solarwindpy 0.0.1.dev0__py3-none-any.whl → 0.1.0__py3-none-any.whl

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  1. plans/.velocity/metrics.json +96 -0
  2. plans/0-overview-template.md +268 -0
  3. plans/N-phase-template.md +106 -0
  4. plans/PLAN_AUDIT_SUMMARY.md +173 -0
  5. plans/TEMPLATE-USAGE-GUIDE.md +198 -0
  6. plans/__init__.py +1 -0
  7. plans/abandoned/compaction-agent-system/0-Overview.md +123 -0
  8. plans/abandoned/compaction-agent-system/agents-index-update-plan.md +109 -0
  9. plans/abandoned/compaction-agent-system/compacted_state.md +85 -0
  10. plans/abandoned/compaction-agent-system/implementation-plan.md +107 -0
  11. plans/abandoned/compaction-agent-system/system-validation-report.md +159 -0
  12. plans/abandoned/compaction-agent-system/usage-guide.md +210 -0
  13. plans/abandoned/hook-system-enhancement/0-Overview.md +214 -0
  14. plans/abandoned/hook-system-enhancement/1-Phase1-Core-Infrastructure.md +313 -0
  15. plans/abandoned/hook-system-enhancement/2-Phase2-Intelligent-Testing.md +385 -0
  16. plans/abandoned/hook-system-enhancement/3-Phase3-Physics-Validation.md +444 -0
  17. plans/abandoned/hook-system-enhancement/4-Phase4-Performance-Monitoring.md +458 -0
  18. plans/abandoned/hook-system-enhancement/5-Phase5-Developer-Experience.md +532 -0
  19. plans/abandoned/hook-system-enhancement/6-Implementation-Timeline.md +274 -0
  20. plans/abandoned/hook-system-enhancement/7-Risk-Management.md +376 -0
  21. plans/abandoned/hook-system-enhancement/8-Testing-Strategy.md +579 -0
  22. plans/abandoned/readthedocs-automation/0-Overview.md +247 -0
  23. plans/abandoned/readthedocs-automation/1-Emergency-Documentation-Fixes.md +270 -0
  24. plans/abandoned/readthedocs-automation/2-Template-System-Enhancement.md +811 -0
  25. plans/abandoned/readthedocs-automation/3-Quality-Audit-ReadTheDocs-Integration.md +844 -0
  26. plans/abandoned/readthedocs-automation/4-Plan-Consolidation-Cleanup.md +632 -0
  27. plans/abandoned/readthedocs-automation/9-Closeout.md +207 -0
  28. plans/abandoned/readthedocs-automation/ABANDONMENT_REASON.md +72 -0
  29. plans/cicd-architecture-redesign/0-Overview.md +193 -0
  30. plans/cicd-architecture-redesign/1-Workflow-Creation.md +103 -0
  31. plans/cicd-architecture-redesign/2-Version-Detection.md +123 -0
  32. plans/cicd-architecture-redesign/3-Deployment-Gates.md +169 -0
  33. plans/cicd-architecture-redesign/4-RC-Testing.md +194 -0
  34. plans/cicd-architecture-redesign/5-TestPyPI-Validation.md +264 -0
  35. plans/cicd-architecture-redesign/6-Production-Release.md +263 -0
  36. plans/cicd-architecture-redesign/7-Cleanup.md +243 -0
  37. plans/cicd-architecture-redesign/8-Documentation.md +285 -0
  38. plans/cicd-architecture-redesign/Closeout.md +225 -0
  39. plans/closeout-template.md +259 -0
  40. plans/completed/circular-import-audit/0-Overview.md +152 -0
  41. plans/completed/circular-import-audit/1-Static-Dependency-Analysis.md +62 -0
  42. plans/completed/circular-import-audit/2-Dynamic-Import-Testing.md +56 -0
  43. plans/completed/circular-import-audit/3-Performance-Impact-Assessment.md +56 -0
  44. plans/completed/circular-import-audit/4-Issue-Remediation.md +78 -0
  45. plans/completed/circular-import-audit/5-Preventive-Infrastructure.md +89 -0
  46. plans/completed/claude-settings-ecosystem-alignment/0-Overview.md +162 -0
  47. plans/completed/claude-settings-ecosystem-alignment/1-Security-Foundation.md +148 -0
  48. plans/completed/claude-settings-ecosystem-alignment/2-Hook-Integration.md +158 -0
  49. plans/completed/claude-settings-ecosystem-alignment/3-Agent-System-Integration.md +177 -0
  50. plans/completed/claude-settings-ecosystem-alignment/4-Enhanced-Workflow-Automation.md +159 -0
  51. plans/completed/claude-settings-ecosystem-alignment/5-Validation-Monitoring.md +181 -0
  52. plans/completed/claude-settings-ecosystem-alignment/compacted_session_state.md +290 -0
  53. plans/completed/combined_plan_with_checklist_documentation/1-Overview-and-Goals.md +51 -0
  54. plans/completed/combined_plan_with_checklist_documentation/2-Toolchain-and-Hosting.md +69 -0
  55. plans/completed/combined_plan_with_checklist_documentation/3-Repository-Structure.md +61 -0
  56. plans/completed/combined_plan_with_checklist_documentation/4-Configuration-and-Standards.md +70 -0
  57. plans/completed/combined_plan_with_checklist_documentation/5-Documentation-Content.md +62 -0
  58. plans/completed/combined_plan_with_checklist_documentation/6-CI-CD-and-Validation.md +58 -0
  59. plans/completed/combined_plan_with_checklist_documentation/7-Maintenance.md +55 -0
  60. plans/completed/combined_test_plan_with_checklist_fitfunctions/0-Overview.md +135 -0
  61. plans/completed/combined_test_plan_with_checklist_fitfunctions/1-Common-fixtures.md +59 -0
  62. plans/completed/combined_test_plan_with_checklist_fitfunctions/10-power_laws.md +56 -0
  63. plans/completed/combined_test_plan_with_checklist_fitfunctions/2-core.py-FitFunction.md +118 -0
  64. plans/completed/combined_test_plan_with_checklist_fitfunctions/3-gaussians.py-Gaussian-GaussianNormalized-GaussianLn.md +69 -0
  65. plans/completed/combined_test_plan_with_checklist_fitfunctions/4-trend_fits.py-TrendFit.md +99 -0
  66. plans/completed/combined_test_plan_with_checklist_fitfunctions/5-plots.py-FFPlot.md +98 -0
  67. plans/completed/combined_test_plan_with_checklist_fitfunctions/6-tex_info.py-TeXinfo.md +79 -0
  68. plans/completed/combined_test_plan_with_checklist_fitfunctions/7-Justification.md +49 -0
  69. plans/completed/combined_test_plan_with_checklist_fitfunctions/8-exponentials.md +64 -0
  70. plans/completed/combined_test_plan_with_checklist_fitfunctions/9-lines.md +58 -0
  71. plans/completed/combined_test_plan_with_checklist_plotting/0-Overview.md +142 -0
  72. plans/completed/combined_test_plan_with_checklist_plotting/1-base.py.md +90 -0
  73. plans/completed/combined_test_plan_with_checklist_plotting/10-labels-special.py.md +102 -0
  74. plans/completed/combined_test_plan_with_checklist_plotting/11-labels-chemistry.py.md +212 -0
  75. plans/completed/combined_test_plan_with_checklist_plotting/12-labels-composition.py.md +242 -0
  76. plans/completed/combined_test_plan_with_checklist_plotting/13-labels-datetime.py.md +247 -0
  77. plans/completed/combined_test_plan_with_checklist_plotting/14-labels-elemental_abundance.py.md +274 -0
  78. plans/completed/combined_test_plan_with_checklist_plotting/15-visual-validation.md +256 -0
  79. plans/completed/combined_test_plan_with_checklist_plotting/16-integration-testing.md +266 -0
  80. plans/completed/combined_test_plan_with_checklist_plotting/17-performance-benchmarks.md +267 -0
  81. plans/completed/combined_test_plan_with_checklist_plotting/18-Fixtures-and-Utilities.md +86 -0
  82. plans/completed/combined_test_plan_with_checklist_plotting/2-agg_plot.py.md +90 -0
  83. plans/completed/combined_test_plan_with_checklist_plotting/3-histograms.py.md +201 -0
  84. plans/completed/combined_test_plan_with_checklist_plotting/4-scatter.py.md +167 -0
  85. plans/completed/combined_test_plan_with_checklist_plotting/5-spiral.py.md +216 -0
  86. plans/completed/combined_test_plan_with_checklist_plotting/6-orbits.py.md +108 -0
  87. plans/completed/combined_test_plan_with_checklist_plotting/7-tools.py.md +86 -0
  88. plans/completed/combined_test_plan_with_checklist_plotting/8-select_data_from_figure.py.md +97 -0
  89. plans/completed/combined_test_plan_with_checklist_plotting/9-labels-base.py.md +88 -0
  90. plans/completed/combined_test_plan_with_checklist_solar_activity/.gitkeep +0 -0
  91. plans/completed/combined_test_plan_with_checklist_solar_activity/0-Overview.md +170 -0
  92. plans/completed/combined_test_plan_with_checklist_solar_activity/1-Package-Entry-Point-__init__.py.md +121 -0
  93. plans/completed/combined_test_plan_with_checklist_solar_activity/2-Core-Base-Classes-base.py.md +142 -0
  94. plans/completed/combined_test_plan_with_checklist_solar_activity/3-Plotting-Helpers-plots.py.md +123 -0
  95. plans/completed/combined_test_plan_with_checklist_solar_activity/4-LISIRD-Sub-package.md +119 -0
  96. plans/completed/combined_test_plan_with_checklist_solar_activity/5-Extrema-Calculator.md +103 -0
  97. plans/completed/combined_test_plan_with_checklist_solar_activity/6-Sunspot-Number-Sub-package.md +163 -0
  98. plans/completed/combined_test_plan_with_checklist_solar_activity/7-Sunspot-Number-Init.py.md +217 -0
  99. plans/completed/combined_test_plan_with_checklist_solar_activity/compacted_state.md +52 -0
  100. plans/completed/compaction-agent-modernization/0-Overview.md +156 -0
  101. plans/completed/compaction-agent-modernization/1-Architecture-Audit-Gap-Analysis.md +132 -0
  102. plans/completed/compaction-agent-modernization/2-Token-Baseline-Recalibration.md +153 -0
  103. plans/completed/compaction-agent-modernization/3-Agent-Reference-Updates.md +184 -0
  104. plans/completed/compaction-agent-modernization/4-Compression-Algorithm-Modernization.md +238 -0
  105. plans/completed/compaction-agent-modernization/5-Workflow-Integration-Streamlining.md +252 -0
  106. plans/completed/compaction-agent-modernization/6-Template-Structure-Optimization.md +240 -0
  107. plans/completed/compaction-agent-modernization/7-Integration-Testing-Validation.md +292 -0
  108. plans/completed/compaction-hook-enhancement/0-Overview.md +150 -0
  109. plans/completed/compaction-hook-enhancement/1-Token-Estimation-Enhancement.md +179 -0
  110. plans/completed/compaction-hook-enhancement/2-Compression-Intelligence.md +294 -0
  111. plans/completed/compaction-hook-enhancement/3-Git-Integration-Metadata.md +310 -0
  112. plans/completed/compaction-hook-enhancement/4-Session-Continuity-Features.md +358 -0
  113. plans/completed/compaction-hook-enhancement/5-Testing-Strategy.md +404 -0
  114. plans/completed/compaction-hook-enhancement/6-Integration-Roadmap.md +319 -0
  115. plans/completed/compaction-hook-enhancement/compacted_state.md +142 -0
  116. plans/completed/docstring-audit-enhancement/0-Overview.md +274 -0
  117. plans/completed/docstring-audit-enhancement/1-Infrastructure-Setup-and-Validation-Tools.md +206 -0
  118. plans/completed/docstring-audit-enhancement/2-Core-Physics-Modules-Enhancement.md +237 -0
  119. plans/completed/docstring-audit-enhancement/3-Fitfunctions-Mathematical-Modules-Enhancement.md +188 -0
  120. plans/completed/docstring-audit-enhancement/4-Plotting-Visualization-Modules-Enhancement.md +243 -0
  121. plans/completed/docstring-audit-enhancement/5-Specialized-Modules-Enhancement.md +216 -0
  122. plans/completed/docstring-audit-enhancement/6-Validation-and-Integration.md +216 -0
  123. plans/completed/fitfunctions-testing-implementation/0-Overview.md +130 -0
  124. plans/completed/fitfunctions-testing-implementation/1-Test-Infrastructure-Setup.md +79 -0
  125. plans/completed/fitfunctions-testing-implementation/2-Common-Fixtures-Test-Utilities.md +104 -0
  126. plans/completed/fitfunctions-testing-implementation/3-Core-FitFunction-Testing.md +168 -0
  127. plans/completed/fitfunctions-testing-implementation/4-Specialized-Function-Classes.md +210 -0
  128. plans/completed/fitfunctions-testing-implementation/5-Advanced-Classes-Testing.md +214 -0
  129. plans/completed/fitfunctions-testing-implementation/6-Plotting-Integration-Testing.md +231 -0
  130. plans/completed/fitfunctions-testing-implementation/7-Extended-Coverage-BONUS.md +184 -0
  131. plans/completed/numpy-docstring-conversion-plan/numpy-docstring-conversion-plan.md +118 -0
  132. plans/completed/pr-review-remediation/0-Overview.md +138 -0
  133. plans/completed/pr-review-remediation/1-Critical-Safety-Improvements.md +179 -0
  134. plans/completed/pr-review-remediation/2-Smart-Timeouts-Validation.md +399 -0
  135. plans/completed/pr-review-remediation/3-Enhanced-GitHub-Integration.md +258 -0
  136. plans/completed/pr-review-remediation/compacted_state.md +66 -0
  137. plans/completed/python-310-migration/0-Overview.md +390 -0
  138. plans/completed/python-310-migration/1-Planning-Setup.md +164 -0
  139. plans/completed/python-310-migration/2-Implementation.md +256 -0
  140. plans/completed/python-310-migration/3-Testing-Validation.md +335 -0
  141. plans/completed/python-310-migration/4-Documentation-Release.md +274 -0
  142. plans/completed/python-310-migration/5-Closeout.md +252 -0
  143. plans/completed/requirements-management-consolidation/0-Overview.md +118 -0
  144. plans/completed/requirements-management-consolidation/1-Documentation-Validation-Environment-Setup.md +116 -0
  145. plans/completed/requirements-management-consolidation/2-Requirements-Consolidation.md +161 -0
  146. plans/completed/requirements-management-consolidation/3-Workflow-Automation-Final-Integration.md +196 -0
  147. plans/completed/single-ecosystem-plan-implementation/0-Overview.md +83 -0
  148. plans/completed/single-ecosystem-plan-implementation/1-Plan-Preservation-Session-Management.md +38 -0
  149. plans/completed/single-ecosystem-plan-implementation/2-File-Structure-Optimization.md +43 -0
  150. plans/completed/single-ecosystem-plan-implementation/3-Plan-Migration-Archive-Setup.md +82 -0
  151. plans/completed/single-ecosystem-plan-implementation/4-Agent-System-Transformation.md +108 -0
  152. plans/completed/single-ecosystem-plan-implementation/5-Template-System-Enhancement.md +131 -0
  153. plans/completed/single-ecosystem-plan-implementation/6-Final-Validation-Testing.md +120 -0
  154. plans/completed/test-directory-consolidation/0-Overview.md +51 -0
  155. plans/completed/test-directory-consolidation/1-Structure-Preparation.md +82 -0
  156. plans/completed/test-directory-consolidation/2-File-Migration.md +100 -0
  157. plans/completed/test-directory-consolidation/3-Import-Transformation.md +117 -0
  158. plans/completed/test-directory-consolidation/4-Configuration-Consolidation.md +140 -0
  159. plans/completed/test-directory-consolidation/5-Validation.md +152 -0
  160. plans/completed/test-directory-consolidation/6-Cleanup.md +156 -0
  161. plans/completed/test-planning-agents-architecture/0-Overview.md +79 -0
  162. plans/completed/test-planning-agents-architecture/1-Branch-Isolation-Testing.md +49 -0
  163. plans/completed/test-planning-agents-architecture/2-Cross-Branch-Coordination.md +51 -0
  164. plans/completed/test-planning-agents-architecture/3-Merge-Workflow-Testing.md +48 -0
  165. plans/deployment-semver-pypi-rtd/0-Overview.md +463 -0
  166. plans/deployment-semver-pypi-rtd/1-Semantic-Versioning-Foundation.md +136 -0
  167. plans/deployment-semver-pypi-rtd/2-PyPI-Deployment-Infrastructure.md +168 -0
  168. plans/deployment-semver-pypi-rtd/3-Release-Automation.md +214 -0
  169. plans/deployment-semver-pypi-rtd/4-Plan-Closeout.md +543 -0
  170. plans/deployment-semver-pypi-rtd/compacted_session_state.md +172 -0
  171. plans/deployment-semver-pypi-rtd/compacted_state.md +131 -0
  172. plans/documentation-code-audit/0-Overview.md +393 -0
  173. plans/documentation-code-audit/1-Discovery-Inventory.md +183 -0
  174. plans/documentation-code-audit/2-Execution-Environment-Setup.md +263 -0
  175. plans/documentation-code-audit/3-Systematic-Validation.md +322 -0
  176. plans/documentation-code-audit/4-Code-Example-Remediation.md +358 -0
  177. plans/documentation-code-audit/5-Physics-MultiIndex-Compliance.md +464 -0
  178. plans/documentation-code-audit/6-Doctest-Integration.md +523 -0
  179. plans/documentation-code-audit/7-Reporting-Documentation.md +498 -0
  180. plans/documentation-code-audit/8-Closeout.md +456 -0
  181. plans/documentation-rebuild-session/compacted_state.md +109 -0
  182. plans/documentation-rendering-fixes/0-Overview.md +104 -0
  183. plans/documentation-rendering-fixes/1-Sphinx-Build-Diagnostics-Warning-Audit.md +101 -0
  184. plans/documentation-rendering-fixes/2-Configuration-Infrastructure-Fixes.md +113 -0
  185. plans/documentation-rendering-fixes/3-Docstring-Syntax-Audit-Repair.md +131 -0
  186. plans/documentation-rendering-fixes/4-HTML-Page-Rendering-Verification.md +113 -0
  187. plans/documentation-rendering-fixes/5-Advanced-Documentation-Quality-Assurance.md +119 -0
  188. plans/documentation-rendering-fixes/6-Documentation-Build-Optimization-Testing.md +129 -0
  189. plans/documentation-rendering-fixes/compacted_state.md +132 -0
  190. plans/documentation-template-fix/0-Overview.md +197 -0
  191. plans/documentation-template-fix/1-Template-System-Analysis.md +269 -0
  192. plans/documentation-template-fix/2-Template-Modification.md +609 -0
  193. plans/documentation-template-fix/3-Build-System-Integration.md +766 -0
  194. plans/documentation-template-fix/4-Testing-Validation.md +1399 -0
  195. plans/documentation-template-fix/5-Documentation-Training.md +602 -0
  196. plans/documentation-workflow-fix/0-Overview.md +222 -0
  197. plans/documentation-workflow-fix/1-Immediate-Fixes.md +238 -0
  198. plans/documentation-workflow-fix/2-Configuration-Setup.md +298 -0
  199. plans/documentation-workflow-fix/3-Pre-commit-Integration.md +382 -0
  200. plans/documentation-workflow-fix/4-Workflow-Improvements.md +446 -0
  201. plans/documentation-workflow-fix/5-Documentation-and-Training.md +527 -0
  202. plans/duplicate-object-warnings-fix-plan.md +130 -0
  203. plans/github-issues-migration/0-Overview.md +510 -0
  204. plans/github-issues-migration/1-Foundation-Label-System.md +180 -0
  205. plans/github-issues-migration/2-Migration-Tool-Rewrite.md +235 -0
  206. plans/github-issues-migration/3-CLI-Integration-Automation.md +169 -0
  207. plans/github-issues-migration/4-Validated-Migration.md +252 -0
  208. plans/github-issues-migration/5-Documentation-Training.md +171 -0
  209. plans/github-issues-migration/6-Closeout.md +179 -0
  210. plans/github-workflows-repair/repair-plan.md +299 -0
  211. plans/issues_from_plans.py +342 -0
  212. plans/pr-270-doc-validation-fixes/0-Overview.md +354 -0
  213. plans/pr-270-doc-validation-fixes/1-Critical-PR-Fixes.md +117 -0
  214. plans/pr-270-doc-validation-fixes/2-Framework-Right-Sizing.md +129 -0
  215. plans/pr-270-doc-validation-fixes/3-Sustainable-Documentation.md +126 -0
  216. plans/pr-270-doc-validation-fixes/4-Closeout-Migration.md +143 -0
  217. plans/pr-270-doc-validation-fixes/PLAN_COMPLETED.md +149 -0
  218. plans/python-310-migration/0-Overview.md +390 -0
  219. plans/python-310-migration/1-Planning-Setup.md +164 -0
  220. plans/python-310-migration/2-Implementation.md +256 -0
  221. plans/python-310-migration/3-Testing-Validation.md +335 -0
  222. plans/python-310-migration/4-Documentation-Release.md +274 -0
  223. plans/python-310-migration/5-Closeout.md +252 -0
  224. plans/readthedocs-simplified/0-Overview.md +243 -0
  225. plans/readthedocs-simplified/1-Immediate-Fixes.md +216 -0
  226. plans/readthedocs-simplified/2-Template-Simplification.md +278 -0
  227. plans/readthedocs-simplified/3-ReadTheDocs-Setup.md +298 -0
  228. plans/readthedocs-simplified/4-Testing-Validation.md +328 -0
  229. plans/readthedocs-simplified/5-Closeout.md +231 -0
  230. plans/readthedocs-simplified/compacted_state.md +127 -0
  231. plans/session-compaction-2025-08-12/compacted_state.md +114 -0
  232. plans/session-compaction-2025-08-13/compacted_state.md +145 -0
  233. plans/session-continuity-protocol/0-Overview.md +35 -0
  234. plans/session-continuity-protocol/1-Core-Principles-Framework.md +40 -0
  235. plans/session-continuity-protocol/2-Pre-Session-Validation-System.md +79 -0
  236. plans/session-continuity-protocol/3-Context-Switching-Prevention.md +87 -0
  237. plans/session-continuity-protocol/4-Progress-Tracking-Recovery.md +100 -0
  238. plans/sphinx-warnings-analysis.md +222 -0
  239. plans/systemprompt-optimization/0-Overview.md +447 -0
  240. plans/systemprompt-optimization/1-Deploy-SystemPrompt.md +114 -0
  241. plans/systemprompt-optimization/2-Documentation-Alignment.md +198 -0
  242. plans/systemprompt-optimization/3-Monitoring-Infrastructure.md +396 -0
  243. plans/systemprompt-optimization/4-Implementation-Script.md +450 -0
  244. plans/systemprompt-optimization/9-Closeout.md +165 -0
  245. plans/systemprompt-optimization/compacted_state.md +143 -0
  246. plans/template-value-propositions/0-Overview.md +357 -0
  247. plans/template-value-propositions/1-Value-Proposition-Framework-Design.md +144 -0
  248. plans/template-value-propositions/2-Plan-Template-Enhancement.md +178 -0
  249. plans/template-value-propositions/3-Value-Generator-Hook-Implementation.md +291 -0
  250. plans/template-value-propositions/4-Value-Validator-Hook-Implementation.md +274 -0
  251. plans/template-value-propositions/5-Documentation-Agent-Updates.md +219 -0
  252. plans/template-value-propositions/6-Integration-Testing-Validation.md +247 -0
  253. plans/tests-audit/0-Overview.md +410 -0
  254. plans/tests-audit/1-Discovery-Inventory.md +170 -0
  255. plans/tests-audit/2-Physics-Validation-Audit.md +195 -0
  256. plans/tests-audit/3-Architecture-Compliance.md +195 -0
  257. plans/tests-audit/4-Numerical-Stability-Analysis.md +203 -0
  258. plans/tests-audit/5-Documentation-Enhancement.md +220 -0
  259. plans/tests-audit/6-Audit-Deliverables.md +220 -0
  260. plans/tests-audit/7-Closeout.md +252 -0
  261. plans/tests-audit/artifacts/ARCHITECTURE_COMPLIANCE_REPORT.md +315 -0
  262. plans/tests-audit/artifacts/ARCHITECTURE_RECOMMENDATIONS.md +943 -0
  263. plans/tests-audit/artifacts/COMPREHENSIVE_AUDIT_REPORT.md +356 -0
  264. plans/tests-audit/artifacts/CONTRIBUTING_ENHANCED_TEMPLATE.md +419 -0
  265. plans/tests-audit/artifacts/COVERAGE_GAP_ANALYSIS.md +152 -0
  266. plans/tests-audit/artifacts/DOCUMENTATION_ENHANCEMENT_REPORT.md +502 -0
  267. plans/tests-audit/artifacts/EXECUTIVE_AUDIT_SUMMARY.md +129 -0
  268. plans/tests-audit/artifacts/IMPLEMENTATION_ROADMAP.md +647 -0
  269. plans/tests-audit/artifacts/NUMERICAL_RECOMMENDATIONS.md +739 -0
  270. plans/tests-audit/artifacts/NUMERICAL_STABILITY_GUIDE_TEMPLATE.rst +451 -0
  271. plans/tests-audit/artifacts/NUMERICAL_STABILITY_REPORT.md +301 -0
  272. plans/tests-audit/artifacts/PHASE_3_SUMMARY.md +280 -0
  273. plans/tests-audit/artifacts/PHASE_4_SUMMARY.md +229 -0
  274. plans/tests-audit/artifacts/PHASE_5_SUMMARY.md +292 -0
  275. plans/tests-audit/artifacts/PHASE_6_CLOSEOUT.md +278 -0
  276. plans/tests-audit/artifacts/PHYSICS_GUIDE_TEMPLATE.rst +268 -0
  277. plans/tests-audit/artifacts/PHYSICS_VALIDATION_REPORT.md +235 -0
  278. plans/tests-audit/artifacts/TECHNICAL_DELIVERABLES_PACKAGE.md +2502 -0
  279. plans/tests-audit/artifacts/TEST_INVENTORY.csv +1204 -0
  280. plans/tests-audit/artifacts/TEST_INVENTORY.md +135 -0
  281. plans/tests-audit/artifacts/test_discovery_analysis.py +231 -0
  282. plans/tests-audit/artifacts/test_parser.py +395 -0
  283. solarwindpy/README.md +3 -0
  284. solarwindpy/Untitled.ipynb +54 -0
  285. solarwindpy/__init__.py +74 -0
  286. solarwindpy/core/__init__.py +23 -0
  287. solarwindpy/core/alfvenic_turbulence.py +804 -0
  288. solarwindpy/core/base.py +267 -0
  289. solarwindpy/core/ions.py +309 -0
  290. solarwindpy/core/plasma.py +2133 -0
  291. solarwindpy/core/spacecraft.py +256 -0
  292. solarwindpy/core/tensor.py +90 -0
  293. solarwindpy/core/units_constants.py +199 -0
  294. solarwindpy/core/vector.py +328 -0
  295. solarwindpy/fitfunctions/__init__.py +20 -0
  296. solarwindpy/fitfunctions/core.py +734 -0
  297. solarwindpy/fitfunctions/exponentials.py +188 -0
  298. solarwindpy/fitfunctions/gaussians.py +264 -0
  299. solarwindpy/fitfunctions/lines.py +116 -0
  300. solarwindpy/fitfunctions/moyal.py +71 -0
  301. solarwindpy/fitfunctions/plots.py +751 -0
  302. solarwindpy/fitfunctions/power_laws.py +209 -0
  303. solarwindpy/fitfunctions/tex_info.py +568 -0
  304. solarwindpy/fitfunctions/trend_fits.py +482 -0
  305. solarwindpy/instabilities/__init__.py +16 -0
  306. solarwindpy/instabilities/beta_ani.py +82 -0
  307. solarwindpy/instabilities/verscharen2016.py +631 -0
  308. solarwindpy/plotting/__init__.py +33 -0
  309. solarwindpy/plotting/agg_plot.py +489 -0
  310. solarwindpy/plotting/base.py +465 -0
  311. solarwindpy/plotting/hist1d.py +405 -0
  312. solarwindpy/plotting/hist2d.py +1035 -0
  313. solarwindpy/plotting/histograms.py +1845 -0
  314. solarwindpy/plotting/labels/__init__.py +104 -0
  315. solarwindpy/plotting/labels/base.py +686 -0
  316. solarwindpy/plotting/labels/chemistry.py +19 -0
  317. solarwindpy/plotting/labels/composition.py +100 -0
  318. solarwindpy/plotting/labels/datetime.py +235 -0
  319. solarwindpy/plotting/labels/elemental_abundance.py +73 -0
  320. solarwindpy/plotting/labels/special.py +794 -0
  321. solarwindpy/plotting/orbits.py +515 -0
  322. solarwindpy/plotting/scatter.py +99 -0
  323. solarwindpy/plotting/select_data_from_figure.py +329 -0
  324. solarwindpy/plotting/spiral.py +980 -0
  325. solarwindpy/plotting/tools.py +434 -0
  326. solarwindpy/scripts/__init__.py +1 -0
  327. solarwindpy/scripts/logs/.gitignore +1 -0
  328. solarwindpy/solar_activity/__init__.py +53 -0
  329. solarwindpy/solar_activity/base.py +605 -0
  330. solarwindpy/solar_activity/lisird/__init__.py +3 -0
  331. solarwindpy/solar_activity/lisird/extrema_calculator.py +394 -0
  332. solarwindpy/solar_activity/lisird/lisird.py +319 -0
  333. solarwindpy/solar_activity/plots.py +116 -0
  334. solarwindpy/solar_activity/sunspot_number/.DS_Store +0 -0
  335. solarwindpy/solar_activity/sunspot_number/__init__.py +3 -0
  336. solarwindpy/solar_activity/sunspot_number/sidc.py +556 -0
  337. solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv +72 -0
  338. solarwindpy/solar_activity/sunspot_number/ssn_extrema.csv.silso +72 -0
  339. solarwindpy/tools/__init__.py +162 -0
  340. solarwindpy-0.1.0.dist-info/METADATA +181 -0
  341. solarwindpy-0.1.0.dist-info/RECORD +409 -0
  342. {solarwindpy-0.0.1.dev0.dist-info → solarwindpy-0.1.0.dist-info}/WHEEL +1 -1
  343. solarwindpy-0.1.0.dist-info/licenses/LICENSE.rst +32 -0
  344. solarwindpy-0.1.0.dist-info/top_level.txt +3 -0
  345. tests/__init__.py +1 -0
  346. tests/conftest.py +10 -0
  347. tests/core/__init__.py +1 -0
  348. tests/core/test_alfvenic_turbulence.py +544 -0
  349. tests/core/test_base.py +112 -0
  350. tests/core/test_base_head_tail.py +29 -0
  351. tests/core/test_base_mi_tuples.py +11 -0
  352. tests/core/test_core_verify_datetimeindex.py +32 -0
  353. tests/core/test_ions.py +325 -0
  354. tests/core/test_plasma.py +2581 -0
  355. tests/core/test_plasma_io.py +12 -0
  356. tests/core/test_quantities.py +507 -0
  357. tests/core/test_spacecraft.py +210 -0
  358. tests/core/test_units_constants.py +22 -0
  359. tests/data/epoch.csv +4 -0
  360. tests/data/plasma.csv +4 -0
  361. tests/data/spacecraft.csv +4 -0
  362. tests/fitfunctions/conftest.py +60 -0
  363. tests/fitfunctions/test_core.py +193 -0
  364. tests/fitfunctions/test_exponentials.py +342 -0
  365. tests/fitfunctions/test_gaussians.py +142 -0
  366. tests/fitfunctions/test_lines.py +349 -0
  367. tests/fitfunctions/test_moyal.py +258 -0
  368. tests/fitfunctions/test_plots.py +258 -0
  369. tests/fitfunctions/test_power_laws.py +365 -0
  370. tests/fitfunctions/test_tex_info.py +183 -0
  371. tests/fitfunctions/test_trend_fit_properties.py +31 -0
  372. tests/fitfunctions/test_trend_fits.py +244 -0
  373. tests/plotting/__init__.py +1 -0
  374. tests/plotting/labels/__init__.py +1 -0
  375. tests/plotting/labels/test_chemistry.py +243 -0
  376. tests/plotting/labels/test_composition.py +345 -0
  377. tests/plotting/labels/test_datetime.py +445 -0
  378. tests/plotting/labels/test_elemental_abundance.py +366 -0
  379. tests/plotting/labels/test_init.py +66 -0
  380. tests/plotting/labels/test_labels_base.py +347 -0
  381. tests/plotting/labels/test_special.py +550 -0
  382. tests/plotting/test_agg_plot.py +602 -0
  383. tests/plotting/test_base.py +752 -0
  384. tests/plotting/test_fixtures_utilities.py +775 -0
  385. tests/plotting/test_histograms.py +546 -0
  386. tests/plotting/test_integration.py +675 -0
  387. tests/plotting/test_orbits.py +435 -0
  388. tests/plotting/test_performance.py +708 -0
  389. tests/plotting/test_scatter.py +752 -0
  390. tests/plotting/test_select_data_from_figure.py +1209 -0
  391. tests/plotting/test_spiral.py +573 -0
  392. tests/plotting/test_tools.py +607 -0
  393. tests/plotting/test_visual_validation.py +465 -0
  394. tests/solar_activity/__init__.py +1 -0
  395. tests/solar_activity/lisird/__init__.py +1 -0
  396. tests/solar_activity/lisird/test_extrema_calculator.py +593 -0
  397. tests/solar_activity/lisird/test_lisird_id.py +187 -0
  398. tests/solar_activity/sunspot_number/__init__.py +1 -0
  399. tests/solar_activity/sunspot_number/test_init.py +399 -0
  400. tests/solar_activity/sunspot_number/test_sidc.py +465 -0
  401. tests/solar_activity/sunspot_number/test_sidc_id.py +223 -0
  402. tests/solar_activity/sunspot_number/test_sidc_loader.py +275 -0
  403. tests/solar_activity/sunspot_number/test_ssn_extrema.py +406 -0
  404. tests/solar_activity/test_base.py +656 -0
  405. tests/solar_activity/test_init.py +396 -0
  406. tests/solar_activity/test_plots.py +371 -0
  407. tests/test_circular_imports.py +408 -0
  408. tests/test_issue_titles.py +25 -0
  409. tests/test_statusline.py +298 -0
  410. solarwindpy-0.0.1.dev0.dist-info/METADATA +0 -14
  411. solarwindpy-0.0.1.dev0.dist-info/RECORD +0 -4
  412. solarwindpy-0.0.1.dev0.dist-info/top_level.txt +0 -1
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+ # Claude Settings Ecosystem Alignment - Compacted Session State
2
+
3
+ ## Session Context Summary
4
+ **Generated**: 2025-08-16
5
+ **Plan Status**: Completed Successfully ✅
6
+ **Branch**: plan/claude-settings-ecosystem-alignment
7
+ **Implementation Branch**: feature/claude-settings-ecosystem-alignment (merged)
8
+ **Total Estimated Duration**: 6-8 hours across 5 phases
9
+ **Actual Duration**: ~1 hour
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+ **Velocity Improvement**: 8x faster than estimated
11
+ **Implementation Commit**: 9a4d395
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+
13
+ ## Plan Overview & Objective
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+ Transform SolarWindPy's .claude/settings.json into a comprehensive, secure, and intelligent development ecosystem that fully integrates:
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+ - **7 specialized hooks** with complete functionality
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+ - **8 domain-specific agents** with intelligent routing
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+ - **Multi-layered security** with granular permission controls
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+ - **Workflow automation** with context-aware suggestions
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+ - **Comprehensive monitoring** with rollback capabilities
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+
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+ **Core Problem**: Current settings have critical gaps - only 5/7 hooks integrated, no agent routing, overly restrictive permissions blocking hook execution, and missed opportunities for intelligent automation.
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+
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+ ## Current Ecosystem Assets
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+ ### 7 Specialized Hooks
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+ 1. **validate-session-state.sh** - Session continuity and branch validation
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+ 2. **git-workflow-validator.sh** - Branch protection and commit standards
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+ 3. **test-runner.sh** - Smart test execution (MISSING from settings)
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+ 4. **physics-validation.py** - Physics correctness and unit validation
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+ 5. **coverage-monitor.py** - Coverage analysis (MISSING from settings)
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+ 6. **create-compaction.py** - Session state preservation
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+ 7. **pre-commit-tests.sh** - Pre-commit quality gates
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+
33
+ ### 8 Domain-Specific Agents
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+ 1. **UnifiedPlanCoordinator** - Planning, implementation, cross-plan coordination
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+ 2. **PhysicsValidator** - Physics correctness, unit validation, scientific accuracy
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+ 3. **DataFrameArchitect** - MultiIndex operations, pandas optimization
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+ 4. **NumericalStabilityGuard** - Numerical validation, edge cases, stability
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+ 5. **PlottingEngineer** - Visualization, matplotlib, publication-quality figures
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+ 6. **FitFunctionSpecialist** - Curve fitting, statistical analysis, data modeling
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+ 7. **TestEngineer** - Test coverage, quality assurance, testing strategies
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+
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+ ### 1 Utility Script
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+ - **generate-test.py** - Test scaffolding and template generation
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+
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+ ## 5-Phase Implementation Plan
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+
47
+ ### Phase 1: Security Foundation & Permission Restructure (2.0h)
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+ **Objective**: Implement defense-in-depth security with 6 security layers
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+
50
+ **6-Layer Security Model**:
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+ 1. **Layer 1**: Granular pattern-based permissions (replace wildcards)
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+ 2. **Layer 2**: Input validation and argument sanitization
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+ 3. **Layer 3**: Execution environment restrictions and resource limits
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+ 4. **Layer 4**: Comprehensive audit logging and monitoring
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+ 5. **Layer 5**: Enhanced deny list enforcement
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+ 6. **Layer 6**: Security monitoring and alerting
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+
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+ **Key Tasks** (12 tasks total):
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+ - Analyze permission gaps and design granular patterns
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+ - Implement hook-specific bash permissions with argument validation
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+ - Add comprehensive deny patterns for sensitive files
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+ - Create execution timeout controls and resource limits
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+ - Design audit logging framework with security monitoring
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+
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+ **Critical Issues Addressed**:
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+ - Overly restrictive permissions blocking legitimate hook execution
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+ - Broad wildcard patterns creating potential security vulnerabilities
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+ - Missing input validation enabling potential injection attacks
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+ - No resource controls for hook execution
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+ - Insufficient audit trails for security events
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+
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+ ### Phase 2: Hook Integration & Configuration (1.5h)
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+ **Objective**: Integrate all 7 hooks with full argument utilization and intelligent triggering
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+
75
+ **Missing Hook Integration**:
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+ - **test-runner.sh**: Smart test execution with --changed, --physics, --coverage arguments
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+ - **coverage-monitor.py**: Comprehensive coverage monitoring and reporting
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+
79
+ **Enhanced Argument Utilization**:
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+ - **test-runner.sh**: --changed, --physics, --coverage, --module, --timeout, --parallel
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+ - **physics-validation.py**: --strict, --report, --fix, --scope
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+ - **git-workflow-validator.sh**: --enforce-branch, --check-tests, --validate-message
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+
84
+ **Key Tasks** (12 tasks total):
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+ - Integrate missing hooks with context-aware triggers
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+ - Enhance hook arguments for contextual execution
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+ - Implement intelligent triggering based on file changes
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+ - Add hook coordination logic to prevent conflicts
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+ - Configure performance limits and error handling
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+
91
+ **Intelligent Triggering Design**:
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+ - **Code Changes**: Trigger appropriate tests based on modified files
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+ - **Physics Changes**: Automatic validation for core/ and instabilities/
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+ - **Test Changes**: Smart execution for test file modifications
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+ - **Git Operations**: Workflow enforcement for branch/commit operations
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+
97
+ ### Phase 3: Agent System Integration (1.5h)
98
+ **Objective**: Integrate 8-agent system with intelligent routing and context-aware suggestions
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+
100
+ **Agent Routing Matrix**:
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+ - **File-Based**: `core/*.py` → PhysicsValidator, `plotting/*.py` → PlottingEngineer
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+ - **Keyword-Based**: "plan" → UnifiedPlanCoordinator, "plot" → PlottingEngineer
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+ - **Context-Based**: Multi-step tasks → UnifiedPlanCoordinator, Physics calculations → PhysicsValidator
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+
105
+ **Key Tasks** (12 tasks total):
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+ - Implement context-aware agent routing with domain-specific triggers
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+ - Add capability matrix defining when each agent should be suggested
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+ - Create agent handoff protocols for complex task coordination
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+ - Implement performance monitoring and fallback mechanisms
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+ - Design prioritization logic for multiple relevant agents
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+
112
+ **Agent Coordination Strategy**:
113
+ 1. UnifiedPlanCoordinator for multi-step and planning tasks
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+ 2. Domain specialists for technical implementations
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+ 3. TestEngineer for quality assurance and validation
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+ 4. Fallback to UnifiedPlanCoordinator with domain context
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+
118
+ ### Phase 4: Enhanced Workflow Automation (1.0h)
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+ **Objective**: Create intelligent automation combining hooks, agents, and context awareness
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+
121
+ **Automation Framework**:
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+ - **File Change Analysis**: Map file patterns to automation triggers
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+ - **User Intent Detection**: Parse prompts for task types and routing
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+ - **Workflow State Tracking**: Adapt to Planning → Implementation → Testing → Review cycles
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+
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+ **Key Tasks** (9 tasks total):
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+ - Implement smart context analysis and user intent detection
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+ - Add proactive automation triggers for tests and quality gates
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+ - Create adaptive learning from user patterns and preferences
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+ - Implement contextual help and workflow shortcuts
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+ - Design transparent, user-controllable automation
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+
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+ **Smart Automation Examples**:
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+ - **Test Selection**: Core changes → physics tests, new functions → coverage checks
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+ - **Quality Gates**: Pre-commit → formatting, Pre-push → full validation
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+ - **Documentation**: API changes → docstring suggestions
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+
138
+ ### Phase 5: Validation & Monitoring (1.0h)
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+ **Objective**: Establish comprehensive validation, monitoring, and rollback systems
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+
141
+ **Validation Strategy**:
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+ 1. **Component Testing**: Each component works individually
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+ 2. **Integration Testing**: All components work together
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+ 3. **Performance Testing**: System performs well under load
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+ 4. **Security Testing**: No vulnerabilities from integration
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+ 5. **User Experience Testing**: System enhances workflow
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+
148
+ **Key Tasks** (9 tasks total):
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+ - Execute end-to-end integration testing across all components
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+ - Establish performance baselines and monitoring dashboards
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+ - Create graduated rollback procedures and troubleshooting guides
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+ - Implement alerting for critical system issues
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+ - Document operational procedures and success metrics
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+
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+ **Success Metrics**:
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+ - Hook execution success rate ≥ 99%
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+ - Agent suggestion accuracy ≥ 85%
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+ - Security policy enforcement ≥ 100%
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+ - Workflow completion time improvement ≥ 15%
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+
161
+ ## Technical Architecture
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+
163
+ ### Multi-Layered Security Approach
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+ **Philosophy**: Defense-in-depth with fail-safe defaults
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+ - **Principle of Least Privilege**: Minimum necessary permissions
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+ - **Granular Patterns**: File-specific instead of wildcards
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+ - **Input Validation**: Prevent injection through arguments
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+ - **Resource Controls**: Timeouts and limits for hook execution
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+ - **Comprehensive Logging**: Audit trail for all security decisions
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+
171
+ ### Intelligent Hook Integration
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+ **Coordination Logic**:
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+ - Prevent duplicate test runs from multiple triggers
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+ - Context-aware argument selection based on file changes
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+ - Performance optimization with parallel execution where possible
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+ - Graceful degradation when hooks fail or timeout
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+
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+ ### Agent Routing Intelligence
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+ **Pattern Matching**:
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+ - Fast regex-based file and keyword pattern matching
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+ - Context preservation during agent transitions
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+ - Priority ordering with clear handoff protocols
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+ - Performance monitoring with fallback mechanisms
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+
185
+ ### Workflow Automation Framework
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+ **Core Principles**:
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+ - **Helpful, Not Intrusive**: Enhance without interrupting workflow
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+ - **Transparent**: Clear indication of automated actions and rationale
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+ - **Controllable**: User customization and override capabilities
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+ - **Learning**: Adaptation to user preferences and patterns
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+
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+ ## Implementation Readiness
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+
194
+ ### Immediate Next Steps
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+ 1. **Switch to implementation branch**: `git checkout -b feature/claude-settings-ecosystem-alignment`
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+ 2. **Begin Phase 1**: Analyze current permission gaps and security vulnerabilities
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+ 3. **Design security layers**: Create specifications for 6-layer security model
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+ 4. **Implement granular permissions**: Replace wildcards with precise patterns
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+
200
+ ### Prerequisites Validated
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+ - ✅ All 7 hooks exist and are functional in `.claude/hooks/`
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+ - ✅ All 8 agents are defined and operational
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+ - ✅ Current `.claude/settings.json` provides baseline for enhancement
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+ - ✅ No blocking dependencies on other plans or features
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+ - ✅ Testing infrastructure ready for validation
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+
207
+ ### Risk Assessment & Mitigation
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+
209
+ **High-Risk Areas**:
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+ 1. **Permission Changes**: Risk of blocking legitimate operations
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+ - *Mitigation*: Comprehensive testing with rollback procedures
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+ 2. **Performance Impact**: Complex pattern matching and context analysis
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+ - *Mitigation*: Performance baselines and optimization monitoring
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+ 3. **Security Vulnerabilities**: New attack surfaces from expanded capabilities
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+ - *Mitigation*: Multi-layered security with penetration testing
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+
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+ **Medium-Risk Areas**:
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+ 1. **Agent Routing Conflicts**: Multiple agents suggested for same task
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+ - *Mitigation*: Clear prioritization logic and user control
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+ 2. **Hook Coordination**: Timing conflicts and resource contention
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+ - *Mitigation*: Coordination logic and resource management
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+
223
+ ### Value Propositions
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+
225
+ **Immediate Benefits**:
226
+ - **Unblocked Development**: Hooks can execute without permission errors
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+ - **Intelligent Assistance**: Context-aware agent suggestions
228
+ - **Automated Quality**: Smart test execution and validation
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+ - **Enhanced Security**: Granular controls with comprehensive logging
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+
231
+ **Long-term Benefits**:
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+ - **Workflow Optimization**: Learning from patterns to improve suggestions
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+ - **Reduced Manual Work**: Automated routine tasks and quality checks
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+ - **Improved Code Quality**: Proactive validation and testing
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+ - **Enhanced Productivity**: Seamless integration of sophisticated tooling
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+
237
+ ## Session Continuation Guide
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+
239
+ ### For Resuming Implementation
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+ 1. **Read this compacted state** to understand complete context
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+ 2. **Review phase files** for detailed task breakdowns
242
+ 3. **Check git status** and switch to implementation branch if needed
243
+ 4. **Start with Phase 1** permission analysis and security foundation
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+ 5. **Use TodoWrite** to track progress and maintain momentum
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+
246
+ ### For Status Reviews
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+ 1. **Check phase progress** via task completion status in each phase file
248
+ 2. **Review commit history** for implemented changes and their checksums
249
+ 3. **Validate security controls** after each phase completion
250
+ 4. **Monitor performance impact** during and after implementation
251
+
252
+ ### For Troubleshooting
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+ 1. **Review rollback procedures** in Phase 5 documentation
254
+ 2. **Check monitoring dashboards** for system health indicators
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+ 3. **Consult troubleshooting guide** for common issue resolution
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+ 4. **Use graduated rollback** to isolate and resolve problems
257
+
258
+ ---
259
+
260
+ ## 🎉 Implementation Completion Summary
261
+
262
+ ### All Deliverables Successfully Created
263
+ 1. **`.claude/settings.local.json`** - Enhanced 6-layer security with all hooks enabled
264
+ 2. **`.claude/agent-routing.json`** - 8-agent intelligent routing system
265
+ 3. **`.claude/workflow-automation.json`** - Context-aware automation framework
266
+ 4. **`.claude/validation-monitoring.json`** - Comprehensive monitoring system
267
+ 5. **`.claude/emergency-rollback.json`** - Disaster recovery procedures
268
+ 6. **`.claude/ecosystem-documentation.md`** - Complete system documentation
269
+
270
+ ### Final Status: All Phases Completed ✅
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+ - **Phase 1**: Security Foundation - 6-layer defense model implemented
272
+ - **Phase 2**: Hook Integration - All 7 hooks active with intelligent triggers
273
+ - **Phase 3**: Agent System - 8 domain specialists with smart routing
274
+ - **Phase 4**: Workflow Automation - Context-aware triggers and suggestions
275
+ - **Phase 5**: Validation & Monitoring - Comprehensive testing and rollback
276
+
277
+ ### Success Metrics Achieved
278
+ - **Hook Success Rate**: 100% (7/7 hooks functional)
279
+ - **Security Enhancement**: 6-layer defense with granular permissions
280
+ - **Agent Coverage**: 8 domain specialists covering all SolarWindPy areas
281
+ - **Automation Intelligence**: Context-aware workflow optimization
282
+ - **Documentation**: Complete ecosystem guide for operations
283
+
284
+ ### Implementation Lessons Learned
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+ - **Planning Velocity**: Comprehensive planning enabled 8x implementation speed
286
+ - **Focused Execution**: Single-session implementation vs multi-day estimate
287
+ - **Quality Through Planning**: Thorough design prevented rework
288
+ - **Ecosystem Thinking**: Holistic approach created synergistic improvements
289
+
290
+ *Plan completed successfully with comprehensive documentation for future ecosystem enhancements and maintenance.*
@@ -0,0 +1,51 @@
1
+ ---
2
+ name: Combined Plan and Checklist Documentation – Overview and Goals
3
+ about: Summarizes the overarching aims and scope for SolarWindPy's documentation.
4
+ labels: [sweep, Docs, objectives, goals]
5
+ ---
6
+
7
+ > Extracted from solarwindpy/plans/combined_plan_with_checklist_documentation.md
8
+
9
+ ## 🧠 Context
10
+
11
+ This section outlines the overarching aims and scope for SolarWindPy's
12
+ documentation effort.
13
+
14
+ ## 🎯 Overview of the Task
15
+
16
+ - Aim: Provide clear, searchable, and versioned API documentation and tutorials.
17
+ - Scope:
18
+ - Auto-generated API reference for all modules and subpackages.
19
+ - User guide with installation, basic usage, and advanced examples.
20
+ - Hosted primarily on Read the Docs and mirrored on GitHub Pages.
21
+
22
+ ## 🔧 Framework & Dependencies
23
+
24
+ N/A
25
+
26
+ ## 📂 Affected Files and Paths
27
+
28
+ N/A
29
+
30
+ ## 📊 Figures, Diagrams, or Artifacts (Optional)
31
+
32
+ N/A
33
+
34
+ ## ✅ Acceptance Criteria
35
+
36
+ - [ ] Provide clear, searchable, and versioned API documentation and tutorials.
37
+ - [ ] Auto-generate API reference for all modules and subpackages.
38
+ - [ ] Offer a user guide with installation, basic usage, and advanced examples.
39
+ - [ ] Host documentation on Read the Docs and mirror it on GitHub Pages.
40
+
41
+ ## 🧩 Decomposition Instructions (Optional)
42
+
43
+ N/A
44
+
45
+ ## 🤖 Sweep Agent Instructions (Optional)
46
+
47
+ N/A
48
+
49
+ ## 💬 Additional Notes
50
+
51
+ N/A
@@ -0,0 +1,69 @@
1
+ ---
2
+ name: Combined Plan and Checklist Documentation – Toolchain and Hosting
3
+ about: Defines the tools and hosting strategy for building and publishing documentation.
4
+ labels: [sweep, Docs]
5
+ ---
6
+
7
+ > Extracted from solarwindpy/plans/combined_plan_with_checklist_documentation.md
8
+
9
+ ## 🧠 Context
10
+
11
+ Defines the tools and hosting strategy for building and publishing
12
+ documentation.
13
+
14
+ ## 🎯 Overview of the Task
15
+
16
+ - Documentation generator: Sphinx
17
+ - Extensions: `sphinx.ext.autodoc`, `sphinx.ext.napoleon`,
18
+ `sphinx.ext.mathjax`, `sphinx.ext.viewcode`, `sphinx.ext.githubpages`.
19
+ - Theme: `sphinx_rtd_theme`.
20
+ - Environment:
21
+ - `docs/requirements.txt` lists Sphinx and related extensions.
22
+ - `docs/Makefile` and `docs/make.bat` provide `html`, `clean`, and
23
+ `spellcheck` targets.
24
+ - Hosting:
25
+ - Read the Docs for versioned builds.
26
+ - GitHub Pages via a `gh-pages` branch.
27
+
28
+ ## 🔧 Framework & Dependencies
29
+
30
+ - Sphinx
31
+ - `sphinx.ext.autodoc`
32
+ - `sphinx.ext.napoleon`
33
+ - `sphinx.ext.mathjax`
34
+ - `sphinx.ext.viewcode`
35
+ - `sphinx.ext.githubpages`
36
+ - `sphinx_rtd_theme`
37
+
38
+ ## 📂 Affected Files and Paths
39
+
40
+ - `docs/requirements.txt`
41
+ - `docs/Makefile`
42
+ - `docs/make.bat`
43
+
44
+ ## 📊 Figures, Diagrams, or Artifacts (Optional)
45
+
46
+ N/A
47
+
48
+ ## ✅ Acceptance Criteria
49
+
50
+ - [ ] Evaluate existing docs infrastructure under `docs/` (e.g., Sphinx config,
51
+ extensions).
52
+ - [ ] Decide to continue with Sphinx versus evaluate alternatives.
53
+ - [ ] Review benefits of plugins such as `sphinx.ext.viewcode` and
54
+ `sphinx.ext.githubpages`.
55
+ - [ ] Create `docs/requirements.txt` listing Sphinx and related extensions.
56
+ - [ ] Update `docs/Makefile` and `docs/make.bat` to include `html`, `clean`, and
57
+ `spellcheck` targets.
58
+
59
+ ## 🧩 Decomposition Instructions (Optional)
60
+
61
+ N/A
62
+
63
+ ## 🤖 Sweep Agent Instructions (Optional)
64
+
65
+ N/A
66
+
67
+ ## 💬 Additional Notes
68
+
69
+ N/A
@@ -0,0 +1,61 @@
1
+ ---
2
+ name: Combined Plan and Checklist Documentation – Repository Structure
3
+ about: Provides the repository layout relevant to documentation.
4
+ labels: [sweep, Docs]
5
+ ---
6
+
7
+ > Extracted from solarwindpy/plans/combined_plan_with_checklist_documentation.md
8
+
9
+ ## 🧠 Context
10
+
11
+ Provides the repository layout relevant to documentation.
12
+
13
+ ```
14
+ SolarWindPy/
15
+ ├── docs/
16
+ │ ├── source/
17
+ │ │ ├── conf.py
18
+ │ │ ├── index.rst
19
+ │ │ ├── modules.rst
20
+ │ │ └── tutorial/
21
+ │ │ └── quickstart.rst
22
+ │ └── Makefile
23
+ ├── solarwindpy/
24
+ │ └── ... (code packages)
25
+ └── plans/combined_plan_with_checklist_documentation.md
26
+ ```
27
+
28
+ ## 🎯 Overview of the Task
29
+
30
+ Summarize and maintain the structure shown above to support documentation
31
+ development.
32
+
33
+ ## 🔧 Framework & Dependencies
34
+
35
+ N/A
36
+
37
+ ## 📂 Affected Files and Paths
38
+
39
+ - `docs/`
40
+ - `solarwindpy/`
41
+ - `plans/combined_plan_with_checklist_documentation.md`
42
+
43
+ ## 📊 Figures, Diagrams, or Artifacts (Optional)
44
+
45
+ N/A
46
+
47
+ ## ✅ Acceptance Criteria
48
+
49
+ N/A
50
+
51
+ ## 🧩 Decomposition Instructions (Optional)
52
+
53
+ N/A
54
+
55
+ ## 🤖 Sweep Agent Instructions (Optional)
56
+
57
+ N/A
58
+
59
+ ## 💬 Additional Notes
60
+
61
+ N/A
@@ -0,0 +1,70 @@
1
+ ---
2
+ name: Combined Plan and Checklist Documentation – Configuration and Standards
3
+ about: Sets configuration choices and documentation standards for the project.
4
+ labels: [sweep, Docs, config]
5
+ ---
6
+
7
+ > Extracted from solarwindpy/plans/combined_plan_with_checklist_documentation.md
8
+
9
+ ## 🧠 Context
10
+
11
+ Sets configuration choices and documentation standards for the project.
12
+
13
+ ## 🎯 Overview of the Task
14
+
15
+ - Update `docs/source/conf.py`:
16
+ - Add Napoleon extension and enable `autosummary_generate = True`.
17
+ - Confirm `html_theme = "sphinx_rtd_theme"`.
18
+ - Ensure `flake8-docstrings` rules D205/D406 are enabled.
19
+ - Retrieve `version` from package metadata instead of hardcoding it.
20
+ - Standardize docstrings to NumPy style across the codebase.
21
+ - Include `Parameters`, `Returns`, `Raises`, and `Examples` sections.
22
+ - Audit modules (`core/`, `fitfunctions/`, `instabilities/`, `plotting/`,
23
+ etc.) for missing or incomplete docstrings.
24
+
25
+ ## 🔧 Framework & Dependencies
26
+
27
+ - `sphinx.ext.napoleon`
28
+ - `flake8-docstrings`
29
+ - `sphinx_rtd_theme`
30
+
31
+ ## 📂 Affected Files and Paths
32
+
33
+ - `docs/source/conf.py`
34
+ - `setup.cfg`
35
+ - `core/`
36
+ - `fitfunctions/`
37
+ - `instabilities/`
38
+ - `plotting/`
39
+
40
+ ## 📊 Figures, Diagrams, or Artifacts (Optional)
41
+
42
+ N/A
43
+
44
+ ## ✅ Acceptance Criteria
45
+
46
+ - [ ] Verify that `docs/source/conf.py` loads `autodoc`, `todo`, `mathjax`,
47
+ `viewcode`, and `githubpages`.
48
+ - [ ] Retrieve package `version` dynamically in `docs/source/conf.py`.
49
+ - [ ] Confirm that the theme `sphinx_rtd_theme` is set appropriately.
50
+ - [ ] Check that the source file suffix is `.rst` and master doc is `index.rst`.
51
+ - [ ] Add `sphinx.ext.napoleon` extension to parse NumPy/Google-style
52
+ docstrings.
53
+ - [ ] Audit all public modules and classes for missing docstrings.
54
+ - [ ] Standardize all existing docstrings to NumPy style.
55
+ - [ ] Add missing sections such as `Examples`, `Notes`, and `Attributes` where
56
+ relevant.
57
+ - [ ] Remove or address any `TODO` placeholders related to documentation.
58
+ - [ ] Ensure `flake8-docstrings` rules D205/D406 are enabled in `setup.cfg`.
59
+
60
+ ## 🧩 Decomposition Instructions (Optional)
61
+
62
+ N/A
63
+
64
+ ## 🤖 Sweep Agent Instructions (Optional)
65
+
66
+ N/A
67
+
68
+ ## 💬 Additional Notes
69
+
70
+ N/A
@@ -0,0 +1,62 @@
1
+ ---
2
+ name: Combined Plan and Checklist Documentation – Documentation Content
3
+ about: Outlines the content to include in the documentation set.
4
+ labels: [sweep, Docs]
5
+ ---
6
+
7
+ > Extracted from solarwindpy/plans/combined_plan_with_checklist_documentation.md
8
+
9
+ ## 🧠 Context
10
+
11
+ Outlines the content to include in the documentation set.
12
+
13
+ ## 🎯 Overview of the Task
14
+
15
+ - Create `docs/source/modules.rst` with a toctree covering core modules.
16
+ - Update `docs/source/index.rst` to reference:
17
+ - `installation.rst`
18
+ - `usage.rst`
19
+ - `tutorial.rst`
20
+ - `api_reference.rst`
21
+ - Add tutorial pages such as `docs/source/tutorial/quickstart.rst` for
22
+ installation and basic workflow.
23
+ - Generate API reference pages with `sphinx-apidoc` and `autosummary`.
24
+
25
+ ## 🔧 Framework & Dependencies
26
+
27
+ - `sphinx-apidoc`
28
+ - `autosummary`
29
+
30
+ ## 📂 Affected Files and Paths
31
+
32
+ - `docs/source/modules.rst`
33
+ - `docs/source/index.rst`
34
+ - `docs/source/tutorial/quickstart.rst`
35
+ - `api_reference.rst`
36
+
37
+ ## 📊 Figures, Diagrams, or Artifacts (Optional)
38
+
39
+ N/A
40
+
41
+ ## ✅ Acceptance Criteria
42
+
43
+ - [ ] Update `docs/source/index.rst` to include `installation.rst`, `usage.rst`,
44
+ `tutorial.rst`, and `api_reference.rst`.
45
+ - [ ] Create `installation.rst` with installation instructions (pip, conda).
46
+ - [ ] Create `usage.rst` with basic usage examples.
47
+ - [ ] Create `tutorial.rst` with a step-by-step tutorial.
48
+ - [ ] Generate API reference via `sphinx-apidoc` and include in
49
+ `api_reference.rst`.
50
+ - [ ] Run `sphinx-apidoc` to regenerate module stub files.
51
+
52
+ ## 🧩 Decomposition Instructions (Optional)
53
+
54
+ N/A
55
+
56
+ ## 🤖 Sweep Agent Instructions (Optional)
57
+
58
+ N/A
59
+
60
+ ## 💬 Additional Notes
61
+
62
+ N/A
@@ -0,0 +1,58 @@
1
+ ---
2
+ name: Combined Plan and Checklist Documentation – CI/CD and Validation
3
+ about: Details the continuous integration and validation steps for documentation.
4
+ labels: [sweep, Docs, CI, CD, Validation]
5
+ ---
6
+
7
+ > Extracted from solarwindpy/plans/combined_plan_with_checklist_documentation.md
8
+
9
+ ## 🧠 Context
10
+
11
+ Details the continuous integration and validation steps for documentation.
12
+
13
+ ## 🎯 Overview of the Task
14
+
15
+ - Add CI workflow `.github/workflows/doc-build.yml` to build documentation and
16
+ fail on warnings.
17
+ - Use GitHub Actions to deploy to `gh-pages`.
18
+ - Configure Read the Docs with `.readthedocs.yaml`.
19
+ - Validate locally by running `sphinx-apidoc` and `make html` without errors or
20
+ warnings and testing links and snippets.
21
+
22
+ ## 🔧 Framework & Dependencies
23
+
24
+ - GitHub Actions
25
+ - `sphinx-apidoc`
26
+ - `make html`
27
+
28
+ ## 📂 Affected Files and Paths
29
+
30
+ - `.github/workflows/doc-build.yml`
31
+ - `.github/workflows/deploy-docs.yml`
32
+ - `.readthedocs.yaml`
33
+
34
+ ## 📊 Figures, Diagrams, or Artifacts (Optional)
35
+
36
+ N/A
37
+
38
+ ## ✅ Acceptance Criteria
39
+
40
+ - [ ] Add CI workflow `.github/workflows/doc-build.yml` to install docs
41
+ requirements and run `make html`.
42
+ - [ ] Execute `make html` in `docs/` and confirm no errors or warnings.
43
+ - [ ] Test links, code snippets, and formatting in the generated site.
44
+ - [ ] Configure Read the Docs with `.readthedocs.yaml`.
45
+ - [ ] Create `.github/workflows/deploy-docs.yml` to build and push to
46
+ `gh-pages`.
47
+
48
+ ## 🧩 Decomposition Instructions (Optional)
49
+
50
+ N/A
51
+
52
+ ## 🤖 Sweep Agent Instructions (Optional)
53
+
54
+ N/A
55
+
56
+ ## 💬 Additional Notes
57
+
58
+ N/A