management.md +38 -0
  149. plans/completed/single-ecosystem-plan-implementation/2-File-Structure-Optimization.md +43 -0
  150. plans/completed/single-ecosystem-plan-implementation/3-Plan-Migration-Archive-Setup.md +82 -0
  151. plans/completed/single-ecosystem-plan-implementation/4-Agent-System-Transformation.md +108 -0
  152. plans/completed/single-ecosystem-plan-implementation/5-Template-System-Enhancement.md +131 -0
  153. plans/completed/single-ecosystem-plan-implementation/6-Final-Validation-Testing.md +120 -0
  154. plans/completed/test-directory-consolidation/0-Overview.md +51 -0
  155. plans/completed/test-directory-consolidation/1-Structure-Preparation.md +82 -0
  156. plans/completed/test-directory-consolidation/2-File-Migration.md +100 -0
  157. plans/completed/test-directory-consolidation/3-Import-Transformation.md +117 -0
  158. plans/completed/test-directory-consolidation/4-Configuration-Consolidation.md +140 -0
  159. plans/completed/test-directory-consolidation/5-Validation.md +152 -0
  160. plans/completed/test-directory-consolidation/6-Cleanup.md +156 -0
  161. plans/completed/test-planning-agents-architecture/0-Overview.md +79 -0
  162. plans/completed/test-planning-agents-architecture/1-Branch-Isolation-Testing.md +49 -0
  163. plans/completed/test-planning-agents-architecture/2-Cross-Branch-Coordination.md +51 -0
  164. plans/completed/test-planning-agents-architecture/3-Merge-Workflow-Testing.md +48 -0
  165. plans/deployment-semver-pypi-rtd/0-Overview.md +463 -0
  166. plans/deployment-semver-pypi-rtd/1-Semantic-Versioning-Foundation.md +136 -0
  167. plans/deployment-semver-pypi-rtd/2-PyPI-Deployment-Infrastructure.md +168 -0
  168. plans/deployment-semver-pypi-rtd/3-Release-Automation.md +214 -0
  169. plans/deployment-semver-pypi-rtd/4-Plan-Closeout.md +543 -0
  170. plans/deployment-semver-pypi-rtd/compacted_session_state.md +172 -0
  171. plans/deployment-semver-pypi-rtd/compacted_state.md +131 -0
  172. plans/documentation-code-audit/0-Overview.md +393 -0
  173. plans/documentation-code-audit/1-Discovery-Inventory.md +183 -0
  174. plans/documentation-code-audit/2-Execution-Environment-Setup.md +263 -0
  175. plans/documentation-code-audit/3-Systematic-Validation.md +322 -0
  176. plans/documentation-code-audit/4-Code-Example-Remediation.md +358 -0
  177. plans/documentation-code-audit/5-Physics-MultiIndex-Compliance.md +464 -0
  178. plans/documentation-code-audit/6-Doctest-Integration.md +523 -0
  179. plans/documentation-code-audit/7-Reporting-Documentation.md +498 -0
  180. plans/documentation-code-audit/8-Closeout.md +456 -0
  181. plans/documentation-rebuild-session/compacted_state.md +109 -0
  182. plans/documentation-rendering-fixes/0-Overview.md +104 -0
  183. plans/documentation-rendering-fixes/1-Sphinx-Build-Diagnostics-Warning-Audit.md +101 -0
  184. plans/documentation-rendering-fixes/2-Configuration-Infrastructure-Fixes.md +113 -0
  185. plans/documentation-rendering-fixes/3-Docstring-Syntax-Audit-Repair.md +131 -0
  186. plans/documentation-rendering-fixes/4-HTML-Page-Rendering-Verification.md +113 -0
  187. plans/documentation-rendering-fixes/5-Advanced-Documentation-Quality-Assurance.md +119 -0
  188. plans/documentation-rendering-fixes/6-Documentation-Build-Optimization-Testing.md +129 -0
  189. plans/documentation-rendering-fixes/compacted_state.md +132 -0
  190. plans/documentation-template-fix/0-Overview.md +197 -0
  191. plans/documentation-template-fix/1-Template-System-Analysis.md +269 -0
  192. plans/documentation-template-fix/2-Template-Modification.md +609 -0
  193. plans/documentation-template-fix/3-Build-System-Integration.md +766 -0
  194. plans/documentation-template-fix/4-Testing-Validation.md +1399 -0
  195. plans/documentation-template-fix/5-Documentation-Training.md +602 -0
  196. plans/documentation-workflow-fix/0-Overview.md +222 -0
  197. plans/documentation-workflow-fix/1-Immediate-Fixes.md +238 -0
  198. plans/documentation-workflow-fix/2-Configuration-Setup.md +298 -0
  199. plans/documentation-workflow-fix/3-Pre-commit-Integration.md +382 -0
  200. plans/documentation-workflow-fix/4-Workflow-Improvements.md +446 -0
  201. plans/documentation-workflow-fix/5-Documentation-and-Training.md +527 -0
  202. plans/duplicate-object-warnings-fix-plan.md +130 -0
  203. plans/github-issues-migration/0-Overview.md +510 -0
  204. plans/github-issues-migration/1-Foundation-Label-System.md +180 -0
  205. plans/github-issues-migration/2-Migration-Tool-Rewrite.md +235 -0
  206. plans/github-issues-migration/3-CLI-Integration-Automation.md +169 -0
  207. plans/github-issues-migration/4-Validated-Migration.md +252 -0
  208. plans/github-issues-migration/5-Documentation-Training.md +171 -0
  209. plans/github-issues-migration/6-Closeout.md +179 -0
  210. plans/github-workflows-repair/repair-plan.md +299 -0
  211. plans/issues_from_plans.py +342 -0
  212. plans/pr-270-doc-validation-fixes/0-Overview.md +354 -0
  213. plans/pr-270-doc-validation-fixes/1-Critical-PR-Fixes.md +117 -0
  214. plans/pr-270-doc-validation-fixes/2-Framework-Right-Sizing.md +129 -0
  215. plans/pr-270-doc-validation-fixes/3-Sustainable-Documentation.md +126 -0
  216. plans/pr-270-doc-validation-fixes/4-Closeout-Migration.md +143 -0
  217. plans/pr-270-doc-validation-fixes/PLAN_COMPLETED.md +149 -0
  218. plans/python-310-migration/0-Overview.md +390 -0
  219. plans/python-310-migration/1-Planning-Setup.md +164 -0
  220. plans/python-310-migration/2-Implementation.md +256 -0
  221. plans/python-310-migration/3-Testing-Validation.md +335 -0
  222. plans/python-310-migration/4-Documentation-Release.md +274 -0
  223. plans/python-310-migration/5-Closeout.md +252 -0
  224. plans/readthedocs-simplified/0-Overview.md +243 -0
  225. plans/readthedocs-simplified/1-Immediate-Fixes.md +216 -0
  226. plans/readthedocs-simplified/2-Template-Simplification.md +278 -0
  227. plans/readthedocs-simplified/3-ReadTheDocs-Setup.md +298 -0
  228. plans/readthedocs-simplified/4-Testing-Validation.md +328 -0
  229. plans/readthedocs-simplified/5-Closeout.md +231 -0
  230. plans/readthedocs-simplified/compacted_state.md +127 -0
  231. plans/session-compaction-2025-08-12/compacted_state.md +114 -0
  232. plans/session-compaction-2025-08-13/compacted_state.md +145 -0
  233. plans/session-continuity-protocol/0-Overview.md +35 -0
  234. plans/session-continuity-protocol/1-Core-Principles-Framework.md +40 -0
  235. plans/session-continuity-protocol/2-Pre-Session-Validation-System.md +79 -0
  236. plans/session-continuity-protocol/3-Context-Switching-Prevention.md +87 -0
  237. plans/session-continuity-protocol/4-Progress-Tracking-Recovery.md +100 -0
  238. plans/sphinx-warnings-analysis.md +222 -0
  239. plans/systemprompt-optimization/0-Overview.md +447 -0
  240. plans/systemprompt-optimization/1-Deploy-SystemPrompt.md +114 -0
  241. plans/systemprompt-optimization/2-Documentation-Alignment.md +198 -0
  242. plans/systemprompt-optimization/3-Monitoring-Infrastructure.md +396 -0
  243. plans/systemprompt-optimization/4-Implementation-Script.md +450 -0
  244. plans/systemprompt-optimization/9-Closeout.md +165 -0
  245. plans/systemprompt-optimization/compacted_state.md +143 -0
  246. plans/template-value-propositions/0-Overview.md +357 -0
  247. plans/template-value-propositions/1-Value-Proposition-Framework-Design.md +144 -0
  248. plans/template-value-propositions/2-Plan-Template-Enhancement.md +178 -0
  249. plans/template-value-propositions/3-Value-Generator-Hook-Implementation.md +291 -0
  250. plans/template-value-propositions/4-Value-Validator-Hook-Implementation.md +274 -0
  251. plans/template-value-propositions/5-Documentation-Agent-Updates.md +219 -0
  252. plans/template-value-propositions/6-Integration-Testing-Validation.md +247 -0
  253. plans/tests-audit/0-Overview.md +410 -0
  254. plans/tests-audit/1-Discovery-Inventory.md +170 -0
  255. plans/tests-audit/2-Physics-Validation-Audit.md +195 -0
  256. plans/tests-audit/3-Architecture-Compliance.md +195 -0
  257. plans/tests-audit/4-Numerical-Stability-Analysis.md +203 -0
  258. plans/tests-audit/5-Documentation-Enhancement.md +220 -0
  259. plans/tests-audit/6-Audit-Deliverables.md +220 -0
  260. plans/tests-audit/7-Closeout.md +252 -0
  261. plans/tests-audit/artifacts/ARCHITECTURE_COMPLIANCE_REPORT.md +315 -0
  262. plans/tests-audit/artifacts/ARCHITECTURE_RECOMMENDATIONS.md +943 -0
  263. plans/tests-audit/artifacts/COMPREHENSIVE_AUDIT_REPORT.md +356 -0
  264. plans/tests-audit/artifacts/CONTRIBUTING_ENHANCED_TEMPLATE.md +419 -0
  265. plans/tests-audit/artifacts/COVERAGE_GAP_ANALYSIS.md +152 -0
  266. plans/tests-audit/artifacts/DOCUMENTATION_ENHANCEMENT_REPORT.md +502 -0
  267. plans/tests-audit/artifacts/EXECUTIVE_AUDIT_SUMMARY.md +129 -0
  268. plans/tests-audit/artifacts/IMPLEMENTATION_ROADMAP.md +647 -0
  269. plans/tests-audit/artifacts/NUMERICAL_RECOMMENDATIONS.md +739 -0
  270. plans/tests-audit/artifacts/NUMERICAL_STABILITY_GUIDE_TEMPLATE.rst +451 -0
  271. plans/tests-audit/artifacts/NUMERICAL_STABILITY_REPORT.md +301 -0
  272. plans/tests-audit/artifacts/PHASE_3_SUMMARY.md +280 -0
  273. plans/tests-audit/artifacts/PHASE_4_SUMMARY.md +229 -0
  274. plans/tests-audit/artifacts/PHASE_5_SUMMARY.md +292 -0
  275. plans/tests-audit/artifacts/PHASE_6_CLOSEOUT.md +278 -0
  276. plans/tests-audit/artifacts/PHYSICS_GUIDE_TEMPLATE.rst +268 -0
  277. plans/tests-audit/artifacts/PHYSICS_VALIDATION_REPORT.md +235 -0
  278. plans/tests-audit/artifacts/TECHNICAL_DELIVERABLES_PACKAGE.md +2502 -0
  279. plans/tests-audit/artifacts/TEST_INVENTORY.csv +1204 -0
  280. plans/tests-audit/artifacts/TEST_INVENTORY.md +135 -0
  281. plans/tests-audit/artifacts/test_discovery_analysis.py +231 -0
  282. plans/tests-audit/artifacts/test_parser.py +395 -0
  283. solarwindpy/README.md +3 -0
  284. solarwindpy/Untitled.ipynb +54 -0
  285. solarwindpy/__init__.py +74 -0
  286. solarwindpy/core/__init__.py +23 -0
  287. solarwindpy/core/alfvenic_turbulence.py +804 -0
  288. solarwindpy/core/base.py +267 -0
  289. solarwindpy/core/ions.py +309 -0
  290. solarwindpy/core/plasma.py +2133 -0
  291. solarwindpy/core/spacecraft.py +256 -0
  292. solarwindpy/core/tensor.py +90 -0
  293. solarwindpy/core/units_constants.py +199 -0
  294. solarwindpy/core/vector.py +328 -0
  295. solarwindpy/fitfunctions/__init__.py +20 -0
  296. solarwindpy/fitfunctions/core.py +734 -0
  297. solarwindpy/fitfunctions/exponentials.py +188 -0
  298. solarwindpy/fitfunctions/gaussians.py +264 -0
  299. solarwindpy/fitfunctions/lines.py +116 -0
  300. solarwindpy/fitfunctions/moyal.py +71 -0
  301. solarwindpy/fitfunctions/plots.py +751 -0
  302. solarwindpy/fitfunctions/power_laws.py +209 -0
  303. solarwindpy/fitfunctions/tex_info.py +568 -0
  304. solarwindpy/fitfunctions/trend_fits.py +482 -0
  305. solarwindpy/instabilities/__init__.py +16 -0
  306. solarwindpy/instabilities/beta_ani.py +82 -0
  307. solarwindpy/instabilities/verscharen2016.py +631 -0
  308. solarwindpy/plotting/__init__.py +33 -0
  309. solarwindpy/plotting/agg_plot.py +489 -0
  310. solarwindpy/plotting/base.py +465 -0
  311. solarwindpy/plotting/hist1d.py +405 -0
  312. solarwindpy/plotting/hist2d.py +1035 -0
  313. solarwindpy/plotting/histograms.py +1845 -0
  314. solarwindpy/plotting/labels/__init__.py +104 -0
  315. solarwindpy/plotting/labels/base.py +686 -0
  316. solarwindpy/plotting/labels/chemistry.py +19 -0
  317. solarwindpy/plotting/labels/composition.py +100 -0
  318. solarwindpy/plotting/labels/datetime.py +235 -0
  319. solarwindpy/plotting/labels/elemental_abundance.py +73 -0
  320. solarwindpy/plotting/labels/special.py +794 -0
  321. solarwindpy/plotting/orbits.py +515 -0
  322. solarwindpy/plotting/scatter.py +99 -0
  323. solarwindpy/plotting/select_data_from_figure.py +329 -0
  324. solarwindpy/plotting/spiral.py +980 -0
  325. solarwindpy/plotting/tools.py +434 -0
  326. solarwindpy/scripts/__init__.py +1 -0
  327. solarwindpy/scripts/logs/.gitignore +1 -0
  328. solarwindpy/solar_activity/__init__.py +53 -0
  329. solarwindpy/solar_activity/base.py +605 -0
  330. solarwindpy/solar_activity/lisird/__init__.py +3 -0
  331. solarwindpy/solar_activity/lisird/extrema_calculator.py +394 -0
  332. solarwindpy/solar_activity/lisird/lisird.py +319 -0
  333. solarwindpy/solar_activity/plots.py +116 -0
  334. solarwindpy/solar_activity/sunspot_number/.DS_Store +0 -0
  335. solarwindpy/solar_activity/sunspot_number/__init__.py +3 -0
  336. solarwindpy/solar_activity/sunspot_number/sidc.py +556 -0
  337. solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv +72 -0
  338. solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv.silso +72 -0
  339. solarwindpy/tools/__init__.py +162 -0
  340. solarwindpy-0.1.0.dist-info/METADATA +181 -0
  341. solarwindpy-0.1.0.dist-info/RECORD +409 -0
  342. {solarwindpy-0.0.1.dev0.dist-info → solarwindpy-0.1.0.dist-info}/WHEEL +1 -1
  343. solarwindpy-0.1.0.dist-info/licenses/LICENSE.rst +32 -0
  344. solarwindpy-0.1.0.dist-info/top_level.txt +3 -0
  345. tests/__init__.py +1 -0
  346. tests/conftest.py +10 -0
  347. tests/core/__init__.py +1 -0
  348. tests/core/test_alfvenic_turbulence.py +544 -0
  349. tests/core/test_base.py +112 -0
  350. tests/core/test_base_head_tail.py +29 -0
  351. tests/core/test_base_mi_tuples.py +11 -0
  352. tests/core/test_core_verify_datetimeindex.py +32 -0
  353. tests/core/test_ions.py +325 -0
  354. tests/core/test_plasma.py +2581 -0
  355. tests/core/test_plasma_io.py +12 -0
  356. tests/core/test_quantities.py +507 -0
  357. tests/core/test_spacecraft.py +210 -0
  358. tests/core/test_units_constants.py +22 -0
  359. tests/data/epoch.csv +4 -0
  360. tests/data/plasma.csv +4 -0
  361. tests/data/spacecraft.csv +4 -0
  362. tests/fitfunctions/conftest.py +60 -0
  363. tests/fitfunctions/test_core.py +193 -0
  364. tests/fitfunctions/test_exponentials.py +342 -0
  365. tests/fitfunctions/test_gaussians.py +142 -0
  366. tests/fitfunctions/test_lines.py +349 -0
  367. tests/fitfunctions/test_moyal.py +258 -0
  368. tests/fitfunctions/test_plots.py +258 -0
  369. tests/fitfunctions/test_power_laws.py +365 -0
  370. tests/fitfunctions/test_tex_info.py +183 -0
  371. tests/fitfunctions/test_trend_fit_properties.py +31 -0
  372. tests/fitfunctions/test_trend_fits.py +244 -0
  373. tests/plotting/__init__.py +1 -0
  374. tests/plotting/labels/__init__.py +1 -0
  375. tests/plotting/labels/test_chemistry.py +243 -0
  376. tests/plotting/labels/test_composition.py +345 -0
  377. tests/plotting/labels/test_datetime.py +445 -0
  378. tests/plotting/labels/test_elemental_abundance.py +366 -0
  379. tests/plotting/labels/test_init.py +66 -0
  380. tests/plotting/labels/test_labels_base.py +347 -0
  381. tests/plotting/labels/test_special.py +550 -0
  382. tests/plotting/test_agg_plot.py +602 -0
  383. tests/plotting/test_base.py +752 -0
  384. tests/plotting/test_fixtures_utilities.py +775 -0
  385. tests/plotting/test_histograms.py +546 -0
  386. tests/plotting/test_integration.py +675 -0
  387. tests/plotting/test_orbits.py +435 -0
  388. tests/plotting/test_performance.py +708 -0
  389. tests/plotting/test_scatter.py +752 -0
  390. tests/plotting/test_select_data_from_figure.py +1209 -0
  391. tests/plotting/test_spiral.py +573 -0
  392. tests/plotting/test_tools.py +607 -0
  393. tests/plotting/test_visual_validation.py +465 -0
  394. tests/solar_activity/__init__.py +1 -0
  395. tests/solar_activity/lisird/__init__.py +1 -0
  396. tests/solar_activity/lisird/test_extrema_calculator.py +593 -0
  397. tests/solar_activity/lisird/test_lisird_id.py +187 -0
  398. tests/solar_activity/sunspot_number/__init__.py +1 -0
  399. tests/solar_activity/sunspot_number/test_init.py +399 -0
  400. tests/solar_activity/sunspot_number/test_sidc.py +465 -0
  401. tests/solar_activity/sunspot_number/test_sidc_id.py +223 -0
  402. tests/solar_activity/sunspot_number/test_sidc_loader.py +275 -0
  403. tests/solar_activity/sunspot_number/test_ssn_extrema.py +406 -0
  404. tests/solar_activity/test_base.py +656 -0
  405. tests/solar_activity/test_init.py +396 -0
  406. tests/solar_activity/test_plots.py +371 -0
  407. tests/test_circular_imports.py +408 -0
  408. tests/test_issue_titles.py +25 -0
  409. tests/test_statusline.py +298 -0
  410. solarwindpy-0.0.1.dev0.dist-info/METADATA +0 -14
  411. solarwindpy-0.0.1.dev0.dist-info/RECORD +0 -4
  412. solarwindpy-0.0.1.dev0.dist-info/top_level.txt +0 -1
@@ -0,0 +1,647 @@
1
+ # Implementation Roadmap: Physics-Focused Test Suite Enhancement
2
+ **SolarWindPy Scientific Software Quality Transformation Plan**
3
+
4
+ ## Executive Summary
5
+
6
+ This roadmap provides a structured implementation plan for transforming SolarWindPy through the systematic enhancement identified in our comprehensive 6-phase audit. The plan prioritizes **critical vulnerability remediation** while establishing sustainable development practices for ongoing scientific software quality assurance.
7
+
8
+ **Total Implementation Timeline**: 12-16 weeks
9
+ **Total Effort Estimate**: 240-320 hours
10
+ **Expected ROI**: +4.5% test coverage, elimination of physics-breaking errors, scientific credibility enhancement
11
+
12
+ ## Implementation Phases Overview
13
+
14
+ ### Phase 1: Critical Vulnerability Remediation (Weeks 1-2) - PRIORITY 1
15
+ **Focus**: Eliminate physics-breaking calculation errors
16
+ **Status**: IMMEDIATE ACTION REQUIRED
17
+ **Success Criteria**: Zero tolerance for infinite/NaN results in physics calculations
18
+
19
+ ### Phase 2: Documentation & User Safety (Weeks 3-6) - PRIORITY 2
20
+ **Focus**: Comprehensive user guidance and safety framework
21
+ **Status**: HIGH PRIORITY - Prevent user calculation errors
22
+ **Success Criteria**: Complete physics calculation documentation with safety warnings
23
+
24
+ ### Phase 3: Architecture & Performance (Weeks 7-9) - PRIORITY 3
25
+ **Focus**: MultiIndex optimization and large-scale reliability
26
+ **Status**: MEDIUM PRIORITY - Performance enhancement
27
+ **Success Criteria**: 15-25% performance improvement with maintained accuracy
28
+
29
+ ### Phase 4: Quality Assurance & Integration (Weeks 10-12) - PRIORITY 4
30
+ **Focus**: Long-term sustainability framework
31
+ **Status**: LOWER PRIORITY - Systematic quality assurance
32
+ **Success Criteria**: Automated validation and continuous improvement
33
+
34
+ ### Phase 5: Community & Educational Integration (Weeks 13-16) - OPTIONAL
35
+ **Focus**: Scientific community engagement and adoption
36
+ **Status**: ENHANCEMENT - Community building
37
+ **Success Criteria**: Educational partnerships and scientific recognition
38
+
39
+ ## Detailed Implementation Plan
40
+
41
+ ## Phase 1: Critical Vulnerability Remediation (Weeks 1-2)
42
+
43
+ ### Week 1: Zero Density & Negative Energy Protection
44
+
45
+ #### Day 1-2: Assessment & Planning (16 hours)
46
+ **Responsibilities**: Lead Developer + Physics Expert
47
+ **Tasks**:
48
+ 1. **Code Audit**: Complete review of all Alfvén speed calculation locations
49
+ - Search codebase for `rho.pow(-0.5)` patterns
50
+ - Identify all thermal speed calculation functions
51
+ - Map dependency chain for affected modules
52
+
53
+ 2. **Impact Analysis**: Quantify affected functions and user workflows
54
+ - Catalog all functions requiring protection
55
+ - Estimate user workflow disruption
56
+ - Plan backward compatibility strategies
57
+
58
+ **Deliverables**:
59
+ - [ ] Comprehensive vulnerability location map
60
+ - [ ] User impact assessment report
61
+ - [ ] Implementation priority matrix
62
+
63
+ #### Day 3-5: Core Protection Implementation (24 hours)
64
+ **Responsibilities**: Senior Developer + Physics Validator Agent
65
+ **Tasks**:
66
+ 1. **Zero Density Protection Framework**:
67
+ ```python
68
+ # Implementation in solarwindpy/core/plasma.py
69
+ def _validate_density(density, min_threshold=1e-23):
70
+ """Validate plasma density for physics calculations."""
71
+ if np.any(density <= min_threshold):
72
+ invalid_count = np.sum(density <= min_threshold)
73
+ raise ValueError(f"{invalid_count} density values ≤ {min_threshold} kg/m³")
74
+ return True
75
+ ```
76
+
77
+ 2. **Negative Energy Protection Framework**:
78
+ ```python
79
+ # Implementation in thermal calculation functions
80
+ def _validate_thermal_energy(energy):
81
+ """Validate thermal energy for speed calculations."""
82
+ if np.any(energy <= 0):
83
+ invalid_count = np.sum(energy <= 0)
84
+ raise ValueError(f"{invalid_count} thermal energy values ≤ 0")
85
+ return True
86
+ ```
87
+
88
+ **Deliverables**:
89
+ - [ ] Zero density protection implemented in all Alfvén speed functions
90
+ - [ ] Negative energy validation integrated in all thermal speed functions
91
+ - [ ] Backward compatibility validation completed
92
+ - [ ] Initial testing of protected functions
93
+
94
+ ### Week 2: Numerical Stability Test Framework
95
+
96
+ #### Day 6-8: Test Implementation (24 hours)
97
+ **Responsibilities**: TestEngineer Agent + NumericalStabilityGuard Agent
98
+ **Tasks**:
99
+ 1. **Critical Vulnerability Tests** (34 tests total):
100
+ ```python
101
+ # tests/test_numerical_stability.py
102
+ class TestCriticalVulnerabilities:
103
+ def test_alfven_speed_zero_density_protection(self):
104
+ """Test Alfvén speed rejects zero density."""
105
+ with pytest.raises(ValueError, match="density values ≤"):
106
+ plasma.alfven_speed(density=np.array([0.0, 1e-21]))
107
+
108
+ def test_thermal_speed_negative_energy_protection(self):
109
+ """Test thermal speed rejects negative energy."""
110
+ with pytest.raises(ValueError, match="thermal energy values ≤ 0"):
111
+ plasma.thermal_speed(temperature=np.array([-100, 1e5]))
112
+ ```
113
+
114
+ 2. **Edge Case Validation Tests**:
115
+ - Minimum threshold boundary testing
116
+ - Mixed valid/invalid parameter arrays
117
+ - Precision preservation at boundaries
118
+ - Performance impact measurement
119
+
120
+ **Deliverables**:
121
+ - [ ] 34 numerical stability tests implemented and passing
122
+ - [ ] Edge case test coverage completed
123
+ - [ ] Performance regression validation
124
+ - [ ] Test integration with existing CI/CD
125
+
126
+ #### Day 9-10: Validation & Documentation (16 hours)
127
+ **Responsibilities**: Physics Expert + Technical Writer
128
+ **Tasks**:
129
+ 1. **Physics Validation**: Verify all protection frameworks maintain scientific accuracy
130
+ 2. **Performance Validation**: Ensure <5% overhead from validation
131
+ 3. **Critical Documentation**: User-facing warnings and developer guidance
132
+
133
+ **Deliverables**:
134
+ - [ ] Physics accuracy validation completed
135
+ - [ ] Performance impact assessment (<5% overhead confirmed)
136
+ - [ ] Critical vulnerability user warnings documented
137
+ - [ ] Developer implementation guidelines published
138
+
139
+ **Phase 1 Success Metrics**:
140
+ - ✅ Zero incidents of infinite Alfvén speeds in production
141
+ - ✅ Zero incidents of NaN thermal speeds in production
142
+ - ✅ 34 numerical stability tests passing in CI/CD
143
+ - ✅ <5% performance overhead from validation
144
+ - ✅ Backward compatibility maintained for valid usage patterns
145
+
146
+ ## Phase 2: Documentation & User Safety (Weeks 3-6)
147
+
148
+ ### Week 3: Physics Calculation User Guide
149
+
150
+ #### Core Physics Documentation (40 hours total)
151
+ **Responsibilities**: Physics Expert + Technical Writer + PlottingEngineer (for examples)
152
+
153
+ **Week 3 Tasks**:
154
+ 1. **Thermal Speed Documentation** (10 hours):
155
+ - Mathematical foundation: mw² = 2kT convention
156
+ - Valid parameter ranges and physical interpretation
157
+ - Example code with validation
158
+ - Common pitfalls and troubleshooting
159
+
160
+ 2. **Alfvén Speed Documentation** (10 hours):
161
+ - Physics theory: V_A = B/√(μ₀ρ) with multi-species considerations
162
+ - Critical density threshold warnings
163
+ - Magnetic field magnitude considerations
164
+ - Example calculations with safety validation
165
+
166
+ 3. **Plasma Frequency Documentation** (10 hours):
167
+ - Mathematical foundation for electron and ion frequencies
168
+ - Multi-species calculation procedures
169
+ - Expected result ranges and validation
170
+
171
+ 4. **Vector Operation Guidelines** (10 hours):
172
+ - Catastrophic cancellation warnings
173
+ - Precision-preserving calculation methods
174
+ - Mixed-scale component handling
175
+
176
+ **Deliverables**:
177
+ - [ ] `/docs/source/physics_guide.rst` - Complete physics calculation reference
178
+ - [ ] Enhanced examples with validation patterns
179
+ - [ ] Cross-references to numerical stability guide
180
+ - [ ] Physics theory validation with literature references
181
+
182
+ ### Week 4: Numerical Stability User Guide
183
+
184
+ #### User-Facing Stability Documentation (30 hours total)
185
+ **Responsibilities**: NumericalStabilityGuard Agent + Technical Writer
186
+
187
+ **Tasks**:
188
+ 1. **Numerical Limitations User Guide** (15 hours):
189
+ - Floating-point precision considerations
190
+ - Parameter range recommendations
191
+ - Edge case recognition and handling
192
+ - Error interpretation guidance
193
+
194
+ 2. **Parameter Validation Framework** (15 hours):
195
+ - Systematic validation procedures for users
196
+ - Quality checking workflows
197
+ - Troubleshooting guide for common issues
198
+ - Integration with data import procedures
199
+
200
+ **Deliverables**:
201
+ - [ ] `/docs/source/numerical_stability.rst` - Complete stability guidance
202
+ - [ ] User validation workflow documentation
203
+ - [ ] Troubleshooting guide with common solutions
204
+ - [ ] Integration examples for data analysis workflows
205
+
206
+ ### Week 5: API Documentation Enhancement
207
+
208
+ #### Enhanced Docstring Implementation (35 hours total)
209
+ **Responsibilities**: Development Team + Documentation Specialist
210
+
211
+ **Tasks**:
212
+ 1. **Critical Function Docstrings** (20 hours):
213
+ ```python
214
+ def alfven_speed(self, species=None):
215
+ """Calculate Alfvén speeds with numerical stability protection.
216
+
217
+ Parameters
218
+ ----------
219
+ species : str or list, optional
220
+ Ion species identifiers
221
+
222
+ Returns
223
+ -------
224
+ pandas.DataFrame
225
+ Alfvén speeds in m/s
226
+
227
+ Raises
228
+ ------
229
+ ValueError
230
+ When density values are below numerical stability threshold (1e-23 kg/m³)
231
+
232
+ .. warning::
233
+ Requires positive plasma density. Zero or negative density will
234
+ produce infinite results. Always validate density > 1e-23 kg/m³.
235
+
236
+ .. note::
237
+ Uses multi-species density: ρ_total = Σ(n_i × m_i)
238
+
239
+ Examples
240
+ --------
241
+ >>> plasma = swp.Plasma.from_file('data.csv')
242
+ >>> # Validate density before calculation
243
+ >>> valid_density = plasma.density.sum(axis=1) > 1e-23
244
+ >>> alfven_v = plasma.alfven_speed()[valid_density]
245
+ """
246
+ ```
247
+
248
+ 2. **Parameter Range Documentation** (15 hours):
249
+ - Valid input ranges for all physics functions
250
+ - Expected output ranges for result validation
251
+ - Cross-references to physics theory
252
+ - Links to numerical stability guidance
253
+
254
+ **Deliverables**:
255
+ - [ ] Enhanced docstrings for all critical physics functions
256
+ - [ ] Parameter range documentation integrated
257
+ - [ ] Sphinx documentation compilation validation
258
+ - [ ] API reference consistency verification
259
+
260
+ ### Week 6: Tutorial & Integration Examples
261
+
262
+ #### Comprehensive Example Development (25 hours total)
263
+ **Responsibilities**: Domain Expert + Educational Content Developer
264
+
265
+ **Tasks**:
266
+ 1. **Robust Tutorial Examples** (15 hours):
267
+ - Real-world solar wind analysis workflows
268
+ - Parameter validation integration
269
+ - Error handling and recovery procedures
270
+ - Best practices demonstration
271
+
272
+ 2. **Integration Workflow Documentation** (10 hours):
273
+ - Multi-module calculation procedures
274
+ - Large-scale dataset handling
275
+ - Performance optimization with validation
276
+ - Cross-validation with literature values
277
+
278
+ **Deliverables**:
279
+ - [ ] Enhanced `/docs/source/tutorial/quickstart.rst` with validation examples
280
+ - [ ] Advanced analysis workflow documentation
281
+ - [ ] Error handling and recovery tutorials
282
+ - [ ] Performance optimization guidance with safety
283
+
284
+ **Phase 2 Success Metrics**:
285
+ - ✅ Complete physics calculation documentation (85%+ coverage)
286
+ - ✅ User safety warnings integrated throughout documentation
287
+ - ✅ Systematic parameter validation procedures documented
288
+ - ✅ Enhanced API docstrings with stability warnings deployed
289
+ - ✅ Tutorial examples demonstrate robust analysis practices
290
+
291
+ ## Phase 3: Architecture & Performance (Weeks 7-9)
292
+
293
+ ### Week 7: MultiIndex Optimization Analysis
294
+
295
+ #### Performance Profiling & Optimization Strategy (30 hours total)
296
+ **Responsibilities**: DataFrameArchitect Agent + Performance Engineer
297
+
298
+ **Tasks**:
299
+ 1. **Current Performance Baseline** (15 hours):
300
+ - Comprehensive performance profiling of existing MultiIndex operations
301
+ - Memory usage analysis for large-scale datasets
302
+ - Query performance benchmarking
303
+ - Bottleneck identification in complex data access patterns
304
+
305
+ 2. **Optimization Strategy Development** (15 hours):
306
+ - Enhanced .xs() usage patterns for complex queries
307
+ - Strategic indexing improvements
308
+ - Memory-efficient data access procedures
309
+ - Large-scale dataset handling optimization
310
+
311
+ **Deliverables**:
312
+ - [ ] Comprehensive performance baseline report
313
+ - [ ] MultiIndex optimization strategy document
314
+ - [ ] Memory efficiency improvement plan (15-25% target)
315
+ - [ ] Scalability enhancement roadmap
316
+
317
+ ### Week 8: Implementation & Testing
318
+
319
+ #### Optimization Implementation (40 hours total)
320
+ **Responsibilities**: Senior Developer + DataFrameArchitect Agent
321
+
322
+ **Tasks**:
323
+ 1. **Core Optimization Implementation** (25 hours):
324
+ ```python
325
+ # Optimized data access patterns
326
+ def optimized_multi_level_query(data, measurement, component, species):
327
+ """Efficient MultiIndex querying with minimal copying."""
328
+ return data.xs((measurement, component, species),
329
+ level=['M', 'C', 'S'], drop_level=False)
330
+ ```
331
+
332
+ 2. **Performance Monitoring Integration** (15 hours):
333
+ - Automated performance regression testing
334
+ - Memory usage monitoring
335
+ - Query performance benchmarking
336
+ - Large dataset handling validation
337
+
338
+ **Deliverables**:
339
+ - [ ] Optimized MultiIndex access patterns implemented
340
+ - [ ] Performance monitoring framework deployed
341
+ - [ ] Memory efficiency improvements validated (target: 15-25%)
342
+ - [ ] Regression testing for performance optimization
343
+
344
+ ### Week 9: Integration & Validation
345
+
346
+ #### System Integration Testing (35 hours total)
347
+ **Responsibilities**: QA Engineer + Integration Specialist
348
+
349
+ **Tasks**:
350
+ 1. **Integration Testing** (20 hours):
351
+ - Cross-module performance validation
352
+ - Large-scale dataset testing
353
+ - Memory usage validation under load
354
+ - Performance regression testing
355
+
356
+ 2. **User Workflow Validation** (15 hours):
357
+ - Real-world usage pattern testing
358
+ - Performance impact on common workflows
359
+ - Backward compatibility verification
360
+ - User acceptance testing
361
+
362
+ **Deliverables**:
363
+ - [ ] Integration testing completed with 15-25% performance improvement
364
+ - [ ] Large-scale dataset handling validated
365
+ - [ ] User workflow performance improvement confirmed
366
+ - [ ] Architecture enhancement documentation updated
367
+
368
+ **Phase 3 Success Metrics**:
369
+ - ✅ 15-25% performance improvement in MultiIndex operations
370
+ - ✅ Memory usage optimization for large datasets
371
+ - ✅ Backward compatibility maintained
372
+ - ✅ Performance monitoring framework operational
373
+ - ✅ Scalability improvements validated
374
+
375
+ ## Phase 4: Quality Assurance & Integration (Weeks 10-12)
376
+
377
+ ### Week 10: Automated Validation Framework
378
+
379
+ #### CI/CD Integration & Automation (30 hours total)
380
+ **Responsibilities**: DevOps Engineer + Quality Assurance Specialist
381
+
382
+ **Tasks**:
383
+ 1. **Continuous Validation Integration** (15 hours):
384
+ - Physics validation tests in CI/CD pipeline
385
+ - Numerical stability regression testing
386
+ - Performance benchmarking automation
387
+ - Documentation consistency checking
388
+
389
+ 2. **Quality Gates Implementation** (15 hours):
390
+ - Pre-commit validation hooks
391
+ - Automated code quality checks
392
+ - Physics constraint validation
393
+ - Test coverage enforcement (95%+ requirement)
394
+
395
+ **Deliverables**:
396
+ - [ ] Automated physics validation in CI/CD
397
+ - [ ] Quality gates enforcing numerical stability standards
398
+ - [ ] Performance regression testing automation
399
+ - [ ] Documentation consistency validation
400
+
401
+ ### Week 11: Scientific Review Framework
402
+
403
+ #### Expert Review Process Establishment (25 hours total)
404
+ **Responsibilities**: Scientific Advisory Board + Documentation Specialist
405
+
406
+ **Tasks**:
407
+ 1. **Scientific Validation Framework** (15 hours):
408
+ - Expert review process for physics calculations
409
+ - Literature validation procedures
410
+ - Cross-validation with established codes
411
+ - Scientific accuracy assurance framework
412
+
413
+ 2. **Community Integration Planning** (10 hours):
414
+ - User feedback collection system
415
+ - Scientific community engagement strategy
416
+ - Educational partnership development
417
+ - Standards development leadership planning
418
+
419
+ **Deliverables**:
420
+ - [ ] Scientific review framework established
421
+ - [ ] Expert validation procedures documented
422
+ - [ ] Community engagement strategy developed
423
+ - [ ] Educational partnership framework established
424
+
425
+ ### Week 12: Final Integration & Testing
426
+
427
+ #### Comprehensive System Validation (35 hours total)
428
+ **Responsibilities**: Full Development Team + External Reviewers
429
+
430
+ **Tasks**:
431
+ 1. **End-to-End Testing** (20 hours):
432
+ - Complete workflow testing
433
+ - User acceptance testing
434
+ - Performance validation
435
+ - Scientific accuracy verification
436
+
437
+ 2. **Documentation Finalization** (15 hours):
438
+ - Complete documentation review
439
+ - Cross-reference validation
440
+ - User guide finalization
441
+ - Scientific accuracy verification
442
+
443
+ **Deliverables**:
444
+ - [ ] Complete system validation completed
445
+ - [ ] All documentation finalized and reviewed
446
+ - [ ] User acceptance criteria met
447
+ - [ ] Scientific accuracy verified by experts
448
+
449
+ **Phase 4 Success Metrics**:
450
+ - ✅ Automated quality assurance framework operational
451
+ - ✅ Scientific review process established
452
+ - ✅ 95%+ test coverage achieved
453
+ - ✅ Complete documentation validation
454
+ - ✅ Expert scientific accuracy verification
455
+
456
+ ## Phase 5: Community & Educational Integration (Weeks 13-16) - OPTIONAL
457
+
458
+ ### Weeks 13-14: Educational Partnerships
459
+
460
+ #### Academic Integration & Training Materials (40 hours total)
461
+ **Responsibilities**: Educational Content Developer + Academic Liaison
462
+
463
+ **Tasks**:
464
+ 1. **Educational Material Development** (20 hours):
465
+ - Classroom integration materials
466
+ - Workshop curriculum development
467
+ - Tutorial video creation
468
+ - Interactive example development
469
+
470
+ 2. **Academic Partnership Development** (20 hours):
471
+ - University collaboration establishment
472
+ - Research integration planning
473
+ - Student project frameworks
474
+ - Academic review and feedback integration
475
+
476
+ **Deliverables**:
477
+ - [ ] Educational materials for plasma physics courses
478
+ - [ ] Workshop curriculum and materials
479
+ - [ ] Academic partnership agreements
480
+ - [ ] Student project frameworks
481
+
482
+ ### Weeks 15-16: Community Leadership & Standards Development
483
+
484
+ #### Scientific Software Standards Leadership (40 hours total)
485
+ **Responsibilities**: Project Leadership + Standards Committee
486
+
487
+ **Tasks**:
488
+ 1. **Standards Development** (20 hours):
489
+ - Scientific Python package quality standards
490
+ - Numerical stability testing guidelines
491
+ - Physics validation best practices
492
+ - Community contribution frameworks
493
+
494
+ 2. **Community Engagement** (20 hours):
495
+ - Conference presentations
496
+ - Scientific publication preparation
497
+ - Community feedback integration
498
+ - Long-term sustainability planning
499
+
500
+ **Deliverables**:
501
+ - [ ] Scientific software quality standards published
502
+ - [ ] Community engagement program established
503
+ - [ ] Conference presentations and publications
504
+ - [ ] Long-term sustainability framework
505
+
506
+ ## Risk Management & Mitigation Strategies
507
+
508
+ ### Technical Risks
509
+
510
+ #### HIGH RISK: Implementation Complexity
511
+ - **Risk**: Complex physics validation introduces performance overhead
512
+ - **Mitigation**: Staged implementation with continuous performance monitoring
513
+ - **Timeline Impact**: +20% contingency in Phases 1-2
514
+ - **Success Criteria**: <5% performance overhead maintained
515
+
516
+ #### MEDIUM RISK: User Adoption
517
+ - **Risk**: Enhanced validation requirements may disrupt existing workflows
518
+ - **Mitigation**: Comprehensive backward compatibility and migration support
519
+ - **Timeline Impact**: +15% contingency in Phase 2 documentation
520
+ - **Success Criteria**: Smooth migration for 95%+ existing users
521
+
522
+ #### LOW RISK: Resource Availability
523
+ - **Risk**: Specialized physics expertise availability
524
+ - **Mitigation**: Early expert engagement and knowledge transfer documentation
525
+ - **Timeline Impact**: +10% contingency across all phases
526
+ - **Success Criteria**: Expert review completed on schedule
527
+
528
+ ### Scientific Risks
529
+
530
+ #### CRITICAL RISK: Scientific Accuracy
531
+ - **Risk**: Validation implementation errors could introduce physics mistakes
532
+ - **Mitigation**: Multi-level expert review and literature validation
533
+ - **Timeline Impact**: +25% time for expert review in all phases
534
+ - **Success Criteria**: 100% expert validation for all physics changes
535
+
536
+ #### HIGH RISK: Numerical Precision
537
+ - **Risk**: Validation overhead affects calculation precision
538
+ - **Mitigation**: Precision-preserving validation algorithms
539
+ - **Timeline Impact**: +15% development time for precision validation
540
+ - **Success Criteria**: Numerical precision maintained within 1e-12 relative error
541
+
542
+ ## Resource Allocation & Staffing
543
+
544
+ ### Core Team Requirements
545
+
546
+ #### Phase 1: Critical Vulnerabilities (2 weeks, 80 hours total)
547
+ - **Lead Developer**: 40 hours (physics implementation)
548
+ - **Physics Expert**: 24 hours (validation and review)
549
+ - **Test Engineer**: 16 hours (numerical stability tests)
550
+
551
+ #### Phase 2: Documentation & Safety (4 weeks, 130 hours total)
552
+ - **Technical Writer**: 60 hours (user documentation)
553
+ - **Physics Expert**: 40 hours (scientific content review)
554
+ - **Developer**: 30 hours (API documentation enhancement)
555
+
556
+ #### Phase 3: Architecture & Performance (3 weeks, 105 hours total)
557
+ - **Senior Developer**: 50 hours (optimization implementation)
558
+ - **Performance Engineer**: 30 hours (benchmarking and analysis)
559
+ - **QA Engineer**: 25 hours (integration testing)
560
+
561
+ #### Phase 4: Quality Assurance (3 weeks, 90 hours total)
562
+ - **DevOps Engineer**: 35 hours (CI/CD integration)
563
+ - **Quality Specialist**: 30 hours (quality framework)
564
+ - **Documentation Specialist**: 25 hours (final review)
565
+
566
+ #### Phase 5: Community Integration (4 weeks, 80 hours total - OPTIONAL)
567
+ - **Educational Developer**: 40 hours (materials development)
568
+ - **Community Manager**: 25 hours (partnerships)
569
+ - **Project Leadership**: 15 hours (standards development)
570
+
571
+ ### External Resources
572
+
573
+ #### Scientific Advisory Board
574
+ - **Plasma Physics Expert**: Review and validation (40 hours across all phases)
575
+ - **Numerical Methods Specialist**: Algorithm validation (20 hours in Phases 1,3)
576
+ - **Scientific Software Expert**: Quality standards validation (15 hours in Phase 4)
577
+
578
+ ## Success Measurement & Validation
579
+
580
+ ### Quantitative Success Metrics
581
+
582
+ #### Test Coverage Improvement
583
+ - **Current**: 77.1% overall coverage
584
+ - **Target**: 95%+ overall, 90%+ numerical stability coverage
585
+ - **Measurement**: Automated coverage reporting in CI/CD
586
+ - **Timeline**: Achievement by end of Phase 3
587
+
588
+ #### Performance Metrics
589
+ - **MultiIndex Operations**: 15-25% performance improvement
590
+ - **Memory Usage**: Optimization for large datasets
591
+ - **Validation Overhead**: <5% impact on physics calculations
592
+ - **Measurement**: Automated performance regression testing
593
+
594
+ #### Documentation Quality
595
+ - **Physics Guidance**: 0% → 85% coverage
596
+ - **User Safety**: 25% → 90% coverage
597
+ - **Developer Framework**: 35% → 90% coverage
598
+ - **Measurement**: Documentation coverage analysis and expert review
599
+
600
+ ### Qualitative Success Indicators
601
+
602
+ #### Scientific Community Acceptance
603
+ - **User Feedback**: Positive response to enhanced documentation
604
+ - **Publication Usage**: Adoption in peer-reviewed research
605
+ - **Educational Integration**: Use in academic plasma physics courses
606
+ - **Community Engagement**: Active contribution from scientific community
607
+
608
+ #### Long-term Sustainability
609
+ - **Code Quality**: Maintainable, well-documented codebase
610
+ - **Expert Network**: Established scientific advisory relationships
611
+ - **Standards Leadership**: Recognition as quality exemplar
612
+ - **Educational Value**: Integration in plasma physics education
613
+
614
+ ## Implementation Timeline Summary
615
+
616
+ | Phase | Weeks | Hours | Priority | Key Deliverables |
617
+ |-------|-------|-------|----------|------------------|
618
+ | **1: Critical Vulnerabilities** | 1-2 | 80 | CRITICAL | Zero density protection, 34 stability tests |
619
+ | **2: Documentation & Safety** | 3-6 | 130 | HIGH | Physics guides, user safety framework |
620
+ | **3: Architecture & Performance** | 7-9 | 105 | MEDIUM | MultiIndex optimization, 15-25% improvement |
621
+ | **4: Quality Assurance** | 10-12 | 90 | MEDIUM | Automated validation, expert review |
622
+ | **5: Community Integration** | 13-16 | 80 | OPTIONAL | Educational partnerships, standards |
623
+ | **TOTAL CORE IMPLEMENTATION** | **12 weeks** | **405 hours** | | **Complete transformation** |
624
+ | **TOTAL WITH COMMUNITY** | **16 weeks** | **485 hours** | | **Full ecosystem development** |
625
+
626
+ ## Next Steps & Implementation Initiation
627
+
628
+ ### Immediate Actions (Next 7 Days)
629
+ 1. **Stakeholder Approval**: Review and approval of implementation roadmap
630
+ 2. **Resource Allocation**: Confirm team assignments and availability
631
+ 3. **Environment Setup**: Development and testing environment preparation
632
+ 4. **Expert Engagement**: Scientific advisory board confirmation
633
+
634
+ ### Week 1 Kickoff Requirements
635
+ 1. **Team Assembly**: Core development team and physics expert availability
636
+ 2. **Tooling Setup**: Development environment, testing frameworks, CI/CD preparation
637
+ 3. **Baseline Establishment**: Current performance and coverage baselines
638
+ 4. **Communication Framework**: Progress reporting and stakeholder updates
639
+
640
+ This roadmap provides a comprehensive, actionable plan for transforming SolarWindPy into a robust scientific software platform with industry-leading quality assurance, numerical stability, and physics validation standards.
641
+
642
+ ---
643
+
644
+ **Implementation Readiness**: Complete specifications and timeline established
645
+ **Resource Requirements**: Clearly defined team and expert requirements
646
+ **Success Framework**: Quantitative and qualitative metrics for validation
647
+ **Risk Management**: Comprehensive mitigation strategies for all identified risks