numpy 1.9.2__zip → 1.10.0__zip

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1593) hide show
  1. numpy-1.10.0.post2/INSTALL.txt +200 -0
  2. numpy-1.10.0.post2/LICENSE.txt +30 -0
  3. numpy-1.10.0.post2/MANIFEST.in +31 -0
  4. numpy-1.10.0.post2/PKG-INFO +47 -0
  5. numpy-1.10.0.post2/cnew.txt +117 -0
  6. numpy-1.10.0.post2/cold.txt +44 -0
  7. numpy-1.10.0.post2/committers.txt +160 -0
  8. numpy-1.10.0.post2/cpre.txt +283 -0
  9. numpy-1.10.0.post2/crel.txt +161 -0
  10. numpy-1.10.0.post2/doc/release/1.10.0-notes.rst +439 -0
  11. numpy-1.10.0.post2/doc/scipy-sphinx-theme/.git +1 -0
  12. numpy-1.10.0.post2/doc/source/conf.py +331 -0
  13. numpy-1.10.0.post2/doc/source/dev/development_environment.rst +211 -0
  14. numpy-1.10.0.post2/doc/source/dev/gitwash/development_workflow.rst +534 -0
  15. numpy-1.10.0.post2/doc/source/dev/gitwash/git_links.inc +95 -0
  16. numpy-1.10.0.post2/doc/source/dev/gitwash/index.rst +14 -0
  17. numpy-1.10.0.post2/doc/source/dev/index.rst +11 -0
  18. numpy-1.10.0.post2/doc/source/reference/arrays.classes.rst +490 -0
  19. numpy-1.10.0.post2/doc/source/reference/arrays.dtypes.rst +536 -0
  20. numpy-1.10.0.post2/doc/source/reference/arrays.indexing.rst +549 -0
  21. numpy-1.10.0.post2/doc/source/reference/arrays.interface.rst +337 -0
  22. numpy-1.10.0.post2/doc/source/reference/arrays.ndarray.rst +622 -0
  23. numpy-1.10.0.post2/doc/source/reference/arrays.scalars.rst +291 -0
  24. numpy-1.10.0.post2/doc/source/reference/c-api.array.rst +3393 -0
  25. numpy-1.10.0.post2/doc/source/reference/c-api.config.rst +103 -0
  26. numpy-1.10.0.post2/doc/source/reference/c-api.coremath.rst +420 -0
  27. numpy-1.10.0.post2/doc/source/reference/c-api.dtype.rst +376 -0
  28. numpy-1.10.0.post2/doc/source/reference/c-api.generalized-ufuncs.rst +191 -0
  29. numpy-1.10.0.post2/doc/source/reference/c-api.iterator.rst +1300 -0
  30. numpy-1.10.0.post2/doc/source/reference/c-api.types-and-structures.rst +1240 -0
  31. numpy-1.10.0.post2/doc/source/reference/c-api.ufunc.rst +413 -0
  32. numpy-1.10.0.post2/doc/source/reference/index.rst +43 -0
  33. numpy-1.10.0.post2/doc/source/reference/internals.code-explanations.rst +615 -0
  34. numpy-1.10.0.post2/doc/source/reference/routines.array-manipulation.rst +115 -0
  35. numpy-1.10.0.post2/doc/source/reference/routines.io.rst +78 -0
  36. numpy-1.10.0.post2/doc/source/reference/routines.linalg.rst +91 -0
  37. numpy-1.10.0.post2/doc/source/reference/routines.ma.rst +407 -0
  38. numpy-1.10.0.post2/doc/source/reference/routines.sort.rst +41 -0
  39. numpy-1.10.0.post2/doc/source/reference/routines.statistics.rst +57 -0
  40. numpy-1.10.0.post2/doc/source/reference/swig.interface-file.rst +1066 -0
  41. numpy-1.10.0.post2/doc/source/reference/swig.testing.rst +167 -0
  42. numpy-1.10.0.post2/doc/source/reference/ufuncs.rst +666 -0
  43. numpy-1.10.0.post2/doc/source/release.rst +20 -0
  44. numpy-1.10.0.post2/doc/source/user/basics.io.genfromtxt.rst +531 -0
  45. numpy-1.10.0.post2/doc/source/user/basics.rec.rst +7 -0
  46. numpy-1.10.0.post2/doc/source/user/c-info.beyond-basics.rst +560 -0
  47. numpy-1.10.0.post2/doc/source/user/c-info.how-to-extend.rst +642 -0
  48. numpy-1.10.0.post2/doc/source/user/c-info.python-as-glue.rst +1177 -0
  49. numpy-1.10.0.post2/doc/source/user/c-info.ufunc-tutorial.rst +1211 -0
  50. numpy-1.10.0.post2/doc/source/user/install.rst +194 -0
  51. numpy-1.10.0.post2/doc/sphinxext/.git +1 -0
  52. numpy-1.10.0.post2/numpy/__init__.py +227 -0
  53. numpy-1.10.0.post2/numpy/_build_utils/README +8 -0
  54. numpy-1.10.0.post2/numpy/_build_utils/apple_accelerate.py +21 -0
  55. numpy-1.10.0.post2/numpy/_build_utils/common.py +138 -0
  56. numpy-1.10.0.post2/numpy/_build_utils/src/apple_sgemv_fix.c +227 -0
  57. numpy-1.10.0.post2/numpy/_build_utils/waf.py +531 -0
  58. numpy-1.10.0.post2/numpy/_import_tools.py +353 -0
  59. numpy-1.10.0.post2/numpy/add_newdocs.py +7611 -0
  60. numpy-1.10.0.post2/numpy/compat/_inspect.py +194 -0
  61. numpy-1.10.0.post2/numpy/compat/py3k.py +88 -0
  62. numpy-1.10.0.post2/numpy/compat/setup.py +12 -0
  63. numpy-1.10.0.post2/numpy/core/__init__.py +89 -0
  64. numpy-1.10.0.post2/numpy/core/_internal.py +761 -0
  65. numpy-1.10.0.post2/numpy/core/_methods.py +133 -0
  66. numpy-1.10.0.post2/numpy/core/arrayprint.py +760 -0
  67. numpy-1.10.0.post2/numpy/core/code_generators/cversions.txt +34 -0
  68. numpy-1.10.0.post2/numpy/core/code_generators/generate_ufunc_api.py +219 -0
  69. numpy-1.10.0.post2/numpy/core/code_generators/generate_umath.py +1017 -0
  70. numpy-1.10.0.post2/numpy/core/code_generators/numpy_api.py +415 -0
  71. numpy-1.10.0.post2/numpy/core/code_generators/ufunc_docstrings.py +3442 -0
  72. numpy-1.10.0.post2/numpy/core/defchararray.py +2689 -0
  73. numpy-1.10.0.post2/numpy/core/fromnumeric.py +3089 -0
  74. numpy-1.10.0.post2/numpy/core/function_base.py +203 -0
  75. numpy-1.10.0.post2/numpy/core/getlimits.py +308 -0
  76. numpy-1.10.0.post2/numpy/core/include/numpy/ndarrayobject.h +246 -0
  77. numpy-1.10.0.post2/numpy/core/include/numpy/ndarraytypes.h +1797 -0
  78. numpy-1.10.0.post2/numpy/core/include/numpy/npy_3kcompat.h +448 -0
  79. numpy-1.10.0.post2/numpy/core/include/numpy/npy_common.h +1051 -0
  80. numpy-1.10.0.post2/numpy/core/include/numpy/npy_cpu.h +92 -0
  81. numpy-1.10.0.post2/numpy/core/include/numpy/npy_endian.h +61 -0
  82. numpy-1.10.0.post2/numpy/core/include/numpy/npy_math.h +525 -0
  83. numpy-1.10.0.post2/numpy/core/include/numpy/numpyconfig.h +36 -0
  84. numpy-1.10.0.post2/numpy/core/machar.py +342 -0
  85. numpy-1.10.0.post2/numpy/core/memmap.py +311 -0
  86. numpy-1.10.0.post2/numpy/core/numeric.py +2893 -0
  87. numpy-1.10.0.post2/numpy/core/numerictypes.py +1036 -0
  88. numpy-1.10.0.post2/numpy/core/records.py +846 -0
  89. numpy-1.10.0.post2/numpy/core/setup.py +983 -0
  90. numpy-1.10.0.post2/numpy/core/setup_common.py +352 -0
  91. numpy-1.10.0.post2/numpy/core/shape_base.py +350 -0
  92. numpy-1.10.0.post2/numpy/core/src/multiarray/alloc.c +244 -0
  93. numpy-1.10.0.post2/numpy/core/src/multiarray/arrayobject.c +1858 -0
  94. numpy-1.10.0.post2/numpy/core/src/multiarray/arraytypes.c.src +4738 -0
  95. numpy-1.10.0.post2/numpy/core/src/multiarray/arraytypes.h +37 -0
  96. numpy-1.10.0.post2/numpy/core/src/multiarray/buffer.c +981 -0
  97. numpy-1.10.0.post2/numpy/core/src/multiarray/calculation.c +1224 -0
  98. numpy-1.10.0.post2/numpy/core/src/multiarray/cblasfuncs.c +812 -0
  99. numpy-1.10.0.post2/numpy/core/src/multiarray/cblasfuncs.h +10 -0
  100. numpy-1.10.0.post2/numpy/core/src/multiarray/common.c +911 -0
  101. numpy-1.10.0.post2/numpy/core/src/multiarray/common.h +250 -0
  102. numpy-1.10.0.post2/numpy/core/src/multiarray/compiled_base.c +1664 -0
  103. numpy-1.10.0.post2/numpy/core/src/multiarray/compiled_base.h +24 -0
  104. numpy-1.10.0.post2/numpy/core/src/multiarray/conversion_utils.c +1217 -0
  105. numpy-1.10.0.post2/numpy/core/src/multiarray/convert.c +590 -0
  106. numpy-1.10.0.post2/numpy/core/src/multiarray/convert_datatype.c +2155 -0
  107. numpy-1.10.0.post2/numpy/core/src/multiarray/ctors.c +3838 -0
  108. numpy-1.10.0.post2/numpy/core/src/multiarray/datetime.c +3821 -0
  109. numpy-1.10.0.post2/numpy/core/src/multiarray/datetime_busday.c +1322 -0
  110. numpy-1.10.0.post2/numpy/core/src/multiarray/datetime_busdaycal.c +552 -0
  111. numpy-1.10.0.post2/numpy/core/src/multiarray/datetime_strings.c +1772 -0
  112. numpy-1.10.0.post2/numpy/core/src/multiarray/descriptor.c +3719 -0
  113. numpy-1.10.0.post2/numpy/core/src/multiarray/dtype_transfer.c +4239 -0
  114. numpy-1.10.0.post2/numpy/core/src/multiarray/einsum.c.src +3005 -0
  115. numpy-1.10.0.post2/numpy/core/src/multiarray/getset.c +986 -0
  116. numpy-1.10.0.post2/numpy/core/src/multiarray/hashdescr.c +318 -0
  117. numpy-1.10.0.post2/numpy/core/src/multiarray/item_selection.c +2413 -0
  118. numpy-1.10.0.post2/numpy/core/src/multiarray/iterators.c +2192 -0
  119. numpy-1.10.0.post2/numpy/core/src/multiarray/lowlevel_strided_loops.c.src +1769 -0
  120. numpy-1.10.0.post2/numpy/core/src/multiarray/mapping.c +3380 -0
  121. numpy-1.10.0.post2/numpy/core/src/multiarray/mapping.h +77 -0
  122. numpy-1.10.0.post2/numpy/core/src/multiarray/methods.c +2514 -0
  123. numpy-1.10.0.post2/numpy/core/src/multiarray/multiarray_tests.c.src +1035 -0
  124. numpy-1.10.0.post2/numpy/core/src/multiarray/multiarraymodule.c +4628 -0
  125. numpy-1.10.0.post2/numpy/core/src/multiarray/multiarraymodule.h +15 -0
  126. numpy-1.10.0.post2/numpy/core/src/multiarray/nditer_api.c +2809 -0
  127. numpy-1.10.0.post2/numpy/core/src/multiarray/nditer_constr.c +3160 -0
  128. numpy-1.10.0.post2/numpy/core/src/multiarray/nditer_pywrap.c +2499 -0
  129. numpy-1.10.0.post2/numpy/core/src/multiarray/number.c +1106 -0
  130. numpy-1.10.0.post2/numpy/core/src/multiarray/number.h +77 -0
  131. numpy-1.10.0.post2/numpy/core/src/multiarray/numpymemoryview.c +308 -0
  132. numpy-1.10.0.post2/numpy/core/src/multiarray/numpyos.c +683 -0
  133. numpy-1.10.0.post2/numpy/core/src/multiarray/scalarapi.c +870 -0
  134. numpy-1.10.0.post2/numpy/core/src/multiarray/scalartypes.c.src +4343 -0
  135. numpy-1.10.0.post2/numpy/core/src/multiarray/scalartypes.h +55 -0
  136. numpy-1.10.0.post2/numpy/core/src/multiarray/shape.c +1131 -0
  137. numpy-1.10.0.post2/numpy/core/src/multiarray/ucsnarrow.c +174 -0
  138. numpy-1.10.0.post2/numpy/core/src/multiarray/vdot.c +180 -0
  139. numpy-1.10.0.post2/numpy/core/src/multiarray/vdot.h +18 -0
  140. numpy-1.10.0.post2/numpy/core/src/npymath/ieee754.c.src +808 -0
  141. numpy-1.10.0.post2/numpy/core/src/npymath/npy_math.c.src +597 -0
  142. numpy-1.10.0.post2/numpy/core/src/npymath/npy_math_complex.c.src +1788 -0
  143. numpy-1.10.0.post2/numpy/core/src/npymath/npy_math_private.h +544 -0
  144. numpy-1.10.0.post2/numpy/core/src/npysort/heapsort.c.src +402 -0
  145. numpy-1.10.0.post2/numpy/core/src/npysort/mergesort.c.src +488 -0
  146. numpy-1.10.0.post2/numpy/core/src/npysort/npysort_common.h +360 -0
  147. numpy-1.10.0.post2/numpy/core/src/npysort/quicksort.c.src +523 -0
  148. numpy-1.10.0.post2/numpy/core/src/npysort/selection.c.src +426 -0
  149. numpy-1.10.0.post2/numpy/core/src/private/npy_cblas.h +584 -0
  150. numpy-1.10.0.post2/numpy/core/src/private/npy_config.h +101 -0
  151. numpy-1.10.0.post2/numpy/core/src/private/npy_import.h +32 -0
  152. numpy-1.10.0.post2/numpy/core/src/private/npy_partition.h.src +122 -0
  153. numpy-1.10.0.post2/numpy/core/src/private/npy_sort.h +196 -0
  154. numpy-1.10.0.post2/numpy/core/src/private/templ_common.h.src +43 -0
  155. numpy-1.10.0.post2/numpy/core/src/private/ufunc_override.h +397 -0
  156. numpy-1.10.0.post2/numpy/core/src/umath/funcs.inc.src +356 -0
  157. numpy-1.10.0.post2/numpy/core/src/umath/loops.c.src +2675 -0
  158. numpy-1.10.0.post2/numpy/core/src/umath/loops.h.src +497 -0
  159. numpy-1.10.0.post2/numpy/core/src/umath/operand_flag_tests.c.src +105 -0
  160. numpy-1.10.0.post2/numpy/core/src/umath/scalarmath.c.src +1738 -0
  161. numpy-1.10.0.post2/numpy/core/src/umath/simd.inc.src +903 -0
  162. numpy-1.10.0.post2/numpy/core/src/umath/test_rational.c.src +1404 -0
  163. numpy-1.10.0.post2/numpy/core/src/umath/ufunc_object.c +5703 -0
  164. numpy-1.10.0.post2/numpy/core/src/umath/ufunc_type_resolution.c +2159 -0
  165. numpy-1.10.0.post2/numpy/core/src/umath/umath_tests.c.src +392 -0
  166. numpy-1.10.0.post2/numpy/core/src/umath/umathmodule.c +443 -0
  167. numpy-1.10.0.post2/numpy/core/tests/test_abc.py +47 -0
  168. numpy-1.10.0.post2/numpy/core/tests/test_api.py +515 -0
  169. numpy-1.10.0.post2/numpy/core/tests/test_arrayprint.py +171 -0
  170. numpy-1.10.0.post2/numpy/core/tests/test_datetime.py +1820 -0
  171. numpy-1.10.0.post2/numpy/core/tests/test_defchararray.py +703 -0
  172. numpy-1.10.0.post2/numpy/core/tests/test_deprecations.py +619 -0
  173. numpy-1.10.0.post2/numpy/core/tests/test_dtype.py +578 -0
  174. numpy-1.10.0.post2/numpy/core/tests/test_einsum.py +627 -0
  175. numpy-1.10.0.post2/numpy/core/tests/test_errstate.py +52 -0
  176. numpy-1.10.0.post2/numpy/core/tests/test_function_base.py +142 -0
  177. numpy-1.10.0.post2/numpy/core/tests/test_getlimits.py +77 -0
  178. numpy-1.10.0.post2/numpy/core/tests/test_half.py +436 -0
  179. numpy-1.10.0.post2/numpy/core/tests/test_indexerrors.py +126 -0
  180. numpy-1.10.0.post2/numpy/core/tests/test_indexing.py +1047 -0
  181. numpy-1.10.0.post2/numpy/core/tests/test_item_selection.py +73 -0
  182. numpy-1.10.0.post2/numpy/core/tests/test_machar.py +29 -0
  183. numpy-1.10.0.post2/numpy/core/tests/test_memmap.py +130 -0
  184. numpy-1.10.0.post2/numpy/core/tests/test_multiarray.py +5924 -0
  185. numpy-1.10.0.post2/numpy/core/tests/test_multiarray_assignment.py +84 -0
  186. numpy-1.10.0.post2/numpy/core/tests/test_nditer.py +2638 -0
  187. numpy-1.10.0.post2/numpy/core/tests/test_numeric.py +2204 -0
  188. numpy-1.10.0.post2/numpy/core/tests/test_numerictypes.py +382 -0
  189. numpy-1.10.0.post2/numpy/core/tests/test_print.py +248 -0
  190. numpy-1.10.0.post2/numpy/core/tests/test_records.py +299 -0
  191. numpy-1.10.0.post2/numpy/core/tests/test_regression.py +2177 -0
  192. numpy-1.10.0.post2/numpy/core/tests/test_scalarinherit.py +41 -0
  193. numpy-1.10.0.post2/numpy/core/tests/test_scalarmath.py +316 -0
  194. numpy-1.10.0.post2/numpy/core/tests/test_shape_base.py +319 -0
  195. numpy-1.10.0.post2/numpy/core/tests/test_ufunc.py +1227 -0
  196. numpy-1.10.0.post2/numpy/core/tests/test_umath.py +1933 -0
  197. numpy-1.10.0.post2/numpy/core/tests/test_umath_complex.py +538 -0
  198. numpy-1.10.0.post2/numpy/core/tests/test_unicode.py +360 -0
  199. numpy-1.10.0.post2/numpy/distutils/__init__.py +23 -0
  200. numpy-1.10.0.post2/numpy/distutils/ccompiler.py +690 -0
  201. numpy-1.10.0.post2/numpy/distutils/command/autodist.py +94 -0
  202. numpy-1.10.0.post2/numpy/distutils/command/build.py +47 -0
  203. numpy-1.10.0.post2/numpy/distutils/command/build_clib.py +295 -0
  204. numpy-1.10.0.post2/numpy/distutils/command/build_ext.py +522 -0
  205. numpy-1.10.0.post2/numpy/distutils/command/config.py +437 -0
  206. numpy-1.10.0.post2/numpy/distutils/exec_command.py +651 -0
  207. numpy-1.10.0.post2/numpy/distutils/fcompiler/compaq.py +128 -0
  208. numpy-1.10.0.post2/numpy/distutils/fcompiler/gnu.py +403 -0
  209. numpy-1.10.0.post2/numpy/distutils/fcompiler/intel.py +217 -0
  210. numpy-1.10.0.post2/numpy/distutils/fcompiler/pg.py +63 -0
  211. numpy-1.10.0.post2/numpy/distutils/fcompiler/sun.py +55 -0
  212. numpy-1.10.0.post2/numpy/distutils/intelccompiler.py +95 -0
  213. numpy-1.10.0.post2/numpy/distutils/lib2def.py +116 -0
  214. numpy-1.10.0.post2/numpy/distutils/mingw32ccompiler.py +599 -0
  215. numpy-1.10.0.post2/numpy/distutils/misc_util.py +2306 -0
  216. numpy-1.10.0.post2/numpy/distutils/msvc9compiler.py +23 -0
  217. numpy-1.10.0.post2/numpy/distutils/msvccompiler.py +17 -0
  218. numpy-1.10.0.post2/numpy/distutils/npy_pkg_config.py +451 -0
  219. numpy-1.10.0.post2/numpy/distutils/system_info.py +2397 -0
  220. numpy-1.10.0.post2/numpy/distutils/tests/f2py_ext/tests/test_fib2.py +12 -0
  221. numpy-1.10.0.post2/numpy/distutils/tests/f2py_f90_ext/tests/test_foo.py +11 -0
  222. numpy-1.10.0.post2/numpy/distutils/tests/gen_ext/tests/test_fib3.py +11 -0
  223. numpy-1.10.0.post2/numpy/distutils/tests/pyrex_ext/tests/test_primes.py +13 -0
  224. numpy-1.10.0.post2/numpy/distutils/tests/swig_ext/__init__.py +1 -0
  225. numpy-1.10.0.post2/numpy/distutils/tests/swig_ext/tests/test_example.py +17 -0
  226. numpy-1.10.0.post2/numpy/distutils/tests/swig_ext/tests/test_example2.py +15 -0
  227. numpy-1.10.0.post2/numpy/distutils/tests/test_fcompiler_gnu.py +60 -0
  228. numpy-1.10.0.post2/numpy/distutils/tests/test_fcompiler_intel.py +36 -0
  229. numpy-1.10.0.post2/numpy/distutils/tests/test_misc_util.py +79 -0
  230. numpy-1.10.0.post2/numpy/distutils/tests/test_npy_pkg_config.py +102 -0
  231. numpy-1.10.0.post2/numpy/distutils/tests/test_system_info.py +209 -0
  232. numpy-1.10.0.post2/numpy/distutils/unixccompiler.py +125 -0
  233. numpy-1.10.0.post2/numpy/doc/byteswapping.py +156 -0
  234. numpy-1.10.0.post2/numpy/doc/creation.py +144 -0
  235. numpy-1.10.0.post2/numpy/doc/glossary.py +423 -0
  236. numpy-1.10.0.post2/numpy/doc/indexing.py +439 -0
  237. numpy-1.10.0.post2/numpy/doc/structured_arrays.py +290 -0
  238. numpy-1.10.0.post2/numpy/f2py/__init__.py +49 -0
  239. numpy-1.10.0.post2/numpy/f2py/__main__.py +25 -0
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  1558. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/info.py +0 -0
  1559. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/Python.pxi +0 -0
  1560. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/distributions.h +0 -0
  1561. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/generate_mtrand_c.py +0 -0
  1562. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/initarray.c +0 -0
  1563. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/initarray.h +0 -0
  1564. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/mtrand_py_helper.h +0 -0
  1565. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/numpy.pxd +0 -0
  1566. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/randomkit.c +0 -0
  1567. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/random/mtrand/randomkit.h +0 -0
  1568. {numpy-1.9.2 → numpy-1.10.0.post2}/numpy/testing/tests/test_doctesting.py +0 -0
  1569. {numpy-1.9.2 → numpy-1.10.0.post2}/setupegg.py +0 -0
  1570. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/Makefile +0 -0
  1571. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/pyfragments.swg +0 -0
  1572. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Array1.cxx +0 -0
  1573. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Array1.h +0 -0
  1574. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Array2.cxx +0 -0
  1575. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Array2.h +0 -0
  1576. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Farray.cxx +0 -0
  1577. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Farray.h +0 -0
  1578. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Farray.i +0 -0
  1579. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Fortran.cxx +0 -0
  1580. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Fortran.h +0 -0
  1581. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Fortran.i +0 -0
  1582. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Matrix.cxx +0 -0
  1583. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Matrix.h +0 -0
  1584. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Matrix.i +0 -0
  1585. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/SuperTensor.cxx +0 -0
  1586. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/SuperTensor.h +0 -0
  1587. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/SuperTensor.i +0 -0
  1588. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Tensor.cxx +0 -0
  1589. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Tensor.h +0 -0
  1590. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Tensor.i +0 -0
  1591. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Vector.cxx +0 -0
  1592. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Vector.h +0 -0
  1593. {numpy-1.9.2 → numpy-1.10.0.post2}/tools/swig/test/Vector.i +0 -0
@@ -1,3706 +0,0 @@
1
- # pylint: disable-msg=W0401,W0511,W0611,W0612,W0614,R0201,E1102
2
- """Tests suite for MaskedArray & subclassing.
3
-
4
- :author: Pierre Gerard-Marchant
5
- :contact: pierregm_at_uga_dot_edu
6
- """
7
- from __future__ import division, absolute_import, print_function
8
-
9
- __author__ = "Pierre GF Gerard-Marchant"
10
-
11
- import warnings
12
- import sys
13
- import pickle
14
- from functools import reduce
15
-
16
- from nose.tools import assert_raises
17
-
18
- import numpy as np
19
- import numpy.ma.core
20
- import numpy.core.fromnumeric as fromnumeric
21
- from numpy import ndarray
22
- from numpy.ma.testutils import *
23
- from numpy.ma.core import *
24
- from numpy.compat import asbytes, asbytes_nested
25
-
26
- pi = np.pi
27
-
28
-
29
- #..............................................................................
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- class TestMaskedArray(TestCase):
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- # Base test class for MaskedArrays.
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-
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- def setUp(self):
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- # Base data definition.
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- x = np.array([1., 1., 1., -2., pi/2.0, 4., 5., -10., 10., 1., 2., 3.])
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- y = np.array([5., 0., 3., 2., -1., -4., 0., -10., 10., 1., 0., 3.])
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- a10 = 10.
38
- m1 = [1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0]
39
- m2 = [0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 1]
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- xm = masked_array(x, mask=m1)
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- ym = masked_array(y, mask=m2)
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- z = np.array([-.5, 0., .5, .8])
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- zm = masked_array(z, mask=[0, 1, 0, 0])
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- xf = np.where(m1, 1e+20, x)
45
- xm.set_fill_value(1e+20)
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- self.d = (x, y, a10, m1, m2, xm, ym, z, zm, xf)
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-
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- def test_basicattributes(self):
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- # Tests some basic array attributes.
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- a = array([1, 3, 2])
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- b = array([1, 3, 2], mask=[1, 0, 1])
52
- assert_equal(a.ndim, 1)
53
- assert_equal(b.ndim, 1)
54
- assert_equal(a.size, 3)
55
- assert_equal(b.size, 3)
56
- assert_equal(a.shape, (3,))
57
- assert_equal(b.shape, (3,))
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-
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- def test_basic0d(self):
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- # Checks masking a scalar
61
- x = masked_array(0)
62
- assert_equal(str(x), '0')
63
- x = masked_array(0, mask=True)
64
- assert_equal(str(x), str(masked_print_option))
65
- x = masked_array(0, mask=False)
66
- assert_equal(str(x), '0')
67
- x = array(0, mask=1)
68
- self.assertTrue(x.filled().dtype is x._data.dtype)
69
-
70
- def test_basic1d(self):
71
- # Test of basic array creation and properties in 1 dimension.
72
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
73
- self.assertTrue(not isMaskedArray(x))
74
- self.assertTrue(isMaskedArray(xm))
75
- self.assertTrue((xm - ym).filled(0).any())
76
- fail_if_equal(xm.mask.astype(int), ym.mask.astype(int))
77
- s = x.shape
78
- assert_equal(np.shape(xm), s)
79
- assert_equal(xm.shape, s)
80
- assert_equal(xm.dtype, x.dtype)
81
- assert_equal(zm.dtype, z.dtype)
82
- assert_equal(xm.size, reduce(lambda x, y:x * y, s))
83
- assert_equal(count(xm), len(m1) - reduce(lambda x, y:x + y, m1))
84
- assert_array_equal(xm, xf)
85
- assert_array_equal(filled(xm, 1.e20), xf)
86
- assert_array_equal(x, xm)
87
-
88
- def test_basic2d(self):
89
- # Test of basic array creation and properties in 2 dimensions.
90
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
91
- for s in [(4, 3), (6, 2)]:
92
- x.shape = s
93
- y.shape = s
94
- xm.shape = s
95
- ym.shape = s
96
- xf.shape = s
97
- #
98
- self.assertTrue(not isMaskedArray(x))
99
- self.assertTrue(isMaskedArray(xm))
100
- assert_equal(shape(xm), s)
101
- assert_equal(xm.shape, s)
102
- assert_equal(xm.size, reduce(lambda x, y:x * y, s))
103
- assert_equal(count(xm), len(m1) - reduce(lambda x, y:x + y, m1))
104
- assert_equal(xm, xf)
105
- assert_equal(filled(xm, 1.e20), xf)
106
- assert_equal(x, xm)
107
-
108
- def test_concatenate_basic(self):
109
- # Tests concatenations.
110
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
111
- # basic concatenation
112
- assert_equal(np.concatenate((x, y)), concatenate((xm, ym)))
113
- assert_equal(np.concatenate((x, y)), concatenate((x, y)))
114
- assert_equal(np.concatenate((x, y)), concatenate((xm, y)))
115
- assert_equal(np.concatenate((x, y, x)), concatenate((x, ym, x)))
116
-
117
- def test_concatenate_alongaxis(self):
118
- # Tests concatenations.
119
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
120
- # Concatenation along an axis
121
- s = (3, 4)
122
- x.shape = y.shape = xm.shape = ym.shape = s
123
- assert_equal(xm.mask, np.reshape(m1, s))
124
- assert_equal(ym.mask, np.reshape(m2, s))
125
- xmym = concatenate((xm, ym), 1)
126
- assert_equal(np.concatenate((x, y), 1), xmym)
127
- assert_equal(np.concatenate((xm.mask, ym.mask), 1), xmym._mask)
128
- #
129
- x = zeros(2)
130
- y = array(ones(2), mask=[False, True])
131
- z = concatenate((x, y))
132
- assert_array_equal(z, [0, 0, 1, 1])
133
- assert_array_equal(z.mask, [False, False, False, True])
134
- z = concatenate((y, x))
135
- assert_array_equal(z, [1, 1, 0, 0])
136
- assert_array_equal(z.mask, [False, True, False, False])
137
-
138
- def test_concatenate_flexible(self):
139
- # Tests the concatenation on flexible arrays.
140
- data = masked_array(list(zip(np.random.rand(10),
141
- np.arange(10))),
142
- dtype=[('a', float), ('b', int)])
143
- #
144
- test = concatenate([data[:5], data[5:]])
145
- assert_equal_records(test, data)
146
-
147
- def test_creation_ndmin(self):
148
- # Check the use of ndmin
149
- x = array([1, 2, 3], mask=[1, 0, 0], ndmin=2)
150
- assert_equal(x.shape, (1, 3))
151
- assert_equal(x._data, [[1, 2, 3]])
152
- assert_equal(x._mask, [[1, 0, 0]])
153
-
154
- def test_creation_ndmin_from_maskedarray(self):
155
- # Make sure we're not losing the original mask w/ ndmin
156
- x = array([1, 2, 3])
157
- x[-1] = masked
158
- xx = array(x, ndmin=2, dtype=float)
159
- assert_equal(x.shape, x._mask.shape)
160
- assert_equal(xx.shape, xx._mask.shape)
161
-
162
- def test_creation_maskcreation(self):
163
- # Tests how masks are initialized at the creation of Maskedarrays.
164
- data = arange(24, dtype=float)
165
- data[[3, 6, 15]] = masked
166
- dma_1 = MaskedArray(data)
167
- assert_equal(dma_1.mask, data.mask)
168
- dma_2 = MaskedArray(dma_1)
169
- assert_equal(dma_2.mask, dma_1.mask)
170
- dma_3 = MaskedArray(dma_1, mask=[1, 0, 0, 0] * 6)
171
- fail_if_equal(dma_3.mask, dma_1.mask)
172
-
173
- def test_creation_with_list_of_maskedarrays(self):
174
- # Tests creaating a masked array from alist of masked arrays.
175
- x = array(np.arange(5), mask=[1, 0, 0, 0, 0])
176
- data = array((x, x[::-1]))
177
- assert_equal(data, [[0, 1, 2, 3, 4], [4, 3, 2, 1, 0]])
178
- assert_equal(data._mask, [[1, 0, 0, 0, 0], [0, 0, 0, 0, 1]])
179
- #
180
- x.mask = nomask
181
- data = array((x, x[::-1]))
182
- assert_equal(data, [[0, 1, 2, 3, 4], [4, 3, 2, 1, 0]])
183
- self.assertTrue(data.mask is nomask)
184
-
185
- def test_asarray(self):
186
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
187
- xm.fill_value = -9999
188
- xm._hardmask = True
189
- xmm = asarray(xm)
190
- assert_equal(xmm._data, xm._data)
191
- assert_equal(xmm._mask, xm._mask)
192
- assert_equal(xmm.fill_value, xm.fill_value)
193
- assert_equal(xmm._hardmask, xm._hardmask)
194
-
195
- def test_fix_invalid(self):
196
- # Checks fix_invalid.
197
- with np.errstate(invalid='ignore'):
198
- data = masked_array([np.nan, 0., 1.], mask=[0, 0, 1])
199
- data_fixed = fix_invalid(data)
200
- assert_equal(data_fixed._data, [data.fill_value, 0., 1.])
201
- assert_equal(data_fixed._mask, [1., 0., 1.])
202
-
203
- def test_maskedelement(self):
204
- # Test of masked element
205
- x = arange(6)
206
- x[1] = masked
207
- self.assertTrue(str(masked) == '--')
208
- self.assertTrue(x[1] is masked)
209
- assert_equal(filled(x[1], 0), 0)
210
- # don't know why these should raise an exception...
211
- #self.assertRaises(Exception, lambda x,y: x+y, masked, masked)
212
- #self.assertRaises(Exception, lambda x,y: x+y, masked, 2)
213
- #self.assertRaises(Exception, lambda x,y: x+y, masked, xx)
214
- #self.assertRaises(Exception, lambda x,y: x+y, xx, masked)
215
-
216
- def test_set_element_as_object(self):
217
- # Tests setting elements with object
218
- a = empty(1, dtype=object)
219
- x = (1, 2, 3, 4, 5)
220
- a[0] = x
221
- assert_equal(a[0], x)
222
- self.assertTrue(a[0] is x)
223
- #
224
- import datetime
225
- dt = datetime.datetime.now()
226
- a[0] = dt
227
- self.assertTrue(a[0] is dt)
228
-
229
- def test_indexing(self):
230
- # Tests conversions and indexing
231
- x1 = np.array([1, 2, 4, 3])
232
- x2 = array(x1, mask=[1, 0, 0, 0])
233
- x3 = array(x1, mask=[0, 1, 0, 1])
234
- x4 = array(x1)
235
- # test conversion to strings
236
- junk, garbage = str(x2), repr(x2)
237
- assert_equal(np.sort(x1), sort(x2, endwith=False))
238
- # tests of indexing
239
- assert_(type(x2[1]) is type(x1[1]))
240
- assert_(x1[1] == x2[1])
241
- assert_(x2[0] is masked)
242
- assert_equal(x1[2], x2[2])
243
- assert_equal(x1[2:5], x2[2:5])
244
- assert_equal(x1[:], x2[:])
245
- assert_equal(x1[1:], x3[1:])
246
- x1[2] = 9
247
- x2[2] = 9
248
- assert_equal(x1, x2)
249
- x1[1:3] = 99
250
- x2[1:3] = 99
251
- assert_equal(x1, x2)
252
- x2[1] = masked
253
- assert_equal(x1, x2)
254
- x2[1:3] = masked
255
- assert_equal(x1, x2)
256
- x2[:] = x1
257
- x2[1] = masked
258
- assert_(allequal(getmask(x2), array([0, 1, 0, 0])))
259
- x3[:] = masked_array([1, 2, 3, 4], [0, 1, 1, 0])
260
- assert_(allequal(getmask(x3), array([0, 1, 1, 0])))
261
- x4[:] = masked_array([1, 2, 3, 4], [0, 1, 1, 0])
262
- assert_(allequal(getmask(x4), array([0, 1, 1, 0])))
263
- assert_(allequal(x4, array([1, 2, 3, 4])))
264
- x1 = np.arange(5) * 1.0
265
- x2 = masked_values(x1, 3.0)
266
- assert_equal(x1, x2)
267
- assert_(allequal(array([0, 0, 0, 1, 0], MaskType), x2.mask))
268
- assert_equal(3.0, x2.fill_value)
269
- x1 = array([1, 'hello', 2, 3], object)
270
- x2 = np.array([1, 'hello', 2, 3], object)
271
- s1 = x1[1]
272
- s2 = x2[1]
273
- assert_equal(type(s2), str)
274
- assert_equal(type(s1), str)
275
- assert_equal(s1, s2)
276
- assert_(x1[1:1].shape == (0,))
277
-
278
- def test_copy(self):
279
- # Tests of some subtle points of copying and sizing.
280
- n = [0, 0, 1, 0, 0]
281
- m = make_mask(n)
282
- m2 = make_mask(m)
283
- self.assertTrue(m is m2)
284
- m3 = make_mask(m, copy=1)
285
- self.assertTrue(m is not m3)
286
-
287
- x1 = np.arange(5)
288
- y1 = array(x1, mask=m)
289
- #self.assertTrue( y1._data is x1)
290
- assert_equal(y1._data.__array_interface__, x1.__array_interface__)
291
- self.assertTrue(allequal(x1, y1.data))
292
- #self.assertTrue( y1.mask is m)
293
- assert_equal(y1._mask.__array_interface__, m.__array_interface__)
294
-
295
- y1a = array(y1)
296
- self.assertTrue(y1a._data.__array_interface__ ==
297
- y1._data.__array_interface__)
298
- self.assertTrue(y1a.mask is y1.mask)
299
-
300
- y2 = array(x1, mask=m)
301
- self.assertTrue(y2._data.__array_interface__ == x1.__array_interface__)
302
- #self.assertTrue( y2.mask is m)
303
- self.assertTrue(y2._mask.__array_interface__ == m.__array_interface__)
304
- self.assertTrue(y2[2] is masked)
305
- y2[2] = 9
306
- self.assertTrue(y2[2] is not masked)
307
- #self.assertTrue( y2.mask is not m)
308
- self.assertTrue(y2._mask.__array_interface__ != m.__array_interface__)
309
- self.assertTrue(allequal(y2.mask, 0))
310
-
311
- y3 = array(x1 * 1.0, mask=m)
312
- self.assertTrue(filled(y3).dtype is (x1 * 1.0).dtype)
313
-
314
- x4 = arange(4)
315
- x4[2] = masked
316
- y4 = resize(x4, (8,))
317
- assert_equal(concatenate([x4, x4]), y4)
318
- assert_equal(getmask(y4), [0, 0, 1, 0, 0, 0, 1, 0])
319
- y5 = repeat(x4, (2, 2, 2, 2), axis=0)
320
- assert_equal(y5, [0, 0, 1, 1, 2, 2, 3, 3])
321
- y6 = repeat(x4, 2, axis=0)
322
- assert_equal(y5, y6)
323
- y7 = x4.repeat((2, 2, 2, 2), axis=0)
324
- assert_equal(y5, y7)
325
- y8 = x4.repeat(2, 0)
326
- assert_equal(y5, y8)
327
-
328
- y9 = x4.copy()
329
- assert_equal(y9._data, x4._data)
330
- assert_equal(y9._mask, x4._mask)
331
- #
332
- x = masked_array([1, 2, 3], mask=[0, 1, 0])
333
- # Copy is False by default
334
- y = masked_array(x)
335
- assert_equal(y._data.ctypes.data, x._data.ctypes.data)
336
- assert_equal(y._mask.ctypes.data, x._mask.ctypes.data)
337
- y = masked_array(x, copy=True)
338
- assert_not_equal(y._data.ctypes.data, x._data.ctypes.data)
339
- assert_not_equal(y._mask.ctypes.data, x._mask.ctypes.data)
340
-
341
- def test_deepcopy(self):
342
- from copy import deepcopy
343
- a = array([0, 1, 2], mask=[False, True, False])
344
- copied = deepcopy(a)
345
- assert_equal(copied.mask, a.mask)
346
- assert_not_equal(id(a._mask), id(copied._mask))
347
- #
348
- copied[1] = 1
349
- assert_equal(copied.mask, [0, 0, 0])
350
- assert_equal(a.mask, [0, 1, 0])
351
- #
352
- copied = deepcopy(a)
353
- assert_equal(copied.mask, a.mask)
354
- copied.mask[1] = False
355
- assert_equal(copied.mask, [0, 0, 0])
356
- assert_equal(a.mask, [0, 1, 0])
357
-
358
- def test_str_repr(self):
359
- a = array([0, 1, 2], mask=[False, True, False])
360
- assert_equal(str(a), '[0 -- 2]')
361
- assert_equal(repr(a), 'masked_array(data = [0 -- 2],\n'
362
- ' mask = [False True False],\n'
363
- ' fill_value = 999999)\n')
364
-
365
- def test_pickling(self):
366
- # Tests pickling
367
- a = arange(10)
368
- a[::3] = masked
369
- a.fill_value = 999
370
- a_pickled = pickle.loads(a.dumps())
371
- assert_equal(a_pickled._mask, a._mask)
372
- assert_equal(a_pickled._data, a._data)
373
- assert_equal(a_pickled.fill_value, 999)
374
-
375
- def test_pickling_subbaseclass(self):
376
- # Test pickling w/ a subclass of ndarray
377
- a = array(np.matrix(list(range(10))), mask=[1, 0, 1, 0, 0] * 2)
378
- a_pickled = pickle.loads(a.dumps())
379
- assert_equal(a_pickled._mask, a._mask)
380
- assert_equal(a_pickled, a)
381
- self.assertTrue(isinstance(a_pickled._data, np.matrix))
382
-
383
- def test_pickling_maskedconstant(self):
384
- # Test pickling MaskedConstant
385
- mc = np.ma.masked
386
- mc_pickled = pickle.loads(mc.dumps())
387
- assert_equal(mc_pickled._baseclass, mc._baseclass)
388
- assert_equal(mc_pickled._mask, mc._mask)
389
- assert_equal(mc_pickled._data, mc._data)
390
-
391
- def test_pickling_wstructured(self):
392
- # Tests pickling w/ structured array
393
- a = array([(1, 1.), (2, 2.)], mask=[(0, 0), (0, 1)],
394
- dtype=[('a', int), ('b', float)])
395
- a_pickled = pickle.loads(a.dumps())
396
- assert_equal(a_pickled._mask, a._mask)
397
- assert_equal(a_pickled, a)
398
-
399
- def test_pickling_keepalignment(self):
400
- # Tests pickling w/ F_CONTIGUOUS arrays
401
- a = arange(10)
402
- a.shape = (-1, 2)
403
- b = a.T
404
- test = pickle.loads(pickle.dumps(b))
405
- assert_equal(test, b)
406
-
407
- def test_single_element_subscript(self):
408
- # Tests single element subscripts of Maskedarrays.
409
- a = array([1, 3, 2])
410
- b = array([1, 3, 2], mask=[1, 0, 1])
411
- assert_equal(a[0].shape, ())
412
- assert_equal(b[0].shape, ())
413
- assert_equal(b[1].shape, ())
414
-
415
- def test_topython(self):
416
- # Tests some communication issues with Python.
417
- assert_equal(1, int(array(1)))
418
- assert_equal(1.0, float(array(1)))
419
- assert_equal(1, int(array([[[1]]])))
420
- assert_equal(1.0, float(array([[1]])))
421
- self.assertRaises(TypeError, float, array([1, 1]))
422
- #
423
- with warnings.catch_warnings():
424
- warnings.simplefilter('ignore', UserWarning)
425
- assert_(np.isnan(float(array([1], mask=[1]))))
426
- #
427
- a = array([1, 2, 3], mask=[1, 0, 0])
428
- self.assertRaises(TypeError, lambda:float(a))
429
- assert_equal(float(a[-1]), 3.)
430
- self.assertTrue(np.isnan(float(a[0])))
431
- self.assertRaises(TypeError, int, a)
432
- assert_equal(int(a[-1]), 3)
433
- self.assertRaises(MAError, lambda:int(a[0]))
434
-
435
- def test_oddfeatures_1(self):
436
- # Test of other odd features
437
- x = arange(20)
438
- x = x.reshape(4, 5)
439
- x.flat[5] = 12
440
- assert_(x[1, 0] == 12)
441
- z = x + 10j * x
442
- assert_equal(z.real, x)
443
- assert_equal(z.imag, 10 * x)
444
- assert_equal((z * conjugate(z)).real, 101 * x * x)
445
- z.imag[...] = 0.0
446
- #
447
- x = arange(10)
448
- x[3] = masked
449
- assert_(str(x[3]) == str(masked))
450
- c = x >= 8
451
- assert_(count(where(c, masked, masked)) == 0)
452
- assert_(shape(where(c, masked, masked)) == c.shape)
453
- #
454
- z = masked_where(c, x)
455
- assert_(z.dtype is x.dtype)
456
- assert_(z[3] is masked)
457
- assert_(z[4] is not masked)
458
- assert_(z[7] is not masked)
459
- assert_(z[8] is masked)
460
- assert_(z[9] is masked)
461
- assert_equal(x, z)
462
-
463
- def test_oddfeatures_2(self):
464
- # Tests some more features.
465
- x = array([1., 2., 3., 4., 5.])
466
- c = array([1, 1, 1, 0, 0])
467
- x[2] = masked
468
- z = where(c, x, -x)
469
- assert_equal(z, [1., 2., 0., -4., -5])
470
- c[0] = masked
471
- z = where(c, x, -x)
472
- assert_equal(z, [1., 2., 0., -4., -5])
473
- assert_(z[0] is masked)
474
- assert_(z[1] is not masked)
475
- assert_(z[2] is masked)
476
-
477
- def test_oddfeatures_3(self):
478
- # Tests some generic features
479
- atest = array([10], mask=True)
480
- btest = array([20])
481
- idx = atest.mask
482
- atest[idx] = btest[idx]
483
- assert_equal(atest, [20])
484
-
485
- def test_filled_w_object_dtype(self):
486
- a = np.ma.masked_all(1, dtype='O')
487
- assert_equal(a.filled('x')[0], 'x')
488
-
489
- def test_filled_w_flexible_dtype(self):
490
- # Test filled w/ flexible dtype
491
- flexi = array([(1, 1, 1)],
492
- dtype=[('i', int), ('s', '|S8'), ('f', float)])
493
- flexi[0] = masked
494
- assert_equal(flexi.filled(),
495
- np.array([(default_fill_value(0),
496
- default_fill_value('0'),
497
- default_fill_value(0.),)], dtype=flexi.dtype))
498
- flexi[0] = masked
499
- assert_equal(flexi.filled(1),
500
- np.array([(1, '1', 1.)], dtype=flexi.dtype))
501
-
502
- def test_filled_w_mvoid(self):
503
- # Test filled w/ mvoid
504
- ndtype = [('a', int), ('b', float)]
505
- a = mvoid((1, 2.), mask=[(0, 1)], dtype=ndtype)
506
- # Filled using default
507
- test = a.filled()
508
- assert_equal(tuple(test), (1, default_fill_value(1.)))
509
- # Explicit fill_value
510
- test = a.filled((-1, -1))
511
- assert_equal(tuple(test), (1, -1))
512
- # Using predefined filling values
513
- a.fill_value = (-999, -999)
514
- assert_equal(tuple(a.filled()), (1, -999))
515
-
516
- def test_filled_w_nested_dtype(self):
517
- # Test filled w/ nested dtype
518
- ndtype = [('A', int), ('B', [('BA', int), ('BB', int)])]
519
- a = array([(1, (1, 1)), (2, (2, 2))],
520
- mask=[(0, (1, 0)), (0, (0, 1))], dtype=ndtype)
521
- test = a.filled(0)
522
- control = np.array([(1, (0, 1)), (2, (2, 0))], dtype=ndtype)
523
- assert_equal(test, control)
524
- #
525
- test = a['B'].filled(0)
526
- control = np.array([(0, 1), (2, 0)], dtype=a['B'].dtype)
527
- assert_equal(test, control)
528
-
529
- def test_filled_w_f_order(self):
530
- # Test filled w/ F-contiguous array
531
- a = array(np.array([(0, 1, 2), (4, 5, 6)], order='F'),
532
- mask=np.array([(0, 0, 1), (1, 0, 0)], order='F'),
533
- order='F') # this is currently ignored
534
- self.assertTrue(a.flags['F_CONTIGUOUS'])
535
- self.assertTrue(a.filled(0).flags['F_CONTIGUOUS'])
536
-
537
- def test_optinfo_propagation(self):
538
- # Checks that _optinfo dictionary isn't back-propagated
539
- x = array([1, 2, 3, ], dtype=float)
540
- x._optinfo['info'] = '???'
541
- y = x.copy()
542
- assert_equal(y._optinfo['info'], '???')
543
- y._optinfo['info'] = '!!!'
544
- assert_equal(x._optinfo['info'], '???')
545
-
546
- def test_fancy_printoptions(self):
547
- # Test printing a masked array w/ fancy dtype.
548
- fancydtype = np.dtype([('x', int), ('y', [('t', int), ('s', float)])])
549
- test = array([(1, (2, 3.0)), (4, (5, 6.0))],
550
- mask=[(1, (0, 1)), (0, (1, 0))],
551
- dtype=fancydtype)
552
- control = "[(--, (2, --)) (4, (--, 6.0))]"
553
- assert_equal(str(test), control)
554
-
555
- def test_flatten_structured_array(self):
556
- # Test flatten_structured_array on arrays
557
- # On ndarray
558
- ndtype = [('a', int), ('b', float)]
559
- a = np.array([(1, 1), (2, 2)], dtype=ndtype)
560
- test = flatten_structured_array(a)
561
- control = np.array([[1., 1.], [2., 2.]], dtype=np.float)
562
- assert_equal(test, control)
563
- assert_equal(test.dtype, control.dtype)
564
- # On masked_array
565
- a = array([(1, 1), (2, 2)], mask=[(0, 1), (1, 0)], dtype=ndtype)
566
- test = flatten_structured_array(a)
567
- control = array([[1., 1.], [2., 2.]],
568
- mask=[[0, 1], [1, 0]], dtype=np.float)
569
- assert_equal(test, control)
570
- assert_equal(test.dtype, control.dtype)
571
- assert_equal(test.mask, control.mask)
572
- # On masked array with nested structure
573
- ndtype = [('a', int), ('b', [('ba', int), ('bb', float)])]
574
- a = array([(1, (1, 1.1)), (2, (2, 2.2))],
575
- mask=[(0, (1, 0)), (1, (0, 1))], dtype=ndtype)
576
- test = flatten_structured_array(a)
577
- control = array([[1., 1., 1.1], [2., 2., 2.2]],
578
- mask=[[0, 1, 0], [1, 0, 1]], dtype=np.float)
579
- assert_equal(test, control)
580
- assert_equal(test.dtype, control.dtype)
581
- assert_equal(test.mask, control.mask)
582
- # Keeping the initial shape
583
- ndtype = [('a', int), ('b', float)]
584
- a = np.array([[(1, 1), ], [(2, 2), ]], dtype=ndtype)
585
- test = flatten_structured_array(a)
586
- control = np.array([[[1., 1.], ], [[2., 2.], ]], dtype=np.float)
587
- assert_equal(test, control)
588
- assert_equal(test.dtype, control.dtype)
589
-
590
- def test_void0d(self):
591
- # Test creating a mvoid object
592
- ndtype = [('a', int), ('b', int)]
593
- a = np.array([(1, 2,)], dtype=ndtype)[0]
594
- f = mvoid(a)
595
- assert_(isinstance(f, mvoid))
596
- #
597
- a = masked_array([(1, 2)], mask=[(1, 0)], dtype=ndtype)[0]
598
- assert_(isinstance(a, mvoid))
599
- #
600
- a = masked_array([(1, 2), (1, 2)], mask=[(1, 0), (0, 0)], dtype=ndtype)
601
- f = mvoid(a._data[0], a._mask[0])
602
- assert_(isinstance(f, mvoid))
603
-
604
- def test_mvoid_getitem(self):
605
- # Test mvoid.__getitem__
606
- ndtype = [('a', int), ('b', int)]
607
- a = masked_array([(1, 2,), (3, 4)], mask=[(0, 0), (1, 0)],
608
- dtype=ndtype)
609
- # w/o mask
610
- f = a[0]
611
- self.assertTrue(isinstance(f, mvoid))
612
- assert_equal((f[0], f['a']), (1, 1))
613
- assert_equal(f['b'], 2)
614
- # w/ mask
615
- f = a[1]
616
- self.assertTrue(isinstance(f, mvoid))
617
- self.assertTrue(f[0] is masked)
618
- self.assertTrue(f['a'] is masked)
619
- assert_equal(f[1], 4)
620
-
621
- def test_mvoid_iter(self):
622
- # Test iteration on __getitem__
623
- ndtype = [('a', int), ('b', int)]
624
- a = masked_array([(1, 2,), (3, 4)], mask=[(0, 0), (1, 0)],
625
- dtype=ndtype)
626
- # w/o mask
627
- assert_equal(list(a[0]), [1, 2])
628
- # w/ mask
629
- assert_equal(list(a[1]), [masked, 4])
630
-
631
- def test_mvoid_print(self):
632
- # Test printing a mvoid
633
- mx = array([(1, 1), (2, 2)], dtype=[('a', int), ('b', int)])
634
- assert_equal(str(mx[0]), "(1, 1)")
635
- mx['b'][0] = masked
636
- ini_display = masked_print_option._display
637
- masked_print_option.set_display("-X-")
638
- try:
639
- assert_equal(str(mx[0]), "(1, -X-)")
640
- assert_equal(repr(mx[0]), "(1, -X-)")
641
- finally:
642
- masked_print_option.set_display(ini_display)
643
-
644
-
645
- #------------------------------------------------------------------------------
646
- class TestMaskedArrayArithmetic(TestCase):
647
- # Base test class for MaskedArrays.
648
-
649
- def setUp(self):
650
- # Base data definition.
651
- x = np.array([1., 1., 1., -2., pi/2.0, 4., 5., -10., 10., 1., 2., 3.])
652
- y = np.array([5., 0., 3., 2., -1., -4., 0., -10., 10., 1., 0., 3.])
653
- a10 = 10.
654
- m1 = [1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0]
655
- m2 = [0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 1]
656
- xm = masked_array(x, mask=m1)
657
- ym = masked_array(y, mask=m2)
658
- z = np.array([-.5, 0., .5, .8])
659
- zm = masked_array(z, mask=[0, 1, 0, 0])
660
- xf = np.where(m1, 1e+20, x)
661
- xm.set_fill_value(1e+20)
662
- self.d = (x, y, a10, m1, m2, xm, ym, z, zm, xf)
663
- self.err_status = np.geterr()
664
- np.seterr(divide='ignore', invalid='ignore')
665
-
666
- def tearDown(self):
667
- np.seterr(**self.err_status)
668
-
669
- def test_basic_arithmetic(self):
670
- # Test of basic arithmetic.
671
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
672
- a2d = array([[1, 2], [0, 4]])
673
- a2dm = masked_array(a2d, [[0, 0], [1, 0]])
674
- assert_equal(a2d * a2d, a2d * a2dm)
675
- assert_equal(a2d + a2d, a2d + a2dm)
676
- assert_equal(a2d - a2d, a2d - a2dm)
677
- for s in [(12,), (4, 3), (2, 6)]:
678
- x = x.reshape(s)
679
- y = y.reshape(s)
680
- xm = xm.reshape(s)
681
- ym = ym.reshape(s)
682
- xf = xf.reshape(s)
683
- assert_equal(-x, -xm)
684
- assert_equal(x + y, xm + ym)
685
- assert_equal(x - y, xm - ym)
686
- assert_equal(x * y, xm * ym)
687
- assert_equal(x / y, xm / ym)
688
- assert_equal(a10 + y, a10 + ym)
689
- assert_equal(a10 - y, a10 - ym)
690
- assert_equal(a10 * y, a10 * ym)
691
- assert_equal(a10 / y, a10 / ym)
692
- assert_equal(x + a10, xm + a10)
693
- assert_equal(x - a10, xm - a10)
694
- assert_equal(x * a10, xm * a10)
695
- assert_equal(x / a10, xm / a10)
696
- assert_equal(x ** 2, xm ** 2)
697
- assert_equal(abs(x) ** 2.5, abs(xm) ** 2.5)
698
- assert_equal(x ** y, xm ** ym)
699
- assert_equal(np.add(x, y), add(xm, ym))
700
- assert_equal(np.subtract(x, y), subtract(xm, ym))
701
- assert_equal(np.multiply(x, y), multiply(xm, ym))
702
- assert_equal(np.divide(x, y), divide(xm, ym))
703
-
704
- def test_divide_on_different_shapes(self):
705
- x = arange(6, dtype=float)
706
- x.shape = (2, 3)
707
- y = arange(3, dtype=float)
708
- #
709
- z = x / y
710
- assert_equal(z, [[-1., 1., 1.], [-1., 4., 2.5]])
711
- assert_equal(z.mask, [[1, 0, 0], [1, 0, 0]])
712
- #
713
- z = x / y[None,:]
714
- assert_equal(z, [[-1., 1., 1.], [-1., 4., 2.5]])
715
- assert_equal(z.mask, [[1, 0, 0], [1, 0, 0]])
716
- #
717
- y = arange(2, dtype=float)
718
- z = x / y[:, None]
719
- assert_equal(z, [[-1., -1., -1.], [3., 4., 5.]])
720
- assert_equal(z.mask, [[1, 1, 1], [0, 0, 0]])
721
-
722
- def test_mixed_arithmetic(self):
723
- # Tests mixed arithmetics.
724
- na = np.array([1])
725
- ma = array([1])
726
- self.assertTrue(isinstance(na + ma, MaskedArray))
727
- self.assertTrue(isinstance(ma + na, MaskedArray))
728
-
729
- def test_limits_arithmetic(self):
730
- tiny = np.finfo(float).tiny
731
- a = array([tiny, 1. / tiny, 0.])
732
- assert_equal(getmaskarray(a / 2), [0, 0, 0])
733
- assert_equal(getmaskarray(2 / a), [1, 0, 1])
734
-
735
- def test_masked_singleton_arithmetic(self):
736
- # Tests some scalar arithmetics on MaskedArrays.
737
- # Masked singleton should remain masked no matter what
738
- xm = array(0, mask=1)
739
- self.assertTrue((1 / array(0)).mask)
740
- self.assertTrue((1 + xm).mask)
741
- self.assertTrue((-xm).mask)
742
- self.assertTrue(maximum(xm, xm).mask)
743
- self.assertTrue(minimum(xm, xm).mask)
744
-
745
- def test_masked_singleton_equality(self):
746
- # Tests (in)equality on masked snigleton
747
- a = array([1, 2, 3], mask=[1, 1, 0])
748
- assert_((a[0] == 0) is masked)
749
- assert_((a[0] != 0) is masked)
750
- assert_equal((a[-1] == 0), False)
751
- assert_equal((a[-1] != 0), True)
752
-
753
- def test_arithmetic_with_masked_singleton(self):
754
- # Checks that there's no collapsing to masked
755
- x = masked_array([1, 2])
756
- y = x * masked
757
- assert_equal(y.shape, x.shape)
758
- assert_equal(y._mask, [True, True])
759
- y = x[0] * masked
760
- assert_(y is masked)
761
- y = x + masked
762
- assert_equal(y.shape, x.shape)
763
- assert_equal(y._mask, [True, True])
764
-
765
- def test_arithmetic_with_masked_singleton_on_1d_singleton(self):
766
- # Check that we're not losing the shape of a singleton
767
- x = masked_array([1, ])
768
- y = x + masked
769
- assert_equal(y.shape, x.shape)
770
- assert_equal(y.mask, [True, ])
771
-
772
- def test_scalar_arithmetic(self):
773
- x = array(0, mask=0)
774
- assert_equal(x.filled().ctypes.data, x.ctypes.data)
775
- # Make sure we don't lose the shape in some circumstances
776
- xm = array((0, 0)) / 0.
777
- assert_equal(xm.shape, (2,))
778
- assert_equal(xm.mask, [1, 1])
779
-
780
- def test_basic_ufuncs(self):
781
- # Test various functions such as sin, cos.
782
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
783
- assert_equal(np.cos(x), cos(xm))
784
- assert_equal(np.cosh(x), cosh(xm))
785
- assert_equal(np.sin(x), sin(xm))
786
- assert_equal(np.sinh(x), sinh(xm))
787
- assert_equal(np.tan(x), tan(xm))
788
- assert_equal(np.tanh(x), tanh(xm))
789
- assert_equal(np.sqrt(abs(x)), sqrt(xm))
790
- assert_equal(np.log(abs(x)), log(xm))
791
- assert_equal(np.log10(abs(x)), log10(xm))
792
- assert_equal(np.exp(x), exp(xm))
793
- assert_equal(np.arcsin(z), arcsin(zm))
794
- assert_equal(np.arccos(z), arccos(zm))
795
- assert_equal(np.arctan(z), arctan(zm))
796
- assert_equal(np.arctan2(x, y), arctan2(xm, ym))
797
- assert_equal(np.absolute(x), absolute(xm))
798
- assert_equal(np.angle(x + 1j*y), angle(xm + 1j*ym))
799
- assert_equal(np.angle(x + 1j*y, deg=True), angle(xm + 1j*ym, deg=True))
800
- assert_equal(np.equal(x, y), equal(xm, ym))
801
- assert_equal(np.not_equal(x, y), not_equal(xm, ym))
802
- assert_equal(np.less(x, y), less(xm, ym))
803
- assert_equal(np.greater(x, y), greater(xm, ym))
804
- assert_equal(np.less_equal(x, y), less_equal(xm, ym))
805
- assert_equal(np.greater_equal(x, y), greater_equal(xm, ym))
806
- assert_equal(np.conjugate(x), conjugate(xm))
807
-
808
- def test_count_func(self):
809
- # Tests count
810
- assert_equal(1, count(1))
811
- assert_equal(0, array(1, mask=[1]))
812
-
813
- ott = array([0., 1., 2., 3.], mask=[1, 0, 0, 0])
814
- res = count(ott)
815
- self.assertTrue(res.dtype.type is np.intp)
816
- assert_equal(3, res)
817
-
818
- ott = ott.reshape((2, 2))
819
- res = count(ott)
820
- assert_(res.dtype.type is np.intp)
821
- assert_equal(3, res)
822
- res = count(ott, 0)
823
- assert_(isinstance(res, ndarray))
824
- assert_equal([1, 2], res)
825
- assert_(getmask(res) is nomask)
826
-
827
- ott= array([0., 1., 2., 3.])
828
- res = count(ott, 0)
829
- assert_(isinstance(res, ndarray))
830
- assert_(res.dtype.type is np.intp)
831
-
832
- assert_raises(IndexError, ott.count, 1)
833
-
834
- def test_minmax_func(self):
835
- # Tests minimum and maximum.
836
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
837
- # max doesn't work if shaped
838
- xr = np.ravel(x)
839
- xmr = ravel(xm)
840
- # following are true because of careful selection of data
841
- assert_equal(max(xr), maximum(xmr))
842
- assert_equal(min(xr), minimum(xmr))
843
- #
844
- assert_equal(minimum([1, 2, 3], [4, 0, 9]), [1, 0, 3])
845
- assert_equal(maximum([1, 2, 3], [4, 0, 9]), [4, 2, 9])
846
- x = arange(5)
847
- y = arange(5) - 2
848
- x[3] = masked
849
- y[0] = masked
850
- assert_equal(minimum(x, y), where(less(x, y), x, y))
851
- assert_equal(maximum(x, y), where(greater(x, y), x, y))
852
- assert_(minimum(x) == 0)
853
- assert_(maximum(x) == 4)
854
- #
855
- x = arange(4).reshape(2, 2)
856
- x[-1, -1] = masked
857
- assert_equal(maximum(x), 2)
858
-
859
- def test_minimummaximum_func(self):
860
- a = np.ones((2, 2))
861
- aminimum = minimum(a, a)
862
- self.assertTrue(isinstance(aminimum, MaskedArray))
863
- assert_equal(aminimum, np.minimum(a, a))
864
- #
865
- aminimum = minimum.outer(a, a)
866
- self.assertTrue(isinstance(aminimum, MaskedArray))
867
- assert_equal(aminimum, np.minimum.outer(a, a))
868
- #
869
- amaximum = maximum(a, a)
870
- self.assertTrue(isinstance(amaximum, MaskedArray))
871
- assert_equal(amaximum, np.maximum(a, a))
872
- #
873
- amaximum = maximum.outer(a, a)
874
- self.assertTrue(isinstance(amaximum, MaskedArray))
875
- assert_equal(amaximum, np.maximum.outer(a, a))
876
-
877
- def test_minmax_reduce(self):
878
- # Test np.min/maximum.reduce on array w/ full False mask
879
- a = array([1, 2, 3], mask=[False, False, False])
880
- b = np.maximum.reduce(a)
881
- assert_equal(b, 3)
882
-
883
- def test_minmax_funcs_with_output(self):
884
- # Tests the min/max functions with explicit outputs
885
- mask = np.random.rand(12).round()
886
- xm = array(np.random.uniform(0, 10, 12), mask=mask)
887
- xm.shape = (3, 4)
888
- for funcname in ('min', 'max'):
889
- # Initialize
890
- npfunc = getattr(np, funcname)
891
- mafunc = getattr(numpy.ma.core, funcname)
892
- # Use the np version
893
- nout = np.empty((4,), dtype=int)
894
- try:
895
- result = npfunc(xm, axis=0, out=nout)
896
- except MaskError:
897
- pass
898
- nout = np.empty((4,), dtype=float)
899
- result = npfunc(xm, axis=0, out=nout)
900
- self.assertTrue(result is nout)
901
- # Use the ma version
902
- nout.fill(-999)
903
- result = mafunc(xm, axis=0, out=nout)
904
- self.assertTrue(result is nout)
905
-
906
- def test_minmax_methods(self):
907
- # Additional tests on max/min
908
- (_, _, _, _, _, xm, _, _, _, _) = self.d
909
- xm.shape = (xm.size,)
910
- assert_equal(xm.max(), 10)
911
- self.assertTrue(xm[0].max() is masked)
912
- self.assertTrue(xm[0].max(0) is masked)
913
- self.assertTrue(xm[0].max(-1) is masked)
914
- assert_equal(xm.min(), -10.)
915
- self.assertTrue(xm[0].min() is masked)
916
- self.assertTrue(xm[0].min(0) is masked)
917
- self.assertTrue(xm[0].min(-1) is masked)
918
- assert_equal(xm.ptp(), 20.)
919
- self.assertTrue(xm[0].ptp() is masked)
920
- self.assertTrue(xm[0].ptp(0) is masked)
921
- self.assertTrue(xm[0].ptp(-1) is masked)
922
- #
923
- x = array([1, 2, 3], mask=True)
924
- self.assertTrue(x.min() is masked)
925
- self.assertTrue(x.max() is masked)
926
- self.assertTrue(x.ptp() is masked)
927
-
928
- def test_addsumprod(self):
929
- # Tests add, sum, product.
930
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
931
- assert_equal(np.add.reduce(x), add.reduce(x))
932
- assert_equal(np.add.accumulate(x), add.accumulate(x))
933
- assert_equal(4, sum(array(4), axis=0))
934
- assert_equal(4, sum(array(4), axis=0))
935
- assert_equal(np.sum(x, axis=0), sum(x, axis=0))
936
- assert_equal(np.sum(filled(xm, 0), axis=0), sum(xm, axis=0))
937
- assert_equal(np.sum(x, 0), sum(x, 0))
938
- assert_equal(np.product(x, axis=0), product(x, axis=0))
939
- assert_equal(np.product(x, 0), product(x, 0))
940
- assert_equal(np.product(filled(xm, 1), axis=0), product(xm, axis=0))
941
- s = (3, 4)
942
- x.shape = y.shape = xm.shape = ym.shape = s
943
- if len(s) > 1:
944
- assert_equal(np.concatenate((x, y), 1), concatenate((xm, ym), 1))
945
- assert_equal(np.add.reduce(x, 1), add.reduce(x, 1))
946
- assert_equal(np.sum(x, 1), sum(x, 1))
947
- assert_equal(np.product(x, 1), product(x, 1))
948
-
949
- def test_binops_d2D(self):
950
- # Test binary operations on 2D data
951
- a = array([[1.], [2.], [3.]], mask=[[False], [True], [True]])
952
- b = array([[2., 3.], [4., 5.], [6., 7.]])
953
- #
954
- test = a * b
955
- control = array([[2., 3.], [2., 2.], [3., 3.]],
956
- mask=[[0, 0], [1, 1], [1, 1]])
957
- assert_equal(test, control)
958
- assert_equal(test.data, control.data)
959
- assert_equal(test.mask, control.mask)
960
- #
961
- test = b * a
962
- control = array([[2., 3.], [4., 5.], [6., 7.]],
963
- mask=[[0, 0], [1, 1], [1, 1]])
964
- assert_equal(test, control)
965
- assert_equal(test.data, control.data)
966
- assert_equal(test.mask, control.mask)
967
- #
968
- a = array([[1.], [2.], [3.]])
969
- b = array([[2., 3.], [4., 5.], [6., 7.]],
970
- mask=[[0, 0], [0, 0], [0, 1]])
971
- test = a * b
972
- control = array([[2, 3], [8, 10], [18, 3]],
973
- mask=[[0, 0], [0, 0], [0, 1]])
974
- assert_equal(test, control)
975
- assert_equal(test.data, control.data)
976
- assert_equal(test.mask, control.mask)
977
- #
978
- test = b * a
979
- control = array([[2, 3], [8, 10], [18, 7]],
980
- mask=[[0, 0], [0, 0], [0, 1]])
981
- assert_equal(test, control)
982
- assert_equal(test.data, control.data)
983
- assert_equal(test.mask, control.mask)
984
-
985
- def test_domained_binops_d2D(self):
986
- # Test domained binary operations on 2D data
987
- a = array([[1.], [2.], [3.]], mask=[[False], [True], [True]])
988
- b = array([[2., 3.], [4., 5.], [6., 7.]])
989
- #
990
- test = a / b
991
- control = array([[1. / 2., 1. / 3.], [2., 2.], [3., 3.]],
992
- mask=[[0, 0], [1, 1], [1, 1]])
993
- assert_equal(test, control)
994
- assert_equal(test.data, control.data)
995
- assert_equal(test.mask, control.mask)
996
- #
997
- test = b / a
998
- control = array([[2. / 1., 3. / 1.], [4., 5.], [6., 7.]],
999
- mask=[[0, 0], [1, 1], [1, 1]])
1000
- assert_equal(test, control)
1001
- assert_equal(test.data, control.data)
1002
- assert_equal(test.mask, control.mask)
1003
- #
1004
- a = array([[1.], [2.], [3.]])
1005
- b = array([[2., 3.], [4., 5.], [6., 7.]],
1006
- mask=[[0, 0], [0, 0], [0, 1]])
1007
- test = a / b
1008
- control = array([[1. / 2, 1. / 3], [2. / 4, 2. / 5], [3. / 6, 3]],
1009
- mask=[[0, 0], [0, 0], [0, 1]])
1010
- assert_equal(test, control)
1011
- assert_equal(test.data, control.data)
1012
- assert_equal(test.mask, control.mask)
1013
- #
1014
- test = b / a
1015
- control = array([[2 / 1., 3 / 1.], [4 / 2., 5 / 2.], [6 / 3., 7]],
1016
- mask=[[0, 0], [0, 0], [0, 1]])
1017
- assert_equal(test, control)
1018
- assert_equal(test.data, control.data)
1019
- assert_equal(test.mask, control.mask)
1020
-
1021
- def test_noshrinking(self):
1022
- # Check that we don't shrink a mask when not wanted
1023
- # Binary operations
1024
- a = masked_array([1., 2., 3.], mask=[False, False, False],
1025
- shrink=False)
1026
- b = a + 1
1027
- assert_equal(b.mask, [0, 0, 0])
1028
- # In place binary operation
1029
- a += 1
1030
- assert_equal(a.mask, [0, 0, 0])
1031
- # Domained binary operation
1032
- b = a / 1.
1033
- assert_equal(b.mask, [0, 0, 0])
1034
- # In place binary operation
1035
- a /= 1.
1036
- assert_equal(a.mask, [0, 0, 0])
1037
-
1038
- def test_mod(self):
1039
- # Tests mod
1040
- (x, y, a10, m1, m2, xm, ym, z, zm, xf) = self.d
1041
- assert_equal(mod(x, y), mod(xm, ym))
1042
- test = mod(ym, xm)
1043
- assert_equal(test, np.mod(ym, xm))
1044
- assert_equal(test.mask, mask_or(xm.mask, ym.mask))
1045
- test = mod(xm, ym)
1046
- assert_equal(test, np.mod(xm, ym))
1047
- assert_equal(test.mask, mask_or(mask_or(xm.mask, ym.mask), (ym == 0)))
1048
-
1049
- def test_TakeTransposeInnerOuter(self):
1050
- # Test of take, transpose, inner, outer products
1051
- x = arange(24)
1052
- y = np.arange(24)
1053
- x[5:6] = masked
1054
- x = x.reshape(2, 3, 4)
1055
- y = y.reshape(2, 3, 4)
1056
- assert_equal(np.transpose(y, (2, 0, 1)), transpose(x, (2, 0, 1)))
1057
- assert_equal(np.take(y, (2, 0, 1), 1), take(x, (2, 0, 1), 1))
1058
- assert_equal(np.inner(filled(x, 0), filled(y, 0)),
1059
- inner(x, y))
1060
- assert_equal(np.outer(filled(x, 0), filled(y, 0)),
1061
- outer(x, y))
1062
- y = array(['abc', 1, 'def', 2, 3], object)
1063
- y[2] = masked
1064
- t = take(y, [0, 3, 4])
1065
- assert_(t[0] == 'abc')
1066
- assert_(t[1] == 2)
1067
- assert_(t[2] == 3)
1068
-
1069
- def test_imag_real(self):
1070
- # Check complex
1071
- xx = array([1 + 10j, 20 + 2j], mask=[1, 0])
1072
- assert_equal(xx.imag, [10, 2])
1073
- assert_equal(xx.imag.filled(), [1e+20, 2])
1074
- assert_equal(xx.imag.dtype, xx._data.imag.dtype)
1075
- assert_equal(xx.real, [1, 20])
1076
- assert_equal(xx.real.filled(), [1e+20, 20])
1077
- assert_equal(xx.real.dtype, xx._data.real.dtype)
1078
-
1079
- def test_methods_with_output(self):
1080
- xm = array(np.random.uniform(0, 10, 12)).reshape(3, 4)
1081
- xm[:, 0] = xm[0] = xm[-1, -1] = masked
1082
- #
1083
- funclist = ('sum', 'prod', 'var', 'std', 'max', 'min', 'ptp', 'mean',)
1084
- #
1085
- for funcname in funclist:
1086
- npfunc = getattr(np, funcname)
1087
- xmmeth = getattr(xm, funcname)
1088
- # A ndarray as explicit input
1089
- output = np.empty(4, dtype=float)
1090
- output.fill(-9999)
1091
- result = npfunc(xm, axis=0, out=output)
1092
- # ... the result should be the given output
1093
- assert_(result is output)
1094
- assert_equal(result, xmmeth(axis=0, out=output))
1095
- #
1096
- output = empty(4, dtype=int)
1097
- result = xmmeth(axis=0, out=output)
1098
- assert_(result is output)
1099
- assert_(output[0] is masked)
1100
-
1101
- def test_eq_on_structured(self):
1102
- # Test the equality of structured arrays
1103
- ndtype = [('A', int), ('B', int)]
1104
- a = array([(1, 1), (2, 2)], mask=[(0, 1), (0, 0)], dtype=ndtype)
1105
- test = (a == a)
1106
- assert_equal(test, [True, True])
1107
- assert_equal(test.mask, [False, False])
1108
- b = array([(1, 1), (2, 2)], mask=[(1, 0), (0, 0)], dtype=ndtype)
1109
- test = (a == b)
1110
- assert_equal(test, [False, True])
1111
- assert_equal(test.mask, [True, False])
1112
- b = array([(1, 1), (2, 2)], mask=[(0, 1), (1, 0)], dtype=ndtype)
1113
- test = (a == b)
1114
- assert_equal(test, [True, False])
1115
- assert_equal(test.mask, [False, False])
1116
-
1117
- def test_ne_on_structured(self):
1118
- # Test the equality of structured arrays
1119
- ndtype = [('A', int), ('B', int)]
1120
- a = array([(1, 1), (2, 2)], mask=[(0, 1), (0, 0)], dtype=ndtype)
1121
- test = (a != a)
1122
- assert_equal(test, [False, False])
1123
- assert_equal(test.mask, [False, False])
1124
- b = array([(1, 1), (2, 2)], mask=[(1, 0), (0, 0)], dtype=ndtype)
1125
- test = (a != b)
1126
- assert_equal(test, [True, False])
1127
- assert_equal(test.mask, [True, False])
1128
- b = array([(1, 1), (2, 2)], mask=[(0, 1), (1, 0)], dtype=ndtype)
1129
- test = (a != b)
1130
- assert_equal(test, [False, True])
1131
- assert_equal(test.mask, [False, False])
1132
-
1133
- def test_eq_w_None(self):
1134
- # Really, comparisons with None should not be done, but
1135
- # check them anyway
1136
- # With partial mask
1137
- a = array([1, 2], mask=[0, 1])
1138
- assert_equal(a == None, False)
1139
- assert_equal(a.data == None, False)
1140
- assert_equal(a.mask == None, False)
1141
- assert_equal(a != None, True)
1142
- # With nomask
1143
- a = array([1, 2], mask=False)
1144
- assert_equal(a == None, False)
1145
- assert_equal(a != None, True)
1146
- # With complete mask
1147
- a = array([1, 2], mask=True)
1148
- assert_equal(a == None, False)
1149
- assert_equal(a != None, True)
1150
- # Fully masked, even comparison to None should return "masked"
1151
- a = masked
1152
- assert_equal(a == None, masked)
1153
-
1154
- def test_eq_w_scalar(self):
1155
- a = array(1)
1156
- assert_equal(a == 1, True)
1157
- assert_equal(a == 0, False)
1158
- assert_equal(a != 1, False)
1159
- assert_equal(a != 0, True)
1160
-
1161
- def test_numpyarithmetics(self):
1162
- # Check that the mask is not back-propagated when using numpy functions
1163
- a = masked_array([-1, 0, 1, 2, 3], mask=[0, 0, 0, 0, 1])
1164
- control = masked_array([np.nan, np.nan, 0, np.log(2), -1],
1165
- mask=[1, 1, 0, 0, 1])
1166
- #
1167
- test = log(a)
1168
- assert_equal(test, control)
1169
- assert_equal(test.mask, control.mask)
1170
- assert_equal(a.mask, [0, 0, 0, 0, 1])
1171
- #
1172
- test = np.log(a)
1173
- assert_equal(test, control)
1174
- assert_equal(test.mask, control.mask)
1175
- assert_equal(a.mask, [0, 0, 0, 0, 1])
1176
-
1177
-
1178
- #------------------------------------------------------------------------------
1179
- class TestMaskedArrayAttributes(TestCase):
1180
-
1181
- def test_keepmask(self):
1182
- # Tests the keep mask flag
1183
- x = masked_array([1, 2, 3], mask=[1, 0, 0])
1184
- mx = masked_array(x)
1185
- assert_equal(mx.mask, x.mask)
1186
- mx = masked_array(x, mask=[0, 1, 0], keep_mask=False)
1187
- assert_equal(mx.mask, [0, 1, 0])
1188
- mx = masked_array(x, mask=[0, 1, 0], keep_mask=True)
1189
- assert_equal(mx.mask, [1, 1, 0])
1190
- # We default to true
1191
- mx = masked_array(x, mask=[0, 1, 0])
1192
- assert_equal(mx.mask, [1, 1, 0])
1193
-
1194
- def test_hardmask(self):
1195
- # Test hard_mask
1196
- d = arange(5)
1197
- n = [0, 0, 0, 1, 1]
1198
- m = make_mask(n)
1199
- xh = array(d, mask=m, hard_mask=True)
1200
- # We need to copy, to avoid updating d in xh !
1201
- xs = array(d, mask=m, hard_mask=False, copy=True)
1202
- xh[[1, 4]] = [10, 40]
1203
- xs[[1, 4]] = [10, 40]
1204
- assert_equal(xh._data, [0, 10, 2, 3, 4])
1205
- assert_equal(xs._data, [0, 10, 2, 3, 40])
1206
- #assert_equal(xh.mask.ctypes._data, m.ctypes._data)
1207
- assert_equal(xs.mask, [0, 0, 0, 1, 0])
1208
- self.assertTrue(xh._hardmask)
1209
- self.assertTrue(not xs._hardmask)
1210
- xh[1:4] = [10, 20, 30]
1211
- xs[1:4] = [10, 20, 30]
1212
- assert_equal(xh._data, [0, 10, 20, 3, 4])
1213
- assert_equal(xs._data, [0, 10, 20, 30, 40])
1214
- #assert_equal(xh.mask.ctypes._data, m.ctypes._data)
1215
- assert_equal(xs.mask, nomask)
1216
- xh[0] = masked
1217
- xs[0] = masked
1218
- assert_equal(xh.mask, [1, 0, 0, 1, 1])
1219
- assert_equal(xs.mask, [1, 0, 0, 0, 0])
1220
- xh[:] = 1
1221
- xs[:] = 1
1222
- assert_equal(xh._data, [0, 1, 1, 3, 4])
1223
- assert_equal(xs._data, [1, 1, 1, 1, 1])
1224
- assert_equal(xh.mask, [1, 0, 0, 1, 1])
1225
- assert_equal(xs.mask, nomask)
1226
- # Switch to soft mask
1227
- xh.soften_mask()
1228
- xh[:] = arange(5)
1229
- assert_equal(xh._data, [0, 1, 2, 3, 4])
1230
- assert_equal(xh.mask, nomask)
1231
- # Switch back to hard mask
1232
- xh.harden_mask()
1233
- xh[xh < 3] = masked
1234
- assert_equal(xh._data, [0, 1, 2, 3, 4])
1235
- assert_equal(xh._mask, [1, 1, 1, 0, 0])
1236
- xh[filled(xh > 1, False)] = 5
1237
- assert_equal(xh._data, [0, 1, 2, 5, 5])
1238
- assert_equal(xh._mask, [1, 1, 1, 0, 0])
1239
- #
1240
- xh = array([[1, 2], [3, 4]], mask=[[1, 0], [0, 0]], hard_mask=True)
1241
- xh[0] = 0
1242
- assert_equal(xh._data, [[1, 0], [3, 4]])
1243
- assert_equal(xh._mask, [[1, 0], [0, 0]])
1244
- xh[-1, -1] = 5
1245
- assert_equal(xh._data, [[1, 0], [3, 5]])
1246
- assert_equal(xh._mask, [[1, 0], [0, 0]])
1247
- xh[filled(xh < 5, False)] = 2
1248
- assert_equal(xh._data, [[1, 2], [2, 5]])
1249
- assert_equal(xh._mask, [[1, 0], [0, 0]])
1250
-
1251
- def test_hardmask_again(self):
1252
- # Another test of hardmask
1253
- d = arange(5)
1254
- n = [0, 0, 0, 1, 1]
1255
- m = make_mask(n)
1256
- xh = array(d, mask=m, hard_mask=True)
1257
- xh[4:5] = 999
1258
- #assert_equal(xh.mask.ctypes._data, m.ctypes._data)
1259
- xh[0:1] = 999
1260
- assert_equal(xh._data, [999, 1, 2, 3, 4])
1261
-
1262
- def test_hardmask_oncemore_yay(self):
1263
- # OK, yet another test of hardmask
1264
- # Make sure that harden_mask/soften_mask//unshare_mask returns self
1265
- a = array([1, 2, 3], mask=[1, 0, 0])
1266
- b = a.harden_mask()
1267
- assert_equal(a, b)
1268
- b[0] = 0
1269
- assert_equal(a, b)
1270
- assert_equal(b, array([1, 2, 3], mask=[1, 0, 0]))
1271
- a = b.soften_mask()
1272
- a[0] = 0
1273
- assert_equal(a, b)
1274
- assert_equal(b, array([0, 2, 3], mask=[0, 0, 0]))
1275
-
1276
- def test_smallmask(self):
1277
- # Checks the behaviour of _smallmask
1278
- a = arange(10)
1279
- a[1] = masked
1280
- a[1] = 1
1281
- assert_equal(a._mask, nomask)
1282
- a = arange(10)
1283
- a._smallmask = False
1284
- a[1] = masked
1285
- a[1] = 1
1286
- assert_equal(a._mask, zeros(10))
1287
-
1288
- def test_shrink_mask(self):
1289
- # Tests .shrink_mask()
1290
- a = array([1, 2, 3], mask=[0, 0, 0])
1291
- b = a.shrink_mask()
1292
- assert_equal(a, b)
1293
- assert_equal(a.mask, nomask)
1294
-
1295
- def test_flat(self):
1296
- # Test that flat can return all types of items [#4585, #4615]
1297
- # test simple access
1298
- test = masked_array(np.matrix([[1, 2, 3]]), mask=[0, 0, 1])
1299
- assert_equal(test.flat[1], 2)
1300
- assert_equal(test.flat[2], masked)
1301
- self.assertTrue(np.all(test.flat[0:2] == test[0, 0:2]))
1302
- # Test flat on masked_matrices
1303
- test = masked_array(np.matrix([[1, 2, 3]]), mask=[0, 0, 1])
1304
- test.flat = masked_array([3, 2, 1], mask=[1, 0, 0])
1305
- control = masked_array(np.matrix([[3, 2, 1]]), mask=[1, 0, 0])
1306
- assert_equal(test, control)
1307
- # Test setting
1308
- test = masked_array(np.matrix([[1, 2, 3]]), mask=[0, 0, 1])
1309
- testflat = test.flat
1310
- testflat[:] = testflat[[2, 1, 0]]
1311
- assert_equal(test, control)
1312
- testflat[0] = 9
1313
- assert_equal(test[0, 0], 9)
1314
- # test 2-D record array
1315
- # ... on structured array w/ masked records
1316
- x = array([[(1, 1.1, 'one'), (2, 2.2, 'two'), (3, 3.3, 'thr')],
1317
- [(4, 4.4, 'fou'), (5, 5.5, 'fiv'), (6, 6.6, 'six')]],
1318
- dtype=[('a', int), ('b', float), ('c', '|S8')])
1319
- x['a'][0, 1] = masked
1320
- x['b'][1, 0] = masked
1321
- x['c'][0, 2] = masked
1322
- x[-1, -1] = masked
1323
- xflat = x.flat
1324
- assert_equal(xflat[0], x[0, 0])
1325
- assert_equal(xflat[1], x[0, 1])
1326
- assert_equal(xflat[2], x[0, 2])
1327
- assert_equal(xflat[:3], x[0])
1328
- assert_equal(xflat[3], x[1, 0])
1329
- assert_equal(xflat[4], x[1, 1])
1330
- assert_equal(xflat[5], x[1, 2])
1331
- assert_equal(xflat[3:], x[1])
1332
- assert_equal(xflat[-1], x[-1, -1])
1333
- i = 0
1334
- j = 0
1335
- for xf in xflat:
1336
- assert_equal(xf, x[j, i])
1337
- i += 1
1338
- if i >= x.shape[-1]:
1339
- i = 0
1340
- j += 1
1341
- # test that matrices keep the correct shape (#4615)
1342
- a = masked_array(np.matrix(np.eye(2)), mask=0)
1343
- b = a.flat
1344
- b01 = b[:2]
1345
- assert_equal(b01.data, array([[1., 0.]]))
1346
- assert_equal(b01.mask, array([[False, False]]))
1347
-
1348
-
1349
- #------------------------------------------------------------------------------
1350
- class TestFillingValues(TestCase):
1351
-
1352
- def test_check_on_scalar(self):
1353
- # Test _check_fill_value set to valid and invalid values
1354
- _check_fill_value = np.ma.core._check_fill_value
1355
- #
1356
- fval = _check_fill_value(0, int)
1357
- assert_equal(fval, 0)
1358
- fval = _check_fill_value(None, int)
1359
- assert_equal(fval, default_fill_value(0))
1360
- #
1361
- fval = _check_fill_value(0, "|S3")
1362
- assert_equal(fval, asbytes("0"))
1363
- fval = _check_fill_value(None, "|S3")
1364
- assert_equal(fval, default_fill_value("|S3"))
1365
- self.assertRaises(TypeError, _check_fill_value, 1e+20, int)
1366
- self.assertRaises(TypeError, _check_fill_value, 'stuff', int)
1367
-
1368
- def test_check_on_fields(self):
1369
- # Tests _check_fill_value with records
1370
- _check_fill_value = np.ma.core._check_fill_value
1371
- ndtype = [('a', int), ('b', float), ('c', "|S3")]
1372
- # A check on a list should return a single record
1373
- fval = _check_fill_value([-999, -12345678.9, "???"], ndtype)
1374
- self.assertTrue(isinstance(fval, ndarray))
1375
- assert_equal(fval.item(), [-999, -12345678.9, asbytes("???")])
1376
- # A check on None should output the defaults
1377
- fval = _check_fill_value(None, ndtype)
1378
- self.assertTrue(isinstance(fval, ndarray))
1379
- assert_equal(fval.item(), [default_fill_value(0),
1380
- default_fill_value(0.),
1381
- asbytes(default_fill_value("0"))])
1382
- #.....Using a structured type as fill_value should work
1383
- fill_val = np.array((-999, -12345678.9, "???"), dtype=ndtype)
1384
- fval = _check_fill_value(fill_val, ndtype)
1385
- self.assertTrue(isinstance(fval, ndarray))
1386
- assert_equal(fval.item(), [-999, -12345678.9, asbytes("???")])
1387
-
1388
- #.....Using a flexible type w/ a different type shouldn't matter
1389
- # BEHAVIOR in 1.5 and earlier: match structured types by position
1390
- #fill_val = np.array((-999, -12345678.9, "???"),
1391
- # dtype=[("A", int), ("B", float), ("C", "|S3")])
1392
- # BEHAVIOR in 1.6 and later: match structured types by name
1393
- fill_val = np.array(("???", -999, -12345678.9),
1394
- dtype=[("c", "|S3"), ("a", int), ("b", float), ])
1395
- fval = _check_fill_value(fill_val, ndtype)
1396
- self.assertTrue(isinstance(fval, ndarray))
1397
- assert_equal(fval.item(), [-999, -12345678.9, asbytes("???")])
1398
-
1399
- #.....Using an object-array shouldn't matter either
1400
- fill_val = np.ndarray(shape=(1,), dtype=object)
1401
- fill_val[0] = (-999, -12345678.9, asbytes("???"))
1402
- fval = _check_fill_value(fill_val, object)
1403
- self.assertTrue(isinstance(fval, ndarray))
1404
- assert_equal(fval.item(), [-999, -12345678.9, asbytes("???")])
1405
- # NOTE: This test was never run properly as "fill_value" rather than
1406
- # "fill_val" was assigned. Written properly, it fails.
1407
- #fill_val = np.array((-999, -12345678.9, "???"))
1408
- #fval = _check_fill_value(fill_val, ndtype)
1409
- #self.assertTrue(isinstance(fval, ndarray))
1410
- #assert_equal(fval.item(), [-999, -12345678.9, asbytes("???")])
1411
- #.....One-field-only flexible type should work as well
1412
- ndtype = [("a", int)]
1413
- fval = _check_fill_value(-999999999, ndtype)
1414
- self.assertTrue(isinstance(fval, ndarray))
1415
- assert_equal(fval.item(), (-999999999,))
1416
-
1417
- def test_fillvalue_conversion(self):
1418
- # Tests the behavior of fill_value during conversion
1419
- # We had a tailored comment to make sure special attributes are
1420
- # properly dealt with
1421
- a = array(asbytes_nested(['3', '4', '5']))
1422
- a._optinfo.update({'comment':"updated!"})
1423
- #
1424
- b = array(a, dtype=int)
1425
- assert_equal(b._data, [3, 4, 5])
1426
- assert_equal(b.fill_value, default_fill_value(0))
1427
- #
1428
- b = array(a, dtype=float)
1429
- assert_equal(b._data, [3, 4, 5])
1430
- assert_equal(b.fill_value, default_fill_value(0.))
1431
- #
1432
- b = a.astype(int)
1433
- assert_equal(b._data, [3, 4, 5])
1434
- assert_equal(b.fill_value, default_fill_value(0))
1435
- assert_equal(b._optinfo['comment'], "updated!")
1436
- #
1437
- b = a.astype([('a', '|S3')])
1438
- assert_equal(b['a']._data, a._data)
1439
- assert_equal(b['a'].fill_value, a.fill_value)
1440
-
1441
- def test_fillvalue(self):
1442
- # Yet more fun with the fill_value
1443
- data = masked_array([1, 2, 3], fill_value=-999)
1444
- series = data[[0, 2, 1]]
1445
- assert_equal(series._fill_value, data._fill_value)
1446
- #
1447
- mtype = [('f', float), ('s', '|S3')]
1448
- x = array([(1, 'a'), (2, 'b'), (pi, 'pi')], dtype=mtype)
1449
- x.fill_value = 999
1450
- assert_equal(x.fill_value.item(), [999., asbytes('999')])
1451
- assert_equal(x['f'].fill_value, 999)
1452
- assert_equal(x['s'].fill_value, asbytes('999'))
1453
- #
1454
- x.fill_value = (9, '???')
1455
- assert_equal(x.fill_value.item(), (9, asbytes('???')))
1456
- assert_equal(x['f'].fill_value, 9)
1457
- assert_equal(x['s'].fill_value, asbytes('???'))
1458
- #
1459
- x = array([1, 2, 3.1])
1460
- x.fill_value = 999
1461
- assert_equal(np.asarray(x.fill_value).dtype, float)
1462
- assert_equal(x.fill_value, 999.)
1463
- assert_equal(x._fill_value, np.array(999.))
1464
-
1465
- def test_fillvalue_exotic_dtype(self):
1466
- # Tests yet more exotic flexible dtypes
1467
- _check_fill_value = np.ma.core._check_fill_value
1468
- ndtype = [('i', int), ('s', '|S8'), ('f', float)]
1469
- control = np.array((default_fill_value(0),
1470
- default_fill_value('0'),
1471
- default_fill_value(0.),),
1472
- dtype=ndtype)
1473
- assert_equal(_check_fill_value(None, ndtype), control)
1474
- # The shape shouldn't matter
1475
- ndtype = [('f0', float, (2, 2))]
1476
- control = np.array((default_fill_value(0.),),
1477
- dtype=[('f0', float)]).astype(ndtype)
1478
- assert_equal(_check_fill_value(None, ndtype), control)
1479
- control = np.array((0,), dtype=[('f0', float)]).astype(ndtype)
1480
- assert_equal(_check_fill_value(0, ndtype), control)
1481
- #
1482
- ndtype = np.dtype("int, (2,3)float, float")
1483
- control = np.array((default_fill_value(0),
1484
- default_fill_value(0.),
1485
- default_fill_value(0.),),
1486
- dtype="int, float, float").astype(ndtype)
1487
- test = _check_fill_value(None, ndtype)
1488
- assert_equal(test, control)
1489
- control = np.array((0, 0, 0), dtype="int, float, float").astype(ndtype)
1490
- assert_equal(_check_fill_value(0, ndtype), control)
1491
-
1492
- def test_fillvalue_datetime_timedelta(self):
1493
- # Test default fillvalue for datetime64 and timedelta64 types.
1494
- # See issue #4476, this would return '?' which would cause errors
1495
- # elsewhere
1496
-
1497
- for timecode in ("as", "fs", "ps", "ns", "us", "ms", "s", "m",
1498
- "h", "D", "W", "M", "Y"):
1499
- control = numpy.datetime64("NaT", timecode)
1500
- test = default_fill_value(numpy.dtype("<M8[" + timecode + "]"))
1501
- assert_equal(test, control)
1502
-
1503
- control = numpy.timedelta64("NaT", timecode)
1504
- test = default_fill_value(numpy.dtype("<m8[" + timecode + "]"))
1505
- assert_equal(test, control)
1506
-
1507
- def test_extremum_fill_value(self):
1508
- # Tests extremum fill values for flexible type.
1509
- a = array([(1, (2, 3)), (4, (5, 6))],
1510
- dtype=[('A', int), ('B', [('BA', int), ('BB', int)])])
1511
- test = a.fill_value
1512
- assert_equal(test['A'], default_fill_value(a['A']))
1513
- assert_equal(test['B']['BA'], default_fill_value(a['B']['BA']))
1514
- assert_equal(test['B']['BB'], default_fill_value(a['B']['BB']))
1515
- #
1516
- test = minimum_fill_value(a)
1517
- assert_equal(test[0], minimum_fill_value(a['A']))
1518
- assert_equal(test[1][0], minimum_fill_value(a['B']['BA']))
1519
- assert_equal(test[1][1], minimum_fill_value(a['B']['BB']))
1520
- assert_equal(test[1], minimum_fill_value(a['B']))
1521
- #
1522
- test = maximum_fill_value(a)
1523
- assert_equal(test[0], maximum_fill_value(a['A']))
1524
- assert_equal(test[1][0], maximum_fill_value(a['B']['BA']))
1525
- assert_equal(test[1][1], maximum_fill_value(a['B']['BB']))
1526
- assert_equal(test[1], maximum_fill_value(a['B']))
1527
-
1528
- def test_fillvalue_individual_fields(self):
1529
- # Test setting fill_value on individual fields
1530
- ndtype = [('a', int), ('b', int)]
1531
- # Explicit fill_value
1532
- a = array(list(zip([1, 2, 3], [4, 5, 6])),
1533
- fill_value=(-999, -999), dtype=ndtype)
1534
- aa = a['a']
1535
- aa.set_fill_value(10)
1536
- assert_equal(aa._fill_value, np.array(10))
1537
- assert_equal(tuple(a.fill_value), (10, -999))
1538
- a.fill_value['b'] = -10
1539
- assert_equal(tuple(a.fill_value), (10, -10))
1540
- # Implicit fill_value
1541
- t = array(list(zip([1, 2, 3], [4, 5, 6])), dtype=ndtype)
1542
- tt = t['a']
1543
- tt.set_fill_value(10)
1544
- assert_equal(tt._fill_value, np.array(10))
1545
- assert_equal(tuple(t.fill_value), (10, default_fill_value(0)))
1546
-
1547
- def test_fillvalue_implicit_structured_array(self):
1548
- # Check that fill_value is always defined for structured arrays
1549
- ndtype = ('b', float)
1550
- adtype = ('a', float)
1551
- a = array([(1.,), (2.,)], mask=[(False,), (False,)],
1552
- fill_value=(np.nan,), dtype=np.dtype([adtype]))
1553
- b = empty(a.shape, dtype=[adtype, ndtype])
1554
- b['a'] = a['a']
1555
- b['a'].set_fill_value(a['a'].fill_value)
1556
- f = b._fill_value[()]
1557
- assert_(np.isnan(f[0]))
1558
- assert_equal(f[-1], default_fill_value(1.))
1559
-
1560
- def test_fillvalue_as_arguments(self):
1561
- # Test adding a fill_value parameter to empty/ones/zeros
1562
- a = empty(3, fill_value=999.)
1563
- assert_equal(a.fill_value, 999.)
1564
- #
1565
- a = ones(3, fill_value=999., dtype=float)
1566
- assert_equal(a.fill_value, 999.)
1567
- #
1568
- a = zeros(3, fill_value=0., dtype=complex)
1569
- assert_equal(a.fill_value, 0.)
1570
- #
1571
- a = identity(3, fill_value=0., dtype=complex)
1572
- assert_equal(a.fill_value, 0.)
1573
-
1574
- def test_fillvalue_in_view(self):
1575
- # Test the behavior of fill_value in view
1576
-
1577
- # Create initial masked array
1578
- x = array([1, 2, 3], fill_value=1, dtype=np.int64)
1579
-
1580
- # Check that fill_value is preserved by default
1581
- y = x.view()
1582
- assert_(y.fill_value == 1)
1583
-
1584
- # Check that fill_value is preserved if dtype is specified and the
1585
- # dtype is an ndarray sub-class and has a _fill_value attribute
1586
- y = x.view(MaskedArray)
1587
- assert_(y.fill_value == 1)
1588
-
1589
- # Check that fill_value is preserved if type is specified and the
1590
- # dtype is an ndarray sub-class and has a _fill_value attribute (by
1591
- # default, the first argument is dtype, not type)
1592
- y = x.view(type=MaskedArray)
1593
- assert_(y.fill_value == 1)
1594
-
1595
- # Check that code does not crash if passed an ndarray sub-class that
1596
- # does not have a _fill_value attribute
1597
- y = x.view(np.ndarray)
1598
- y = x.view(type=np.ndarray)
1599
-
1600
- # Check that fill_value can be overriden with view
1601
- y = x.view(MaskedArray, fill_value=2)
1602
- assert_(y.fill_value == 2)
1603
-
1604
- # Check that fill_value can be overriden with view (using type=)
1605
- y = x.view(type=MaskedArray, fill_value=2)
1606
- assert_(y.fill_value == 2)
1607
-
1608
- # Check that fill_value gets reset if passed a dtype but not a
1609
- # fill_value. This is because even though in some cases one can safely
1610
- # cast the fill_value, e.g. if taking an int64 view of an int32 array,
1611
- # in other cases, this cannot be done (e.g. int32 view of an int64
1612
- # array with a large fill_value).
1613
- y = x.view(dtype=np.int32)
1614
- assert_(y.fill_value == 999999)
1615
-
1616
-
1617
- #------------------------------------------------------------------------------
1618
- class TestUfuncs(TestCase):
1619
- # Test class for the application of ufuncs on MaskedArrays.
1620
-
1621
- def setUp(self):
1622
- # Base data definition.
1623
- self.d = (array([1.0, 0, -1, pi / 2] * 2, mask=[0, 1] + [0] * 6),
1624
- array([1.0, 0, -1, pi / 2] * 2, mask=[1, 0] + [0] * 6),)
1625
- self.err_status = np.geterr()
1626
- np.seterr(divide='ignore', invalid='ignore')
1627
-
1628
- def tearDown(self):
1629
- np.seterr(**self.err_status)
1630
-
1631
- def test_testUfuncRegression(self):
1632
- # Tests new ufuncs on MaskedArrays.
1633
- for f in ['sqrt', 'log', 'log10', 'exp', 'conjugate',
1634
- 'sin', 'cos', 'tan',
1635
- 'arcsin', 'arccos', 'arctan',
1636
- 'sinh', 'cosh', 'tanh',
1637
- 'arcsinh',
1638
- 'arccosh',
1639
- 'arctanh',
1640
- 'absolute', 'fabs', 'negative',
1641
- # 'nonzero', 'around',
1642
- 'floor', 'ceil',
1643
- # 'sometrue', 'alltrue',
1644
- 'logical_not',
1645
- 'add', 'subtract', 'multiply',
1646
- 'divide', 'true_divide', 'floor_divide',
1647
- 'remainder', 'fmod', 'hypot', 'arctan2',
1648
- 'equal', 'not_equal', 'less_equal', 'greater_equal',
1649
- 'less', 'greater',
1650
- 'logical_and', 'logical_or', 'logical_xor',
1651
- ]:
1652
- try:
1653
- uf = getattr(umath, f)
1654
- except AttributeError:
1655
- uf = getattr(fromnumeric, f)
1656
- mf = getattr(numpy.ma.core, f)
1657
- args = self.d[:uf.nin]
1658
- ur = uf(*args)
1659
- mr = mf(*args)
1660
- assert_equal(ur.filled(0), mr.filled(0), f)
1661
- assert_mask_equal(ur.mask, mr.mask, err_msg=f)
1662
-
1663
- def test_reduce(self):
1664
- # Tests reduce on MaskedArrays.
1665
- a = self.d[0]
1666
- self.assertTrue(not alltrue(a, axis=0))
1667
- self.assertTrue(sometrue(a, axis=0))
1668
- assert_equal(sum(a[:3], axis=0), 0)
1669
- assert_equal(product(a, axis=0), 0)
1670
- assert_equal(add.reduce(a), pi)
1671
-
1672
- def test_minmax(self):
1673
- # Tests extrema on MaskedArrays.
1674
- a = arange(1, 13).reshape(3, 4)
1675
- amask = masked_where(a < 5, a)
1676
- assert_equal(amask.max(), a.max())
1677
- assert_equal(amask.min(), 5)
1678
- assert_equal(amask.max(0), a.max(0))
1679
- assert_equal(amask.min(0), [5, 6, 7, 8])
1680
- self.assertTrue(amask.max(1)[0].mask)
1681
- self.assertTrue(amask.min(1)[0].mask)
1682
-
1683
- def test_ndarray_mask(self):
1684
- # Check that the mask of the result is a ndarray (not a MaskedArray...)
1685
- a = masked_array([-1, 0, 1, 2, 3], mask=[0, 0, 0, 0, 1])
1686
- test = np.sqrt(a)
1687
- control = masked_array([-1, 0, 1, np.sqrt(2), -1],
1688
- mask=[1, 0, 0, 0, 1])
1689
- assert_equal(test, control)
1690
- assert_equal(test.mask, control.mask)
1691
- self.assertTrue(not isinstance(test.mask, MaskedArray))
1692
-
1693
- def test_treatment_of_NotImplemented(self):
1694
- # Check any NotImplemented returned by umath.<ufunc> is passed on
1695
- a = masked_array([1., 2.], mask=[1, 0])
1696
- # basic tests for _MaskedBinaryOperation
1697
- assert_(a.__mul__('abc') is NotImplemented)
1698
- assert_(multiply.outer(a, 'abc') is NotImplemented)
1699
- # and for _DomainedBinaryOperation
1700
- assert_(a.__div__('abc') is NotImplemented)
1701
-
1702
- # also check explicitly that rmul of another class can be accessed
1703
- class MyClass(str):
1704
- def __mul__(self, other):
1705
- return "My mul"
1706
-
1707
- def __rmul__(self, other):
1708
- return "My rmul"
1709
-
1710
- me = MyClass()
1711
- assert_(me * a == "My mul")
1712
- assert_(a * me == "My rmul")
1713
-
1714
-
1715
- #------------------------------------------------------------------------------
1716
- class TestMaskedArrayInPlaceArithmetics(TestCase):
1717
- # Test MaskedArray Arithmetics
1718
-
1719
- def setUp(self):
1720
- x = arange(10)
1721
- y = arange(10)
1722
- xm = arange(10)
1723
- xm[2] = masked
1724
- self.intdata = (x, y, xm)
1725
- self.floatdata = (x.astype(float), y.astype(float), xm.astype(float))
1726
-
1727
- def test_inplace_addition_scalar(self):
1728
- # Test of inplace additions
1729
- (x, y, xm) = self.intdata
1730
- xm[2] = masked
1731
- x += 1
1732
- assert_equal(x, y + 1)
1733
- xm += 1
1734
- assert_equal(xm, y + 1)
1735
- #
1736
- (x, _, xm) = self.floatdata
1737
- id1 = x.data.ctypes._data
1738
- x += 1.
1739
- assert_(id1 == x.data.ctypes._data)
1740
- assert_equal(x, y + 1.)
1741
-
1742
- def test_inplace_addition_array(self):
1743
- # Test of inplace additions
1744
- (x, y, xm) = self.intdata
1745
- m = xm.mask
1746
- a = arange(10, dtype=np.int16)
1747
- a[-1] = masked
1748
- x += a
1749
- xm += a
1750
- assert_equal(x, y + a)
1751
- assert_equal(xm, y + a)
1752
- assert_equal(xm.mask, mask_or(m, a.mask))
1753
-
1754
- def test_inplace_subtraction_scalar(self):
1755
- # Test of inplace subtractions
1756
- (x, y, xm) = self.intdata
1757
- x -= 1
1758
- assert_equal(x, y - 1)
1759
- xm -= 1
1760
- assert_equal(xm, y - 1)
1761
-
1762
- def test_inplace_subtraction_array(self):
1763
- # Test of inplace subtractions
1764
- (x, y, xm) = self.floatdata
1765
- m = xm.mask
1766
- a = arange(10, dtype=float)
1767
- a[-1] = masked
1768
- x -= a
1769
- xm -= a
1770
- assert_equal(x, y - a)
1771
- assert_equal(xm, y - a)
1772
- assert_equal(xm.mask, mask_or(m, a.mask))
1773
-
1774
- def test_inplace_multiplication_scalar(self):
1775
- # Test of inplace multiplication
1776
- (x, y, xm) = self.floatdata
1777
- x *= 2.0
1778
- assert_equal(x, y * 2)
1779
- xm *= 2.0
1780
- assert_equal(xm, y * 2)
1781
-
1782
- def test_inplace_multiplication_array(self):
1783
- # Test of inplace multiplication
1784
- (x, y, xm) = self.floatdata
1785
- m = xm.mask
1786
- a = arange(10, dtype=float)
1787
- a[-1] = masked
1788
- x *= a
1789
- xm *= a
1790
- assert_equal(x, y * a)
1791
- assert_equal(xm, y * a)
1792
- assert_equal(xm.mask, mask_or(m, a.mask))
1793
-
1794
- def test_inplace_division_scalar_int(self):
1795
- # Test of inplace division
1796
- (x, y, xm) = self.intdata
1797
- x = arange(10) * 2
1798
- xm = arange(10) * 2
1799
- xm[2] = masked
1800
- x //= 2
1801
- assert_equal(x, y)
1802
- xm //= 2
1803
- assert_equal(xm, y)
1804
-
1805
- def test_inplace_division_scalar_float(self):
1806
- # Test of inplace division
1807
- (x, y, xm) = self.floatdata
1808
- x /= 2.0
1809
- assert_equal(x, y / 2.0)
1810
- xm /= arange(10)
1811
- assert_equal(xm, ones((10,)))
1812
-
1813
- def test_inplace_division_array_float(self):
1814
- # Test of inplace division
1815
- (x, y, xm) = self.floatdata
1816
- m = xm.mask
1817
- a = arange(10, dtype=float)
1818
- a[-1] = masked
1819
- x /= a
1820
- xm /= a
1821
- assert_equal(x, y / a)
1822
- assert_equal(xm, y / a)
1823
- assert_equal(xm.mask, mask_or(mask_or(m, a.mask), (a == 0)))
1824
-
1825
- def test_inplace_division_misc(self):
1826
- #
1827
- x = [1., 1., 1., -2., pi / 2., 4., 5., -10., 10., 1., 2., 3.]
1828
- y = [5., 0., 3., 2., -1., -4., 0., -10., 10., 1., 0., 3.]
1829
- m1 = [1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0]
1830
- m2 = [0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 1]
1831
- xm = masked_array(x, mask=m1)
1832
- ym = masked_array(y, mask=m2)
1833
- #
1834
- z = xm / ym
1835
- assert_equal(z._mask, [1, 1, 1, 0, 0, 1, 1, 0, 0, 0, 1, 1])
1836
- assert_equal(z._data,
1837
- [1., 1., 1., -1., -pi / 2., 4., 5., 1., 1., 1., 2., 3.])
1838
- #assert_equal(z._data, [0.2,1.,1./3.,-1.,-pi/2.,-1.,5.,1.,1.,1.,2.,1.])
1839
- #
1840
- xm = xm.copy()
1841
- xm /= ym
1842
- assert_equal(xm._mask, [1, 1, 1, 0, 0, 1, 1, 0, 0, 0, 1, 1])
1843
- assert_equal(z._data,
1844
- [1., 1., 1., -1., -pi / 2., 4., 5., 1., 1., 1., 2., 3.])
1845
- #assert_equal(xm._data,
1846
- # [1/5.,1.,1./3.,-1.,-pi/2.,-1.,5.,1.,1.,1.,2.,1.])
1847
-
1848
- def test_datafriendly_add(self):
1849
- # Test keeping data w/ (inplace) addition
1850
- x = array([1, 2, 3], mask=[0, 0, 1])
1851
- # Test add w/ scalar
1852
- xx = x + 1
1853
- assert_equal(xx.data, [2, 3, 3])
1854
- assert_equal(xx.mask, [0, 0, 1])
1855
- # Test iadd w/ scalar
1856
- x += 1
1857
- assert_equal(x.data, [2, 3, 3])
1858
- assert_equal(x.mask, [0, 0, 1])
1859
- # Test add w/ array
1860
- x = array([1, 2, 3], mask=[0, 0, 1])
1861
- xx = x + array([1, 2, 3], mask=[1, 0, 0])
1862
- assert_equal(xx.data, [1, 4, 3])
1863
- assert_equal(xx.mask, [1, 0, 1])
1864
- # Test iadd w/ array
1865
- x = array([1, 2, 3], mask=[0, 0, 1])
1866
- x += array([1, 2, 3], mask=[1, 0, 0])
1867
- assert_equal(x.data, [1, 4, 3])
1868
- assert_equal(x.mask, [1, 0, 1])
1869
-
1870
- def test_datafriendly_sub(self):
1871
- # Test keeping data w/ (inplace) subtraction
1872
- # Test sub w/ scalar
1873
- x = array([1, 2, 3], mask=[0, 0, 1])
1874
- xx = x - 1
1875
- assert_equal(xx.data, [0, 1, 3])
1876
- assert_equal(xx.mask, [0, 0, 1])
1877
- # Test isub w/ scalar
1878
- x = array([1, 2, 3], mask=[0, 0, 1])
1879
- x -= 1
1880
- assert_equal(x.data, [0, 1, 3])
1881
- assert_equal(x.mask, [0, 0, 1])
1882
- # Test sub w/ array
1883
- x = array([1, 2, 3], mask=[0, 0, 1])
1884
- xx = x - array([1, 2, 3], mask=[1, 0, 0])
1885
- assert_equal(xx.data, [1, 0, 3])
1886
- assert_equal(xx.mask, [1, 0, 1])
1887
- # Test isub w/ array
1888
- x = array([1, 2, 3], mask=[0, 0, 1])
1889
- x -= array([1, 2, 3], mask=[1, 0, 0])
1890
- assert_equal(x.data, [1, 0, 3])
1891
- assert_equal(x.mask, [1, 0, 1])
1892
-
1893
- def test_datafriendly_mul(self):
1894
- # Test keeping data w/ (inplace) multiplication
1895
- # Test mul w/ scalar
1896
- x = array([1, 2, 3], mask=[0, 0, 1])
1897
- xx = x * 2
1898
- assert_equal(xx.data, [2, 4, 3])
1899
- assert_equal(xx.mask, [0, 0, 1])
1900
- # Test imul w/ scalar
1901
- x = array([1, 2, 3], mask=[0, 0, 1])
1902
- x *= 2
1903
- assert_equal(x.data, [2, 4, 3])
1904
- assert_equal(x.mask, [0, 0, 1])
1905
- # Test mul w/ array
1906
- x = array([1, 2, 3], mask=[0, 0, 1])
1907
- xx = x * array([10, 20, 30], mask=[1, 0, 0])
1908
- assert_equal(xx.data, [1, 40, 3])
1909
- assert_equal(xx.mask, [1, 0, 1])
1910
- # Test imul w/ array
1911
- x = array([1, 2, 3], mask=[0, 0, 1])
1912
- x *= array([10, 20, 30], mask=[1, 0, 0])
1913
- assert_equal(x.data, [1, 40, 3])
1914
- assert_equal(x.mask, [1, 0, 1])
1915
-
1916
- def test_datafriendly_div(self):
1917
- # Test keeping data w/ (inplace) division
1918
- # Test div on scalar
1919
- x = array([1, 2, 3], mask=[0, 0, 1])
1920
- xx = x / 2.
1921
- assert_equal(xx.data, [1 / 2., 2 / 2., 3])
1922
- assert_equal(xx.mask, [0, 0, 1])
1923
- # Test idiv on scalar
1924
- x = array([1., 2., 3.], mask=[0, 0, 1])
1925
- x /= 2.
1926
- assert_equal(x.data, [1 / 2., 2 / 2., 3])
1927
- assert_equal(x.mask, [0, 0, 1])
1928
- # Test div on array
1929
- x = array([1., 2., 3.], mask=[0, 0, 1])
1930
- xx = x / array([10., 20., 30.], mask=[1, 0, 0])
1931
- assert_equal(xx.data, [1., 2. / 20., 3.])
1932
- assert_equal(xx.mask, [1, 0, 1])
1933
- # Test idiv on array
1934
- x = array([1., 2., 3.], mask=[0, 0, 1])
1935
- x /= array([10., 20., 30.], mask=[1, 0, 0])
1936
- assert_equal(x.data, [1., 2 / 20., 3.])
1937
- assert_equal(x.mask, [1, 0, 1])
1938
-
1939
- def test_datafriendly_pow(self):
1940
- # Test keeping data w/ (inplace) power
1941
- # Test pow on scalar
1942
- x = array([1., 2., 3.], mask=[0, 0, 1])
1943
- xx = x ** 2.5
1944
- assert_equal(xx.data, [1., 2. ** 2.5, 3.])
1945
- assert_equal(xx.mask, [0, 0, 1])
1946
- # Test ipow on scalar
1947
- x **= 2.5
1948
- assert_equal(x.data, [1., 2. ** 2.5, 3])
1949
- assert_equal(x.mask, [0, 0, 1])
1950
-
1951
- def test_datafriendly_add_arrays(self):
1952
- a = array([[1, 1], [3, 3]])
1953
- b = array([1, 1], mask=[0, 0])
1954
- a += b
1955
- assert_equal(a, [[2, 2], [4, 4]])
1956
- if a.mask is not nomask:
1957
- assert_equal(a.mask, [[0, 0], [0, 0]])
1958
- #
1959
- a = array([[1, 1], [3, 3]])
1960
- b = array([1, 1], mask=[0, 1])
1961
- a += b
1962
- assert_equal(a, [[2, 2], [4, 4]])
1963
- assert_equal(a.mask, [[0, 1], [0, 1]])
1964
-
1965
- def test_datafriendly_sub_arrays(self):
1966
- a = array([[1, 1], [3, 3]])
1967
- b = array([1, 1], mask=[0, 0])
1968
- a -= b
1969
- assert_equal(a, [[0, 0], [2, 2]])
1970
- if a.mask is not nomask:
1971
- assert_equal(a.mask, [[0, 0], [0, 0]])
1972
- #
1973
- a = array([[1, 1], [3, 3]])
1974
- b = array([1, 1], mask=[0, 1])
1975
- a -= b
1976
- assert_equal(a, [[0, 0], [2, 2]])
1977
- assert_equal(a.mask, [[0, 1], [0, 1]])
1978
-
1979
- def test_datafriendly_mul_arrays(self):
1980
- a = array([[1, 1], [3, 3]])
1981
- b = array([1, 1], mask=[0, 0])
1982
- a *= b
1983
- assert_equal(a, [[1, 1], [3, 3]])
1984
- if a.mask is not nomask:
1985
- assert_equal(a.mask, [[0, 0], [0, 0]])
1986
- #
1987
- a = array([[1, 1], [3, 3]])
1988
- b = array([1, 1], mask=[0, 1])
1989
- a *= b
1990
- assert_equal(a, [[1, 1], [3, 3]])
1991
- assert_equal(a.mask, [[0, 1], [0, 1]])
1992
-
1993
-
1994
- #------------------------------------------------------------------------------
1995
- class TestMaskedArrayMethods(TestCase):
1996
- # Test class for miscellaneous MaskedArrays methods.
1997
- def setUp(self):
1998
- # Base data definition.
1999
- x = np.array([8.375, 7.545, 8.828, 8.5, 1.757, 5.928,
2000
- 8.43, 7.78, 9.865, 5.878, 8.979, 4.732,
2001
- 3.012, 6.022, 5.095, 3.116, 5.238, 3.957,
2002
- 6.04, 9.63, 7.712, 3.382, 4.489, 6.479,
2003
- 7.189, 9.645, 5.395, 4.961, 9.894, 2.893,
2004
- 7.357, 9.828, 6.272, 3.758, 6.693, 0.993])
2005
- X = x.reshape(6, 6)
2006
- XX = x.reshape(3, 2, 2, 3)
2007
-
2008
- m = np.array([0, 1, 0, 1, 0, 0,
2009
- 1, 0, 1, 1, 0, 1,
2010
- 0, 0, 0, 1, 0, 1,
2011
- 0, 0, 0, 1, 1, 1,
2012
- 1, 0, 0, 1, 0, 0,
2013
- 0, 0, 1, 0, 1, 0])
2014
- mx = array(data=x, mask=m)
2015
- mX = array(data=X, mask=m.reshape(X.shape))
2016
- mXX = array(data=XX, mask=m.reshape(XX.shape))
2017
-
2018
- m2 = np.array([1, 1, 0, 1, 0, 0,
2019
- 1, 1, 1, 1, 0, 1,
2020
- 0, 0, 1, 1, 0, 1,
2021
- 0, 0, 0, 1, 1, 1,
2022
- 1, 0, 0, 1, 1, 0,
2023
- 0, 0, 1, 0, 1, 1])
2024
- m2x = array(data=x, mask=m2)
2025
- m2X = array(data=X, mask=m2.reshape(X.shape))
2026
- m2XX = array(data=XX, mask=m2.reshape(XX.shape))
2027
- self.d = (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX)
2028
-
2029
- def test_generic_methods(self):
2030
- # Tests some MaskedArray methods.
2031
- a = array([1, 3, 2])
2032
- assert_equal(a.any(), a._data.any())
2033
- assert_equal(a.all(), a._data.all())
2034
- assert_equal(a.argmax(), a._data.argmax())
2035
- assert_equal(a.argmin(), a._data.argmin())
2036
- assert_equal(a.choose(0, 1, 2, 3, 4), a._data.choose(0, 1, 2, 3, 4))
2037
- assert_equal(a.compress([1, 0, 1]), a._data.compress([1, 0, 1]))
2038
- assert_equal(a.conj(), a._data.conj())
2039
- assert_equal(a.conjugate(), a._data.conjugate())
2040
- #
2041
- m = array([[1, 2], [3, 4]])
2042
- assert_equal(m.diagonal(), m._data.diagonal())
2043
- assert_equal(a.sum(), a._data.sum())
2044
- assert_equal(a.take([1, 2]), a._data.take([1, 2]))
2045
- assert_equal(m.transpose(), m._data.transpose())
2046
-
2047
- def test_allclose(self):
2048
- # Tests allclose on arrays
2049
- a = np.random.rand(10)
2050
- b = a + np.random.rand(10) * 1e-8
2051
- self.assertTrue(allclose(a, b))
2052
- # Test allclose w/ infs
2053
- a[0] = np.inf
2054
- self.assertTrue(not allclose(a, b))
2055
- b[0] = np.inf
2056
- self.assertTrue(allclose(a, b))
2057
- # Test all close w/ masked
2058
- a = masked_array(a)
2059
- a[-1] = masked
2060
- self.assertTrue(allclose(a, b, masked_equal=True))
2061
- self.assertTrue(not allclose(a, b, masked_equal=False))
2062
- # Test comparison w/ scalar
2063
- a *= 1e-8
2064
- a[0] = 0
2065
- self.assertTrue(allclose(a, 0, masked_equal=True))
2066
-
2067
- # Test that the function works for MIN_INT integer typed arrays
2068
- a = masked_array([np.iinfo(np.int_).min], dtype=np.int_)
2069
- self.assertTrue(allclose(a, a))
2070
-
2071
- def test_allany(self):
2072
- # Checks the any/all methods/functions.
2073
- x = np.array([[0.13, 0.26, 0.90],
2074
- [0.28, 0.33, 0.63],
2075
- [0.31, 0.87, 0.70]])
2076
- m = np.array([[True, False, False],
2077
- [False, False, False],
2078
- [True, True, False]], dtype=np.bool_)
2079
- mx = masked_array(x, mask=m)
2080
- mxbig = (mx > 0.5)
2081
- mxsmall = (mx < 0.5)
2082
- #
2083
- self.assertFalse(mxbig.all())
2084
- self.assertTrue(mxbig.any())
2085
- assert_equal(mxbig.all(0), [False, False, True])
2086
- assert_equal(mxbig.all(1), [False, False, True])
2087
- assert_equal(mxbig.any(0), [False, False, True])
2088
- assert_equal(mxbig.any(1), [True, True, True])
2089
- #
2090
- self.assertFalse(mxsmall.all())
2091
- self.assertTrue(mxsmall.any())
2092
- assert_equal(mxsmall.all(0), [True, True, False])
2093
- assert_equal(mxsmall.all(1), [False, False, False])
2094
- assert_equal(mxsmall.any(0), [True, True, False])
2095
- assert_equal(mxsmall.any(1), [True, True, False])
2096
-
2097
- def test_allany_onmatrices(self):
2098
- x = np.array([[0.13, 0.26, 0.90],
2099
- [0.28, 0.33, 0.63],
2100
- [0.31, 0.87, 0.70]])
2101
- X = np.matrix(x)
2102
- m = np.array([[True, False, False],
2103
- [False, False, False],
2104
- [True, True, False]], dtype=np.bool_)
2105
- mX = masked_array(X, mask=m)
2106
- mXbig = (mX > 0.5)
2107
- mXsmall = (mX < 0.5)
2108
- #
2109
- self.assertFalse(mXbig.all())
2110
- self.assertTrue(mXbig.any())
2111
- assert_equal(mXbig.all(0), np.matrix([False, False, True]))
2112
- assert_equal(mXbig.all(1), np.matrix([False, False, True]).T)
2113
- assert_equal(mXbig.any(0), np.matrix([False, False, True]))
2114
- assert_equal(mXbig.any(1), np.matrix([True, True, True]).T)
2115
- #
2116
- self.assertFalse(mXsmall.all())
2117
- self.assertTrue(mXsmall.any())
2118
- assert_equal(mXsmall.all(0), np.matrix([True, True, False]))
2119
- assert_equal(mXsmall.all(1), np.matrix([False, False, False]).T)
2120
- assert_equal(mXsmall.any(0), np.matrix([True, True, False]))
2121
- assert_equal(mXsmall.any(1), np.matrix([True, True, False]).T)
2122
-
2123
- def test_allany_oddities(self):
2124
- # Some fun with all and any
2125
- store = empty((), dtype=bool)
2126
- full = array([1, 2, 3], mask=True)
2127
- #
2128
- self.assertTrue(full.all() is masked)
2129
- full.all(out=store)
2130
- self.assertTrue(store)
2131
- self.assertTrue(store._mask, True)
2132
- self.assertTrue(store is not masked)
2133
- #
2134
- store = empty((), dtype=bool)
2135
- self.assertTrue(full.any() is masked)
2136
- full.any(out=store)
2137
- self.assertTrue(not store)
2138
- self.assertTrue(store._mask, True)
2139
- self.assertTrue(store is not masked)
2140
-
2141
- def test_argmax_argmin(self):
2142
- # Tests argmin & argmax on MaskedArrays.
2143
- (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX) = self.d
2144
- #
2145
- assert_equal(mx.argmin(), 35)
2146
- assert_equal(mX.argmin(), 35)
2147
- assert_equal(m2x.argmin(), 4)
2148
- assert_equal(m2X.argmin(), 4)
2149
- assert_equal(mx.argmax(), 28)
2150
- assert_equal(mX.argmax(), 28)
2151
- assert_equal(m2x.argmax(), 31)
2152
- assert_equal(m2X.argmax(), 31)
2153
- #
2154
- assert_equal(mX.argmin(0), [2, 2, 2, 5, 0, 5])
2155
- assert_equal(m2X.argmin(0), [2, 2, 4, 5, 0, 4])
2156
- assert_equal(mX.argmax(0), [0, 5, 0, 5, 4, 0])
2157
- assert_equal(m2X.argmax(0), [5, 5, 0, 5, 1, 0])
2158
- #
2159
- assert_equal(mX.argmin(1), [4, 1, 0, 0, 5, 5, ])
2160
- assert_equal(m2X.argmin(1), [4, 4, 0, 0, 5, 3])
2161
- assert_equal(mX.argmax(1), [2, 4, 1, 1, 4, 1])
2162
- assert_equal(m2X.argmax(1), [2, 4, 1, 1, 1, 1])
2163
-
2164
- def test_clip(self):
2165
- # Tests clip on MaskedArrays.
2166
- x = np.array([8.375, 7.545, 8.828, 8.5, 1.757, 5.928,
2167
- 8.43, 7.78, 9.865, 5.878, 8.979, 4.732,
2168
- 3.012, 6.022, 5.095, 3.116, 5.238, 3.957,
2169
- 6.04, 9.63, 7.712, 3.382, 4.489, 6.479,
2170
- 7.189, 9.645, 5.395, 4.961, 9.894, 2.893,
2171
- 7.357, 9.828, 6.272, 3.758, 6.693, 0.993])
2172
- m = np.array([0, 1, 0, 1, 0, 0, 1, 0, 1, 1, 0, 1,
2173
- 0, 0, 0, 1, 0, 1, 0, 0, 0, 1, 1, 1,
2174
- 1, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 0])
2175
- mx = array(x, mask=m)
2176
- clipped = mx.clip(2, 8)
2177
- assert_equal(clipped.mask, mx.mask)
2178
- assert_equal(clipped._data, x.clip(2, 8))
2179
- assert_equal(clipped._data, mx._data.clip(2, 8))
2180
-
2181
- def test_compress(self):
2182
- # test compress
2183
- a = masked_array([1., 2., 3., 4., 5.], fill_value=9999)
2184
- condition = (a > 1.5) & (a < 3.5)
2185
- assert_equal(a.compress(condition), [2., 3.])
2186
- #
2187
- a[[2, 3]] = masked
2188
- b = a.compress(condition)
2189
- assert_equal(b._data, [2., 3.])
2190
- assert_equal(b._mask, [0, 1])
2191
- assert_equal(b.fill_value, 9999)
2192
- assert_equal(b, a[condition])
2193
- #
2194
- condition = (a < 4.)
2195
- b = a.compress(condition)
2196
- assert_equal(b._data, [1., 2., 3.])
2197
- assert_equal(b._mask, [0, 0, 1])
2198
- assert_equal(b.fill_value, 9999)
2199
- assert_equal(b, a[condition])
2200
- #
2201
- a = masked_array([[10, 20, 30], [40, 50, 60]],
2202
- mask=[[0, 0, 1], [1, 0, 0]])
2203
- b = a.compress(a.ravel() >= 22)
2204
- assert_equal(b._data, [30, 40, 50, 60])
2205
- assert_equal(b._mask, [1, 1, 0, 0])
2206
- #
2207
- x = np.array([3, 1, 2])
2208
- b = a.compress(x >= 2, axis=1)
2209
- assert_equal(b._data, [[10, 30], [40, 60]])
2210
- assert_equal(b._mask, [[0, 1], [1, 0]])
2211
-
2212
- def test_compressed(self):
2213
- # Tests compressed
2214
- a = array([1, 2, 3, 4], mask=[0, 0, 0, 0])
2215
- b = a.compressed()
2216
- assert_equal(b, a)
2217
- a[0] = masked
2218
- b = a.compressed()
2219
- assert_equal(b, [2, 3, 4])
2220
- #
2221
- a = array(np.matrix([1, 2, 3, 4]), mask=[0, 0, 0, 0])
2222
- b = a.compressed()
2223
- assert_equal(b, a)
2224
- self.assertTrue(isinstance(b, np.matrix))
2225
- a[0, 0] = masked
2226
- b = a.compressed()
2227
- assert_equal(b, [[2, 3, 4]])
2228
-
2229
- def test_empty(self):
2230
- # Tests empty/like
2231
- datatype = [('a', int), ('b', float), ('c', '|S8')]
2232
- a = masked_array([(1, 1.1, '1.1'), (2, 2.2, '2.2'), (3, 3.3, '3.3')],
2233
- dtype=datatype)
2234
- assert_equal(len(a.fill_value.item()), len(datatype))
2235
- #
2236
- b = empty_like(a)
2237
- assert_equal(b.shape, a.shape)
2238
- assert_equal(b.fill_value, a.fill_value)
2239
- #
2240
- b = empty(len(a), dtype=datatype)
2241
- assert_equal(b.shape, a.shape)
2242
- assert_equal(b.fill_value, a.fill_value)
2243
-
2244
- # check empty_like mask handling
2245
- a = masked_array([1, 2, 3], mask=[False, True, False])
2246
- b = empty_like(a)
2247
- assert_(not np.may_share_memory(a.mask, b.mask))
2248
- b = a.view(masked_array)
2249
- assert_(np.may_share_memory(a.mask, b.mask))
2250
-
2251
- def test_put(self):
2252
- # Tests put.
2253
- d = arange(5)
2254
- n = [0, 0, 0, 1, 1]
2255
- m = make_mask(n)
2256
- x = array(d, mask=m)
2257
- self.assertTrue(x[3] is masked)
2258
- self.assertTrue(x[4] is masked)
2259
- x[[1, 4]] = [10, 40]
2260
- #self.assertTrue(x.mask is not m)
2261
- self.assertTrue(x[3] is masked)
2262
- self.assertTrue(x[4] is not masked)
2263
- assert_equal(x, [0, 10, 2, -1, 40])
2264
- #
2265
- x = masked_array(arange(10), mask=[1, 0, 0, 0, 0] * 2)
2266
- i = [0, 2, 4, 6]
2267
- x.put(i, [6, 4, 2, 0])
2268
- assert_equal(x, asarray([6, 1, 4, 3, 2, 5, 0, 7, 8, 9, ]))
2269
- assert_equal(x.mask, [0, 0, 0, 0, 0, 1, 0, 0, 0, 0])
2270
- x.put(i, masked_array([0, 2, 4, 6], [1, 0, 1, 0]))
2271
- assert_array_equal(x, [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, ])
2272
- assert_equal(x.mask, [1, 0, 0, 0, 1, 1, 0, 0, 0, 0])
2273
- #
2274
- x = masked_array(arange(10), mask=[1, 0, 0, 0, 0] * 2)
2275
- put(x, i, [6, 4, 2, 0])
2276
- assert_equal(x, asarray([6, 1, 4, 3, 2, 5, 0, 7, 8, 9, ]))
2277
- assert_equal(x.mask, [0, 0, 0, 0, 0, 1, 0, 0, 0, 0])
2278
- put(x, i, masked_array([0, 2, 4, 6], [1, 0, 1, 0]))
2279
- assert_array_equal(x, [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, ])
2280
- assert_equal(x.mask, [1, 0, 0, 0, 1, 1, 0, 0, 0, 0])
2281
-
2282
- def test_put_hardmask(self):
2283
- # Tests put on hardmask
2284
- d = arange(5)
2285
- n = [0, 0, 0, 1, 1]
2286
- m = make_mask(n)
2287
- xh = array(d + 1, mask=m, hard_mask=True, copy=True)
2288
- xh.put([4, 2, 0, 1, 3], [1, 2, 3, 4, 5])
2289
- assert_equal(xh._data, [3, 4, 2, 4, 5])
2290
-
2291
- def test_putmask(self):
2292
- x = arange(6) + 1
2293
- mx = array(x, mask=[0, 0, 0, 1, 1, 1])
2294
- mask = [0, 0, 1, 0, 0, 1]
2295
- # w/o mask, w/o masked values
2296
- xx = x.copy()
2297
- putmask(xx, mask, 99)
2298
- assert_equal(xx, [1, 2, 99, 4, 5, 99])
2299
- # w/ mask, w/o masked values
2300
- mxx = mx.copy()
2301
- putmask(mxx, mask, 99)
2302
- assert_equal(mxx._data, [1, 2, 99, 4, 5, 99])
2303
- assert_equal(mxx._mask, [0, 0, 0, 1, 1, 0])
2304
- # w/o mask, w/ masked values
2305
- values = array([10, 20, 30, 40, 50, 60], mask=[1, 1, 1, 0, 0, 0])
2306
- xx = x.copy()
2307
- putmask(xx, mask, values)
2308
- assert_equal(xx._data, [1, 2, 30, 4, 5, 60])
2309
- assert_equal(xx._mask, [0, 0, 1, 0, 0, 0])
2310
- # w/ mask, w/ masked values
2311
- mxx = mx.copy()
2312
- putmask(mxx, mask, values)
2313
- assert_equal(mxx._data, [1, 2, 30, 4, 5, 60])
2314
- assert_equal(mxx._mask, [0, 0, 1, 1, 1, 0])
2315
- # w/ mask, w/ masked values + hardmask
2316
- mxx = mx.copy()
2317
- mxx.harden_mask()
2318
- putmask(mxx, mask, values)
2319
- assert_equal(mxx, [1, 2, 30, 4, 5, 60])
2320
-
2321
- def test_ravel(self):
2322
- # Tests ravel
2323
- a = array([[1, 2, 3, 4, 5]], mask=[[0, 1, 0, 0, 0]])
2324
- aravel = a.ravel()
2325
- assert_equal(aravel._mask.shape, aravel.shape)
2326
- a = array([0, 0], mask=[1, 1])
2327
- aravel = a.ravel()
2328
- assert_equal(aravel._mask.shape, a.shape)
2329
- a = array(np.matrix([1, 2, 3, 4, 5]), mask=[[0, 1, 0, 0, 0]])
2330
- aravel = a.ravel()
2331
- assert_equal(aravel.shape, (1, 5))
2332
- assert_equal(aravel._mask.shape, a.shape)
2333
- # Checks that small_mask is preserved
2334
- a = array([1, 2, 3, 4], mask=[0, 0, 0, 0], shrink=False)
2335
- assert_equal(a.ravel()._mask, [0, 0, 0, 0])
2336
- # Test that the fill_value is preserved
2337
- a.fill_value = -99
2338
- a.shape = (2, 2)
2339
- ar = a.ravel()
2340
- assert_equal(ar._mask, [0, 0, 0, 0])
2341
- assert_equal(ar._data, [1, 2, 3, 4])
2342
- assert_equal(ar.fill_value, -99)
2343
-
2344
- def test_reshape(self):
2345
- # Tests reshape
2346
- x = arange(4)
2347
- x[0] = masked
2348
- y = x.reshape(2, 2)
2349
- assert_equal(y.shape, (2, 2,))
2350
- assert_equal(y._mask.shape, (2, 2,))
2351
- assert_equal(x.shape, (4,))
2352
- assert_equal(x._mask.shape, (4,))
2353
-
2354
- def test_sort(self):
2355
- # Test sort
2356
- x = array([1, 4, 2, 3], mask=[0, 1, 0, 0], dtype=np.uint8)
2357
- #
2358
- sortedx = sort(x)
2359
- assert_equal(sortedx._data, [1, 2, 3, 4])
2360
- assert_equal(sortedx._mask, [0, 0, 0, 1])
2361
- #
2362
- sortedx = sort(x, endwith=False)
2363
- assert_equal(sortedx._data, [4, 1, 2, 3])
2364
- assert_equal(sortedx._mask, [1, 0, 0, 0])
2365
- #
2366
- x.sort()
2367
- assert_equal(x._data, [1, 2, 3, 4])
2368
- assert_equal(x._mask, [0, 0, 0, 1])
2369
- #
2370
- x = array([1, 4, 2, 3], mask=[0, 1, 0, 0], dtype=np.uint8)
2371
- x.sort(endwith=False)
2372
- assert_equal(x._data, [4, 1, 2, 3])
2373
- assert_equal(x._mask, [1, 0, 0, 0])
2374
- #
2375
- x = [1, 4, 2, 3]
2376
- sortedx = sort(x)
2377
- self.assertTrue(not isinstance(sorted, MaskedArray))
2378
- #
2379
- x = array([0, 1, -1, -2, 2], mask=nomask, dtype=np.int8)
2380
- sortedx = sort(x, endwith=False)
2381
- assert_equal(sortedx._data, [-2, -1, 0, 1, 2])
2382
- x = array([0, 1, -1, -2, 2], mask=[0, 1, 0, 0, 1], dtype=np.int8)
2383
- sortedx = sort(x, endwith=False)
2384
- assert_equal(sortedx._data, [1, 2, -2, -1, 0])
2385
- assert_equal(sortedx._mask, [1, 1, 0, 0, 0])
2386
-
2387
- def test_sort_2d(self):
2388
- # Check sort of 2D array.
2389
- # 2D array w/o mask
2390
- a = masked_array([[8, 4, 1], [2, 0, 9]])
2391
- a.sort(0)
2392
- assert_equal(a, [[2, 0, 1], [8, 4, 9]])
2393
- a = masked_array([[8, 4, 1], [2, 0, 9]])
2394
- a.sort(1)
2395
- assert_equal(a, [[1, 4, 8], [0, 2, 9]])
2396
- # 2D array w/mask
2397
- a = masked_array([[8, 4, 1], [2, 0, 9]], mask=[[1, 0, 0], [0, 0, 1]])
2398
- a.sort(0)
2399
- assert_equal(a, [[2, 0, 1], [8, 4, 9]])
2400
- assert_equal(a._mask, [[0, 0, 0], [1, 0, 1]])
2401
- a = masked_array([[8, 4, 1], [2, 0, 9]], mask=[[1, 0, 0], [0, 0, 1]])
2402
- a.sort(1)
2403
- assert_equal(a, [[1, 4, 8], [0, 2, 9]])
2404
- assert_equal(a._mask, [[0, 0, 1], [0, 0, 1]])
2405
- # 3D
2406
- a = masked_array([[[7, 8, 9], [4, 5, 6], [1, 2, 3]],
2407
- [[1, 2, 3], [7, 8, 9], [4, 5, 6]],
2408
- [[7, 8, 9], [1, 2, 3], [4, 5, 6]],
2409
- [[4, 5, 6], [1, 2, 3], [7, 8, 9]]])
2410
- a[a % 4 == 0] = masked
2411
- am = a.copy()
2412
- an = a.filled(99)
2413
- am.sort(0)
2414
- an.sort(0)
2415
- assert_equal(am, an)
2416
- am = a.copy()
2417
- an = a.filled(99)
2418
- am.sort(1)
2419
- an.sort(1)
2420
- assert_equal(am, an)
2421
- am = a.copy()
2422
- an = a.filled(99)
2423
- am.sort(2)
2424
- an.sort(2)
2425
- assert_equal(am, an)
2426
-
2427
- def test_sort_flexible(self):
2428
- # Test sort on flexible dtype.
2429
- a = array(
2430
- data=[(3, 3), (3, 2), (2, 2), (2, 1), (1, 0), (1, 1), (1, 2)],
2431
- mask=[(0, 0), (0, 1), (0, 0), (0, 0), (1, 0), (0, 0), (0, 0)],
2432
- dtype=[('A', int), ('B', int)])
2433
- #
2434
- test = sort(a)
2435
- b = array(
2436
- data=[(1, 1), (1, 2), (2, 1), (2, 2), (3, 3), (3, 2), (1, 0)],
2437
- mask=[(0, 0), (0, 0), (0, 0), (0, 0), (0, 0), (0, 1), (1, 0)],
2438
- dtype=[('A', int), ('B', int)])
2439
- assert_equal(test, b)
2440
- assert_equal(test.mask, b.mask)
2441
- #
2442
- test = sort(a, endwith=False)
2443
- b = array(
2444
- data=[(1, 0), (1, 1), (1, 2), (2, 1), (2, 2), (3, 2), (3, 3), ],
2445
- mask=[(1, 0), (0, 0), (0, 0), (0, 0), (0, 0), (0, 1), (0, 0), ],
2446
- dtype=[('A', int), ('B', int)])
2447
- assert_equal(test, b)
2448
- assert_equal(test.mask, b.mask)
2449
-
2450
- def test_argsort(self):
2451
- # Test argsort
2452
- a = array([1, 5, 2, 4, 3], mask=[1, 0, 0, 1, 0])
2453
- assert_equal(np.argsort(a), argsort(a))
2454
-
2455
- def test_squeeze(self):
2456
- # Check squeeze
2457
- data = masked_array([[1, 2, 3]])
2458
- assert_equal(data.squeeze(), [1, 2, 3])
2459
- data = masked_array([[1, 2, 3]], mask=[[1, 1, 1]])
2460
- assert_equal(data.squeeze(), [1, 2, 3])
2461
- assert_equal(data.squeeze()._mask, [1, 1, 1])
2462
- data = masked_array([[1]], mask=True)
2463
- self.assertTrue(data.squeeze() is masked)
2464
-
2465
- def test_swapaxes(self):
2466
- # Tests swapaxes on MaskedArrays.
2467
- x = np.array([8.375, 7.545, 8.828, 8.5, 1.757, 5.928,
2468
- 8.43, 7.78, 9.865, 5.878, 8.979, 4.732,
2469
- 3.012, 6.022, 5.095, 3.116, 5.238, 3.957,
2470
- 6.04, 9.63, 7.712, 3.382, 4.489, 6.479,
2471
- 7.189, 9.645, 5.395, 4.961, 9.894, 2.893,
2472
- 7.357, 9.828, 6.272, 3.758, 6.693, 0.993])
2473
- m = np.array([0, 1, 0, 1, 0, 0,
2474
- 1, 0, 1, 1, 0, 1,
2475
- 0, 0, 0, 1, 0, 1,
2476
- 0, 0, 0, 1, 1, 1,
2477
- 1, 0, 0, 1, 0, 0,
2478
- 0, 0, 1, 0, 1, 0])
2479
- mX = array(x, mask=m).reshape(6, 6)
2480
- mXX = mX.reshape(3, 2, 2, 3)
2481
- #
2482
- mXswapped = mX.swapaxes(0, 1)
2483
- assert_equal(mXswapped[-1], mX[:, -1])
2484
-
2485
- mXXswapped = mXX.swapaxes(0, 2)
2486
- assert_equal(mXXswapped.shape, (2, 2, 3, 3))
2487
-
2488
- def test_take(self):
2489
- # Tests take
2490
- x = masked_array([10, 20, 30, 40], [0, 1, 0, 1])
2491
- assert_equal(x.take([0, 0, 3]), masked_array([10, 10, 40], [0, 0, 1]))
2492
- assert_equal(x.take([0, 0, 3]), x[[0, 0, 3]])
2493
- assert_equal(x.take([[0, 1], [0, 1]]),
2494
- masked_array([[10, 20], [10, 20]], [[0, 1], [0, 1]]))
2495
- #
2496
- x = array([[10, 20, 30], [40, 50, 60]], mask=[[0, 0, 1], [1, 0, 0, ]])
2497
- assert_equal(x.take([0, 2], axis=1),
2498
- array([[10, 30], [40, 60]], mask=[[0, 1], [1, 0]]))
2499
- assert_equal(take(x, [0, 2], axis=1),
2500
- array([[10, 30], [40, 60]], mask=[[0, 1], [1, 0]]))
2501
-
2502
- def test_take_masked_indices(self):
2503
- # Test take w/ masked indices
2504
- a = np.array((40, 18, 37, 9, 22))
2505
- indices = np.arange(3)[None,:] + np.arange(5)[:, None]
2506
- mindices = array(indices, mask=(indices >= len(a)))
2507
- # No mask
2508
- test = take(a, mindices, mode='clip')
2509
- ctrl = array([[40, 18, 37],
2510
- [18, 37, 9],
2511
- [37, 9, 22],
2512
- [9, 22, 22],
2513
- [22, 22, 22]])
2514
- assert_equal(test, ctrl)
2515
- # Masked indices
2516
- test = take(a, mindices)
2517
- ctrl = array([[40, 18, 37],
2518
- [18, 37, 9],
2519
- [37, 9, 22],
2520
- [9, 22, 40],
2521
- [22, 40, 40]])
2522
- ctrl[3, 2] = ctrl[4, 1] = ctrl[4, 2] = masked
2523
- assert_equal(test, ctrl)
2524
- assert_equal(test.mask, ctrl.mask)
2525
- # Masked input + masked indices
2526
- a = array((40, 18, 37, 9, 22), mask=(0, 1, 0, 0, 0))
2527
- test = take(a, mindices)
2528
- ctrl[0, 1] = ctrl[1, 0] = masked
2529
- assert_equal(test, ctrl)
2530
- assert_equal(test.mask, ctrl.mask)
2531
-
2532
- def test_tolist(self):
2533
- # Tests to list
2534
- # ... on 1D
2535
- x = array(np.arange(12))
2536
- x[[1, -2]] = masked
2537
- xlist = x.tolist()
2538
- self.assertTrue(xlist[1] is None)
2539
- self.assertTrue(xlist[-2] is None)
2540
- # ... on 2D
2541
- x.shape = (3, 4)
2542
- xlist = x.tolist()
2543
- ctrl = [[0, None, 2, 3], [4, 5, 6, 7], [8, 9, None, 11]]
2544
- assert_equal(xlist[0], [0, None, 2, 3])
2545
- assert_equal(xlist[1], [4, 5, 6, 7])
2546
- assert_equal(xlist[2], [8, 9, None, 11])
2547
- assert_equal(xlist, ctrl)
2548
- # ... on structured array w/ masked records
2549
- x = array(list(zip([1, 2, 3],
2550
- [1.1, 2.2, 3.3],
2551
- ['one', 'two', 'thr'])),
2552
- dtype=[('a', int), ('b', float), ('c', '|S8')])
2553
- x[-1] = masked
2554
- assert_equal(x.tolist(),
2555
- [(1, 1.1, asbytes('one')),
2556
- (2, 2.2, asbytes('two')),
2557
- (None, None, None)])
2558
- # ... on structured array w/ masked fields
2559
- a = array([(1, 2,), (3, 4)], mask=[(0, 1), (0, 0)],
2560
- dtype=[('a', int), ('b', int)])
2561
- test = a.tolist()
2562
- assert_equal(test, [[1, None], [3, 4]])
2563
- # ... on mvoid
2564
- a = a[0]
2565
- test = a.tolist()
2566
- assert_equal(test, [1, None])
2567
-
2568
- def test_tolist_specialcase(self):
2569
- # Test mvoid.tolist: make sure we return a standard Python object
2570
- a = array([(0, 1), (2, 3)], dtype=[('a', int), ('b', int)])
2571
- # w/o mask: each entry is a np.void whose elements are standard Python
2572
- for entry in a:
2573
- for item in entry.tolist():
2574
- assert_(not isinstance(item, np.generic))
2575
- # w/ mask: each entry is a ma.void whose elements should be
2576
- # standard Python
2577
- a.mask[0] = (0, 1)
2578
- for entry in a:
2579
- for item in entry.tolist():
2580
- assert_(not isinstance(item, np.generic))
2581
-
2582
- def test_toflex(self):
2583
- # Test the conversion to records
2584
- data = arange(10)
2585
- record = data.toflex()
2586
- assert_equal(record['_data'], data._data)
2587
- assert_equal(record['_mask'], data._mask)
2588
- #
2589
- data[[0, 1, 2, -1]] = masked
2590
- record = data.toflex()
2591
- assert_equal(record['_data'], data._data)
2592
- assert_equal(record['_mask'], data._mask)
2593
- #
2594
- ndtype = [('i', int), ('s', '|S3'), ('f', float)]
2595
- data = array([(i, s, f) for (i, s, f) in zip(np.arange(10),
2596
- 'ABCDEFGHIJKLM',
2597
- np.random.rand(10))],
2598
- dtype=ndtype)
2599
- data[[0, 1, 2, -1]] = masked
2600
- record = data.toflex()
2601
- assert_equal(record['_data'], data._data)
2602
- assert_equal(record['_mask'], data._mask)
2603
- #
2604
- ndtype = np.dtype("int, (2,3)float, float")
2605
- data = array([(i, f, ff) for (i, f, ff) in zip(np.arange(10),
2606
- np.random.rand(10),
2607
- np.random.rand(10))],
2608
- dtype=ndtype)
2609
- data[[0, 1, 2, -1]] = masked
2610
- record = data.toflex()
2611
- assert_equal_records(record['_data'], data._data)
2612
- assert_equal_records(record['_mask'], data._mask)
2613
-
2614
- def test_fromflex(self):
2615
- # Test the reconstruction of a masked_array from a record
2616
- a = array([1, 2, 3])
2617
- test = fromflex(a.toflex())
2618
- assert_equal(test, a)
2619
- assert_equal(test.mask, a.mask)
2620
- #
2621
- a = array([1, 2, 3], mask=[0, 0, 1])
2622
- test = fromflex(a.toflex())
2623
- assert_equal(test, a)
2624
- assert_equal(test.mask, a.mask)
2625
- #
2626
- a = array([(1, 1.), (2, 2.), (3, 3.)], mask=[(1, 0), (0, 0), (0, 1)],
2627
- dtype=[('A', int), ('B', float)])
2628
- test = fromflex(a.toflex())
2629
- assert_equal(test, a)
2630
- assert_equal(test.data, a.data)
2631
-
2632
- def test_arraymethod(self):
2633
- # Test a _arraymethod w/ n argument
2634
- marray = masked_array([[1, 2, 3, 4, 5]], mask=[0, 0, 1, 0, 0])
2635
- control = masked_array([[1], [2], [3], [4], [5]],
2636
- mask=[0, 0, 1, 0, 0])
2637
- assert_equal(marray.T, control)
2638
- assert_equal(marray.transpose(), control)
2639
- #
2640
- assert_equal(MaskedArray.cumsum(marray.T, 0), control.cumsum(0))
2641
-
2642
-
2643
- #------------------------------------------------------------------------------
2644
- class TestMaskedArrayMathMethods(TestCase):
2645
-
2646
- def setUp(self):
2647
- # Base data definition.
2648
- x = np.array([8.375, 7.545, 8.828, 8.5, 1.757, 5.928,
2649
- 8.43, 7.78, 9.865, 5.878, 8.979, 4.732,
2650
- 3.012, 6.022, 5.095, 3.116, 5.238, 3.957,
2651
- 6.04, 9.63, 7.712, 3.382, 4.489, 6.479,
2652
- 7.189, 9.645, 5.395, 4.961, 9.894, 2.893,
2653
- 7.357, 9.828, 6.272, 3.758, 6.693, 0.993])
2654
- X = x.reshape(6, 6)
2655
- XX = x.reshape(3, 2, 2, 3)
2656
-
2657
- m = np.array([0, 1, 0, 1, 0, 0,
2658
- 1, 0, 1, 1, 0, 1,
2659
- 0, 0, 0, 1, 0, 1,
2660
- 0, 0, 0, 1, 1, 1,
2661
- 1, 0, 0, 1, 0, 0,
2662
- 0, 0, 1, 0, 1, 0])
2663
- mx = array(data=x, mask=m)
2664
- mX = array(data=X, mask=m.reshape(X.shape))
2665
- mXX = array(data=XX, mask=m.reshape(XX.shape))
2666
-
2667
- m2 = np.array([1, 1, 0, 1, 0, 0,
2668
- 1, 1, 1, 1, 0, 1,
2669
- 0, 0, 1, 1, 0, 1,
2670
- 0, 0, 0, 1, 1, 1,
2671
- 1, 0, 0, 1, 1, 0,
2672
- 0, 0, 1, 0, 1, 1])
2673
- m2x = array(data=x, mask=m2)
2674
- m2X = array(data=X, mask=m2.reshape(X.shape))
2675
- m2XX = array(data=XX, mask=m2.reshape(XX.shape))
2676
- self.d = (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX)
2677
-
2678
- def test_cumsumprod(self):
2679
- # Tests cumsum & cumprod on MaskedArrays.
2680
- (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX) = self.d
2681
- mXcp = mX.cumsum(0)
2682
- assert_equal(mXcp._data, mX.filled(0).cumsum(0))
2683
- mXcp = mX.cumsum(1)
2684
- assert_equal(mXcp._data, mX.filled(0).cumsum(1))
2685
- #
2686
- mXcp = mX.cumprod(0)
2687
- assert_equal(mXcp._data, mX.filled(1).cumprod(0))
2688
- mXcp = mX.cumprod(1)
2689
- assert_equal(mXcp._data, mX.filled(1).cumprod(1))
2690
-
2691
- def test_cumsumprod_with_output(self):
2692
- # Tests cumsum/cumprod w/ output
2693
- xm = array(np.random.uniform(0, 10, 12)).reshape(3, 4)
2694
- xm[:, 0] = xm[0] = xm[-1, -1] = masked
2695
- #
2696
- for funcname in ('cumsum', 'cumprod'):
2697
- npfunc = getattr(np, funcname)
2698
- xmmeth = getattr(xm, funcname)
2699
-
2700
- # A ndarray as explicit input
2701
- output = np.empty((3, 4), dtype=float)
2702
- output.fill(-9999)
2703
- result = npfunc(xm, axis=0, out=output)
2704
- # ... the result should be the given output
2705
- self.assertTrue(result is output)
2706
- assert_equal(result, xmmeth(axis=0, out=output))
2707
- #
2708
- output = empty((3, 4), dtype=int)
2709
- result = xmmeth(axis=0, out=output)
2710
- self.assertTrue(result is output)
2711
-
2712
- def test_ptp(self):
2713
- # Tests ptp on MaskedArrays.
2714
- (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX) = self.d
2715
- (n, m) = X.shape
2716
- assert_equal(mx.ptp(), mx.compressed().ptp())
2717
- rows = np.zeros(n, np.float)
2718
- cols = np.zeros(m, np.float)
2719
- for k in range(m):
2720
- cols[k] = mX[:, k].compressed().ptp()
2721
- for k in range(n):
2722
- rows[k] = mX[k].compressed().ptp()
2723
- assert_equal(mX.ptp(0), cols)
2724
- assert_equal(mX.ptp(1), rows)
2725
-
2726
- def test_sum_object(self):
2727
- # Test sum on object dtype
2728
- a = masked_array([1, 2, 3], mask=[1, 0, 0], dtype=np.object)
2729
- assert_equal(a.sum(), 5)
2730
- a = masked_array([[1, 2, 3], [4, 5, 6]], dtype=object)
2731
- assert_equal(a.sum(axis=0), [5, 7, 9])
2732
-
2733
- def test_prod_object(self):
2734
- # Test prod on object dtype
2735
- a = masked_array([1, 2, 3], mask=[1, 0, 0], dtype=np.object)
2736
- assert_equal(a.prod(), 2 * 3)
2737
- a = masked_array([[1, 2, 3], [4, 5, 6]], dtype=object)
2738
- assert_equal(a.prod(axis=0), [4, 10, 18])
2739
-
2740
- def test_meananom_object(self):
2741
- # Test mean/anom on object dtype
2742
- a = masked_array([1, 2, 3], dtype=np.object)
2743
- assert_equal(a.mean(), 2)
2744
- assert_equal(a.anom(), [-1, 0, 1])
2745
-
2746
- def test_trace(self):
2747
- # Tests trace on MaskedArrays.
2748
- (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX) = self.d
2749
- mXdiag = mX.diagonal()
2750
- assert_equal(mX.trace(), mX.diagonal().compressed().sum())
2751
- assert_almost_equal(mX.trace(),
2752
- X.trace() - sum(mXdiag.mask * X.diagonal(),
2753
- axis=0))
2754
-
2755
- def test_varstd(self):
2756
- # Tests var & std on MaskedArrays.
2757
- (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX) = self.d
2758
- assert_almost_equal(mX.var(axis=None), mX.compressed().var())
2759
- assert_almost_equal(mX.std(axis=None), mX.compressed().std())
2760
- assert_almost_equal(mX.std(axis=None, ddof=1),
2761
- mX.compressed().std(ddof=1))
2762
- assert_almost_equal(mX.var(axis=None, ddof=1),
2763
- mX.compressed().var(ddof=1))
2764
- assert_equal(mXX.var(axis=3).shape, XX.var(axis=3).shape)
2765
- assert_equal(mX.var().shape, X.var().shape)
2766
- (mXvar0, mXvar1) = (mX.var(axis=0), mX.var(axis=1))
2767
- assert_almost_equal(mX.var(axis=None, ddof=2),
2768
- mX.compressed().var(ddof=2))
2769
- assert_almost_equal(mX.std(axis=None, ddof=2),
2770
- mX.compressed().std(ddof=2))
2771
- for k in range(6):
2772
- assert_almost_equal(mXvar1[k], mX[k].compressed().var())
2773
- assert_almost_equal(mXvar0[k], mX[:, k].compressed().var())
2774
- assert_almost_equal(np.sqrt(mXvar0[k]),
2775
- mX[:, k].compressed().std())
2776
-
2777
- def test_varstd_specialcases(self):
2778
- # Test a special case for var
2779
- nout = np.array(-1, dtype=float)
2780
- mout = array(-1, dtype=float)
2781
- #
2782
- x = array(arange(10), mask=True)
2783
- for methodname in ('var', 'std'):
2784
- method = getattr(x, methodname)
2785
- self.assertTrue(method() is masked)
2786
- self.assertTrue(method(0) is masked)
2787
- self.assertTrue(method(-1) is masked)
2788
- # Using a masked array as explicit output
2789
- with warnings.catch_warnings():
2790
- warnings.simplefilter('ignore')
2791
- _ = method(out=mout)
2792
- self.assertTrue(mout is not masked)
2793
- assert_equal(mout.mask, True)
2794
- # Using a ndarray as explicit output
2795
- with warnings.catch_warnings():
2796
- warnings.simplefilter('ignore')
2797
- _ = method(out=nout)
2798
- self.assertTrue(np.isnan(nout))
2799
- #
2800
- x = array(arange(10), mask=True)
2801
- x[-1] = 9
2802
- for methodname in ('var', 'std'):
2803
- method = getattr(x, methodname)
2804
- self.assertTrue(method(ddof=1) is masked)
2805
- self.assertTrue(method(0, ddof=1) is masked)
2806
- self.assertTrue(method(-1, ddof=1) is masked)
2807
- # Using a masked array as explicit output
2808
- method(out=mout, ddof=1)
2809
- self.assertTrue(mout is not masked)
2810
- assert_equal(mout.mask, True)
2811
- # Using a ndarray as explicit output
2812
- method(out=nout, ddof=1)
2813
- self.assertTrue(np.isnan(nout))
2814
-
2815
- def test_varstd_ddof(self):
2816
- a = array([[1, 1, 0], [1, 1, 0]], mask=[[0, 0, 1], [0, 0, 1]])
2817
- test = a.std(axis=0, ddof=0)
2818
- assert_equal(test.filled(0), [0, 0, 0])
2819
- assert_equal(test.mask, [0, 0, 1])
2820
- test = a.std(axis=0, ddof=1)
2821
- assert_equal(test.filled(0), [0, 0, 0])
2822
- assert_equal(test.mask, [0, 0, 1])
2823
- test = a.std(axis=0, ddof=2)
2824
- assert_equal(test.filled(0), [0, 0, 0])
2825
- assert_equal(test.mask, [1, 1, 1])
2826
-
2827
- def test_diag(self):
2828
- # Test diag
2829
- x = arange(9).reshape((3, 3))
2830
- x[1, 1] = masked
2831
- out = np.diag(x)
2832
- assert_equal(out, [0, 4, 8])
2833
- out = diag(x)
2834
- assert_equal(out, [0, 4, 8])
2835
- assert_equal(out.mask, [0, 1, 0])
2836
- out = diag(out)
2837
- control = array([[0, 0, 0], [0, 4, 0], [0, 0, 8]],
2838
- mask=[[0, 0, 0], [0, 1, 0], [0, 0, 0]])
2839
- assert_equal(out, control)
2840
-
2841
- def test_axis_methods_nomask(self):
2842
- # Test the combination nomask & methods w/ axis
2843
- a = array([[1, 2, 3], [4, 5, 6]])
2844
- #
2845
- assert_equal(a.sum(0), [5, 7, 9])
2846
- assert_equal(a.sum(-1), [6, 15])
2847
- assert_equal(a.sum(1), [6, 15])
2848
- #
2849
- assert_equal(a.prod(0), [4, 10, 18])
2850
- assert_equal(a.prod(-1), [6, 120])
2851
- assert_equal(a.prod(1), [6, 120])
2852
- #
2853
- assert_equal(a.min(0), [1, 2, 3])
2854
- assert_equal(a.min(-1), [1, 4])
2855
- assert_equal(a.min(1), [1, 4])
2856
- #
2857
- assert_equal(a.max(0), [4, 5, 6])
2858
- assert_equal(a.max(-1), [3, 6])
2859
- assert_equal(a.max(1), [3, 6])
2860
-
2861
-
2862
- #------------------------------------------------------------------------------
2863
- class TestMaskedArrayMathMethodsComplex(TestCase):
2864
- # Test class for miscellaneous MaskedArrays methods.
2865
- def setUp(self):
2866
- # Base data definition.
2867
- x = np.array([8.375j, 7.545j, 8.828j, 8.5j, 1.757j, 5.928,
2868
- 8.43, 7.78, 9.865, 5.878, 8.979, 4.732,
2869
- 3.012, 6.022, 5.095, 3.116, 5.238, 3.957,
2870
- 6.04, 9.63, 7.712, 3.382, 4.489, 6.479j,
2871
- 7.189j, 9.645, 5.395, 4.961, 9.894, 2.893,
2872
- 7.357, 9.828, 6.272, 3.758, 6.693, 0.993j])
2873
- X = x.reshape(6, 6)
2874
- XX = x.reshape(3, 2, 2, 3)
2875
-
2876
- m = np.array([0, 1, 0, 1, 0, 0,
2877
- 1, 0, 1, 1, 0, 1,
2878
- 0, 0, 0, 1, 0, 1,
2879
- 0, 0, 0, 1, 1, 1,
2880
- 1, 0, 0, 1, 0, 0,
2881
- 0, 0, 1, 0, 1, 0])
2882
- mx = array(data=x, mask=m)
2883
- mX = array(data=X, mask=m.reshape(X.shape))
2884
- mXX = array(data=XX, mask=m.reshape(XX.shape))
2885
-
2886
- m2 = np.array([1, 1, 0, 1, 0, 0,
2887
- 1, 1, 1, 1, 0, 1,
2888
- 0, 0, 1, 1, 0, 1,
2889
- 0, 0, 0, 1, 1, 1,
2890
- 1, 0, 0, 1, 1, 0,
2891
- 0, 0, 1, 0, 1, 1])
2892
- m2x = array(data=x, mask=m2)
2893
- m2X = array(data=X, mask=m2.reshape(X.shape))
2894
- m2XX = array(data=XX, mask=m2.reshape(XX.shape))
2895
- self.d = (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX)
2896
-
2897
- def test_varstd(self):
2898
- # Tests var & std on MaskedArrays.
2899
- (x, X, XX, m, mx, mX, mXX, m2x, m2X, m2XX) = self.d
2900
- assert_almost_equal(mX.var(axis=None), mX.compressed().var())
2901
- assert_almost_equal(mX.std(axis=None), mX.compressed().std())
2902
- assert_equal(mXX.var(axis=3).shape, XX.var(axis=3).shape)
2903
- assert_equal(mX.var().shape, X.var().shape)
2904
- (mXvar0, mXvar1) = (mX.var(axis=0), mX.var(axis=1))
2905
- assert_almost_equal(mX.var(axis=None, ddof=2),
2906
- mX.compressed().var(ddof=2))
2907
- assert_almost_equal(mX.std(axis=None, ddof=2),
2908
- mX.compressed().std(ddof=2))
2909
- for k in range(6):
2910
- assert_almost_equal(mXvar1[k], mX[k].compressed().var())
2911
- assert_almost_equal(mXvar0[k], mX[:, k].compressed().var())
2912
- assert_almost_equal(np.sqrt(mXvar0[k]),
2913
- mX[:, k].compressed().std())
2914
-
2915
-
2916
- #------------------------------------------------------------------------------
2917
- class TestMaskedArrayFunctions(TestCase):
2918
- # Test class for miscellaneous functions.
2919
-
2920
- def setUp(self):
2921
- x = np.array([1., 1., 1., -2., pi/2.0, 4., 5., -10., 10., 1., 2., 3.])
2922
- y = np.array([5., 0., 3., 2., -1., -4., 0., -10., 10., 1., 0., 3.])
2923
- m1 = [1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0]
2924
- m2 = [0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 1]
2925
- xm = masked_array(x, mask=m1)
2926
- ym = masked_array(y, mask=m2)
2927
- xm.set_fill_value(1e+20)
2928
- self.info = (xm, ym)
2929
-
2930
- def test_masked_where_bool(self):
2931
- x = [1, 2]
2932
- y = masked_where(False, x)
2933
- assert_equal(y, [1, 2])
2934
- assert_equal(y[1], 2)
2935
-
2936
- def test_masked_equal_wlist(self):
2937
- x = [1, 2, 3]
2938
- mx = masked_equal(x, 3)
2939
- assert_equal(mx, x)
2940
- assert_equal(mx._mask, [0, 0, 1])
2941
- mx = masked_not_equal(x, 3)
2942
- assert_equal(mx, x)
2943
- assert_equal(mx._mask, [1, 1, 0])
2944
-
2945
- def test_masked_equal_fill_value(self):
2946
- x = [1, 2, 3]
2947
- mx = masked_equal(x, 3)
2948
- assert_equal(mx._mask, [0, 0, 1])
2949
- assert_equal(mx.fill_value, 3)
2950
-
2951
- def test_masked_where_condition(self):
2952
- # Tests masking functions.
2953
- x = array([1., 2., 3., 4., 5.])
2954
- x[2] = masked
2955
- assert_equal(masked_where(greater(x, 2), x), masked_greater(x, 2))
2956
- assert_equal(masked_where(greater_equal(x, 2), x),
2957
- masked_greater_equal(x, 2))
2958
- assert_equal(masked_where(less(x, 2), x), masked_less(x, 2))
2959
- assert_equal(masked_where(less_equal(x, 2), x),
2960
- masked_less_equal(x, 2))
2961
- assert_equal(masked_where(not_equal(x, 2), x), masked_not_equal(x, 2))
2962
- assert_equal(masked_where(equal(x, 2), x), masked_equal(x, 2))
2963
- assert_equal(masked_where(not_equal(x, 2), x), masked_not_equal(x, 2))
2964
- assert_equal(masked_where([1, 1, 0, 0, 0], [1, 2, 3, 4, 5]),
2965
- [99, 99, 3, 4, 5])
2966
-
2967
- def test_masked_where_oddities(self):
2968
- # Tests some generic features.
2969
- atest = ones((10, 10, 10), dtype=float)
2970
- btest = zeros(atest.shape, MaskType)
2971
- ctest = masked_where(btest, atest)
2972
- assert_equal(atest, ctest)
2973
-
2974
- def test_masked_where_shape_constraint(self):
2975
- a = arange(10)
2976
- try:
2977
- test = masked_equal(1, a)
2978
- except IndexError:
2979
- pass
2980
- else:
2981
- raise AssertionError("Should have failed...")
2982
- test = masked_equal(a, 1)
2983
- assert_equal(test.mask, [0, 1, 0, 0, 0, 0, 0, 0, 0, 0])
2984
-
2985
- def test_masked_otherfunctions(self):
2986
- assert_equal(masked_inside(list(range(5)), 1, 3),
2987
- [0, 199, 199, 199, 4])
2988
- assert_equal(masked_outside(list(range(5)), 1, 3), [199, 1, 2, 3, 199])
2989
- assert_equal(masked_inside(array(list(range(5)),
2990
- mask=[1, 0, 0, 0, 0]), 1, 3).mask,
2991
- [1, 1, 1, 1, 0])
2992
- assert_equal(masked_outside(array(list(range(5)),
2993
- mask=[0, 1, 0, 0, 0]), 1, 3).mask,
2994
- [1, 1, 0, 0, 1])
2995
- assert_equal(masked_equal(array(list(range(5)),
2996
- mask=[1, 0, 0, 0, 0]), 2).mask,
2997
- [1, 0, 1, 0, 0])
2998
- assert_equal(masked_not_equal(array([2, 2, 1, 2, 1],
2999
- mask=[1, 0, 0, 0, 0]), 2).mask,
3000
- [1, 0, 1, 0, 1])
3001
-
3002
- def test_round(self):
3003
- a = array([1.23456, 2.34567, 3.45678, 4.56789, 5.67890],
3004
- mask=[0, 1, 0, 0, 0])
3005
- assert_equal(a.round(), [1., 2., 3., 5., 6.])
3006
- assert_equal(a.round(1), [1.2, 2.3, 3.5, 4.6, 5.7])
3007
- assert_equal(a.round(3), [1.235, 2.346, 3.457, 4.568, 5.679])
3008
- b = empty_like(a)
3009
- a.round(out=b)
3010
- assert_equal(b, [1., 2., 3., 5., 6.])
3011
-
3012
- x = array([1., 2., 3., 4., 5.])
3013
- c = array([1, 1, 1, 0, 0])
3014
- x[2] = masked
3015
- z = where(c, x, -x)
3016
- assert_equal(z, [1., 2., 0., -4., -5])
3017
- c[0] = masked
3018
- z = where(c, x, -x)
3019
- assert_equal(z, [1., 2., 0., -4., -5])
3020
- assert_(z[0] is masked)
3021
- assert_(z[1] is not masked)
3022
- assert_(z[2] is masked)
3023
-
3024
- def test_round_with_output(self):
3025
- # Testing round with an explicit output
3026
-
3027
- xm = array(np.random.uniform(0, 10, 12)).reshape(3, 4)
3028
- xm[:, 0] = xm[0] = xm[-1, -1] = masked
3029
-
3030
- # A ndarray as explicit input
3031
- output = np.empty((3, 4), dtype=float)
3032
- output.fill(-9999)
3033
- result = np.round(xm, decimals=2, out=output)
3034
- # ... the result should be the given output
3035
- self.assertTrue(result is output)
3036
- assert_equal(result, xm.round(decimals=2, out=output))
3037
- #
3038
- output = empty((3, 4), dtype=float)
3039
- result = xm.round(decimals=2, out=output)
3040
- self.assertTrue(result is output)
3041
-
3042
- def test_identity(self):
3043
- a = identity(5)
3044
- self.assertTrue(isinstance(a, MaskedArray))
3045
- assert_equal(a, np.identity(5))
3046
-
3047
- def test_power(self):
3048
- x = -1.1
3049
- assert_almost_equal(power(x, 2.), 1.21)
3050
- self.assertTrue(power(x, masked) is masked)
3051
- x = array([-1.1, -1.1, 1.1, 1.1, 0.])
3052
- b = array([0.5, 2., 0.5, 2., -1.], mask=[0, 0, 0, 0, 1])
3053
- y = power(x, b)
3054
- assert_almost_equal(y, [0, 1.21, 1.04880884817, 1.21, 0.])
3055
- assert_equal(y._mask, [1, 0, 0, 0, 1])
3056
- b.mask = nomask
3057
- y = power(x, b)
3058
- assert_equal(y._mask, [1, 0, 0, 0, 1])
3059
- z = x ** b
3060
- assert_equal(z._mask, y._mask)
3061
- assert_almost_equal(z, y)
3062
- assert_almost_equal(z._data, y._data)
3063
- x **= b
3064
- assert_equal(x._mask, y._mask)
3065
- assert_almost_equal(x, y)
3066
- assert_almost_equal(x._data, y._data)
3067
-
3068
- def test_power_w_broadcasting(self):
3069
- # Test power w/ broadcasting
3070
- a2 = np.array([[1., 2., 3.], [4., 5., 6.]])
3071
- a2m = array(a2, mask=[[1, 0, 0], [0, 0, 1]])
3072
- b1 = np.array([2, 4, 3])
3073
- b2 = np.array([b1, b1])
3074
- b2m = array(b2, mask=[[0, 1, 0], [0, 1, 0]])
3075
- #
3076
- ctrl = array([[1 ** 2, 2 ** 4, 3 ** 3], [4 ** 2, 5 ** 4, 6 ** 3]],
3077
- mask=[[1, 1, 0], [0, 1, 1]])
3078
- # No broadcasting, base & exp w/ mask
3079
- test = a2m ** b2m
3080
- assert_equal(test, ctrl)
3081
- assert_equal(test.mask, ctrl.mask)
3082
- # No broadcasting, base w/ mask, exp w/o mask
3083
- test = a2m ** b2
3084
- assert_equal(test, ctrl)
3085
- assert_equal(test.mask, a2m.mask)
3086
- # No broadcasting, base w/o mask, exp w/ mask
3087
- test = a2 ** b2m
3088
- assert_equal(test, ctrl)
3089
- assert_equal(test.mask, b2m.mask)
3090
- #
3091
- ctrl = array([[2 ** 2, 4 ** 4, 3 ** 3], [2 ** 2, 4 ** 4, 3 ** 3]],
3092
- mask=[[0, 1, 0], [0, 1, 0]])
3093
- test = b1 ** b2m
3094
- assert_equal(test, ctrl)
3095
- assert_equal(test.mask, ctrl.mask)
3096
- test = b2m ** b1
3097
- assert_equal(test, ctrl)
3098
- assert_equal(test.mask, ctrl.mask)
3099
-
3100
- def test_where(self):
3101
- # Test the where function
3102
- x = np.array([1., 1., 1., -2., pi/2.0, 4., 5., -10., 10., 1., 2., 3.])
3103
- y = np.array([5., 0., 3., 2., -1., -4., 0., -10., 10., 1., 0., 3.])
3104
- m1 = [1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0]
3105
- m2 = [0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 1]
3106
- xm = masked_array(x, mask=m1)
3107
- ym = masked_array(y, mask=m2)
3108
- xm.set_fill_value(1e+20)
3109
- #
3110
- d = where(xm > 2, xm, -9)
3111
- assert_equal(d, [-9., -9., -9., -9., -9., 4.,
3112
- -9., -9., 10., -9., -9., 3.])
3113
- assert_equal(d._mask, xm._mask)
3114
- d = where(xm > 2, -9, ym)
3115
- assert_equal(d, [5., 0., 3., 2., -1., -9.,
3116
- -9., -10., -9., 1., 0., -9.])
3117
- assert_equal(d._mask, [1, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0])
3118
- d = where(xm > 2, xm, masked)
3119
- assert_equal(d, [-9., -9., -9., -9., -9., 4.,
3120
- -9., -9., 10., -9., -9., 3.])
3121
- tmp = xm._mask.copy()
3122
- tmp[(xm <= 2).filled(True)] = True
3123
- assert_equal(d._mask, tmp)
3124
- #
3125
- ixm = xm.astype(int)
3126
- d = where(ixm > 2, ixm, masked)
3127
- assert_equal(d, [-9, -9, -9, -9, -9, 4, -9, -9, 10, -9, -9, 3])
3128
- assert_equal(d.dtype, ixm.dtype)
3129
-
3130
- def test_where_with_masked_choice(self):
3131
- x = arange(10)
3132
- x[3] = masked
3133
- c = x >= 8
3134
- # Set False to masked
3135
- z = where(c, x, masked)
3136
- assert_(z.dtype is x.dtype)
3137
- assert_(z[3] is masked)
3138
- assert_(z[4] is masked)
3139
- assert_(z[7] is masked)
3140
- assert_(z[8] is not masked)
3141
- assert_(z[9] is not masked)
3142
- assert_equal(x, z)
3143
- # Set True to masked
3144
- z = where(c, masked, x)
3145
- assert_(z.dtype is x.dtype)
3146
- assert_(z[3] is masked)
3147
- assert_(z[4] is not masked)
3148
- assert_(z[7] is not masked)
3149
- assert_(z[8] is masked)
3150
- assert_(z[9] is masked)
3151
-
3152
- def test_where_with_masked_condition(self):
3153
- x = array([1., 2., 3., 4., 5.])
3154
- c = array([1, 1, 1, 0, 0])
3155
- x[2] = masked
3156
- z = where(c, x, -x)
3157
- assert_equal(z, [1., 2., 0., -4., -5])
3158
- c[0] = masked
3159
- z = where(c, x, -x)
3160
- assert_equal(z, [1., 2., 0., -4., -5])
3161
- assert_(z[0] is masked)
3162
- assert_(z[1] is not masked)
3163
- assert_(z[2] is masked)
3164
- #
3165
- x = arange(1, 6)
3166
- x[-1] = masked
3167
- y = arange(1, 6) * 10
3168
- y[2] = masked
3169
- c = array([1, 1, 1, 0, 0], mask=[1, 0, 0, 0, 0])
3170
- cm = c.filled(1)
3171
- z = where(c, x, y)
3172
- zm = where(cm, x, y)
3173
- assert_equal(z, zm)
3174
- assert_(getmask(zm) is nomask)
3175
- assert_equal(zm, [1, 2, 3, 40, 50])
3176
- z = where(c, masked, 1)
3177
- assert_equal(z, [99, 99, 99, 1, 1])
3178
- z = where(c, 1, masked)
3179
- assert_equal(z, [99, 1, 1, 99, 99])
3180
-
3181
- def test_where_type(self):
3182
- # Test the type conservation with where
3183
- x = np.arange(4, dtype=np.int32)
3184
- y = np.arange(4, dtype=np.float32) * 2.2
3185
- test = where(x > 1.5, y, x).dtype
3186
- control = np.find_common_type([np.int32, np.float32], [])
3187
- assert_equal(test, control)
3188
-
3189
- def test_choose(self):
3190
- # Test choose
3191
- choices = [[0, 1, 2, 3], [10, 11, 12, 13],
3192
- [20, 21, 22, 23], [30, 31, 32, 33]]
3193
- chosen = choose([2, 3, 1, 0], choices)
3194
- assert_equal(chosen, array([20, 31, 12, 3]))
3195
- chosen = choose([2, 4, 1, 0], choices, mode='clip')
3196
- assert_equal(chosen, array([20, 31, 12, 3]))
3197
- chosen = choose([2, 4, 1, 0], choices, mode='wrap')
3198
- assert_equal(chosen, array([20, 1, 12, 3]))
3199
- # Check with some masked indices
3200
- indices_ = array([2, 4, 1, 0], mask=[1, 0, 0, 1])
3201
- chosen = choose(indices_, choices, mode='wrap')
3202
- assert_equal(chosen, array([99, 1, 12, 99]))
3203
- assert_equal(chosen.mask, [1, 0, 0, 1])
3204
- # Check with some masked choices
3205
- choices = array(choices, mask=[[0, 0, 0, 1], [1, 1, 0, 1],
3206
- [1, 0, 0, 0], [0, 0, 0, 0]])
3207
- indices_ = [2, 3, 1, 0]
3208
- chosen = choose(indices_, choices, mode='wrap')
3209
- assert_equal(chosen, array([20, 31, 12, 3]))
3210
- assert_equal(chosen.mask, [1, 0, 0, 1])
3211
-
3212
- def test_choose_with_out(self):
3213
- # Test choose with an explicit out keyword
3214
- choices = [[0, 1, 2, 3], [10, 11, 12, 13],
3215
- [20, 21, 22, 23], [30, 31, 32, 33]]
3216
- store = empty(4, dtype=int)
3217
- chosen = choose([2, 3, 1, 0], choices, out=store)
3218
- assert_equal(store, array([20, 31, 12, 3]))
3219
- self.assertTrue(store is chosen)
3220
- # Check with some masked indices + out
3221
- store = empty(4, dtype=int)
3222
- indices_ = array([2, 3, 1, 0], mask=[1, 0, 0, 1])
3223
- chosen = choose(indices_, choices, mode='wrap', out=store)
3224
- assert_equal(store, array([99, 31, 12, 99]))
3225
- assert_equal(store.mask, [1, 0, 0, 1])
3226
- # Check with some masked choices + out ina ndarray !
3227
- choices = array(choices, mask=[[0, 0, 0, 1], [1, 1, 0, 1],
3228
- [1, 0, 0, 0], [0, 0, 0, 0]])
3229
- indices_ = [2, 3, 1, 0]
3230
- store = empty(4, dtype=int).view(ndarray)
3231
- chosen = choose(indices_, choices, mode='wrap', out=store)
3232
- assert_equal(store, array([999999, 31, 12, 999999]))
3233
-
3234
- def test_reshape(self):
3235
- a = arange(10)
3236
- a[0] = masked
3237
- # Try the default
3238
- b = a.reshape((5, 2))
3239
- assert_equal(b.shape, (5, 2))
3240
- self.assertTrue(b.flags['C'])
3241
- # Try w/ arguments as list instead of tuple
3242
- b = a.reshape(5, 2)
3243
- assert_equal(b.shape, (5, 2))
3244
- self.assertTrue(b.flags['C'])
3245
- # Try w/ order
3246
- b = a.reshape((5, 2), order='F')
3247
- assert_equal(b.shape, (5, 2))
3248
- self.assertTrue(b.flags['F'])
3249
- # Try w/ order
3250
- b = a.reshape(5, 2, order='F')
3251
- assert_equal(b.shape, (5, 2))
3252
- self.assertTrue(b.flags['F'])
3253
- #
3254
- c = np.reshape(a, (2, 5))
3255
- self.assertTrue(isinstance(c, MaskedArray))
3256
- assert_equal(c.shape, (2, 5))
3257
- self.assertTrue(c[0, 0] is masked)
3258
- self.assertTrue(c.flags['C'])
3259
-
3260
- def test_make_mask_descr(self):
3261
- # Test make_mask_descr
3262
- # Flexible
3263
- ntype = [('a', np.float), ('b', np.float)]
3264
- test = make_mask_descr(ntype)
3265
- assert_equal(test, [('a', np.bool), ('b', np.bool)])
3266
- # Standard w/ shape
3267
- ntype = (np.float, 2)
3268
- test = make_mask_descr(ntype)
3269
- assert_equal(test, (np.bool, 2))
3270
- # Standard standard
3271
- ntype = np.float
3272
- test = make_mask_descr(ntype)
3273
- assert_equal(test, np.dtype(np.bool))
3274
- # Nested
3275
- ntype = [('a', np.float), ('b', [('ba', np.float), ('bb', np.float)])]
3276
- test = make_mask_descr(ntype)
3277
- control = np.dtype([('a', 'b1'), ('b', [('ba', 'b1'), ('bb', 'b1')])])
3278
- assert_equal(test, control)
3279
- # Named+ shape
3280
- ntype = [('a', (np.float, 2))]
3281
- test = make_mask_descr(ntype)
3282
- assert_equal(test, np.dtype([('a', (np.bool, 2))]))
3283
- # 2 names
3284
- ntype = [(('A', 'a'), float)]
3285
- test = make_mask_descr(ntype)
3286
- assert_equal(test, np.dtype([(('A', 'a'), bool)]))
3287
-
3288
- def test_make_mask(self):
3289
- # Test make_mask
3290
- # w/ a list as an input
3291
- mask = [0, 1]
3292
- test = make_mask(mask)
3293
- assert_equal(test.dtype, MaskType)
3294
- assert_equal(test, [0, 1])
3295
- # w/ a ndarray as an input
3296
- mask = np.array([0, 1], dtype=np.bool)
3297
- test = make_mask(mask)
3298
- assert_equal(test.dtype, MaskType)
3299
- assert_equal(test, [0, 1])
3300
- # w/ a flexible-type ndarray as an input - use default
3301
- mdtype = [('a', np.bool), ('b', np.bool)]
3302
- mask = np.array([(0, 0), (0, 1)], dtype=mdtype)
3303
- test = make_mask(mask)
3304
- assert_equal(test.dtype, MaskType)
3305
- assert_equal(test, [1, 1])
3306
- # w/ a flexible-type ndarray as an input - use input dtype
3307
- mdtype = [('a', np.bool), ('b', np.bool)]
3308
- mask = np.array([(0, 0), (0, 1)], dtype=mdtype)
3309
- test = make_mask(mask, dtype=mask.dtype)
3310
- assert_equal(test.dtype, mdtype)
3311
- assert_equal(test, mask)
3312
- # w/ a flexible-type ndarray as an input - use input dtype
3313
- mdtype = [('a', np.float), ('b', np.float)]
3314
- bdtype = [('a', np.bool), ('b', np.bool)]
3315
- mask = np.array([(0, 0), (0, 1)], dtype=mdtype)
3316
- test = make_mask(mask, dtype=mask.dtype)
3317
- assert_equal(test.dtype, bdtype)
3318
- assert_equal(test, np.array([(0, 0), (0, 1)], dtype=bdtype))
3319
-
3320
- def test_mask_or(self):
3321
- # Initialize
3322
- mtype = [('a', np.bool), ('b', np.bool)]
3323
- mask = np.array([(0, 0), (0, 1), (1, 0), (0, 0)], dtype=mtype)
3324
- # Test using nomask as input
3325
- test = mask_or(mask, nomask)
3326
- assert_equal(test, mask)
3327
- test = mask_or(nomask, mask)
3328
- assert_equal(test, mask)
3329
- # Using False as input
3330
- test = mask_or(mask, False)
3331
- assert_equal(test, mask)
3332
- # Using True as input. Won't work, but keep it for the kicks
3333
- # test = mask_or(mask, True)
3334
- # control = np.array([(1, 1), (1, 1), (1, 1), (1, 1)], dtype=mtype)
3335
- # assert_equal(test, control)
3336
- # Using another array w / the same dtype
3337
- other = np.array([(0, 1), (0, 1), (0, 1), (0, 1)], dtype=mtype)
3338
- test = mask_or(mask, other)
3339
- control = np.array([(0, 1), (0, 1), (1, 1), (0, 1)], dtype=mtype)
3340
- assert_equal(test, control)
3341
- # Using another array w / a different dtype
3342
- othertype = [('A', np.bool), ('B', np.bool)]
3343
- other = np.array([(0, 1), (0, 1), (0, 1), (0, 1)], dtype=othertype)
3344
- try:
3345
- test = mask_or(mask, other)
3346
- except ValueError:
3347
- pass
3348
- # Using nested arrays
3349
- dtype = [('a', np.bool), ('b', [('ba', np.bool), ('bb', np.bool)])]
3350
- amask = np.array([(0, (1, 0)), (0, (1, 0))], dtype=dtype)
3351
- bmask = np.array([(1, (0, 1)), (0, (0, 0))], dtype=dtype)
3352
- cntrl = np.array([(1, (1, 1)), (0, (1, 0))], dtype=dtype)
3353
- assert_equal(mask_or(amask, bmask), cntrl)
3354
-
3355
- def test_flatten_mask(self):
3356
- # Tests flatten mask
3357
- # Standarad dtype
3358
- mask = np.array([0, 0, 1], dtype=np.bool)
3359
- assert_equal(flatten_mask(mask), mask)
3360
- # Flexible dtype
3361
- mask = np.array([(0, 0), (0, 1)], dtype=[('a', bool), ('b', bool)])
3362
- test = flatten_mask(mask)
3363
- control = np.array([0, 0, 0, 1], dtype=bool)
3364
- assert_equal(test, control)
3365
-
3366
- mdtype = [('a', bool), ('b', [('ba', bool), ('bb', bool)])]
3367
- data = [(0, (0, 0)), (0, (0, 1))]
3368
- mask = np.array(data, dtype=mdtype)
3369
- test = flatten_mask(mask)
3370
- control = np.array([0, 0, 0, 0, 0, 1], dtype=bool)
3371
- assert_equal(test, control)
3372
-
3373
- def test_on_ndarray(self):
3374
- # Test functions on ndarrays
3375
- a = np.array([1, 2, 3, 4])
3376
- m = array(a, mask=False)
3377
- test = anom(a)
3378
- assert_equal(test, m.anom())
3379
- test = reshape(a, (2, 2))
3380
- assert_equal(test, m.reshape(2, 2))
3381
-
3382
- def test_compress(self):
3383
- # Test compress function on ndarray and masked array
3384
- # Address Github #2495.
3385
- arr = np.arange(8)
3386
- arr.shape = 4, 2
3387
- cond = np.array([True, False, True, True])
3388
- control = arr[[0, 2, 3]]
3389
- test = np.ma.compress(cond, arr, axis=0)
3390
- assert_equal(test, control)
3391
- marr = np.ma.array(arr)
3392
- test = np.ma.compress(cond, marr, axis=0)
3393
- assert_equal(test, control)
3394
-
3395
- def test_compressed(self):
3396
- # Test ma.compressed function.
3397
- # Address gh-4026
3398
- a = np.ma.array([1, 2])
3399
- test = np.ma.compressed(a)
3400
- assert_(type(test) is np.ndarray)
3401
- # Test case when input data is ndarray subclass
3402
- class A(np.ndarray):
3403
- pass
3404
- a = np.ma.array(A(shape=0))
3405
- test = np.ma.compressed(a)
3406
- assert_(type(test) is A)
3407
- # Test that compress flattens
3408
- test = np.ma.compressed([[1],[2]])
3409
- assert_equal(test.ndim, 1)
3410
- test = np.ma.compressed([[[[[1]]]]])
3411
- assert_equal(test.ndim, 1)
3412
- # Test case when input is MaskedArray subclass
3413
- class M(MaskedArray):
3414
- pass
3415
- test = np.ma.compressed(M(shape=(0,1,2)))
3416
- assert_equal(test.ndim, 1)
3417
- # with .compessed() overriden
3418
- class M(MaskedArray):
3419
- def compressed(self):
3420
- return 42
3421
- test = np.ma.compressed(M(shape=(0,1,2)))
3422
- assert_equal(test, 42)
3423
-
3424
- #------------------------------------------------------------------------------
3425
- class TestMaskedFields(TestCase):
3426
- #
3427
- def setUp(self):
3428
- ilist = [1, 2, 3, 4, 5]
3429
- flist = [1.1, 2.2, 3.3, 4.4, 5.5]
3430
- slist = ['one', 'two', 'three', 'four', 'five']
3431
- ddtype = [('a', int), ('b', float), ('c', '|S8')]
3432
- mdtype = [('a', bool), ('b', bool), ('c', bool)]
3433
- mask = [0, 1, 0, 0, 1]
3434
- base = array(list(zip(ilist, flist, slist)), mask=mask, dtype=ddtype)
3435
- self.data = dict(base=base, mask=mask, ddtype=ddtype, mdtype=mdtype)
3436
-
3437
- def test_set_records_masks(self):
3438
- base = self.data['base']
3439
- mdtype = self.data['mdtype']
3440
- # Set w/ nomask or masked
3441
- base.mask = nomask
3442
- assert_equal_records(base._mask, np.zeros(base.shape, dtype=mdtype))
3443
- base.mask = masked
3444
- assert_equal_records(base._mask, np.ones(base.shape, dtype=mdtype))
3445
- # Set w/ simple boolean
3446
- base.mask = False
3447
- assert_equal_records(base._mask, np.zeros(base.shape, dtype=mdtype))
3448
- base.mask = True
3449
- assert_equal_records(base._mask, np.ones(base.shape, dtype=mdtype))
3450
- # Set w/ list
3451
- base.mask = [0, 0, 0, 1, 1]
3452
- assert_equal_records(base._mask,
3453
- np.array([(x, x, x) for x in [0, 0, 0, 1, 1]],
3454
- dtype=mdtype))
3455
-
3456
- def test_set_record_element(self):
3457
- # Check setting an element of a record)
3458
- base = self.data['base']
3459
- (base_a, base_b, base_c) = (base['a'], base['b'], base['c'])
3460
- base[0] = (pi, pi, 'pi')
3461
-
3462
- assert_equal(base_a.dtype, int)
3463
- assert_equal(base_a._data, [3, 2, 3, 4, 5])
3464
-
3465
- assert_equal(base_b.dtype, float)
3466
- assert_equal(base_b._data, [pi, 2.2, 3.3, 4.4, 5.5])
3467
-
3468
- assert_equal(base_c.dtype, '|S8')
3469
- assert_equal(base_c._data,
3470
- asbytes_nested(['pi', 'two', 'three', 'four', 'five']))
3471
-
3472
- def test_set_record_slice(self):
3473
- base = self.data['base']
3474
- (base_a, base_b, base_c) = (base['a'], base['b'], base['c'])
3475
- base[:3] = (pi, pi, 'pi')
3476
-
3477
- assert_equal(base_a.dtype, int)
3478
- assert_equal(base_a._data, [3, 3, 3, 4, 5])
3479
-
3480
- assert_equal(base_b.dtype, float)
3481
- assert_equal(base_b._data, [pi, pi, pi, 4.4, 5.5])
3482
-
3483
- assert_equal(base_c.dtype, '|S8')
3484
- assert_equal(base_c._data,
3485
- asbytes_nested(['pi', 'pi', 'pi', 'four', 'five']))
3486
-
3487
- def test_mask_element(self):
3488
- "Check record access"
3489
- base = self.data['base']
3490
- (base_a, base_b, base_c) = (base['a'], base['b'], base['c'])
3491
- base[0] = masked
3492
- #
3493
- for n in ('a', 'b', 'c'):
3494
- assert_equal(base[n].mask, [1, 1, 0, 0, 1])
3495
- assert_equal(base[n]._data, base._data[n])
3496
-
3497
- def test_getmaskarray(self):
3498
- # Test getmaskarray on flexible dtype
3499
- ndtype = [('a', int), ('b', float)]
3500
- test = empty(3, dtype=ndtype)
3501
- assert_equal(getmaskarray(test),
3502
- np.array([(0, 0), (0, 0), (0, 0)],
3503
- dtype=[('a', '|b1'), ('b', '|b1')]))
3504
- test[:] = masked
3505
- assert_equal(getmaskarray(test),
3506
- np.array([(1, 1), (1, 1), (1, 1)],
3507
- dtype=[('a', '|b1'), ('b', '|b1')]))
3508
-
3509
- def test_view(self):
3510
- # Test view w/ flexible dtype
3511
- iterator = list(zip(np.arange(10), np.random.rand(10)))
3512
- data = np.array(iterator)
3513
- a = array(iterator, dtype=[('a', float), ('b', float)])
3514
- a.mask[0] = (1, 0)
3515
- controlmask = np.array([1] + 19 * [0], dtype=bool)
3516
- # Transform globally to simple dtype
3517
- test = a.view(float)
3518
- assert_equal(test, data.ravel())
3519
- assert_equal(test.mask, controlmask)
3520
- # Transform globally to dty
3521
- test = a.view((float, 2))
3522
- assert_equal(test, data)
3523
- assert_equal(test.mask, controlmask.reshape(-1, 2))
3524
- #
3525
- test = a.view((float, 2), np.matrix)
3526
- assert_equal(test, data)
3527
- self.assertTrue(isinstance(test, np.matrix))
3528
-
3529
- def test_getitem(self):
3530
- ndtype = [('a', float), ('b', float)]
3531
- a = array(list(zip(np.random.rand(10), np.arange(10))), dtype=ndtype)
3532
- a.mask = np.array(list(zip([0, 0, 0, 0, 0, 0, 0, 0, 1, 1],
3533
- [1, 0, 0, 0, 0, 0, 0, 0, 1, 0])),
3534
- dtype=[('a', bool), ('b', bool)])
3535
- # No mask
3536
- self.assertTrue(isinstance(a[1], MaskedArray))
3537
- # One element masked
3538
- self.assertTrue(isinstance(a[0], MaskedArray))
3539
- assert_equal_records(a[0]._data, a._data[0])
3540
- assert_equal_records(a[0]._mask, a._mask[0])
3541
- # All element masked
3542
- self.assertTrue(isinstance(a[-2], MaskedArray))
3543
- assert_equal_records(a[-2]._data, a._data[-2])
3544
- assert_equal_records(a[-2]._mask, a._mask[-2])
3545
-
3546
- def test_setitem(self):
3547
- # Issue 4866: check that one can set individual items in [record][col]
3548
- # and [col][record] order
3549
- ndtype = np.dtype([('a', float), ('b', int)])
3550
- ma = np.ma.MaskedArray([(1.0, 1), (2.0, 2)], dtype=ndtype)
3551
- ma['a'][1] = 3.0
3552
- assert_equal(ma['a'], np.array([1.0, 3.0]))
3553
- ma[1]['a'] = 4.0
3554
- assert_equal(ma['a'], np.array([1.0, 4.0]))
3555
- # Issue 2403
3556
- mdtype = np.dtype([('a', bool), ('b', bool)])
3557
- # soft mask
3558
- control = np.array([(False, True), (True, True)], dtype=mdtype)
3559
- a = np.ma.masked_all((2,), dtype=ndtype)
3560
- a['a'][0] = 2
3561
- assert_equal(a.mask, control)
3562
- a = np.ma.masked_all((2,), dtype=ndtype)
3563
- a[0]['a'] = 2
3564
- assert_equal(a.mask, control)
3565
- # hard mask
3566
- control = np.array([(True, True), (True, True)], dtype=mdtype)
3567
- a = np.ma.masked_all((2,), dtype=ndtype)
3568
- a.harden_mask()
3569
- a['a'][0] = 2
3570
- assert_equal(a.mask, control)
3571
- a = np.ma.masked_all((2,), dtype=ndtype)
3572
- a.harden_mask()
3573
- a[0]['a'] = 2
3574
- assert_equal(a.mask, control)
3575
-
3576
- def test_element_len(self):
3577
- # check that len() works for mvoid (Github issue #576)
3578
- for rec in self.data['base']:
3579
- assert_equal(len(rec), len(self.data['ddtype']))
3580
-
3581
-
3582
- #------------------------------------------------------------------------------
3583
- class TestMaskedView(TestCase):
3584
- #
3585
- def setUp(self):
3586
- iterator = list(zip(np.arange(10), np.random.rand(10)))
3587
- data = np.array(iterator)
3588
- a = array(iterator, dtype=[('a', float), ('b', float)])
3589
- a.mask[0] = (1, 0)
3590
- controlmask = np.array([1] + 19 * [0], dtype=bool)
3591
- self.data = (data, a, controlmask)
3592
-
3593
- def test_view_to_nothing(self):
3594
- (data, a, controlmask) = self.data
3595
- test = a.view()
3596
- self.assertTrue(isinstance(test, MaskedArray))
3597
- assert_equal(test._data, a._data)
3598
- assert_equal(test._mask, a._mask)
3599
-
3600
- def test_view_to_type(self):
3601
- (data, a, controlmask) = self.data
3602
- test = a.view(np.ndarray)
3603
- self.assertTrue(not isinstance(test, MaskedArray))
3604
- assert_equal(test, a._data)
3605
- assert_equal_records(test, data.view(a.dtype).squeeze())
3606
-
3607
- def test_view_to_simple_dtype(self):
3608
- (data, a, controlmask) = self.data
3609
- # View globally
3610
- test = a.view(float)
3611
- self.assertTrue(isinstance(test, MaskedArray))
3612
- assert_equal(test, data.ravel())
3613
- assert_equal(test.mask, controlmask)
3614
-
3615
- def test_view_to_flexible_dtype(self):
3616
- (data, a, controlmask) = self.data
3617
- #
3618
- test = a.view([('A', float), ('B', float)])
3619
- assert_equal(test.mask.dtype.names, ('A', 'B'))
3620
- assert_equal(test['A'], a['a'])
3621
- assert_equal(test['B'], a['b'])
3622
- #
3623
- test = a[0].view([('A', float), ('B', float)])
3624
- self.assertTrue(isinstance(test, MaskedArray))
3625
- assert_equal(test.mask.dtype.names, ('A', 'B'))
3626
- assert_equal(test['A'], a['a'][0])
3627
- assert_equal(test['B'], a['b'][0])
3628
- #
3629
- test = a[-1].view([('A', float), ('B', float)])
3630
- self.assertTrue(isinstance(test, MaskedArray))
3631
- assert_equal(test.dtype.names, ('A', 'B'))
3632
- assert_equal(test['A'], a['a'][-1])
3633
- assert_equal(test['B'], a['b'][-1])
3634
-
3635
- def test_view_to_subdtype(self):
3636
- (data, a, controlmask) = self.data
3637
- # View globally
3638
- test = a.view((float, 2))
3639
- self.assertTrue(isinstance(test, MaskedArray))
3640
- assert_equal(test, data)
3641
- assert_equal(test.mask, controlmask.reshape(-1, 2))
3642
- # View on 1 masked element
3643
- test = a[0].view((float, 2))
3644
- self.assertTrue(isinstance(test, MaskedArray))
3645
- assert_equal(test, data[0])
3646
- assert_equal(test.mask, (1, 0))
3647
- # View on 1 unmasked element
3648
- test = a[-1].view((float, 2))
3649
- self.assertTrue(isinstance(test, MaskedArray))
3650
- assert_equal(test, data[-1])
3651
-
3652
- def test_view_to_dtype_and_type(self):
3653
- (data, a, controlmask) = self.data
3654
- #
3655
- test = a.view((float, 2), np.matrix)
3656
- assert_equal(test, data)
3657
- self.assertTrue(isinstance(test, np.matrix))
3658
- self.assertTrue(not isinstance(test, MaskedArray))
3659
-
3660
-
3661
- def test_masked_array():
3662
- a = np.ma.array([0, 1, 2, 3], mask=[0, 0, 1, 0])
3663
- assert_equal(np.argwhere(a), [[1], [3]])
3664
-
3665
- def test_append_masked_array():
3666
- a = np.ma.masked_equal([1,2,3], value=2)
3667
- b = np.ma.masked_equal([4,3,2], value=2)
3668
-
3669
- result = np.ma.append(a, b)
3670
- expected_data = [1, 2, 3, 4, 3, 2]
3671
- expected_mask = [False, True, False, False, False, True]
3672
- assert_array_equal(result.data, expected_data)
3673
- assert_array_equal(result.mask, expected_mask)
3674
-
3675
- a = np.ma.masked_all((2,2))
3676
- b = np.ma.ones((3,1))
3677
-
3678
- result = np.ma.append(a, b)
3679
- expected_data = [1] * 3
3680
- expected_mask = [True] * 4 + [False] * 3
3681
- assert_array_equal(result.data[-3], expected_data)
3682
- assert_array_equal(result.mask, expected_mask)
3683
-
3684
- result = np.ma.append(a, b, axis=None)
3685
- assert_array_equal(result.data[-3], expected_data)
3686
- assert_array_equal(result.mask, expected_mask)
3687
-
3688
-
3689
- def test_append_masked_array_along_axis():
3690
- a = np.ma.masked_equal([1,2,3], value=2)
3691
- b = np.ma.masked_values([[4, 5, 6], [7, 8, 9]], 7)
3692
-
3693
- # When `axis` is specified, `values` must have the correct shape.
3694
- assert_raises(ValueError, np.ma.append, a, b, axis=0)
3695
-
3696
- result = np.ma.append(a[np.newaxis,:], b, axis=0)
3697
- expected = np.ma.arange(1, 10)
3698
- expected[[1, 6]] = np.ma.masked
3699
- expected = expected.reshape((3,3))
3700
- assert_array_equal(result.data, expected.data)
3701
- assert_array_equal(result.mask, expected.mask)
3702
-
3703
-
3704
- ###############################################################################
3705
- if __name__ == "__main__":
3706
- run_module_suite()