monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
- tests/networks/nets/test_patch_gan_dicriminator.py +179 -0
- tests/networks/nets/test_quicknat.py +57 -0
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- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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import numpy as np
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import torch
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from parameterized import parameterized
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import monai.transforms.intensity.array as ia
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import monai.transforms.spatial.array as sa
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import monai.transforms.spatial.dictionary as sd
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from monai.data import MetaTensor
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from monai.transforms import (
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InvertibleTransform,
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OneOf,
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RandScaleIntensity,
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RandScaleIntensityd,
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RandShiftIntensity,
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RandShiftIntensityd,
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Resize,
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Resized,
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Transform,
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)
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from monai.transforms.compose import Compose
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from monai.transforms.transform import MapTransform
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from monai.utils.enums import TraceKeys
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class X(Transform):
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def __call__(self, x):
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return x
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class Y(Transform):
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def __call__(self, x):
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return x
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class A(Transform):
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def __call__(self, x):
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return x + 1
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class B(Transform):
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def __call__(self, x):
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return x + 2
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class C(Transform):
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def __call__(self, x):
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return x + 3
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class MapBase(MapTransform):
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def __init__(self, keys):
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super().__init__(keys)
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self.fwd_fn, self.inv_fn = None, None
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def __call__(self, data):
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d = deepcopy(dict(data))
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for key in self.key_iterator(d):
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d[key] = self.fwd_fn(d[key])
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return d
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class NonInv(MapBase):
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def __init__(self, keys):
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super().__init__(keys)
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self.fwd_fn = lambda x: x * 2
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class Inv(MapBase, InvertibleTransform):
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def __call__(self, data):
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d = deepcopy(dict(data))
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for key in self.key_iterator(d):
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d[key] = self.fwd_fn(d[key])
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self.push_transform(d, key)
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return d
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def inverse(self, data):
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d = deepcopy(dict(data))
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for key in self.key_iterator(d):
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d[key] = self.inv_fn(d[key])
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self.pop_transform(d, key)
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return d
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class InvA(Inv):
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def __init__(self, keys):
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super().__init__(keys)
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self.fwd_fn = lambda x: x + 1
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self.inv_fn = lambda x: x - 1
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class InvB(Inv):
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def __init__(self, keys):
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super().__init__(keys)
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self.fwd_fn = lambda x: x + 100
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self.inv_fn = lambda x: x - 100
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TESTS = [((X(), Y(), X()), (1, 2, 1), (0.25, 0.5, 0.25))]
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KEYS = ["x", "y"]
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TEST_INVERSES = [
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(OneOf((InvA(KEYS), InvB(KEYS))), True, True),
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(OneOf((OneOf((InvA(KEYS), InvB(KEYS))), OneOf((InvB(KEYS), InvA(KEYS))))), True, False),
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(OneOf((Compose((InvA(KEYS), InvB(KEYS))), Compose((InvB(KEYS), InvA(KEYS))))), True, False),
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(OneOf((NonInv(KEYS), NonInv(KEYS))), False, False),
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]
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class TestOneOf(unittest.TestCase):
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@parameterized.expand(TESTS)
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def test_normalize_weights(self, transforms, input_weights, expected_weights):
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tr = OneOf(transforms, input_weights)
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self.assertTupleEqual(tr.weights, expected_weights)
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def test_no_weights_arg(self):
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p = OneOf((X(), Y(), X(), Y()))
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expected_weights = (0.25,) * 4
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self.assertTupleEqual(p.weights, expected_weights)
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def test_len_and_flatten(self):
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p1 = OneOf((X(), Y()), (1, 3)) # 0.25, 0.75
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p2 = OneOf((Y(), Y()), (2, 2)) # 0.5. 0.5
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p = OneOf((p1, p2, X()), (1, 2, 1)) # 0.25, 0.5, 0.25
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expected_order = (X, Y, Y, Y, X)
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expected_weights = (0.25 * 0.25, 0.25 * 0.75, 0.5 * 0.5, 0.5 * 0.5, 0.25)
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self.assertEqual(len(p), len(expected_order))
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self.assertTupleEqual(p.flatten().weights, expected_weights)
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def test_compose_flatten_does_not_affect_one_of(self):
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p = Compose([A(), B(), OneOf([C(), Inv(KEYS), Compose([X(), Y()])])])
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f = p.flatten()
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# in this case the flattened transform should be the same.
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def _match(a, b):
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self.assertEqual(type(a), type(b))
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for a_, b_ in zip(a.transforms, b.transforms):
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self.assertEqual(type(a_), type(b_))
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if isinstance(a_, (Compose, OneOf)):
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_match(a_, b_)
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_match(p, f)
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@parameterized.expand(TEST_INVERSES)
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def test_inverse(self, transform, invertible, use_metatensor):
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data = {k: MetaTensor((i + 1) * 10.0) for i, k in enumerate(KEYS)}
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fwd_data = transform(data)
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if invertible:
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for k in KEYS:
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t = fwd_data[k].applied_operations[-1]
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# make sure the OneOf index was stored
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self.assertEqual(t[TraceKeys.CLASS_NAME], OneOf.__name__)
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# make sure index exists and is in bounds
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self.assertTrue(0 <= t[TraceKeys.EXTRA_INFO]["index"] < len(transform))
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# call the inverse
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fwd_inv_data = transform.inverse(fwd_data)
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if invertible:
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for k in KEYS:
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# check data is same as original (and different from forward)
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self.assertEqual(fwd_inv_data[k], data[k])
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self.assertNotEqual(fwd_inv_data[k], fwd_data[k])
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else:
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# if not invertible, should not change the data
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self.assertDictEqual(fwd_data, fwd_inv_data)
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def test_inverse_compose(self):
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transform = Compose(
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[
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Resized(keys="img", spatial_size=[100, 100, 100]),
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OneOf(
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[
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RandScaleIntensityd(keys="img", factors=0.5, prob=1.0),
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RandShiftIntensityd(keys="img", offsets=0.5, prob=1.0),
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]
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),
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OneOf(
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[
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RandScaleIntensityd(keys="img", factors=0.5, prob=1.0),
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RandShiftIntensityd(keys="img", offsets=0.5, prob=1.0),
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]
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),
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]
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)
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transform.set_random_state(seed=0)
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result = transform({"img": np.ones((1, 101, 102, 103))})
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result = transform.inverse(result)
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# invert to the original spatial shape
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self.assertTupleEqual(result["img"].shape, (1, 101, 102, 103))
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def test_inverse_metatensor(self):
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transform = Compose(
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[
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Resize(spatial_size=[100, 100, 100]),
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OneOf([RandScaleIntensity(factors=0.5, prob=1.0), RandShiftIntensity(offsets=0.5, prob=1.0)]),
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OneOf([RandScaleIntensity(factors=0.5, prob=1.0), RandShiftIntensity(offsets=0.5, prob=1.0)]),
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]
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)
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transform.set_random_state(seed=0)
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result = transform(np.ones((1, 101, 102, 103)))
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self.assertTupleEqual(result.shape, (1, 100, 100, 100))
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result = transform.inverse(result)
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self.assertTupleEqual(result.shape, (1, 101, 102, 103))
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def test_one_of(self):
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p = OneOf((A(), B(), C()), (1, 2, 1))
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counts = [0] * 3
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for _i in range(10000):
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out = p(1.0)
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counts[int(out - 2)] += 1
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self.assertAlmostEqual(counts[0] / 10000, 0.25, delta=1.0)
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self.assertAlmostEqual(counts[1] / 10000, 0.50, delta=1.0)
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self.assertAlmostEqual(counts[2] / 10000, 0.25, delta=1.0)
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TEST_ONEOF_EXTENDED_TEST_CASES = [
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[None, tuple()],
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[None, (sa.Rotate(np.pi / 8),)],
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[None, (sa.Flip(0), sa.Flip(1), sa.Rotate90(1), sa.Zoom(0.8), ia.NormalizeIntensity())],
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[("a",), (sd.Rotated(("a",), np.pi / 8),)],
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]
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class TestOneOfAPITests(unittest.TestCase):
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@staticmethod
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def data_from_keys(keys):
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if keys is None:
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data = torch.unsqueeze(torch.tensor(np.arange(12 * 16).reshape(12, 16)), dim=0)
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else:
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data = {}
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for i_k, k in enumerate(keys):
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data[k] = torch.unsqueeze(torch.tensor(np.arange(12 * 16)).reshape(12, 16) + i_k * 192, dim=0)
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return data
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@parameterized.expand(TEST_ONEOF_EXTENDED_TEST_CASES)
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def test_execute_change_start_end(self, keys, pipeline):
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data = self.data_from_keys(keys)
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c = OneOf(deepcopy(pipeline))
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with self.assertRaises(ValueError):
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c(data, start=1)
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with self.assertRaises(ValueError):
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c(data, start=1)
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c = OneOf(deepcopy(pipeline))
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with self.assertRaises(ValueError):
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c(data, end=1)
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with self.assertRaises(ValueError):
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c(data, end=1)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import random
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import unittest
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from functools import wraps
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.data import CacheDataset, DataLoader
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from monai.data.utils import decollate_batch, pad_list_data_collate
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from monai.transforms import (
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BatchInverseTransform,
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Compose,
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PadListDataCollate,
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RandRotate,
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RandRotate90,
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RandRotate90d,
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RandRotated,
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RandSpatialCrop,
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RandSpatialCropd,
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RandZoom,
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RandZoomd,
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ToTensor,
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)
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from monai.utils import set_determinism
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@wraps(pad_list_data_collate)
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def _testing_collate(x):
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return pad_list_data_collate(batch=x, method="end", mode="constant")
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TESTS: list[tuple] = []
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for pad_collate in [_testing_collate, PadListDataCollate(method="end", mode="constant")]:
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TESTS.append((dict, pad_collate, RandSpatialCropd("image", roi_size=[8, 7], random_size=True)))
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TESTS.append((dict, pad_collate, RandRotated("image", prob=1, range_x=np.pi, keep_size=False, dtype=np.float64)))
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TESTS.append((dict, pad_collate, RandZoomd("image", prob=1, min_zoom=1.1, max_zoom=2.0, keep_size=False)))
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TESTS.append(
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(dict, pad_collate, Compose([RandRotate90d("image", prob=1, max_k=3), RandRotate90d("image", prob=1, max_k=4)]))
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+
)
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+
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TESTS.append((list, pad_collate, RandSpatialCrop(roi_size=[8, 7], random_size=True)))
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TESTS.append((list, pad_collate, RandRotate(prob=1, range_x=np.pi, keep_size=False, dtype=np.float64)))
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TESTS.append((list, pad_collate, RandZoom(prob=1, min_zoom=1.1, max_zoom=2.0, keep_size=False)))
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TESTS.append((list, pad_collate, Compose([RandRotate90(prob=1, max_k=2), ToTensor()])))
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+
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class _Dataset(torch.utils.data.Dataset):
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def __init__(self, images, labels, transforms):
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self.images = images
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self.labels = labels
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self.transform = transforms
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+
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def __len__(self):
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return len(self.images)
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+
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def __getitem__(self, index):
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return self.transform(self.images[index]), self.labels[index]
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+
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class TestPadCollation(unittest.TestCase):
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+
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+
def setUp(self) -> None:
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set_determinism(seed=0)
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# image is non square to throw rotation errors
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im = np.arange(0, 10 * 9).reshape(1, 10, 9)
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num_elements = 20
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self.dict_data = [{"image": im} for _ in range(num_elements)]
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self.list_data = [im for _ in range(num_elements)]
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self.list_labels = [random.randint(0, 1) for _ in range(num_elements)]
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+
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def tearDown(self) -> None:
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set_determinism(None)
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+
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@parameterized.expand(TESTS)
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def test_pad_collation(self, t_type, collate_method, transform):
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if t_type is dict:
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dataset = CacheDataset(self.dict_data, transform, progress=False)
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else:
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dataset = _Dataset(self.list_data, self.list_labels, transform)
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+
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# Default collation should raise an error
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loader_fail = DataLoader(dataset, batch_size=10)
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with self.assertRaises(RuntimeError):
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for _ in loader_fail:
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pass
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+
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# Padded collation shouldn't
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loader = DataLoader(dataset, batch_size=10, collate_fn=collate_method)
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# check collation in forward direction
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for data in loader:
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+
if t_type is dict:
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shapes = []
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decollated_data = decollate_batch(data)
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+
for d in decollated_data:
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+
output = PadListDataCollate.inverse(d)
|
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+
shapes.append(output["image"].shape)
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self.assertTrue(len(output["image"].applied_operations), len(dataset.transform.transforms))
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self.assertTrue(len(set(shapes)) > 1) # inverted shapes must be different because of random xforms
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+
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+
if t_type is dict:
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+
batch_inverse = BatchInverseTransform(dataset.transform, loader)
|
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+
for data in loader:
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+
output = batch_inverse(data)
|
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self.assertEqual(output[0]["image"].shape, (1, 10, 9))
|
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+
|
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+
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+
if __name__ == "__main__":
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unittest.main()
|
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1
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+
# Copyright (c) MONAI Consortium
|
2
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+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
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+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
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+
# http://www.apache.org/licenses/LICENSE-2.0
|
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+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
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+
# limitations under the License.
|
11
|
+
|
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|
+
from __future__ import annotations
|
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+
|
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+
import unittest
|
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+
|
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|
+
import torch
|
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+
import torch.nn as nn
|
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+
import torch.optim as optim
|
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|
+
from parameterized import parameterized
|
20
|
+
|
21
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+
from monai.losses import BendingEnergyLoss, GlobalMutualInformationLoss, LocalNormalizedCrossCorrelationLoss
|
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+
from tests.test_utils import SkipIfBeforePyTorchVersion
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+
|
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+
TEST_CASES = [
|
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+
[BendingEnergyLoss, {}, ["pred"], 3],
|
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+
[LocalNormalizedCrossCorrelationLoss, {"kernel_size": 7, "kernel_type": "rectangular"}, ["pred", "target"]],
|
27
|
+
[LocalNormalizedCrossCorrelationLoss, {"kernel_size": 5, "kernel_type": "triangular"}, ["pred", "target"]],
|
28
|
+
[LocalNormalizedCrossCorrelationLoss, {"kernel_size": 3, "kernel_type": "gaussian"}, ["pred", "target"]],
|
29
|
+
[GlobalMutualInformationLoss, {"num_bins": 10}, ["pred", "target"]],
|
30
|
+
[GlobalMutualInformationLoss, {"kernel_type": "b-spline", "num_bins": 10}, ["pred", "target"]],
|
31
|
+
]
|
32
|
+
|
33
|
+
|
34
|
+
class TestRegLossIntegration(unittest.TestCase):
|
35
|
+
def setUp(self):
|
36
|
+
torch.backends.cudnn.deterministic = True
|
37
|
+
torch.backends.cudnn.benchmark = False
|
38
|
+
torch.manual_seed(0)
|
39
|
+
self.device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu:0")
|
40
|
+
|
41
|
+
def tearDown(self):
|
42
|
+
torch.backends.cudnn.deterministic = False
|
43
|
+
torch.backends.cudnn.benchmark = True
|
44
|
+
|
45
|
+
@parameterized.expand(TEST_CASES)
|
46
|
+
@SkipIfBeforePyTorchVersion((1, 9))
|
47
|
+
def test_convergence(self, loss_type, loss_args, forward_args, pred_channels=1):
|
48
|
+
"""
|
49
|
+
The goal of this test is to assess if the gradient of the loss function
|
50
|
+
is correct by testing if we can train a one layer neural network
|
51
|
+
to segment one image.
|
52
|
+
We verify that the loss is decreasing in almost all SGD steps.
|
53
|
+
"""
|
54
|
+
learning_rate = 0.001
|
55
|
+
max_iter = 100
|
56
|
+
|
57
|
+
# define a simple 3d example
|
58
|
+
target = torch.rand((1, 1, 5, 5, 5), device=self.device)
|
59
|
+
image = 12 * target + 27
|
60
|
+
image = image.to(device=self.device)
|
61
|
+
|
62
|
+
# define a one layer model
|
63
|
+
class OnelayerNet(nn.Module):
|
64
|
+
def __init__(self):
|
65
|
+
super().__init__()
|
66
|
+
self.layer = nn.Sequential(
|
67
|
+
nn.Conv3d(in_channels=1, out_channels=1, kernel_size=3, padding=1),
|
68
|
+
nn.ReLU(),
|
69
|
+
nn.Conv3d(in_channels=1, out_channels=pred_channels, kernel_size=3, padding=1),
|
70
|
+
)
|
71
|
+
|
72
|
+
def forward(self, x):
|
73
|
+
return self.layer(x)
|
74
|
+
|
75
|
+
# initialise the network
|
76
|
+
net = OnelayerNet().to(self.device)
|
77
|
+
|
78
|
+
# initialize the loss
|
79
|
+
loss = loss_type(**loss_args).to(self.device)
|
80
|
+
|
81
|
+
# initialize a SGD optimizer
|
82
|
+
optimizer = optim.Adam(net.parameters(), lr=learning_rate)
|
83
|
+
|
84
|
+
# declare first for pylint
|
85
|
+
init_loss = None
|
86
|
+
|
87
|
+
# train the network
|
88
|
+
for it in range(max_iter):
|
89
|
+
# set the gradient to zero
|
90
|
+
optimizer.zero_grad()
|
91
|
+
|
92
|
+
# forward pass
|
93
|
+
output = net(image)
|
94
|
+
loss_input = {"pred": output, "target": target}
|
95
|
+
|
96
|
+
loss_val = loss(**{k: loss_input[k] for k in forward_args})
|
97
|
+
if it == 0:
|
98
|
+
init_loss = loss_val
|
99
|
+
|
100
|
+
# backward pass
|
101
|
+
loss_val.backward()
|
102
|
+
optimizer.step()
|
103
|
+
self.assertGreater(init_loss, loss_val, "loss did not decrease")
|
104
|
+
|
105
|
+
|
106
|
+
if __name__ == "__main__":
|
107
|
+
unittest.main()
|
@@ -0,0 +1,154 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.apps.detection.utils.predict_utils import ensure_dict_value_to_list_, predict_with_inferer
|
20
|
+
from monai.inferers import SlidingWindowInferer
|
21
|
+
|
22
|
+
TEST_CASE_1 = [ # 3D, batch 3, 2 input channel
|
23
|
+
{
|
24
|
+
"pretrained": False,
|
25
|
+
"spatial_dims": 3,
|
26
|
+
"n_input_channels": 2,
|
27
|
+
"num_classes": 3,
|
28
|
+
"conv1_t_size": 7,
|
29
|
+
"conv1_t_stride": (2, 2, 2),
|
30
|
+
},
|
31
|
+
(3, 2, 32, 64, 48),
|
32
|
+
]
|
33
|
+
|
34
|
+
TEST_CASE_2 = [ # 2D, batch 2, 1 input channel
|
35
|
+
{
|
36
|
+
"pretrained": False,
|
37
|
+
"spatial_dims": 2,
|
38
|
+
"n_input_channels": 1,
|
39
|
+
"num_classes": 3,
|
40
|
+
"conv1_t_size": [7, 7],
|
41
|
+
"conv1_t_stride": [2, 2],
|
42
|
+
},
|
43
|
+
(2, 1, 32, 64),
|
44
|
+
]
|
45
|
+
|
46
|
+
TEST_CASE_2_A = [ # 2D, batch 2, 1 input channel, shortcut type A
|
47
|
+
{
|
48
|
+
"pretrained": False,
|
49
|
+
"spatial_dims": 2,
|
50
|
+
"n_input_channels": 1,
|
51
|
+
"num_classes": 3,
|
52
|
+
"shortcut_type": "A",
|
53
|
+
"conv1_t_size": (7, 7),
|
54
|
+
"conv1_t_stride": 2,
|
55
|
+
},
|
56
|
+
(2, 1, 32, 64),
|
57
|
+
]
|
58
|
+
|
59
|
+
TEST_CASE_3 = [ # 1D, batch 1, 2 input channels
|
60
|
+
{
|
61
|
+
"pretrained": False,
|
62
|
+
"spatial_dims": 1,
|
63
|
+
"n_input_channels": 2,
|
64
|
+
"num_classes": 3,
|
65
|
+
"conv1_t_size": [3],
|
66
|
+
"conv1_t_stride": 1,
|
67
|
+
},
|
68
|
+
(1, 2, 32),
|
69
|
+
]
|
70
|
+
|
71
|
+
TEST_CASE_3_A = [ # 1D, batch 1, 2 input channels
|
72
|
+
{"pretrained": False, "spatial_dims": 1, "n_input_channels": 2, "num_classes": 3, "shortcut_type": "A"},
|
73
|
+
(1, 2, 32),
|
74
|
+
]
|
75
|
+
|
76
|
+
TEST_CASE_4 = [ # 2D, batch 2, 1 input channel
|
77
|
+
{"pretrained": False, "spatial_dims": 2, "n_input_channels": 1, "num_classes": 3, "feed_forward": False},
|
78
|
+
(2, 1, 32, 64),
|
79
|
+
]
|
80
|
+
|
81
|
+
TEST_CASES = []
|
82
|
+
TEST_CASES = [TEST_CASE_1, TEST_CASE_2, TEST_CASE_2_A]
|
83
|
+
|
84
|
+
TEST_CASES_TS = [TEST_CASE_1]
|
85
|
+
|
86
|
+
|
87
|
+
class NaiveNetwork(torch.nn.Module):
|
88
|
+
|
89
|
+
def __init__(self, spatial_dims, num_classes, **kwargs):
|
90
|
+
super().__init__()
|
91
|
+
self.spatial_dims = spatial_dims
|
92
|
+
self.num_classes = num_classes
|
93
|
+
self.num_anchors = 1
|
94
|
+
self.cls_key = "cls"
|
95
|
+
self.box_reg_key = "box_reg"
|
96
|
+
self.size_divisible = 1
|
97
|
+
|
98
|
+
def forward(self, images):
|
99
|
+
out_cls_shape = (images.shape[0], self.num_classes * self.num_anchors) + images.shape[-self.spatial_dims :]
|
100
|
+
out_box_reg_shape = (images.shape[0], 2 * self.spatial_dims * self.num_anchors) + images.shape[
|
101
|
+
-self.spatial_dims :
|
102
|
+
]
|
103
|
+
return {self.cls_key: torch.randn(out_cls_shape), self.box_reg_key: [torch.randn(out_box_reg_shape)]}
|
104
|
+
|
105
|
+
|
106
|
+
class NaiveNetwork2(torch.nn.Module):
|
107
|
+
|
108
|
+
def __init__(self, spatial_dims, num_classes, **kwargs):
|
109
|
+
super().__init__()
|
110
|
+
self.spatial_dims = spatial_dims
|
111
|
+
self.num_classes = num_classes
|
112
|
+
self.num_anchors = 1
|
113
|
+
self.cls_key = "cls"
|
114
|
+
self.box_reg_key = "box_reg"
|
115
|
+
self.size_divisible = 1
|
116
|
+
|
117
|
+
def forward(self, images):
|
118
|
+
out_cls_shape = (images.shape[0], self.num_classes * self.num_anchors) + images.shape[-self.spatial_dims :]
|
119
|
+
out_box_reg_shape = (images.shape[0], 2 * self.spatial_dims * self.num_anchors) + images.shape[
|
120
|
+
-self.spatial_dims :
|
121
|
+
]
|
122
|
+
return {self.cls_key: [torch.randn(out_cls_shape)] * 2, self.box_reg_key: [torch.randn(out_box_reg_shape)] * 2}
|
123
|
+
|
124
|
+
|
125
|
+
class TestPredictor(unittest.TestCase):
|
126
|
+
|
127
|
+
@parameterized.expand(TEST_CASES)
|
128
|
+
def test_naive_predictor(self, input_param, input_shape):
|
129
|
+
net = NaiveNetwork(**input_param)
|
130
|
+
net2 = NaiveNetwork2(**input_param)
|
131
|
+
inferer = SlidingWindowInferer(roi_size=16, overlap=0.25, cache_roi_weight_map=True)
|
132
|
+
network_output_keys = ["cls", "box_reg"]
|
133
|
+
|
134
|
+
input_data = torch.randn(input_shape)
|
135
|
+
|
136
|
+
result = predict_with_inferer(input_data, net, network_output_keys, inferer=inferer)
|
137
|
+
self.assertTrue(len(result["cls"]) == 1)
|
138
|
+
|
139
|
+
result = net(input_data)
|
140
|
+
self.assertTrue(len(result["cls"]) == input_data.shape[0])
|
141
|
+
ensure_dict_value_to_list_(result)
|
142
|
+
self.assertTrue(len(result["cls"]) == 1)
|
143
|
+
|
144
|
+
result = predict_with_inferer(input_data, net2, network_output_keys, inferer=inferer)
|
145
|
+
self.assertTrue(len(result["cls"]) == 2)
|
146
|
+
|
147
|
+
result = net2(input_data)
|
148
|
+
self.assertTrue(len(result["cls"]) == 2)
|
149
|
+
ensure_dict_value_to_list_(result)
|
150
|
+
self.assertTrue(len(result["cls"]) == 2)
|
151
|
+
|
152
|
+
|
153
|
+
if __name__ == "__main__":
|
154
|
+
unittest.main()
|