numpy 2.4.1__pp311-pypy311_pp73-macosx_14_0_arm64.whl

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Files changed (1039) hide show
  1. numpy/__config__.py +170 -0
  2. numpy/__config__.pyi +108 -0
  3. numpy/__init__.cython-30.pxd +1242 -0
  4. numpy/__init__.pxd +1155 -0
  5. numpy/__init__.py +942 -0
  6. numpy/__init__.pyi +6202 -0
  7. numpy/_array_api_info.py +346 -0
  8. numpy/_array_api_info.pyi +206 -0
  9. numpy/_configtool.py +39 -0
  10. numpy/_configtool.pyi +1 -0
  11. numpy/_core/__init__.py +201 -0
  12. numpy/_core/__init__.pyi +666 -0
  13. numpy/_core/_add_newdocs.py +7151 -0
  14. numpy/_core/_add_newdocs.pyi +2 -0
  15. numpy/_core/_add_newdocs_scalars.py +381 -0
  16. numpy/_core/_add_newdocs_scalars.pyi +16 -0
  17. numpy/_core/_asarray.py +130 -0
  18. numpy/_core/_asarray.pyi +43 -0
  19. numpy/_core/_dtype.py +366 -0
  20. numpy/_core/_dtype.pyi +56 -0
  21. numpy/_core/_dtype_ctypes.py +120 -0
  22. numpy/_core/_dtype_ctypes.pyi +83 -0
  23. numpy/_core/_exceptions.py +162 -0
  24. numpy/_core/_exceptions.pyi +54 -0
  25. numpy/_core/_internal.py +968 -0
  26. numpy/_core/_internal.pyi +61 -0
  27. numpy/_core/_methods.py +252 -0
  28. numpy/_core/_methods.pyi +22 -0
  29. numpy/_core/_multiarray_tests.pypy311-pp73-darwin.so +0 -0
  30. numpy/_core/_multiarray_umath.pypy311-pp73-darwin.so +0 -0
  31. numpy/_core/_operand_flag_tests.pypy311-pp73-darwin.so +0 -0
  32. numpy/_core/_rational_tests.pypy311-pp73-darwin.so +0 -0
  33. numpy/_core/_simd.pyi +35 -0
  34. numpy/_core/_simd.pypy311-pp73-darwin.so +0 -0
  35. numpy/_core/_string_helpers.py +100 -0
  36. numpy/_core/_string_helpers.pyi +12 -0
  37. numpy/_core/_struct_ufunc_tests.pypy311-pp73-darwin.so +0 -0
  38. numpy/_core/_type_aliases.py +131 -0
  39. numpy/_core/_type_aliases.pyi +86 -0
  40. numpy/_core/_ufunc_config.py +515 -0
  41. numpy/_core/_ufunc_config.pyi +69 -0
  42. numpy/_core/_umath_tests.pyi +47 -0
  43. numpy/_core/_umath_tests.pypy311-pp73-darwin.so +0 -0
  44. numpy/_core/arrayprint.py +1779 -0
  45. numpy/_core/arrayprint.pyi +158 -0
  46. numpy/_core/cversions.py +13 -0
  47. numpy/_core/defchararray.py +1414 -0
  48. numpy/_core/defchararray.pyi +1150 -0
  49. numpy/_core/einsumfunc.py +1650 -0
  50. numpy/_core/einsumfunc.pyi +184 -0
  51. numpy/_core/fromnumeric.py +4233 -0
  52. numpy/_core/fromnumeric.pyi +1735 -0
  53. numpy/_core/function_base.py +547 -0
  54. numpy/_core/function_base.pyi +276 -0
  55. numpy/_core/getlimits.py +462 -0
  56. numpy/_core/getlimits.pyi +124 -0
  57. numpy/_core/include/numpy/__multiarray_api.c +376 -0
  58. numpy/_core/include/numpy/__multiarray_api.h +1628 -0
  59. numpy/_core/include/numpy/__ufunc_api.c +55 -0
  60. numpy/_core/include/numpy/__ufunc_api.h +349 -0
  61. numpy/_core/include/numpy/_neighborhood_iterator_imp.h +90 -0
  62. numpy/_core/include/numpy/_numpyconfig.h +33 -0
  63. numpy/_core/include/numpy/_public_dtype_api_table.h +86 -0
  64. numpy/_core/include/numpy/arrayobject.h +7 -0
  65. numpy/_core/include/numpy/arrayscalars.h +198 -0
  66. numpy/_core/include/numpy/dtype_api.h +547 -0
  67. numpy/_core/include/numpy/halffloat.h +70 -0
  68. numpy/_core/include/numpy/ndarrayobject.h +304 -0
  69. numpy/_core/include/numpy/ndarraytypes.h +1982 -0
  70. numpy/_core/include/numpy/npy_2_compat.h +249 -0
  71. numpy/_core/include/numpy/npy_2_complexcompat.h +28 -0
  72. numpy/_core/include/numpy/npy_3kcompat.h +374 -0
  73. numpy/_core/include/numpy/npy_common.h +989 -0
  74. numpy/_core/include/numpy/npy_cpu.h +126 -0
  75. numpy/_core/include/numpy/npy_endian.h +79 -0
  76. numpy/_core/include/numpy/npy_math.h +602 -0
  77. numpy/_core/include/numpy/npy_no_deprecated_api.h +20 -0
  78. numpy/_core/include/numpy/npy_os.h +42 -0
  79. numpy/_core/include/numpy/numpyconfig.h +185 -0
  80. numpy/_core/include/numpy/random/LICENSE.txt +21 -0
  81. numpy/_core/include/numpy/random/bitgen.h +20 -0
  82. numpy/_core/include/numpy/random/distributions.h +209 -0
  83. numpy/_core/include/numpy/random/libdivide.h +2079 -0
  84. numpy/_core/include/numpy/ufuncobject.h +343 -0
  85. numpy/_core/include/numpy/utils.h +37 -0
  86. numpy/_core/lib/libnpymath.a +0 -0
  87. numpy/_core/lib/npy-pkg-config/mlib.ini +12 -0
  88. numpy/_core/lib/npy-pkg-config/npymath.ini +20 -0
  89. numpy/_core/lib/pkgconfig/numpy.pc +7 -0
  90. numpy/_core/memmap.py +363 -0
  91. numpy/_core/memmap.pyi +3 -0
  92. numpy/_core/multiarray.py +1740 -0
  93. numpy/_core/multiarray.pyi +1316 -0
  94. numpy/_core/numeric.py +2758 -0
  95. numpy/_core/numeric.pyi +1276 -0
  96. numpy/_core/numerictypes.py +633 -0
  97. numpy/_core/numerictypes.pyi +196 -0
  98. numpy/_core/overrides.py +188 -0
  99. numpy/_core/overrides.pyi +47 -0
  100. numpy/_core/printoptions.py +32 -0
  101. numpy/_core/printoptions.pyi +28 -0
  102. numpy/_core/records.py +1088 -0
  103. numpy/_core/records.pyi +340 -0
  104. numpy/_core/shape_base.py +996 -0
  105. numpy/_core/shape_base.pyi +182 -0
  106. numpy/_core/strings.py +1813 -0
  107. numpy/_core/strings.pyi +536 -0
  108. numpy/_core/tests/_locales.py +72 -0
  109. numpy/_core/tests/_natype.py +144 -0
  110. numpy/_core/tests/data/astype_copy.pkl +0 -0
  111. numpy/_core/tests/data/generate_umath_validation_data.cpp +170 -0
  112. numpy/_core/tests/data/recarray_from_file.fits +0 -0
  113. numpy/_core/tests/data/umath-validation-set-README.txt +15 -0
  114. numpy/_core/tests/data/umath-validation-set-arccos.csv +1429 -0
  115. numpy/_core/tests/data/umath-validation-set-arccosh.csv +1429 -0
  116. numpy/_core/tests/data/umath-validation-set-arcsin.csv +1429 -0
  117. numpy/_core/tests/data/umath-validation-set-arcsinh.csv +1429 -0
  118. numpy/_core/tests/data/umath-validation-set-arctan.csv +1429 -0
  119. numpy/_core/tests/data/umath-validation-set-arctanh.csv +1429 -0
  120. numpy/_core/tests/data/umath-validation-set-cbrt.csv +1429 -0
  121. numpy/_core/tests/data/umath-validation-set-cos.csv +1375 -0
  122. numpy/_core/tests/data/umath-validation-set-cosh.csv +1429 -0
  123. numpy/_core/tests/data/umath-validation-set-exp.csv +412 -0
  124. numpy/_core/tests/data/umath-validation-set-exp2.csv +1429 -0
  125. numpy/_core/tests/data/umath-validation-set-expm1.csv +1429 -0
  126. numpy/_core/tests/data/umath-validation-set-log.csv +271 -0
  127. numpy/_core/tests/data/umath-validation-set-log10.csv +1629 -0
  128. numpy/_core/tests/data/umath-validation-set-log1p.csv +1429 -0
  129. numpy/_core/tests/data/umath-validation-set-log2.csv +1629 -0
  130. numpy/_core/tests/data/umath-validation-set-sin.csv +1370 -0
  131. numpy/_core/tests/data/umath-validation-set-sinh.csv +1429 -0
  132. numpy/_core/tests/data/umath-validation-set-tan.csv +1429 -0
  133. numpy/_core/tests/data/umath-validation-set-tanh.csv +1429 -0
  134. numpy/_core/tests/examples/cython/checks.pyx +373 -0
  135. numpy/_core/tests/examples/cython/meson.build +43 -0
  136. numpy/_core/tests/examples/cython/setup.py +39 -0
  137. numpy/_core/tests/examples/limited_api/limited_api1.c +17 -0
  138. numpy/_core/tests/examples/limited_api/limited_api2.pyx +11 -0
  139. numpy/_core/tests/examples/limited_api/limited_api_latest.c +19 -0
  140. numpy/_core/tests/examples/limited_api/meson.build +59 -0
  141. numpy/_core/tests/examples/limited_api/setup.py +24 -0
  142. numpy/_core/tests/test__exceptions.py +90 -0
  143. numpy/_core/tests/test_abc.py +54 -0
  144. numpy/_core/tests/test_api.py +655 -0
  145. numpy/_core/tests/test_argparse.py +90 -0
  146. numpy/_core/tests/test_array_api_info.py +113 -0
  147. numpy/_core/tests/test_array_coercion.py +928 -0
  148. numpy/_core/tests/test_array_interface.py +222 -0
  149. numpy/_core/tests/test_arraymethod.py +84 -0
  150. numpy/_core/tests/test_arrayobject.py +75 -0
  151. numpy/_core/tests/test_arrayprint.py +1324 -0
  152. numpy/_core/tests/test_casting_floatingpoint_errors.py +154 -0
  153. numpy/_core/tests/test_casting_unittests.py +955 -0
  154. numpy/_core/tests/test_conversion_utils.py +209 -0
  155. numpy/_core/tests/test_cpu_dispatcher.py +48 -0
  156. numpy/_core/tests/test_cpu_features.py +450 -0
  157. numpy/_core/tests/test_custom_dtypes.py +393 -0
  158. numpy/_core/tests/test_cython.py +352 -0
  159. numpy/_core/tests/test_datetime.py +2792 -0
  160. numpy/_core/tests/test_defchararray.py +858 -0
  161. numpy/_core/tests/test_deprecations.py +460 -0
  162. numpy/_core/tests/test_dlpack.py +190 -0
  163. numpy/_core/tests/test_dtype.py +2110 -0
  164. numpy/_core/tests/test_einsum.py +1351 -0
  165. numpy/_core/tests/test_errstate.py +131 -0
  166. numpy/_core/tests/test_extint128.py +217 -0
  167. numpy/_core/tests/test_finfo.py +86 -0
  168. numpy/_core/tests/test_function_base.py +504 -0
  169. numpy/_core/tests/test_getlimits.py +171 -0
  170. numpy/_core/tests/test_half.py +593 -0
  171. numpy/_core/tests/test_hashtable.py +36 -0
  172. numpy/_core/tests/test_indexerrors.py +122 -0
  173. numpy/_core/tests/test_indexing.py +1692 -0
  174. numpy/_core/tests/test_item_selection.py +167 -0
  175. numpy/_core/tests/test_limited_api.py +102 -0
  176. numpy/_core/tests/test_longdouble.py +370 -0
  177. numpy/_core/tests/test_mem_overlap.py +933 -0
  178. numpy/_core/tests/test_mem_policy.py +453 -0
  179. numpy/_core/tests/test_memmap.py +248 -0
  180. numpy/_core/tests/test_multiarray.py +11008 -0
  181. numpy/_core/tests/test_multiprocessing.py +55 -0
  182. numpy/_core/tests/test_multithreading.py +377 -0
  183. numpy/_core/tests/test_nditer.py +3533 -0
  184. numpy/_core/tests/test_nep50_promotions.py +287 -0
  185. numpy/_core/tests/test_numeric.py +4295 -0
  186. numpy/_core/tests/test_numerictypes.py +650 -0
  187. numpy/_core/tests/test_overrides.py +800 -0
  188. numpy/_core/tests/test_print.py +202 -0
  189. numpy/_core/tests/test_protocols.py +46 -0
  190. numpy/_core/tests/test_records.py +544 -0
  191. numpy/_core/tests/test_regression.py +2677 -0
  192. numpy/_core/tests/test_scalar_ctors.py +203 -0
  193. numpy/_core/tests/test_scalar_methods.py +328 -0
  194. numpy/_core/tests/test_scalarbuffer.py +153 -0
  195. numpy/_core/tests/test_scalarinherit.py +105 -0
  196. numpy/_core/tests/test_scalarmath.py +1168 -0
  197. numpy/_core/tests/test_scalarprint.py +403 -0
  198. numpy/_core/tests/test_shape_base.py +904 -0
  199. numpy/_core/tests/test_simd.py +1345 -0
  200. numpy/_core/tests/test_simd_module.py +105 -0
  201. numpy/_core/tests/test_stringdtype.py +1855 -0
  202. numpy/_core/tests/test_strings.py +1523 -0
  203. numpy/_core/tests/test_ufunc.py +3405 -0
  204. numpy/_core/tests/test_umath.py +4962 -0
  205. numpy/_core/tests/test_umath_accuracy.py +132 -0
  206. numpy/_core/tests/test_umath_complex.py +631 -0
  207. numpy/_core/tests/test_unicode.py +369 -0
  208. numpy/_core/umath.py +60 -0
  209. numpy/_core/umath.pyi +232 -0
  210. numpy/_distributor_init.py +15 -0
  211. numpy/_distributor_init.pyi +1 -0
  212. numpy/_expired_attrs_2_0.py +78 -0
  213. numpy/_expired_attrs_2_0.pyi +61 -0
  214. numpy/_globals.py +121 -0
  215. numpy/_globals.pyi +17 -0
  216. numpy/_pyinstaller/__init__.py +0 -0
  217. numpy/_pyinstaller/__init__.pyi +0 -0
  218. numpy/_pyinstaller/hook-numpy.py +36 -0
  219. numpy/_pyinstaller/hook-numpy.pyi +6 -0
  220. numpy/_pyinstaller/tests/__init__.py +16 -0
  221. numpy/_pyinstaller/tests/pyinstaller-smoke.py +32 -0
  222. numpy/_pyinstaller/tests/test_pyinstaller.py +35 -0
  223. numpy/_pytesttester.py +201 -0
  224. numpy/_pytesttester.pyi +18 -0
  225. numpy/_typing/__init__.py +173 -0
  226. numpy/_typing/_add_docstring.py +153 -0
  227. numpy/_typing/_array_like.py +106 -0
  228. numpy/_typing/_char_codes.py +213 -0
  229. numpy/_typing/_dtype_like.py +114 -0
  230. numpy/_typing/_extended_precision.py +15 -0
  231. numpy/_typing/_nbit.py +19 -0
  232. numpy/_typing/_nbit_base.py +94 -0
  233. numpy/_typing/_nbit_base.pyi +39 -0
  234. numpy/_typing/_nested_sequence.py +79 -0
  235. numpy/_typing/_scalars.py +20 -0
  236. numpy/_typing/_shape.py +8 -0
  237. numpy/_typing/_ufunc.py +7 -0
  238. numpy/_typing/_ufunc.pyi +975 -0
  239. numpy/_utils/__init__.py +95 -0
  240. numpy/_utils/__init__.pyi +28 -0
  241. numpy/_utils/_convertions.py +18 -0
  242. numpy/_utils/_convertions.pyi +4 -0
  243. numpy/_utils/_inspect.py +192 -0
  244. numpy/_utils/_inspect.pyi +70 -0
  245. numpy/_utils/_pep440.py +486 -0
  246. numpy/_utils/_pep440.pyi +118 -0
  247. numpy/char/__init__.py +2 -0
  248. numpy/char/__init__.pyi +111 -0
  249. numpy/conftest.py +248 -0
  250. numpy/core/__init__.py +33 -0
  251. numpy/core/__init__.pyi +0 -0
  252. numpy/core/_dtype.py +10 -0
  253. numpy/core/_dtype.pyi +0 -0
  254. numpy/core/_dtype_ctypes.py +10 -0
  255. numpy/core/_dtype_ctypes.pyi +0 -0
  256. numpy/core/_internal.py +27 -0
  257. numpy/core/_multiarray_umath.py +57 -0
  258. numpy/core/_utils.py +21 -0
  259. numpy/core/arrayprint.py +10 -0
  260. numpy/core/defchararray.py +10 -0
  261. numpy/core/einsumfunc.py +10 -0
  262. numpy/core/fromnumeric.py +10 -0
  263. numpy/core/function_base.py +10 -0
  264. numpy/core/getlimits.py +10 -0
  265. numpy/core/multiarray.py +25 -0
  266. numpy/core/numeric.py +12 -0
  267. numpy/core/numerictypes.py +10 -0
  268. numpy/core/overrides.py +10 -0
  269. numpy/core/overrides.pyi +7 -0
  270. numpy/core/records.py +10 -0
  271. numpy/core/shape_base.py +10 -0
  272. numpy/core/umath.py +10 -0
  273. numpy/ctypeslib/__init__.py +13 -0
  274. numpy/ctypeslib/__init__.pyi +15 -0
  275. numpy/ctypeslib/_ctypeslib.py +603 -0
  276. numpy/ctypeslib/_ctypeslib.pyi +236 -0
  277. numpy/distutils/__init__.py +64 -0
  278. numpy/distutils/__init__.pyi +4 -0
  279. numpy/distutils/__pycache__/conv_template.pypy311.pyc +0 -0
  280. numpy/distutils/_shell_utils.py +87 -0
  281. numpy/distutils/armccompiler.py +26 -0
  282. numpy/distutils/ccompiler.py +826 -0
  283. numpy/distutils/ccompiler_opt.py +2668 -0
  284. numpy/distutils/checks/cpu_asimd.c +27 -0
  285. numpy/distutils/checks/cpu_asimddp.c +16 -0
  286. numpy/distutils/checks/cpu_asimdfhm.c +19 -0
  287. numpy/distutils/checks/cpu_asimdhp.c +15 -0
  288. numpy/distutils/checks/cpu_avx.c +20 -0
  289. numpy/distutils/checks/cpu_avx2.c +20 -0
  290. numpy/distutils/checks/cpu_avx512_clx.c +22 -0
  291. numpy/distutils/checks/cpu_avx512_cnl.c +24 -0
  292. numpy/distutils/checks/cpu_avx512_icl.c +26 -0
  293. numpy/distutils/checks/cpu_avx512_knl.c +25 -0
  294. numpy/distutils/checks/cpu_avx512_knm.c +30 -0
  295. numpy/distutils/checks/cpu_avx512_skx.c +26 -0
  296. numpy/distutils/checks/cpu_avx512_spr.c +26 -0
  297. numpy/distutils/checks/cpu_avx512cd.c +20 -0
  298. numpy/distutils/checks/cpu_avx512f.c +20 -0
  299. numpy/distutils/checks/cpu_f16c.c +22 -0
  300. numpy/distutils/checks/cpu_fma3.c +22 -0
  301. numpy/distutils/checks/cpu_fma4.c +13 -0
  302. numpy/distutils/checks/cpu_lsx.c +11 -0
  303. numpy/distutils/checks/cpu_neon.c +19 -0
  304. numpy/distutils/checks/cpu_neon_fp16.c +11 -0
  305. numpy/distutils/checks/cpu_neon_vfpv4.c +21 -0
  306. numpy/distutils/checks/cpu_popcnt.c +32 -0
  307. numpy/distutils/checks/cpu_rvv.c +13 -0
  308. numpy/distutils/checks/cpu_sse.c +20 -0
  309. numpy/distutils/checks/cpu_sse2.c +20 -0
  310. numpy/distutils/checks/cpu_sse3.c +20 -0
  311. numpy/distutils/checks/cpu_sse41.c +20 -0
  312. numpy/distutils/checks/cpu_sse42.c +20 -0
  313. numpy/distutils/checks/cpu_ssse3.c +20 -0
  314. numpy/distutils/checks/cpu_sve.c +14 -0
  315. numpy/distutils/checks/cpu_vsx.c +21 -0
  316. numpy/distutils/checks/cpu_vsx2.c +13 -0
  317. numpy/distutils/checks/cpu_vsx3.c +13 -0
  318. numpy/distutils/checks/cpu_vsx4.c +14 -0
  319. numpy/distutils/checks/cpu_vx.c +16 -0
  320. numpy/distutils/checks/cpu_vxe.c +25 -0
  321. numpy/distutils/checks/cpu_vxe2.c +21 -0
  322. numpy/distutils/checks/cpu_xop.c +12 -0
  323. numpy/distutils/checks/extra_avx512bw_mask.c +18 -0
  324. numpy/distutils/checks/extra_avx512dq_mask.c +16 -0
  325. numpy/distutils/checks/extra_avx512f_reduce.c +41 -0
  326. numpy/distutils/checks/extra_vsx3_half_double.c +12 -0
  327. numpy/distutils/checks/extra_vsx4_mma.c +21 -0
  328. numpy/distutils/checks/extra_vsx_asm.c +36 -0
  329. numpy/distutils/checks/test_flags.c +1 -0
  330. numpy/distutils/command/__init__.py +41 -0
  331. numpy/distutils/command/autodist.py +148 -0
  332. numpy/distutils/command/bdist_rpm.py +22 -0
  333. numpy/distutils/command/build.py +62 -0
  334. numpy/distutils/command/build_clib.py +469 -0
  335. numpy/distutils/command/build_ext.py +752 -0
  336. numpy/distutils/command/build_py.py +31 -0
  337. numpy/distutils/command/build_scripts.py +49 -0
  338. numpy/distutils/command/build_src.py +773 -0
  339. numpy/distutils/command/config.py +516 -0
  340. numpy/distutils/command/config_compiler.py +126 -0
  341. numpy/distutils/command/develop.py +15 -0
  342. numpy/distutils/command/egg_info.py +25 -0
  343. numpy/distutils/command/install.py +79 -0
  344. numpy/distutils/command/install_clib.py +40 -0
  345. numpy/distutils/command/install_data.py +24 -0
  346. numpy/distutils/command/install_headers.py +25 -0
  347. numpy/distutils/command/sdist.py +27 -0
  348. numpy/distutils/conv_template.py +329 -0
  349. numpy/distutils/core.py +215 -0
  350. numpy/distutils/cpuinfo.py +683 -0
  351. numpy/distutils/exec_command.py +315 -0
  352. numpy/distutils/extension.py +101 -0
  353. numpy/distutils/fcompiler/__init__.py +1035 -0
  354. numpy/distutils/fcompiler/absoft.py +158 -0
  355. numpy/distutils/fcompiler/arm.py +71 -0
  356. numpy/distutils/fcompiler/compaq.py +120 -0
  357. numpy/distutils/fcompiler/environment.py +88 -0
  358. numpy/distutils/fcompiler/fujitsu.py +46 -0
  359. numpy/distutils/fcompiler/g95.py +42 -0
  360. numpy/distutils/fcompiler/gnu.py +555 -0
  361. numpy/distutils/fcompiler/hpux.py +41 -0
  362. numpy/distutils/fcompiler/ibm.py +97 -0
  363. numpy/distutils/fcompiler/intel.py +211 -0
  364. numpy/distutils/fcompiler/lahey.py +45 -0
  365. numpy/distutils/fcompiler/mips.py +54 -0
  366. numpy/distutils/fcompiler/nag.py +87 -0
  367. numpy/distutils/fcompiler/none.py +28 -0
  368. numpy/distutils/fcompiler/nv.py +53 -0
  369. numpy/distutils/fcompiler/pathf95.py +33 -0
  370. numpy/distutils/fcompiler/pg.py +128 -0
  371. numpy/distutils/fcompiler/sun.py +51 -0
  372. numpy/distutils/fcompiler/vast.py +52 -0
  373. numpy/distutils/from_template.py +261 -0
  374. numpy/distutils/fujitsuccompiler.py +28 -0
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@@ -0,0 +1,182 @@
1
+ """ Test functions for linalg module
2
+ """
3
+
4
+ import pytest
5
+
6
+ import numpy as np
7
+ from numpy import arange, array, dot, float64, linalg, transpose
8
+ from numpy.testing import (
9
+ assert_,
10
+ assert_array_almost_equal,
11
+ assert_array_equal,
12
+ assert_array_less,
13
+ assert_equal,
14
+ assert_raises,
15
+ )
16
+
17
+
18
+ class TestRegression:
19
+
20
+ def test_eig_build(self):
21
+ # Ticket #652
22
+ rva = array([1.03221168e+02 + 0.j,
23
+ -1.91843603e+01 + 0.j,
24
+ -6.04004526e-01 + 15.84422474j,
25
+ -6.04004526e-01 - 15.84422474j,
26
+ -1.13692929e+01 + 0.j,
27
+ -6.57612485e-01 + 10.41755503j,
28
+ -6.57612485e-01 - 10.41755503j,
29
+ 1.82126812e+01 + 0.j,
30
+ 1.06011014e+01 + 0.j,
31
+ 7.80732773e+00 + 0.j,
32
+ -7.65390898e-01 + 0.j,
33
+ 1.51971555e-15 + 0.j,
34
+ -1.51308713e-15 + 0.j])
35
+ a = arange(13 * 13, dtype=float64)
36
+ a = a.reshape((13, 13))
37
+ a = a % 17
38
+ va, ve = linalg.eig(a)
39
+ va.sort()
40
+ rva.sort()
41
+ assert_array_almost_equal(va, rva)
42
+
43
+ def test_eigh_build(self):
44
+ # Ticket 662.
45
+ rvals = [68.60568999, 89.57756725, 106.67185574]
46
+
47
+ cov = array([[77.70273908, 3.51489954, 15.64602427],
48
+ [ 3.51489954, 88.97013878, -1.07431931],
49
+ [15.64602427, -1.07431931, 98.18223512]])
50
+
51
+ vals, vecs = linalg.eigh(cov)
52
+ assert_array_almost_equal(vals, rvals)
53
+
54
+ def test_svd_build(self):
55
+ # Ticket 627.
56
+ a = array([[0., 1.], [1., 1.], [2., 1.], [3., 1.]])
57
+ m, n = a.shape
58
+ u, s, vh = linalg.svd(a)
59
+
60
+ b = dot(transpose(u[:, n:]), a)
61
+
62
+ assert_array_almost_equal(b, np.zeros((2, 2)))
63
+
64
+ def test_norm_vector_badarg(self):
65
+ # Regression for #786: Frobenius norm for vectors raises
66
+ # ValueError.
67
+ assert_raises(ValueError, linalg.norm, array([1., 2., 3.]), 'fro')
68
+
69
+ def test_lapack_endian(self):
70
+ # For bug #1482
71
+ a = array([[ 5.7998084, -2.1825367],
72
+ [-2.1825367, 9.85910595]], dtype='>f8')
73
+ b = array(a, dtype='<f8')
74
+
75
+ ap = linalg.cholesky(a)
76
+ bp = linalg.cholesky(b)
77
+ assert_array_equal(ap, bp)
78
+
79
+ def test_large_svd_32bit(self):
80
+ # See gh-4442, 64bit would require very large/slow matrices.
81
+ x = np.eye(1000, 66)
82
+ np.linalg.svd(x)
83
+
84
+ def test_svd_no_uv(self):
85
+ # gh-4733
86
+ for shape in (3, 4), (4, 4), (4, 3):
87
+ for t in float, complex:
88
+ a = np.ones(shape, dtype=t)
89
+ w = linalg.svd(a, compute_uv=False)
90
+ c = np.count_nonzero(np.absolute(w) > 0.5)
91
+ assert_equal(c, 1)
92
+ assert_equal(np.linalg.matrix_rank(a), 1)
93
+ assert_array_less(1, np.linalg.norm(a, ord=2))
94
+
95
+ w_svdvals = linalg.svdvals(a)
96
+ assert_array_almost_equal(w, w_svdvals)
97
+
98
+ def test_norm_object_array(self):
99
+ # gh-7575
100
+ testvector = np.array([np.array([0, 1]), 0, 0], dtype=object)
101
+
102
+ norm = linalg.norm(testvector)
103
+ assert_array_equal(norm, [0, 1])
104
+ assert_(norm.dtype == np.dtype('float64'))
105
+
106
+ norm = linalg.norm(testvector, ord=1)
107
+ assert_array_equal(norm, [0, 1])
108
+ assert_(norm.dtype != np.dtype('float64'))
109
+
110
+ norm = linalg.norm(testvector, ord=2)
111
+ assert_array_equal(norm, [0, 1])
112
+ assert_(norm.dtype == np.dtype('float64'))
113
+
114
+ assert_raises(ValueError, linalg.norm, testvector, ord='fro')
115
+ assert_raises(ValueError, linalg.norm, testvector, ord='nuc')
116
+ assert_raises(ValueError, linalg.norm, testvector, ord=np.inf)
117
+ assert_raises(ValueError, linalg.norm, testvector, ord=-np.inf)
118
+ assert_raises(ValueError, linalg.norm, testvector, ord=0)
119
+ assert_raises(ValueError, linalg.norm, testvector, ord=-1)
120
+ assert_raises(ValueError, linalg.norm, testvector, ord=-2)
121
+
122
+ testmatrix = np.array([[np.array([0, 1]), 0, 0],
123
+ [0, 0, 0]], dtype=object)
124
+
125
+ norm = linalg.norm(testmatrix)
126
+ assert_array_equal(norm, [0, 1])
127
+ assert_(norm.dtype == np.dtype('float64'))
128
+
129
+ norm = linalg.norm(testmatrix, ord='fro')
130
+ assert_array_equal(norm, [0, 1])
131
+ assert_(norm.dtype == np.dtype('float64'))
132
+
133
+ assert_raises(TypeError, linalg.norm, testmatrix, ord='nuc')
134
+ assert_raises(ValueError, linalg.norm, testmatrix, ord=np.inf)
135
+ assert_raises(ValueError, linalg.norm, testmatrix, ord=-np.inf)
136
+ assert_raises(ValueError, linalg.norm, testmatrix, ord=0)
137
+ assert_raises(ValueError, linalg.norm, testmatrix, ord=1)
138
+ assert_raises(ValueError, linalg.norm, testmatrix, ord=-1)
139
+ assert_raises(TypeError, linalg.norm, testmatrix, ord=2)
140
+ assert_raises(TypeError, linalg.norm, testmatrix, ord=-2)
141
+ assert_raises(ValueError, linalg.norm, testmatrix, ord=3)
142
+
143
+ def test_lstsq_complex_larger_rhs(self):
144
+ # gh-9891
145
+ size = 20
146
+ n_rhs = 70
147
+ G = np.random.randn(size, size) + 1j * np.random.randn(size, size)
148
+ u = np.random.randn(size, n_rhs) + 1j * np.random.randn(size, n_rhs)
149
+ b = G.dot(u)
150
+ # This should work without segmentation fault.
151
+ u_lstsq, res, rank, sv = linalg.lstsq(G, b, rcond=None)
152
+ # check results just in case
153
+ assert_array_almost_equal(u_lstsq, u)
154
+
155
+ @pytest.mark.parametrize("upper", [True, False])
156
+ def test_cholesky_empty_array(self, upper):
157
+ # gh-25840 - upper=True hung before.
158
+ res = np.linalg.cholesky(np.zeros((0, 0)), upper=upper)
159
+ assert res.size == 0
160
+
161
+ @pytest.mark.parametrize("rtol", [0.0, [0.0] * 4, np.zeros((4,))])
162
+ def test_matrix_rank_rtol_argument(self, rtol):
163
+ # gh-25877
164
+ x = np.zeros((4, 3, 2))
165
+ res = np.linalg.matrix_rank(x, rtol=rtol)
166
+ assert res.shape == (4,)
167
+
168
+ @pytest.mark.thread_unsafe(reason="test is already testing threads with openblas")
169
+ def test_openblas_threading(self):
170
+ # gh-27036
171
+ # Test whether matrix multiplication involving a large matrix always
172
+ # gives the same (correct) answer
173
+ x = np.arange(500000, dtype=np.float64)
174
+ src = np.vstack((x, -10 * x)).T
175
+ matrix = np.array([[0, 1], [1, 0]])
176
+ expected = np.vstack((-10 * x, x)).T # src @ matrix
177
+ for i in range(200):
178
+ result = src @ matrix
179
+ mismatches = (~np.isclose(result, expected)).sum()
180
+ if mismatches != 0:
181
+ assert False, ("unexpected result from matmul, "
182
+ "probably due to OpenBLAS threading issues")
@@ -0,0 +1,135 @@
1
+ .. -*- rest -*-
2
+
3
+ ==================================================
4
+ API changes in the new masked array implementation
5
+ ==================================================
6
+
7
+ Masked arrays are subclasses of ndarray
8
+ ---------------------------------------
9
+
10
+ Contrary to the original implementation, masked arrays are now regular
11
+ ndarrays::
12
+
13
+ >>> x = masked_array([1,2,3],mask=[0,0,1])
14
+ >>> print isinstance(x, numpy.ndarray)
15
+ True
16
+
17
+
18
+ ``_data`` returns a view of the masked array
19
+ --------------------------------------------
20
+
21
+ Masked arrays are composed of a ``_data`` part and a ``_mask``. Accessing the
22
+ ``_data`` part will return a regular ndarray or any of its subclass, depending
23
+ on the initial data::
24
+
25
+ >>> x = masked_array(numpy.matrix([[1,2],[3,4]]),mask=[[0,0],[0,1]])
26
+ >>> print x._data
27
+ [[1 2]
28
+ [3 4]]
29
+ >>> print type(x._data)
30
+ <class 'numpy.matrixlib.defmatrix.matrix'>
31
+
32
+
33
+ In practice, ``_data`` is implemented as a property, not as an attribute.
34
+ Therefore, you cannot access it directly, and some simple tests such as the
35
+ following one will fail::
36
+
37
+ >>>x._data is x._data
38
+ False
39
+
40
+
41
+ ``filled(x)`` can return a subclass of ndarray
42
+ ----------------------------------------------
43
+ The function ``filled(a)`` returns an array of the same type as ``a._data``::
44
+
45
+ >>> x = masked_array(numpy.matrix([[1,2],[3,4]]),mask=[[0,0],[0,1]])
46
+ >>> y = filled(x)
47
+ >>> print type(y)
48
+ <class 'numpy.matrixlib.defmatrix.matrix'>
49
+ >>> print y
50
+ matrix([[ 1, 2],
51
+ [ 3, 999999]])
52
+
53
+
54
+ ``put``, ``putmask`` behave like their ndarray counterparts
55
+ -----------------------------------------------------------
56
+
57
+ Previously, ``putmask`` was used like this::
58
+
59
+ mask = [False,True,True]
60
+ x = array([1,4,7],mask=mask)
61
+ putmask(x,mask,[3])
62
+
63
+ which translated to::
64
+
65
+ x[~mask] = [3]
66
+
67
+ (Note that a ``True``-value in a mask suppresses a value.)
68
+
69
+ In other words, the mask had the same length as ``x``, whereas
70
+ ``values`` had ``sum(~mask)`` elements.
71
+
72
+ Now, the behaviour is similar to that of ``ndarray.putmask``, where
73
+ the mask and the values are both the same length as ``x``, i.e.
74
+
75
+ ::
76
+
77
+ putmask(x,mask,[3,0,0])
78
+
79
+
80
+ ``fill_value`` is a property
81
+ ----------------------------
82
+
83
+ ``fill_value`` is no longer a method, but a property::
84
+
85
+ >>> print x.fill_value
86
+ 999999
87
+
88
+ ``cumsum`` and ``cumprod`` ignore missing values
89
+ ------------------------------------------------
90
+
91
+ Missing values are assumed to be the identity element, i.e. 0 for
92
+ ``cumsum`` and 1 for ``cumprod``::
93
+
94
+ >>> x = N.ma.array([1,2,3,4],mask=[False,True,False,False])
95
+ >>> print x
96
+ [1 -- 3 4]
97
+ >>> print x.cumsum()
98
+ [1 -- 4 8]
99
+ >> print x.cumprod()
100
+ [1 -- 3 12]
101
+
102
+ ``bool(x)`` raises a ValueError
103
+ -------------------------------
104
+
105
+ Masked arrays now behave like regular ``ndarrays``, in that they cannot be
106
+ converted to booleans:
107
+
108
+ ::
109
+
110
+ >>> x = N.ma.array([1,2,3])
111
+ >>> bool(x)
112
+ Traceback (most recent call last):
113
+ File "<stdin>", line 1, in <module>
114
+ ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()
115
+
116
+
117
+ ==================================
118
+ New features (non exhaustive list)
119
+ ==================================
120
+
121
+ ``mr_``
122
+ -------
123
+
124
+ ``mr_`` mimics the behavior of ``r_`` for masked arrays::
125
+
126
+ >>> np.ma.mr_[3,4,5]
127
+ masked_array(data = [3 4 5],
128
+ mask = False,
129
+ fill_value=999999)
130
+
131
+
132
+ ``anom``
133
+ --------
134
+
135
+ The ``anom`` method returns the deviations from the average (anomalies).
numpy/ma/LICENSE ADDED
@@ -0,0 +1,24 @@
1
+ * Copyright (c) 2006, University of Georgia and Pierre G.F. Gerard-Marchant
2
+ * All rights reserved.
3
+ * Redistribution and use in source and binary forms, with or without
4
+ * modification, are permitted provided that the following conditions are met:
5
+ *
6
+ * * Redistributions of source code must retain the above copyright
7
+ * notice, this list of conditions and the following disclaimer.
8
+ * * Redistributions in binary form must reproduce the above copyright
9
+ * notice, this list of conditions and the following disclaimer in the
10
+ * documentation and/or other materials provided with the distribution.
11
+ * * Neither the name of the University of Georgia nor the
12
+ * names of its contributors may be used to endorse or promote products
13
+ * derived from this software without specific prior written permission.
14
+ *
15
+ * THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND ANY
16
+ * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
17
+ * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
18
+ * DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE FOR ANY
19
+ * DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
20
+ * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
21
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
22
+ * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
23
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
24
+ * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
numpy/ma/README.rst ADDED
@@ -0,0 +1,236 @@
1
+ ==================================
2
+ A guide to masked arrays in NumPy
3
+ ==================================
4
+
5
+ .. Contents::
6
+
7
+ See http://www.scipy.org/scipy/numpy/wiki/MaskedArray (dead link)
8
+ for updates of this document.
9
+
10
+
11
+ History
12
+ -------
13
+
14
+ As a regular user of MaskedArray, I (Pierre G.F. Gerard-Marchant) became
15
+ increasingly frustrated with the subclassing of masked arrays (even if
16
+ I can only blame my inexperience). I needed to develop a class of arrays
17
+ that could store some additional information along with numerical values,
18
+ while keeping the possibility for missing data (picture storing a series
19
+ of dates along with measurements, what would later become the `TimeSeries
20
+ Scikit <http://projects.scipy.org/scipy/scikits/wiki/TimeSeries>`__
21
+ (dead link).
22
+
23
+ I started to implement such a class, but then quickly realized that
24
+ any additional information disappeared when processing these subarrays
25
+ (for example, adding a constant value to a subarray would erase its
26
+ dates). I ended up writing the equivalent of *numpy.core.ma* for my
27
+ particular class, ufuncs included. Everything went fine until I needed to
28
+ subclass my new class, when more problems showed up: some attributes of
29
+ the new subclass were lost during processing. I identified the culprit as
30
+ MaskedArray, which returns masked ndarrays when I expected masked
31
+ arrays of my class. I was preparing myself to rewrite *numpy.core.ma*
32
+ when I forced myself to learn how to subclass ndarrays. As I became more
33
+ familiar with the *__new__* and *__array_finalize__* methods,
34
+ I started to wonder why masked arrays were objects, and not ndarrays,
35
+ and whether it wouldn't be more convenient for subclassing if they did
36
+ behave like regular ndarrays.
37
+
38
+ The new *maskedarray* is what I eventually come up with. The
39
+ main differences with the initial *numpy.core.ma* package are
40
+ that MaskedArray is now a subclass of *ndarray* and that the
41
+ *_data* section can now be any subclass of *ndarray*. Apart from a
42
+ couple of issues listed below, the behavior of the new MaskedArray
43
+ class reproduces the old one. Initially the *maskedarray*
44
+ implementation was marginally slower than *numpy.ma* in some areas,
45
+ but work is underway to speed it up; the expectation is that it can be
46
+ made substantially faster than the present *numpy.ma*.
47
+
48
+
49
+ Note that if the subclass has some special methods and
50
+ attributes, they are not propagated to the masked version:
51
+ this would require a modification of the *__getattribute__*
52
+ method (first trying *ndarray.__getattribute__*, then trying
53
+ *self._data.__getattribute__* if an exception is raised in the first
54
+ place), which really slows things down.
55
+
56
+ Main differences
57
+ ----------------
58
+
59
+ * The *_data* part of the masked array can be any subclass of ndarray (but not recarray, cf below).
60
+ * *fill_value* is now a property, not a function.
61
+ * in the majority of cases, the mask is forced to *nomask* when no value is actually masked. A notable exception is when a masked array (with no masked values) has just been unpickled.
62
+ * I got rid of the *share_mask* flag, I never understood its purpose.
63
+ * *put*, *putmask* and *take* now mimic the ndarray methods, to avoid unpleasant surprises. Moreover, *put* and *putmask* both update the mask when needed. * if *a* is a masked array, *bool(a)* raises a *ValueError*, as it does with ndarrays.
64
+ * in the same way, the comparison of two masked arrays is a masked array, not a boolean
65
+ * *filled(a)* returns an array of the same subclass as *a._data*, and no test is performed on whether it is contiguous or not.
66
+ * the mask is always printed, even if it's *nomask*, which makes things easy (for me at least) to remember that a masked array is used.
67
+ * *cumsum* works as if the *_data* array was filled with 0. The mask is preserved, but not updated.
68
+ * *cumprod* works as if the *_data* array was filled with 1. The mask is preserved, but not updated.
69
+
70
+ New features
71
+ ------------
72
+
73
+ This list is non-exhaustive...
74
+
75
+ * the *mr_* function mimics *r_* for masked arrays.
76
+ * the *anom* method returns the anomalies (deviations from the average)
77
+
78
+ Using the new package with numpy.core.ma
79
+ ----------------------------------------
80
+
81
+ I tried to make sure that the new package can understand old masked
82
+ arrays. Unfortunately, there's no upward compatibility.
83
+
84
+ For example:
85
+
86
+ >>> import numpy.core.ma as old_ma
87
+ >>> import maskedarray as new_ma
88
+ >>> x = old_ma.array([1,2,3,4,5], mask=[0,0,1,0,0])
89
+ >>> x
90
+ array(data =
91
+ [ 1 2 999999 4 5],
92
+ mask =
93
+ [False False True False False],
94
+ fill_value=999999)
95
+ >>> y = new_ma.array([1,2,3,4,5], mask=[0,0,1,0,0])
96
+ >>> y
97
+ array(data = [1 2 -- 4 5],
98
+ mask = [False False True False False],
99
+ fill_value=999999)
100
+ >>> x==y
101
+ array(data =
102
+ [True True True True True],
103
+ mask =
104
+ [False False True False False],
105
+ fill_value=?)
106
+ >>> old_ma.getmask(x) == new_ma.getmask(x)
107
+ array([True, True, True, True, True])
108
+ >>> old_ma.getmask(y) == new_ma.getmask(y)
109
+ array([True, True, False, True, True])
110
+ >>> old_ma.getmask(y)
111
+ False
112
+
113
+
114
+ Using maskedarray with matplotlib
115
+ ---------------------------------
116
+
117
+ Starting with matplotlib 0.91.2, the masked array importing will work with
118
+ the maskedarray branch) as well as with earlier versions.
119
+
120
+ By default matplotlib still uses numpy.ma, but there is an rcParams setting
121
+ that you can use to select maskedarray instead. In the matplotlibrc file
122
+ you will find::
123
+
124
+ #maskedarray : False # True to use external maskedarray module
125
+ # instead of numpy.ma; this is a temporary #
126
+ setting for testing maskedarray.
127
+
128
+
129
+ Uncomment and set to True to select maskedarray everywhere.
130
+ Alternatively, you can test a script with maskedarray by using a
131
+ command-line option, e.g.::
132
+
133
+ python simple_plot.py --maskedarray
134
+
135
+
136
+ Masked records
137
+ --------------
138
+
139
+ Like *numpy.ma.core*, the *ndarray*-based implementation
140
+ of MaskedArray is limited when working with records: you can
141
+ mask any record of the array, but not a field in a record. If you
142
+ need this feature, you may want to give the *mrecords* package
143
+ a try (available in the *maskedarray* directory in the scipy
144
+ sandbox). This module defines a new class, *MaskedRecord*. An
145
+ instance of this class accepts a *recarray* as data, and uses two
146
+ masks: the *fieldmask* has as many entries as records in the array,
147
+ each entry with the same fields as a record, but of boolean types:
148
+ they indicate whether the field is masked or not; a record entry
149
+ is flagged as masked in the *mask* array if all the fields are
150
+ masked. A few examples in the file should give you an idea of what
151
+ can be done. Note that *mrecords* is still experimental...
152
+
153
+ Optimizing maskedarray
154
+ ----------------------
155
+
156
+ Should masked arrays be filled before processing or not?
157
+ --------------------------------------------------------
158
+
159
+ In the current implementation, most operations on masked arrays involve
160
+ the following steps:
161
+
162
+ * the input arrays are filled
163
+ * the operation is performed on the filled arrays
164
+ * the mask is set for the results, from the combination of the input masks and the mask corresponding to the domain of the operation.
165
+
166
+ For example, consider the division of two masked arrays::
167
+
168
+ import numpy
169
+ import maskedarray as ma
170
+ x = ma.array([1,2,3,4],mask=[1,0,0,0], dtype=numpy.float64)
171
+ y = ma.array([-1,0,1,2], mask=[0,0,0,1], dtype=numpy.float64)
172
+
173
+ The division of x by y is then computed as::
174
+
175
+ d1 = x.filled(0) # d1 = array([0., 2., 3., 4.])
176
+ d2 = y.filled(1) # array([-1., 0., 1., 1.])
177
+ m = ma.mask_or(ma.getmask(x), ma.getmask(y)) # m =
178
+ array([True,False,False,True])
179
+ dm = ma.divide.domain(d1,d2) # array([False, True, False, False])
180
+ result = (d1/d2).view(MaskedArray) # masked_array([-0. inf, 3., 4.])
181
+ result._mask = logical_or(m, dm)
182
+
183
+ Note that a division by zero takes place. To avoid it, we can consider
184
+ to fill the input arrays, taking the domain mask into account, so that::
185
+
186
+ d1 = x._data.copy() # d1 = array([1., 2., 3., 4.])
187
+ d2 = y._data.copy() # array([-1., 0., 1., 2.])
188
+ dm = ma.divide.domain(d1,d2) # array([False, True, False, False])
189
+ numpy.putmask(d2, dm, 1) # d2 = array([-1., 1., 1., 2.])
190
+ m = ma.mask_or(ma.getmask(x), ma.getmask(y)) # m =
191
+ array([True,False,False,True])
192
+ result = (d1/d2).view(MaskedArray) # masked_array([-1. 0., 3., 2.])
193
+ result._mask = logical_or(m, dm)
194
+
195
+ Note that the *.copy()* is required to avoid updating the inputs with
196
+ *putmask*. The *.filled()* method also involves a *.copy()*.
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+
198
+ A third possibility consists in avoid filling the arrays::
199
+
200
+ d1 = x._data # d1 = array([1., 2., 3., 4.])
201
+ d2 = y._data # array([-1., 0., 1., 2.])
202
+ dm = ma.divide.domain(d1,d2) # array([False, True, False, False])
203
+ m = ma.mask_or(ma.getmask(x), ma.getmask(y)) # m =
204
+ array([True,False,False,True])
205
+ result = (d1/d2).view(MaskedArray) # masked_array([-1. inf, 3., 2.])
206
+ result._mask = logical_or(m, dm)
207
+
208
+ Note that here again the division by zero takes place.
209
+
210
+ A quick benchmark gives the following results:
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+
212
+ * *numpy.ma.divide* : 2.69 ms per loop
213
+ * classical division : 2.21 ms per loop
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+ * division w/ prefilling : 2.34 ms per loop
215
+ * division w/o filling : 1.55 ms per loop
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+
217
+ So, is it worth filling the arrays beforehand ? Yes, if we are interested
218
+ in avoiding floating-point exceptions that may fill the result with infs
219
+ and nans. No, if we are only interested into speed...
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+
221
+
222
+ Thanks
223
+ ------
224
+
225
+ I'd like to thank Paul Dubois, Travis Oliphant and Sasha for the
226
+ original masked array package: without you, I would never have started
227
+ that (it might be argued that I shouldn't have anyway, but that's
228
+ another story...). I also wish to extend these thanks to Reggie Dugard
229
+ and Eric Firing for their suggestions and numerous improvements.
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+
231
+
232
+ Revision notes
233
+ --------------
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+
235
+ * 08/25/2007 : Creation of this page
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+ * 01/23/2007 : The package has been moved to the SciPy sandbox, and is regularly updated: please check out your SVN version!
numpy/ma/__init__.py ADDED
@@ -0,0 +1,53 @@
1
+ """
2
+ =============
3
+ Masked Arrays
4
+ =============
5
+
6
+ Arrays sometimes contain invalid or missing data. When doing operations
7
+ on such arrays, we wish to suppress invalid values, which is the purpose masked
8
+ arrays fulfill (an example of typical use is given below).
9
+
10
+ For example, examine the following array:
11
+
12
+ >>> x = np.array([2, 1, 3, np.nan, 5, 2, 3, np.nan])
13
+
14
+ When we try to calculate the mean of the data, the result is undetermined:
15
+
16
+ >>> np.mean(x)
17
+ nan
18
+
19
+ The mean is calculated using roughly ``np.sum(x)/len(x)``, but since
20
+ any number added to ``NaN`` [1]_ produces ``NaN``, this doesn't work. Enter
21
+ masked arrays:
22
+
23
+ >>> m = np.ma.masked_array(x, np.isnan(x))
24
+ >>> m
25
+ masked_array(data=[2.0, 1.0, 3.0, --, 5.0, 2.0, 3.0, --],
26
+ mask=[False, False, False, True, False, False, False, True],
27
+ fill_value=1e+20)
28
+
29
+ Here, we construct a masked array that suppress all ``NaN`` values. We
30
+ may now proceed to calculate the mean of the other values:
31
+
32
+ >>> np.mean(m)
33
+ 2.6666666666666665
34
+
35
+ .. [1] Not-a-Number, a floating point value that is the result of an
36
+ invalid operation.
37
+
38
+ .. moduleauthor:: Pierre Gerard-Marchant
39
+ .. moduleauthor:: Jarrod Millman
40
+
41
+ """
42
+ from . import core, extras
43
+ from .core import *
44
+ from .extras import *
45
+
46
+ __all__ = ['core', 'extras']
47
+ __all__ += core.__all__
48
+ __all__ += extras.__all__
49
+
50
+ from numpy._pytesttester import PytestTester
51
+
52
+ test = PytestTester(__name__)
53
+ del PytestTester