monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
- tests/networks/nets/test_patch_gan_dicriminator.py +179 -0
- tests/networks/nets/test_quicknat.py +57 -0
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- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import os
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import unittest
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from pathlib import Path
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import numpy as np
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from parameterized import parameterized
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from monai.transforms import SignalRandDrop
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from monai.utils.type_conversion import convert_to_tensor
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TESTS_PATH = Path(__file__).parents[1]
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TEST_SIGNAL = os.path.join(TESTS_PATH, "testing_data", "signal.npy")
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VALID_CASES = [([0.0, 1.0],), ([0.01, 0.1],)]
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class TestSignalRandDropNumpy(unittest.TestCase):
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@parameterized.expand(VALID_CASES)
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def test_correct_parameters_multi_channels(self, boundaries):
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self.assertIsInstance(SignalRandDrop(boundaries), SignalRandDrop)
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sig = np.load(TEST_SIGNAL)
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droped = SignalRandDrop(boundaries)
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dropedsignal = droped(sig)
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self.assertEqual(dropedsignal.shape[1], sig.shape[1])
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class TestSignalRandDropTorch(unittest.TestCase):
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@parameterized.expand(VALID_CASES)
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def test_correct_parameters_multi_channels(self, boundaries):
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self.assertIsInstance(SignalRandDrop(boundaries), SignalRandDrop)
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sig = convert_to_tensor(np.load(TEST_SIGNAL))
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droped = SignalRandDrop(boundaries)
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dropedsignal = droped(sig)
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self.assertEqual(dropedsignal.shape[1], sig.shape[1])
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import os
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import unittest
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from pathlib import Path
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import numpy as np
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from parameterized import parameterized
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from monai.transforms import SignalRandScale
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from monai.utils.type_conversion import convert_to_tensor
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TESTS_PATH = Path(__file__).parents[1]
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TEST_SIGNAL = os.path.join(TESTS_PATH, "testing_data", "signal.npy")
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VALID_CASES = [([-1.0, 1.0],), ([0.01, 0.1],)]
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class TestSignalRandScaleNumpy(unittest.TestCase):
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@parameterized.expand(VALID_CASES)
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def test_correct_parameters_multi_channels(self, boundaries):
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self.assertIsInstance(SignalRandScale(boundaries), SignalRandScale)
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sig = np.load(TEST_SIGNAL)
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scaled = SignalRandScale(boundaries)
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scaledsignal = scaled(sig)
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self.assertEqual(scaledsignal.shape[1], sig.shape[1])
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class TestSignalRandScaleTorch(unittest.TestCase):
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@parameterized.expand(VALID_CASES)
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def test_correct_parameters_multi_channels(self, boundaries):
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self.assertIsInstance(SignalRandScale(boundaries), SignalRandScale)
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sig = convert_to_tensor(np.load(TEST_SIGNAL))
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scaled = SignalRandScale(boundaries)
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scaledsignal = scaled(sig)
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self.assertEqual(scaledsignal.shape[1], sig.shape[1])
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import os
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import unittest
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from pathlib import Path
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from unittest import skipUnless
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import numpy as np
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from parameterized import parameterized
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from monai.transforms.signal.array import SignalRandShift
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from monai.utils import optional_import
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from monai.utils.type_conversion import convert_to_tensor
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_, has_scipy = optional_import("scipy")
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TESTS_PATH = Path(__file__).parents[1]
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TEST_SIGNAL = os.path.join(TESTS_PATH, "testing_data", "signal.npy")
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VALID_CASES = [("wrap", 0.0, [-1.0, 1.0])]
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@skipUnless(has_scipy, "scipy required")
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class TestSignalRandShiftNumpy(unittest.TestCase):
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@parameterized.expand(VALID_CASES)
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def test_correct_parameters_multi_channels(self, mode, filling, boundaries):
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self.assertIsInstance(SignalRandShift(mode, filling, boundaries), SignalRandShift)
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sig = np.load(TEST_SIGNAL)
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shifted = SignalRandShift(mode, filling, boundaries)
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shiftedsignal = shifted(sig)
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self.assertEqual(shiftedsignal.shape[1], sig.shape[1])
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@skipUnless(has_scipy, "scipy required")
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class TestSignalRandShiftTorch(unittest.TestCase):
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@parameterized.expand(VALID_CASES)
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def test_correct_parameters_multi_channels(self, mode, filling, boundaries):
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self.assertIsInstance(SignalRandShift(mode, filling, boundaries), SignalRandShift)
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sig = convert_to_tensor(np.load(TEST_SIGNAL))
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shifted = SignalRandShift(mode, filling, boundaries)
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shiftedsignal = shifted(sig)
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self.assertEqual(shiftedsignal.shape[1], sig.shape[1])
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# you may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANy KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import os
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import unittest
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from pathlib import Path
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from unittest import skipUnless
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.transforms import SignalRemoveFrequency
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from monai.utils import optional_import
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from monai.utils.type_conversion import convert_to_tensor
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_, has_scipy = optional_import("scipy")
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_, has_torchaudio = optional_import("torchaudio")
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TESTS_PATH = Path(__file__).parents[1]
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TEST_SIGNAL = os.path.join(TESTS_PATH, "testing_data", "signal.npy")
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VALID_CASES = [(60, 1, 500)]
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@skipUnless(has_scipy and has_torchaudio, "scipy and torchaudio are required")
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class TestSignalRemoveFrequencyNumpy(unittest.TestCase):
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@parameterized.expand(VALID_CASES)
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def test_correct_parameters_multi_channels(self, frequency, quality_factor, sampling_freq):
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self.assertIsInstance(SignalRemoveFrequency(frequency, quality_factor, sampling_freq), SignalRemoveFrequency)
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sig = np.load(TEST_SIGNAL)
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t = sig.shape[1] / sampling_freq
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composite_sig = sig + np.sin(2 * np.pi * frequency * t)
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freqremove = SignalRemoveFrequency(frequency, quality_factor, sampling_freq)
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freqremovesignal = freqremove(composite_sig)
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y = np.fft.fft(composite_sig) / composite_sig.shape[1]
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y = y[: composite_sig.shape[1] // 2]
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y2 = np.fft.fft(freqremovesignal) / freqremovesignal.shape[1]
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y2 = y2[: freqremovesignal.shape[1] // 2]
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self.assertEqual(composite_sig.shape[1], sig.shape[1])
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self.assertAlmostEqual(y.all(), y2.all())
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@skipUnless(has_scipy and has_torchaudio, "scipy and torchaudio are required")
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class TestSignalRemoveFrequencyTorch(unittest.TestCase):
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@parameterized.expand(VALID_CASES)
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def test_correct_parameters_multi_channels(self, frequency, quality_factor, sampling_freq):
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self.assertIsInstance(SignalRemoveFrequency(frequency, quality_factor, sampling_freq), SignalRemoveFrequency)
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sig = convert_to_tensor(np.load(TEST_SIGNAL))
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t = sig.shape[1] / sampling_freq
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composite_sig = convert_to_tensor(sig + np.sin(2 * np.pi * frequency * t))
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freqremove = SignalRemoveFrequency(frequency, quality_factor, sampling_freq)
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freqremovesignal = freqremove(composite_sig)
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y = torch.fft.fft(composite_sig) / composite_sig.shape[1]
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y = y[: composite_sig.shape[1] // 2]
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y2 = torch.fft.fft(freqremovesignal) / freqremovesignal.shape[1]
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y2 = y2[: freqremovesignal.shape[1] // 2]
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self.assertEqual(composite_sig.shape[1], sig.shape[1])
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self.assertAlmostEqual(y.all(), y2.all())
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from itertools import product
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.networks.utils import meshgrid_xy
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from monai.transforms import RandSmoothDeformd, RandSmoothFieldAdjustContrastd, RandSmoothFieldAdjustIntensityd
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from tests.test_utils import TEST_NDARRAYS, assert_allclose, is_tf32_env
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_rtol = 5e-3 if is_tf32_env() else 1e-4
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x, y = meshgrid_xy(torch.linspace(-1, 2, 11), torch.linspace(-2.1, 1.2, 8))
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pattern2d = x.pow(2).add_(y.pow(2)).sqrt_()
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x, y, z = meshgrid_xy(torch.linspace(-1, 2, 11), torch.linspace(-2.1, 1.2, 8), torch.linspace(-0.1, 10.2, 6))
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pattern3d = x.pow(2).add_(y.pow(2)).add_(z.pow(2)).sqrt_()
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INPUT_SHAPES = ((1, 8, 8), (1, 12, 7), (2, 8, 8), (2, 13, 8), (1, 8, 8, 8), (3, 7, 4, 5))
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TESTS_CONTRAST = []
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TESTS_INTENSITY = []
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TESTS_DEFORM = []
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KEY = "test"
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for arr_type, shape in product(TEST_NDARRAYS, INPUT_SHAPES):
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in_arr = arr_type(np.ones(shape, np.float32))
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exp_arr = arr_type(np.ones(shape, np.float32))
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rand_size = (4,) * (len(shape) - 1)
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device = torch.device("cpu")
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if isinstance(in_arr, torch.Tensor) and in_arr.get_device() >= 0:
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device = torch.device(in_arr.get_device())
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TESTS_CONTRAST.append(
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(
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{"keys": (KEY,), "spatial_size": shape[1:], "rand_size": rand_size, "prob": 1.0, "device": device},
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{KEY: in_arr},
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{KEY: exp_arr},
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)
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)
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TESTS_INTENSITY.append(
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(
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{
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"keys": (KEY,),
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"spatial_size": shape[1:],
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"rand_size": rand_size,
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"prob": 1.0,
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"device": device,
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"gamma": (0.9, 1),
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},
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{KEY: in_arr},
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{KEY: exp_arr},
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)
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)
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TESTS_DEFORM.append(
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(
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{
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"keys": (KEY,),
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"spatial_size": shape[1:],
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"rand_size": rand_size,
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"prob": 1.0,
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"device": device,
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"def_range": 0.1,
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},
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{KEY: in_arr},
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{KEY: exp_arr},
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)
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)
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class TestSmoothField(unittest.TestCase):
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@parameterized.expand(TESTS_CONTRAST)
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def test_rand_smooth_field_adjust_contrastd(self, input_param, input_data, expected_val):
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g = RandSmoothFieldAdjustContrastd(**input_param)
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g.set_random_state(123)
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res = g(input_data)
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for key, result in res.items():
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expected = expected_val[key]
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assert_allclose(result, expected, rtol=_rtol, atol=1e-1, type_test="tensor")
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def test_rand_smooth_field_adjust_contrastd_pad(self):
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input_param, input_data, expected_val = TESTS_CONTRAST[0]
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g = RandSmoothFieldAdjustContrastd(pad=1, **input_param)
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g.set_random_state(123)
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res = g(input_data)
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for key, result in res.items():
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expected = expected_val[key]
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assert_allclose(result, expected, rtol=_rtol, atol=1e-1, type_test="tensor")
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@parameterized.expand(TESTS_INTENSITY)
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def test_rand_smooth_field_adjust_intensityd(self, input_param, input_data, expected_val):
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g = RandSmoothFieldAdjustIntensityd(**input_param)
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g.set_random_state(123)
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res = g(input_data)
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for key, result in res.items():
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expected = expected_val[key]
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assert_allclose(result, expected, rtol=_rtol, atol=1e-1, type_test="tensor")
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def test_rand_smooth_field_adjust_intensityd_pad(self):
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input_param, input_data, expected_val = TESTS_INTENSITY[0]
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g = RandSmoothFieldAdjustIntensityd(pad=1, **input_param)
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g.set_random_state(123)
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res = g(input_data)
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for key, result in res.items():
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expected = expected_val[key]
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assert_allclose(result, expected, rtol=_rtol, atol=1e-1, type_test="tensor")
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@parameterized.expand(TESTS_DEFORM)
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def test_rand_smooth_deformd(self, input_param, input_data, expected_val):
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g = RandSmoothDeformd(**input_param)
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g.set_random_state(123)
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res = g(input_data)
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for key, result in res.items():
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expected = expected_val[key]
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assert_allclose(result, expected, rtol=_rtol, atol=1e-1, type_test="tensor")
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def test_rand_smooth_nodeformd(self):
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"""Test input is very close to output when deformation is very low, verifies there's no transposition."""
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for label, im in zip(("2D", "3D"), (pattern2d, pattern3d)):
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with self.subTest(f"Testing {label} case with shape {im.shape}"):
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rsize = (3,) * len(im.shape)
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g = RandSmoothDeformd(
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keys=(KEY,), spatial_size=im.shape, rand_size=rsize, prob=1.0, device=device, def_range=1e-20
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)
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g.set_random_state(123)
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expected_val = {KEY: im[None]}
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res = g(expected_val)
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for key, result in res.items():
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expected = expected_val[key]
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self.assertSequenceEqual(tuple(result.shape), tuple(expected.shape))
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assert_allclose(result, expected, rtol=_rtol, atol=1e-1, type_test="tensor")
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def test_rand_smooth_deformd_pad(self):
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input_param, input_data, expected_val = TESTS_DEFORM[0]
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g = RandSmoothDeformd(pad=1, **input_param)
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g.set_random_state(123)
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res = g(input_data)
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for key, result in res.items():
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expected = expected_val[key]
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assert_allclose(result, expected, rtol=_rtol, atol=1e-1, type_test="tensor")
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if __name__ == "__main__":
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unittest.main()
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@@ -0,0 +1,189 @@
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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+
# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+
# See the License for the specific language governing permissions and
|
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+
# limitations under the License.
|
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+
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+
from __future__ import annotations
|
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+
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import unittest
|
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+
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+
import torch
|
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+
from parameterized import parameterized
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+
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from monai.transforms import SobelGradients
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from tests.test_utils import assert_allclose
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+
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IMAGE = torch.zeros(1, 16, 16, dtype=torch.float32)
|
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+
IMAGE[0, 8, :] = 1
|
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+
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+
# Output with reflect padding
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+
OUTPUT_3x3 = torch.zeros(2, 16, 16, dtype=torch.float32)
|
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+
OUTPUT_3x3[0, 7, :] = 0.5
|
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+
OUTPUT_3x3[0, 9, :] = -0.5
|
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+
|
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+
# Output with zero padding
|
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+
OUTPUT_3x3_ZERO_PAD = OUTPUT_3x3.clone()
|
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|
+
OUTPUT_3x3_ZERO_PAD[1, 7, 0] = OUTPUT_3x3_ZERO_PAD[1, 9, 0] = 0.125
|
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+
OUTPUT_3x3_ZERO_PAD[1, 8, 0] = 0.25
|
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OUTPUT_3x3_ZERO_PAD[1, 7, -1] = OUTPUT_3x3_ZERO_PAD[1, 9, -1] = -0.125
|
35
|
+
OUTPUT_3x3_ZERO_PAD[1, 8, -1] = -0.25
|
36
|
+
OUTPUT_3x3_ZERO_PAD[0, 7, 0] = OUTPUT_3x3_ZERO_PAD[0, 7, -1] = 3.0 / 8.0
|
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|
+
OUTPUT_3x3_ZERO_PAD[0, 9, 0] = OUTPUT_3x3_ZERO_PAD[0, 9, -1] = -3.0 / 8.0
|
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|
+
|
39
|
+
TEST_CASE_0 = [IMAGE, {"kernel_size": 3, "dtype": torch.float32}, OUTPUT_3x3]
|
40
|
+
TEST_CASE_1 = [IMAGE, {"kernel_size": 3, "dtype": torch.float64}, OUTPUT_3x3]
|
41
|
+
TEST_CASE_2 = [IMAGE, {"kernel_size": 3, "spatial_axes": 0, "dtype": torch.float64}, OUTPUT_3x3[0:1]]
|
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|
+
TEST_CASE_3 = [IMAGE, {"kernel_size": 3, "spatial_axes": 1, "dtype": torch.float64}, OUTPUT_3x3[1:2]]
|
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|
+
TEST_CASE_4 = [IMAGE, {"kernel_size": 3, "spatial_axes": [1], "dtype": torch.float64}, OUTPUT_3x3[1:2]]
|
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|
+
TEST_CASE_5 = [
|
45
|
+
IMAGE,
|
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|
+
{"kernel_size": 3, "spatial_axes": [0, 1], "normalize_kernels": True, "dtype": torch.float64},
|
47
|
+
OUTPUT_3x3,
|
48
|
+
]
|
49
|
+
TEST_CASE_6 = [
|
50
|
+
IMAGE,
|
51
|
+
{"kernel_size": 3, "spatial_axes": (0, 1), "padding_mode": "reflect", "dtype": torch.float64},
|
52
|
+
OUTPUT_3x3,
|
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|
+
]
|
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|
+
TEST_CASE_7 = [
|
55
|
+
IMAGE,
|
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|
+
{"kernel_size": 3, "spatial_axes": (0, 1), "padding_mode": "zeros", "dtype": torch.float64},
|
57
|
+
OUTPUT_3x3_ZERO_PAD,
|
58
|
+
]
|
59
|
+
TEST_CASE_8 = [ # Non-normalized kernels
|
60
|
+
IMAGE,
|
61
|
+
{"kernel_size": 3, "normalize_kernels": False, "dtype": torch.float32},
|
62
|
+
OUTPUT_3x3 * 8.0,
|
63
|
+
]
|
64
|
+
TEST_CASE_9 = [ # Normalized gradients and normalized kernels
|
65
|
+
IMAGE,
|
66
|
+
{
|
67
|
+
"kernel_size": 3,
|
68
|
+
"normalize_kernels": True,
|
69
|
+
"normalize_gradients": True,
|
70
|
+
"spatial_axes": (0, 1),
|
71
|
+
"dtype": torch.float64,
|
72
|
+
},
|
73
|
+
torch.cat([OUTPUT_3x3[0:1] + 0.5, OUTPUT_3x3[1:2]]),
|
74
|
+
]
|
75
|
+
TEST_CASE_10 = [ # Normalized gradients but non-normalized kernels
|
76
|
+
IMAGE,
|
77
|
+
{
|
78
|
+
"kernel_size": 3,
|
79
|
+
"normalize_kernels": False,
|
80
|
+
"normalize_gradients": True,
|
81
|
+
"spatial_axes": (0, 1),
|
82
|
+
"dtype": torch.float64,
|
83
|
+
},
|
84
|
+
torch.cat([OUTPUT_3x3[0:1] + 0.5, OUTPUT_3x3[1:2]]),
|
85
|
+
]
|
86
|
+
|
87
|
+
TEST_CASE_KERNEL_0 = [
|
88
|
+
{"kernel_size": 3, "dtype": torch.float64},
|
89
|
+
(torch.tensor([-0.5, 0.0, 0.5], dtype=torch.float64), torch.tensor([0.25, 0.5, 0.25], dtype=torch.float64)),
|
90
|
+
]
|
91
|
+
TEST_CASE_KERNEL_1 = [
|
92
|
+
{"kernel_size": 5, "dtype": torch.float64},
|
93
|
+
(
|
94
|
+
torch.tensor([-0.1250, -0.2500, 0.0000, 0.2500, 0.1250], dtype=torch.float64),
|
95
|
+
torch.tensor([0.0625, 0.2500, 0.3750, 0.2500, 0.0625], dtype=torch.float64),
|
96
|
+
),
|
97
|
+
]
|
98
|
+
TEST_CASE_KERNEL_2 = [
|
99
|
+
{"kernel_size": 7, "dtype": torch.float64},
|
100
|
+
(
|
101
|
+
torch.tensor([-0.03125, -0.125, -0.15625, 0.0, 0.15625, 0.125, 0.03125], dtype=torch.float64),
|
102
|
+
torch.tensor([0.015625, 0.09375, 0.234375, 0.3125, 0.234375, 0.09375, 0.015625], dtype=torch.float64),
|
103
|
+
),
|
104
|
+
]
|
105
|
+
TEST_CASE_KERNEL_NON_NORMALIZED_0 = [
|
106
|
+
{"kernel_size": 3, "normalize_kernels": False, "dtype": torch.float64},
|
107
|
+
(torch.tensor([-1.0, 0.0, 1.0], dtype=torch.float64), torch.tensor([1.0, 2.0, 1.0], dtype=torch.float64)),
|
108
|
+
]
|
109
|
+
TEST_CASE_KERNEL_NON_NORMALIZED_1 = [
|
110
|
+
{"kernel_size": 5, "normalize_kernels": False, "dtype": torch.float64},
|
111
|
+
(
|
112
|
+
torch.tensor([-1.0, -2.0, 0.0, 2.0, 1.0], dtype=torch.float64),
|
113
|
+
torch.tensor([1.0, 4.0, 6.0, 4.0, 1.0], dtype=torch.float64),
|
114
|
+
),
|
115
|
+
]
|
116
|
+
TEST_CASE_KERNEL_NON_NORMALIZED_2 = [
|
117
|
+
{"kernel_size": 7, "normalize_kernels": False, "dtype": torch.float64},
|
118
|
+
(
|
119
|
+
torch.tensor([-1.0, -4.0, -5.0, 0.0, 5.0, 4.0, 1.0], dtype=torch.float64),
|
120
|
+
torch.tensor([1.0, 6.0, 15.0, 20.0, 15.0, 6.0, 1.0], dtype=torch.float64),
|
121
|
+
),
|
122
|
+
]
|
123
|
+
|
124
|
+
TEST_CASE_ERROR_0 = [IMAGE, {"kernel_size": 1}] # kernel size less than 3
|
125
|
+
TEST_CASE_ERROR_1 = [IMAGE, {"kernel_size": 4}] # even kernel size
|
126
|
+
TEST_CASE_ERROR_2 = [IMAGE, {"spatial_axes": "horizontal"}] # wrong type direction
|
127
|
+
TEST_CASE_ERROR_3 = [IMAGE, {"spatial_axes": 3}] # wrong direction
|
128
|
+
TEST_CASE_ERROR_4 = [IMAGE, {"spatial_axes": [3]}] # wrong direction in a list
|
129
|
+
TEST_CASE_ERROR_5 = [IMAGE, {"spatial_axes": [0, 4]}] # correct and wrong direction in a list
|
130
|
+
|
131
|
+
|
132
|
+
class SobelGradientTests(unittest.TestCase):
|
133
|
+
backend = None
|
134
|
+
|
135
|
+
@parameterized.expand(
|
136
|
+
[
|
137
|
+
TEST_CASE_0,
|
138
|
+
TEST_CASE_1,
|
139
|
+
TEST_CASE_2,
|
140
|
+
TEST_CASE_3,
|
141
|
+
TEST_CASE_4,
|
142
|
+
TEST_CASE_5,
|
143
|
+
TEST_CASE_6,
|
144
|
+
TEST_CASE_7,
|
145
|
+
TEST_CASE_8,
|
146
|
+
TEST_CASE_9,
|
147
|
+
TEST_CASE_10,
|
148
|
+
]
|
149
|
+
)
|
150
|
+
def test_sobel_gradients(self, image, arguments, expected_grad):
|
151
|
+
sobel = SobelGradients(**arguments)
|
152
|
+
grad = sobel(image)
|
153
|
+
assert_allclose(grad, expected_grad)
|
154
|
+
|
155
|
+
@parameterized.expand(
|
156
|
+
[
|
157
|
+
TEST_CASE_KERNEL_0,
|
158
|
+
TEST_CASE_KERNEL_1,
|
159
|
+
TEST_CASE_KERNEL_2,
|
160
|
+
TEST_CASE_KERNEL_NON_NORMALIZED_0,
|
161
|
+
TEST_CASE_KERNEL_NON_NORMALIZED_1,
|
162
|
+
TEST_CASE_KERNEL_NON_NORMALIZED_2,
|
163
|
+
]
|
164
|
+
)
|
165
|
+
def test_sobel_kernels(self, arguments, expected_kernels):
|
166
|
+
sobel = SobelGradients(**arguments)
|
167
|
+
self.assertEqual(sobel.kernel_diff.dtype, expected_kernels[0].dtype)
|
168
|
+
self.assertEqual(sobel.kernel_smooth.dtype, expected_kernels[0].dtype)
|
169
|
+
assert_allclose(sobel.kernel_diff, expected_kernels[0])
|
170
|
+
assert_allclose(sobel.kernel_smooth, expected_kernels[1])
|
171
|
+
|
172
|
+
@parameterized.expand(
|
173
|
+
[
|
174
|
+
TEST_CASE_ERROR_0,
|
175
|
+
TEST_CASE_ERROR_1,
|
176
|
+
TEST_CASE_ERROR_2,
|
177
|
+
TEST_CASE_ERROR_3,
|
178
|
+
TEST_CASE_ERROR_4,
|
179
|
+
TEST_CASE_ERROR_5,
|
180
|
+
]
|
181
|
+
)
|
182
|
+
def test_sobel_gradients_error(self, image, arguments):
|
183
|
+
with self.assertRaises(ValueError):
|
184
|
+
sobel = SobelGradients(**arguments)
|
185
|
+
sobel(image)
|
186
|
+
|
187
|
+
|
188
|
+
if __name__ == "__main__":
|
189
|
+
unittest.main()
|