monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
- tests/networks/nets/test_patch_gan_dicriminator.py +179 -0
- tests/networks/nets/test_quicknat.py +57 -0
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- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from unittest import skipUnless
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.networks import eval_mode
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from monai.networks.blocks.crossattention import CrossAttentionBlock
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from monai.networks.layers.factories import RelPosEmbedding
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from monai.utils import optional_import
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from tests.test_utils import SkipIfBeforePyTorchVersion, assert_allclose
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einops, has_einops = optional_import("einops")
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TEST_CASE_CABLOCK = []
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for dropout_rate in np.linspace(0, 1, 4):
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for hidden_size in [360, 480, 600, 768]:
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for num_heads in [4, 6, 8, 12]:
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for rel_pos_embedding in [None, RelPosEmbedding.DECOMPOSED]:
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for input_size in [(16, 32), (8, 8, 8)]:
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for flash_attn in [True, False]:
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test_case = [
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{
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"hidden_size": hidden_size,
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"num_heads": num_heads,
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"dropout_rate": dropout_rate,
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"rel_pos_embedding": rel_pos_embedding if not flash_attn else None,
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"input_size": input_size,
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"use_flash_attention": flash_attn,
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},
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(2, 512, hidden_size),
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(2, 512, hidden_size),
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]
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TEST_CASE_CABLOCK.append(test_case)
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class TestResBlock(unittest.TestCase):
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@parameterized.expand(TEST_CASE_CABLOCK)
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@skipUnless(has_einops, "Requires einops")
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@SkipIfBeforePyTorchVersion((2, 0))
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def test_shape(self, input_param, input_shape, expected_shape):
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# Without flash attention
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net = CrossAttentionBlock(**input_param)
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with eval_mode(net):
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result = net(torch.randn(input_shape), context=torch.randn(2, 512, input_param["hidden_size"]))
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self.assertEqual(result.shape, expected_shape)
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def test_ill_arg(self):
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with self.assertRaises(ValueError):
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CrossAttentionBlock(hidden_size=128, num_heads=12, dropout_rate=6.0)
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with self.assertRaises(ValueError):
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CrossAttentionBlock(hidden_size=620, num_heads=8, dropout_rate=0.4)
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@SkipIfBeforePyTorchVersion((2, 0))
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def test_save_attn_with_flash_attention(self):
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with self.assertRaises(ValueError):
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CrossAttentionBlock(
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hidden_size=128, num_heads=3, dropout_rate=0.1, use_flash_attention=True, save_attn=True
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)
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@SkipIfBeforePyTorchVersion((2, 0))
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def test_rel_pos_embedding_with_flash_attention(self):
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with self.assertRaises(ValueError):
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CrossAttentionBlock(
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hidden_size=128,
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num_heads=3,
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dropout_rate=0.1,
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use_flash_attention=True,
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save_attn=False,
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rel_pos_embedding=RelPosEmbedding.DECOMPOSED,
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)
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@skipUnless(has_einops, "Requires einops")
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def test_attention_dim_not_multiple_of_heads(self):
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with self.assertRaises(ValueError):
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CrossAttentionBlock(hidden_size=128, num_heads=3, dropout_rate=0.1)
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@skipUnless(has_einops, "Requires einops")
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def test_inner_dim_different(self):
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CrossAttentionBlock(hidden_size=128, num_heads=4, dropout_rate=0.1, dim_head=30)
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def test_causal_no_sequence_length(self):
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with self.assertRaises(ValueError):
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CrossAttentionBlock(hidden_size=128, num_heads=4, dropout_rate=0.1, causal=True)
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@skipUnless(has_einops, "Requires einops")
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@SkipIfBeforePyTorchVersion((2, 0))
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def test_causal_flash_attention(self):
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block = CrossAttentionBlock(
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hidden_size=128,
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num_heads=1,
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dropout_rate=0.1,
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causal=True,
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sequence_length=16,
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save_attn=False,
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use_flash_attention=True,
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)
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input_shape = (1, 16, 128)
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# Check it runs correctly
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block(torch.randn(input_shape))
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@skipUnless(has_einops, "Requires einops")
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def test_causal(self):
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block = CrossAttentionBlock(
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hidden_size=128, num_heads=1, dropout_rate=0.1, causal=True, sequence_length=16, save_attn=True
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)
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input_shape = (1, 16, 128)
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block(torch.randn(input_shape))
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# check upper triangular part of the attention matrix is zero
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assert torch.triu(block.att_mat, diagonal=1).sum() == 0
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@skipUnless(has_einops, "Requires einops")
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def test_context_input(self):
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block = CrossAttentionBlock(
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hidden_size=128, num_heads=1, dropout_rate=0.1, causal=True, sequence_length=16, context_input_size=12
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)
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input_shape = (1, 16, 128)
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block(torch.randn(input_shape), context=torch.randn(1, 3, 12))
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@skipUnless(has_einops, "Requires einops")
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def test_context_wrong_input_size(self):
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block = CrossAttentionBlock(
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hidden_size=128, num_heads=1, dropout_rate=0.1, causal=True, sequence_length=16, context_input_size=12
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)
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input_shape = (1, 16, 128)
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with self.assertRaises(RuntimeError):
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block(torch.randn(input_shape), context=torch.randn(1, 3, 24))
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@skipUnless(has_einops, "Requires einops")
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def test_access_attn_matrix(self):
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# input format
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hidden_size = 128
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num_heads = 2
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dropout_rate = 0
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input_shape = (2, 256, hidden_size)
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# be not able to access the matrix
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no_matrix_acess_blk = CrossAttentionBlock(
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hidden_size=hidden_size, num_heads=num_heads, dropout_rate=dropout_rate
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)
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no_matrix_acess_blk(torch.randn(input_shape))
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assert isinstance(no_matrix_acess_blk.att_mat, torch.Tensor)
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# no of elements is zero
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assert no_matrix_acess_blk.att_mat.nelement() == 0
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# be able to acess the attention matrix.
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matrix_acess_blk = CrossAttentionBlock(
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hidden_size=hidden_size, num_heads=num_heads, dropout_rate=dropout_rate, save_attn=True
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)
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matrix_acess_blk(torch.randn(input_shape))
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assert matrix_acess_blk.att_mat.shape == (input_shape[0], input_shape[0], input_shape[1], input_shape[1])
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@parameterized.expand([[True], [False]])
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@skipUnless(has_einops, "Requires einops")
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@SkipIfBeforePyTorchVersion((2, 0))
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def test_flash_attention(self, causal):
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input_param = {"hidden_size": 128, "num_heads": 1, "causal": causal, "sequence_length": 16 if causal else None}
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device = "cuda:0" if torch.cuda.is_available() else "cpu"
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block_w_flash_attention = CrossAttentionBlock(**input_param, use_flash_attention=True).to(device)
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block_wo_flash_attention = CrossAttentionBlock(**input_param, use_flash_attention=False).to(device)
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block_wo_flash_attention.load_state_dict(block_w_flash_attention.state_dict())
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test_data = torch.randn(1, 16, 128).to(device)
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out_1 = block_w_flash_attention(test_data)
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out_2 = block_wo_flash_attention(test_data)
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assert_allclose(out_1, out_2, atol=1e-4)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import torch.nn as nn
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from monai.networks.blocks import ConvDenseBlock, DenseBlock
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from tests.test_utils import TorchImageTestCase2D, TorchImageTestCase3D
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class TestDenseBlock2D(TorchImageTestCase2D):
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def test_block_empty(self):
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block = DenseBlock([])
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out = block(self.imt)
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expected_shape = self.imt.shape
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self.assertEqual(out.shape, expected_shape)
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def test_block_conv(self):
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conv1 = nn.Conv2d(self.input_channels, self.output_channels, 3, padding=1)
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conv2 = nn.Conv2d(self.input_channels + self.output_channels, self.input_channels, 3, padding=1)
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block = DenseBlock([conv1, conv2])
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out = block(self.imt)
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expected_shape = (1, self.output_channels + self.input_channels * 2, self.im_shape[0], self.im_shape[1])
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self.assertEqual(out.shape, expected_shape)
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class TestDenseBlock3D(TorchImageTestCase3D):
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def test_block_conv(self):
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conv1 = nn.Conv3d(self.input_channels, self.output_channels, 3, padding=1)
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conv2 = nn.Conv3d(self.input_channels + self.output_channels, self.input_channels, 3, padding=1)
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block = DenseBlock([conv1, conv2])
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out = block(self.imt)
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expected_shape = (
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1,
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self.output_channels + self.input_channels * 2,
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self.im_shape[0],
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self.im_shape[1],
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self.im_shape[2],
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)
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self.assertEqual(out.shape, expected_shape)
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class TestConvDenseBlock2D(TorchImageTestCase2D):
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def test_block_empty(self):
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conv = ConvDenseBlock(spatial_dims=2, in_channels=self.input_channels, channels=[])
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out = conv(self.imt)
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expected_shape = self.imt.shape
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self.assertEqual(out.shape, expected_shape)
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def test_except(self):
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with self.assertRaises(ValueError):
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_ = ConvDenseBlock(spatial_dims=2, in_channels=self.input_channels, channels=[1, 2], dilations=[1, 2, 3])
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def test_block1(self):
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channels = [2, 4]
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conv = ConvDenseBlock(spatial_dims=2, in_channels=self.input_channels, channels=channels)
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out = conv(self.imt)
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expected_shape = (1, self.input_channels + sum(channels), self.im_shape[0], self.im_shape[1])
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self.assertEqual(out.shape, expected_shape)
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def test_block2(self):
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channels = [2, 4]
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dilations = [1, 2]
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conv = ConvDenseBlock(spatial_dims=2, in_channels=self.input_channels, channels=channels, dilations=dilations)
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out = conv(self.imt)
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expected_shape = (1, self.input_channels + sum(channels), self.im_shape[0], self.im_shape[1])
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self.assertEqual(out.shape, expected_shape)
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class TestConvDenseBlock3D(TorchImageTestCase3D):
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def test_block_empty(self):
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conv = ConvDenseBlock(spatial_dims=3, in_channels=self.input_channels, channels=[])
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out = conv(self.imt)
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expected_shape = self.imt.shape
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self.assertEqual(out.shape, expected_shape)
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def test_block1(self):
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channels = [2, 4]
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conv = ConvDenseBlock(spatial_dims=3, in_channels=self.input_channels, channels=channels)
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out = conv(self.imt)
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expected_shape = (1, self.input_channels + sum(channels), self.im_shape[0], self.im_shape[1], self.im_shape[2])
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self.assertEqual(out.shape, expected_shape)
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def test_block2(self):
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channels = [2, 4]
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dilations = [1, 2]
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conv = ConvDenseBlock(spatial_dims=3, in_channels=self.input_channels, channels=channels, dilations=dilations)
|
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out = conv(self.imt)
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expected_shape = (1, self.input_channels + sum(channels), self.im_shape[0], self.im_shape[1], self.im_shape[2])
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self.assertEqual(out.shape, expected_shape)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import torch
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from parameterized import parameterized
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from monai.networks import eval_mode
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from monai.networks.blocks.dynunet_block import UnetBasicBlock, UnetResBlock, UnetUpBlock, get_padding
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from tests.test_utils import test_script_save
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TEST_CASE_RES_BASIC_BLOCK = []
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for spatial_dims in range(2, 4):
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for kernel_size in [1, 3]:
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for stride in [1, 2]:
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for norm_name in [("GROUP", {"num_groups": 16}), ("batch", {"track_running_stats": False}), "instance"]:
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for in_size in [15, 16]:
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padding = get_padding(kernel_size, stride)
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if not isinstance(padding, int):
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padding = padding[0]
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out_size = int((in_size + 2 * padding - kernel_size) / stride) + 1
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test_case = [
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{
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"spatial_dims": spatial_dims,
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"in_channels": 16,
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"out_channels": 16,
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"kernel_size": kernel_size,
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"norm_name": norm_name,
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"act_name": ("leakyrelu", {"inplace": True, "negative_slope": 0.1}),
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"stride": stride,
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},
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(1, 16, *([in_size] * spatial_dims)),
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(1, 16, *([out_size] * spatial_dims)),
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+
]
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TEST_CASE_RES_BASIC_BLOCK.append(test_case)
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+
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TEST_UP_BLOCK = []
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in_channels, out_channels = 4, 2
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+
for spatial_dims in range(2, 4):
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+
for kernel_size in [1, 3]:
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+
for stride in [1, 2]:
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+
for norm_name in ["batch", "instance"]:
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for in_size in [15, 16]:
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for trans_bias in [True, False]:
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out_size = in_size * stride
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test_case = [
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{
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"spatial_dims": spatial_dims,
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"in_channels": in_channels,
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"out_channels": out_channels,
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"kernel_size": kernel_size,
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"norm_name": norm_name,
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"stride": stride,
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"upsample_kernel_size": stride,
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"trans_bias": trans_bias,
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},
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(1, in_channels, *([in_size] * spatial_dims)),
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(1, out_channels, *([out_size] * spatial_dims)),
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(1, out_channels, *([in_size * stride] * spatial_dims)),
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]
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TEST_UP_BLOCK.append(test_case)
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+
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class TestResBasicBlock(unittest.TestCase):
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@parameterized.expand(TEST_CASE_RES_BASIC_BLOCK)
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def test_shape(self, input_param, input_shape, expected_shape):
|
78
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+
for net in [UnetResBlock(**input_param), UnetBasicBlock(**input_param)]:
|
79
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+
with eval_mode(net):
|
80
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+
result = net(torch.randn(input_shape))
|
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+
self.assertEqual(result.shape, expected_shape)
|
82
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+
|
83
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+
def test_ill_arg(self):
|
84
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+
with self.assertRaises(ValueError):
|
85
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+
UnetBasicBlock(3, 4, 2, kernel_size=3, stride=1, norm_name="norm")
|
86
|
+
with self.assertRaises(AssertionError):
|
87
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+
UnetResBlock(3, 4, 2, kernel_size=1, stride=4, norm_name="batch")
|
88
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+
|
89
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+
def test_script(self):
|
90
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+
input_param, input_shape, _ = TEST_CASE_RES_BASIC_BLOCK[0]
|
91
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+
|
92
|
+
for net_type in (UnetResBlock, UnetBasicBlock):
|
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+
net = net_type(**input_param)
|
94
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+
test_data = torch.randn(input_shape)
|
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+
test_script_save(net, test_data)
|
96
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+
|
97
|
+
|
98
|
+
class TestUpBlock(unittest.TestCase):
|
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+
@parameterized.expand(TEST_UP_BLOCK)
|
100
|
+
def test_shape(self, input_param, input_shape, expected_shape, skip_shape):
|
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+
net = UnetUpBlock(**input_param)
|
102
|
+
with eval_mode(net):
|
103
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+
result = net(torch.randn(input_shape), torch.randn(skip_shape))
|
104
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+
self.assertEqual(result.shape, expected_shape)
|
105
|
+
|
106
|
+
def test_script(self):
|
107
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+
input_param, input_shape, _, skip_shape = TEST_UP_BLOCK[0]
|
108
|
+
|
109
|
+
net = UnetUpBlock(**input_param)
|
110
|
+
test_data = torch.randn(input_shape)
|
111
|
+
skip_data = torch.randn(skip_shape)
|
112
|
+
test_script_save(net, test_data, skip_data)
|
113
|
+
|
114
|
+
|
115
|
+
if __name__ == "__main__":
|
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unittest.main()
|
@@ -0,0 +1,88 @@
|
|
1
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+
# Copyright (c) MONAI Consortium
|
2
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# Licensed under the Apache License, Version 2.0 (the "License");
|
3
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+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
from collections import OrderedDict
|
16
|
+
|
17
|
+
import torch
|
18
|
+
from parameterized import parameterized
|
19
|
+
|
20
|
+
from monai.networks.blocks.backbone_fpn_utils import _resnet_fpn_extractor
|
21
|
+
from monai.networks.blocks.feature_pyramid_network import FeaturePyramidNetwork
|
22
|
+
from monai.networks.nets.resnet import resnet50
|
23
|
+
from monai.utils import optional_import
|
24
|
+
from tests.test_utils import SkipIfBeforePyTorchVersion, test_script_save
|
25
|
+
|
26
|
+
_, has_torchvision = optional_import("torchvision")
|
27
|
+
|
28
|
+
TEST_CASES = [
|
29
|
+
[
|
30
|
+
{"spatial_dims": 3, "in_channels_list": [32, 64], "out_channels": 6},
|
31
|
+
((7, 32, 16, 32, 64), (7, 64, 8, 16, 32)),
|
32
|
+
((7, 6, 16, 32, 64), (7, 6, 8, 16, 32)),
|
33
|
+
],
|
34
|
+
[
|
35
|
+
{"spatial_dims": 2, "in_channels_list": [32, 64], "out_channels": 6},
|
36
|
+
((7, 32, 16, 32), (7, 64, 8, 16)),
|
37
|
+
((7, 6, 16, 32), (7, 6, 8, 16)),
|
38
|
+
],
|
39
|
+
]
|
40
|
+
|
41
|
+
TEST_CASES2 = [
|
42
|
+
[{"spatial_dims": 3, "returned_layers": [1]}, (7, 3, 32, 64, 32), ((7, 256, 16, 32, 16), (7, 256, 8, 16, 8))]
|
43
|
+
]
|
44
|
+
|
45
|
+
|
46
|
+
class TestFPNBlock(unittest.TestCase):
|
47
|
+
@parameterized.expand(TEST_CASES)
|
48
|
+
def test_fpn_block(self, input_param, input_shape, expected_shape):
|
49
|
+
net = FeaturePyramidNetwork(**input_param)
|
50
|
+
data = OrderedDict()
|
51
|
+
data["feat0"] = torch.rand(input_shape[0])
|
52
|
+
data["feat1"] = torch.rand(input_shape[1])
|
53
|
+
result = net(data)
|
54
|
+
self.assertEqual(result["feat0"].shape, expected_shape[0])
|
55
|
+
self.assertEqual(result["feat1"].shape, expected_shape[1])
|
56
|
+
|
57
|
+
@parameterized.expand(TEST_CASES)
|
58
|
+
@SkipIfBeforePyTorchVersion((1, 9, 1))
|
59
|
+
def test_script(self, input_param, input_shape, expected_shape):
|
60
|
+
# test whether support torchscript
|
61
|
+
net = FeaturePyramidNetwork(**input_param)
|
62
|
+
data = OrderedDict()
|
63
|
+
data["feat0"] = torch.rand(input_shape[0])
|
64
|
+
data["feat1"] = torch.rand(input_shape[1])
|
65
|
+
test_script_save(net, data)
|
66
|
+
|
67
|
+
|
68
|
+
@unittest.skipUnless(has_torchvision, "Requires torchvision")
|
69
|
+
class TestFPN(unittest.TestCase):
|
70
|
+
@parameterized.expand(TEST_CASES2)
|
71
|
+
def test_fpn(self, input_param, input_shape, expected_shape):
|
72
|
+
net = _resnet_fpn_extractor(backbone=resnet50(), spatial_dims=input_param["spatial_dims"], returned_layers=[1])
|
73
|
+
data = torch.rand(input_shape)
|
74
|
+
result = net(data)
|
75
|
+
self.assertEqual(result["0"].shape, expected_shape[0])
|
76
|
+
self.assertEqual(result["pool"].shape, expected_shape[1])
|
77
|
+
|
78
|
+
@parameterized.expand(TEST_CASES2)
|
79
|
+
@SkipIfBeforePyTorchVersion((1, 9, 1))
|
80
|
+
def test_script(self, input_param, input_shape, expected_shape):
|
81
|
+
# test whether support torchscript
|
82
|
+
net = _resnet_fpn_extractor(backbone=resnet50(), spatial_dims=input_param["spatial_dims"], returned_layers=[1])
|
83
|
+
data = torch.rand(input_shape)
|
84
|
+
test_script_save(net, data)
|
85
|
+
|
86
|
+
|
87
|
+
if __name__ == "__main__":
|
88
|
+
unittest.main()
|
@@ -0,0 +1,121 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.networks import eval_mode
|
20
|
+
from monai.networks.blocks.localnet_block import (
|
21
|
+
LocalNetDownSampleBlock,
|
22
|
+
LocalNetFeatureExtractorBlock,
|
23
|
+
LocalNetUpSampleBlock,
|
24
|
+
)
|
25
|
+
|
26
|
+
TEST_CASE_DOWN_SAMPLE = [
|
27
|
+
[{"spatial_dims": spatial_dims, "in_channels": 2, "out_channels": 4, "kernel_size": 3}] for spatial_dims in [2, 3]
|
28
|
+
]
|
29
|
+
|
30
|
+
TEST_CASE_UP_SAMPLE = [
|
31
|
+
[
|
32
|
+
{
|
33
|
+
"spatial_dims": spatial_dims,
|
34
|
+
"in_channels": 4,
|
35
|
+
"out_channels": 2,
|
36
|
+
"mode": "bilinear" if spatial_dims == 2 else "trilinear",
|
37
|
+
}
|
38
|
+
]
|
39
|
+
for spatial_dims in [2, 3]
|
40
|
+
]
|
41
|
+
|
42
|
+
TEST_CASE_EXTRACT = [
|
43
|
+
[{"spatial_dims": spatial_dims, "in_channels": 2, "out_channels": 3, "act": act, "initializer": initializer}]
|
44
|
+
for spatial_dims, act, initializer in zip([2, 3], ["sigmoid", None], ["kaiming_uniform", "zeros"])
|
45
|
+
]
|
46
|
+
|
47
|
+
in_size = 4
|
48
|
+
|
49
|
+
|
50
|
+
class TestLocalNetDownSampleBlock(unittest.TestCase):
|
51
|
+
|
52
|
+
@parameterized.expand(TEST_CASE_DOWN_SAMPLE)
|
53
|
+
def test_shape(self, input_param):
|
54
|
+
net = LocalNetDownSampleBlock(**input_param)
|
55
|
+
input_shape = (1, input_param["in_channels"], *([in_size] * input_param["spatial_dims"]))
|
56
|
+
expect_mid_shape = (1, input_param["out_channels"], *([in_size] * input_param["spatial_dims"]))
|
57
|
+
expect_x_shape = (1, input_param["out_channels"], *([in_size / 2] * input_param["spatial_dims"]))
|
58
|
+
with eval_mode(net):
|
59
|
+
x, mid = net(torch.randn(input_shape))
|
60
|
+
self.assertEqual(x.shape, expect_x_shape)
|
61
|
+
self.assertEqual(mid.shape, expect_mid_shape)
|
62
|
+
|
63
|
+
def test_ill_arg(self):
|
64
|
+
# even kernel_size
|
65
|
+
with self.assertRaises(NotImplementedError):
|
66
|
+
LocalNetDownSampleBlock(spatial_dims=2, in_channels=2, out_channels=4, kernel_size=4)
|
67
|
+
|
68
|
+
@parameterized.expand(TEST_CASE_DOWN_SAMPLE)
|
69
|
+
def test_ill_shape(self, input_param):
|
70
|
+
net = LocalNetDownSampleBlock(**input_param)
|
71
|
+
input_shape = (1, input_param["in_channels"], *([5] * input_param["spatial_dims"]))
|
72
|
+
with self.assertRaises(ValueError):
|
73
|
+
with eval_mode(net):
|
74
|
+
net(torch.randn(input_shape))
|
75
|
+
|
76
|
+
|
77
|
+
class TestLocalNetUpSampleBlock(unittest.TestCase):
|
78
|
+
|
79
|
+
@parameterized.expand(TEST_CASE_UP_SAMPLE)
|
80
|
+
def test_shape(self, input_param):
|
81
|
+
net = LocalNetUpSampleBlock(**input_param)
|
82
|
+
input_shape = (1, input_param["in_channels"], *([in_size] * input_param["spatial_dims"]))
|
83
|
+
mid_shape = (1, input_param["out_channels"], *([in_size * 2] * input_param["spatial_dims"]))
|
84
|
+
expected_shape = mid_shape
|
85
|
+
with eval_mode(net):
|
86
|
+
result = net(torch.randn(input_shape), torch.randn(mid_shape))
|
87
|
+
self.assertEqual(result.shape, expected_shape)
|
88
|
+
|
89
|
+
def test_ill_arg(self):
|
90
|
+
# channel unmatch
|
91
|
+
with self.assertRaises(ValueError):
|
92
|
+
LocalNetUpSampleBlock(spatial_dims=2, in_channels=2, out_channels=2)
|
93
|
+
|
94
|
+
@parameterized.expand(TEST_CASE_UP_SAMPLE)
|
95
|
+
def test_ill_shape(self, input_param):
|
96
|
+
net = LocalNetUpSampleBlock(**input_param)
|
97
|
+
input_shape = (1, input_param["in_channels"], *([in_size] * input_param["spatial_dims"]))
|
98
|
+
mid_shape = (1, input_param["out_channels"], *([in_size] * input_param["spatial_dims"]))
|
99
|
+
with self.assertRaises(ValueError):
|
100
|
+
with eval_mode(net):
|
101
|
+
net(torch.randn(input_shape), torch.randn(mid_shape))
|
102
|
+
|
103
|
+
|
104
|
+
class TestExtractBlock(unittest.TestCase):
|
105
|
+
|
106
|
+
@parameterized.expand(TEST_CASE_EXTRACT)
|
107
|
+
def test_shape(self, input_param):
|
108
|
+
net = LocalNetFeatureExtractorBlock(**input_param)
|
109
|
+
input_shape = (1, input_param["in_channels"], *([in_size] * input_param["spatial_dims"]))
|
110
|
+
expected_shape = (1, input_param["out_channels"], *([in_size] * input_param["spatial_dims"]))
|
111
|
+
with eval_mode(net):
|
112
|
+
result = net(torch.randn(input_shape))
|
113
|
+
self.assertEqual(result.shape, expected_shape)
|
114
|
+
|
115
|
+
def test_ill_arg(self):
|
116
|
+
with self.assertRaises(ValueError):
|
117
|
+
LocalNetFeatureExtractorBlock(spatial_dims=2, in_channels=2, out_channels=2, initializer="none")
|
118
|
+
|
119
|
+
|
120
|
+
if __name__ == "__main__":
|
121
|
+
unittest.main()
|