monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl

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Files changed (776) hide show
  1. monai/__init__.py +1 -1
  2. monai/_version.py +3 -3
  3. monai/apps/auto3dseg/transforms.py +1 -4
  4. monai/data/utils.py +6 -13
  5. monai/inferers/utils.py +1 -2
  6. monai/losses/dice.py +2 -14
  7. monai/losses/ds_loss.py +1 -3
  8. monai/networks/layers/simplelayers.py +2 -14
  9. monai/networks/utils.py +4 -16
  10. monai/transforms/compose.py +28 -11
  11. monai/transforms/croppad/array.py +1 -6
  12. monai/transforms/io/array.py +0 -1
  13. monai/transforms/transform.py +15 -6
  14. monai/transforms/utils.py +1 -2
  15. monai/utils/tf32.py +0 -10
  16. monai/visualize/class_activation_maps.py +5 -8
  17. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
  18. monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
  19. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
  20. tests/apps/__init__.py +10 -0
  21. tests/apps/deepedit/__init__.py +10 -0
  22. tests/apps/deepedit/test_deepedit_transforms.py +314 -0
  23. tests/apps/deepgrow/__init__.py +10 -0
  24. tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
  25. tests/apps/deepgrow/transforms/__init__.py +10 -0
  26. tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
  27. tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
  28. tests/apps/detection/__init__.py +10 -0
  29. tests/apps/detection/metrics/__init__.py +10 -0
  30. tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
  31. tests/apps/detection/networks/__init__.py +10 -0
  32. tests/apps/detection/networks/test_retinanet.py +210 -0
  33. tests/apps/detection/networks/test_retinanet_detector.py +203 -0
  34. tests/apps/detection/test_box_transform.py +370 -0
  35. tests/apps/detection/utils/__init__.py +10 -0
  36. tests/apps/detection/utils/test_anchor_box.py +88 -0
  37. tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
  38. tests/apps/detection/utils/test_box_coder.py +43 -0
  39. tests/apps/detection/utils/test_detector_boxselector.py +67 -0
  40. tests/apps/detection/utils/test_detector_utils.py +96 -0
  41. tests/apps/detection/utils/test_hardnegsampler.py +54 -0
  42. tests/apps/nuclick/__init__.py +10 -0
  43. tests/apps/nuclick/test_nuclick_transforms.py +259 -0
  44. tests/apps/pathology/__init__.py +10 -0
  45. tests/apps/pathology/handlers/__init__.py +10 -0
  46. tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
  47. tests/apps/pathology/test_lesion_froc.py +333 -0
  48. tests/apps/pathology/test_pathology_prob_nms.py +55 -0
  49. tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
  50. tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
  51. tests/apps/pathology/transforms/__init__.py +10 -0
  52. tests/apps/pathology/transforms/post/__init__.py +10 -0
  53. tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
  54. tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
  55. tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
  56. tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
  57. tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
  58. tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
  59. tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
  60. tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
  61. tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
  62. tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
  63. tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
  64. tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
  65. tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
  66. tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
  67. tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
  68. tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
  69. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
  70. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
  71. tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
  72. tests/apps/pathology/transforms/post/test_watershed.py +60 -0
  73. tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
  74. tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
  75. tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
  76. tests/apps/reconstruction/__init__.py +10 -0
  77. tests/apps/reconstruction/nets/__init__.py +10 -0
  78. tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
  79. tests/apps/reconstruction/test_complex_utils.py +77 -0
  80. tests/apps/reconstruction/test_fastmri_reader.py +82 -0
  81. tests/apps/reconstruction/test_mri_utils.py +37 -0
  82. tests/apps/reconstruction/transforms/__init__.py +10 -0
  83. tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
  84. tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
  85. tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
  86. tests/apps/test_auto3dseg_bundlegen.py +156 -0
  87. tests/apps/test_check_hash.py +53 -0
  88. tests/apps/test_cross_validation.py +74 -0
  89. tests/apps/test_decathlondataset.py +93 -0
  90. tests/apps/test_download_and_extract.py +70 -0
  91. tests/apps/test_download_url_yandex.py +45 -0
  92. tests/apps/test_mednistdataset.py +72 -0
  93. tests/apps/test_mmar_download.py +154 -0
  94. tests/apps/test_tciadataset.py +123 -0
  95. tests/apps/vista3d/__init__.py +10 -0
  96. tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
  97. tests/apps/vista3d/test_vista3d_sampler.py +100 -0
  98. tests/apps/vista3d/test_vista3d_transforms.py +94 -0
  99. tests/bundle/__init__.py +10 -0
  100. tests/bundle/test_bundle_ckpt_export.py +107 -0
  101. tests/bundle/test_bundle_download.py +435 -0
  102. tests/bundle/test_bundle_get_data.py +94 -0
  103. tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
  104. tests/bundle/test_bundle_trt_export.py +147 -0
  105. tests/bundle/test_bundle_utils.py +149 -0
  106. tests/bundle/test_bundle_verify_metadata.py +66 -0
  107. tests/bundle/test_bundle_verify_net.py +76 -0
  108. tests/bundle/test_bundle_workflow.py +272 -0
  109. tests/bundle/test_component_locator.py +38 -0
  110. tests/bundle/test_config_item.py +138 -0
  111. tests/bundle/test_config_parser.py +392 -0
  112. tests/bundle/test_reference_resolver.py +114 -0
  113. tests/config/__init__.py +10 -0
  114. tests/config/test_cv2_dist.py +53 -0
  115. tests/engines/__init__.py +10 -0
  116. tests/engines/test_ensemble_evaluator.py +94 -0
  117. tests/engines/test_prepare_batch_default.py +76 -0
  118. tests/engines/test_prepare_batch_default_dist.py +76 -0
  119. tests/engines/test_prepare_batch_diffusion.py +104 -0
  120. tests/engines/test_prepare_batch_extra_input.py +80 -0
  121. tests/fl/__init__.py +10 -0
  122. tests/fl/monai_algo/__init__.py +10 -0
  123. tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
  124. tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
  125. tests/fl/test_fl_monai_algo_stats.py +81 -0
  126. tests/fl/utils/__init__.py +10 -0
  127. tests/fl/utils/test_fl_exchange_object.py +63 -0
  128. tests/handlers/__init__.py +10 -0
  129. tests/handlers/test_handler_checkpoint_loader.py +182 -0
  130. tests/handlers/test_handler_checkpoint_saver.py +233 -0
  131. tests/handlers/test_handler_classification_saver.py +64 -0
  132. tests/handlers/test_handler_classification_saver_dist.py +77 -0
  133. tests/handlers/test_handler_clearml_image.py +65 -0
  134. tests/handlers/test_handler_clearml_stats.py +65 -0
  135. tests/handlers/test_handler_confusion_matrix.py +104 -0
  136. tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
  137. tests/handlers/test_handler_decollate_batch.py +66 -0
  138. tests/handlers/test_handler_early_stop.py +68 -0
  139. tests/handlers/test_handler_garbage_collector.py +73 -0
  140. tests/handlers/test_handler_hausdorff_distance.py +111 -0
  141. tests/handlers/test_handler_ignite_metric.py +191 -0
  142. tests/handlers/test_handler_lr_scheduler.py +94 -0
  143. tests/handlers/test_handler_mean_dice.py +98 -0
  144. tests/handlers/test_handler_mean_iou.py +76 -0
  145. tests/handlers/test_handler_metrics_reloaded.py +149 -0
  146. tests/handlers/test_handler_metrics_saver.py +89 -0
  147. tests/handlers/test_handler_metrics_saver_dist.py +120 -0
  148. tests/handlers/test_handler_mlflow.py +296 -0
  149. tests/handlers/test_handler_nvtx.py +93 -0
  150. tests/handlers/test_handler_panoptic_quality.py +89 -0
  151. tests/handlers/test_handler_parameter_scheduler.py +136 -0
  152. tests/handlers/test_handler_post_processing.py +74 -0
  153. tests/handlers/test_handler_prob_map_producer.py +111 -0
  154. tests/handlers/test_handler_regression_metrics.py +160 -0
  155. tests/handlers/test_handler_regression_metrics_dist.py +245 -0
  156. tests/handlers/test_handler_rocauc.py +48 -0
  157. tests/handlers/test_handler_rocauc_dist.py +54 -0
  158. tests/handlers/test_handler_stats.py +281 -0
  159. tests/handlers/test_handler_surface_distance.py +113 -0
  160. tests/handlers/test_handler_tb_image.py +61 -0
  161. tests/handlers/test_handler_tb_stats.py +166 -0
  162. tests/handlers/test_handler_validation.py +59 -0
  163. tests/handlers/test_trt_compile.py +145 -0
  164. tests/handlers/test_write_metrics_reports.py +68 -0
  165. tests/inferers/__init__.py +10 -0
  166. tests/inferers/test_avg_merger.py +179 -0
  167. tests/inferers/test_controlnet_inferers.py +1310 -0
  168. tests/inferers/test_diffusion_inferer.py +236 -0
  169. tests/inferers/test_latent_diffusion_inferer.py +824 -0
  170. tests/inferers/test_patch_inferer.py +309 -0
  171. tests/inferers/test_saliency_inferer.py +55 -0
  172. tests/inferers/test_slice_inferer.py +57 -0
  173. tests/inferers/test_sliding_window_inference.py +377 -0
  174. tests/inferers/test_sliding_window_splitter.py +284 -0
  175. tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
  176. tests/inferers/test_zarr_avg_merger.py +326 -0
  177. tests/integration/__init__.py +10 -0
  178. tests/integration/test_auto3dseg_ensemble.py +211 -0
  179. tests/integration/test_auto3dseg_hpo.py +189 -0
  180. tests/integration/test_deepedit_interaction.py +122 -0
  181. tests/integration/test_downsample_block.py +50 -0
  182. tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
  183. tests/integration/test_integration_autorunner.py +201 -0
  184. tests/integration/test_integration_bundle_run.py +240 -0
  185. tests/integration/test_integration_classification_2d.py +282 -0
  186. tests/integration/test_integration_determinism.py +95 -0
  187. tests/integration/test_integration_fast_train.py +231 -0
  188. tests/integration/test_integration_gpu_customization.py +159 -0
  189. tests/integration/test_integration_lazy_samples.py +219 -0
  190. tests/integration/test_integration_nnunetv2_runner.py +96 -0
  191. tests/integration/test_integration_segmentation_3d.py +304 -0
  192. tests/integration/test_integration_sliding_window.py +100 -0
  193. tests/integration/test_integration_stn.py +133 -0
  194. tests/integration/test_integration_unet_2d.py +67 -0
  195. tests/integration/test_integration_workers.py +61 -0
  196. tests/integration/test_integration_workflows.py +365 -0
  197. tests/integration/test_integration_workflows_adversarial.py +173 -0
  198. tests/integration/test_integration_workflows_gan.py +158 -0
  199. tests/integration/test_loader_semaphore.py +48 -0
  200. tests/integration/test_mapping_filed.py +122 -0
  201. tests/integration/test_meta_affine.py +183 -0
  202. tests/integration/test_metatensor_integration.py +114 -0
  203. tests/integration/test_module_list.py +76 -0
  204. tests/integration/test_one_of.py +283 -0
  205. tests/integration/test_pad_collation.py +124 -0
  206. tests/integration/test_reg_loss_integration.py +107 -0
  207. tests/integration/test_retinanet_predict_utils.py +154 -0
  208. tests/integration/test_seg_loss_integration.py +159 -0
  209. tests/integration/test_spatial_combine_transforms.py +185 -0
  210. tests/integration/test_testtimeaugmentation.py +186 -0
  211. tests/integration/test_vis_gradbased.py +69 -0
  212. tests/integration/test_vista3d_utils.py +159 -0
  213. tests/losses/__init__.py +10 -0
  214. tests/losses/deform/__init__.py +10 -0
  215. tests/losses/deform/test_bending_energy.py +88 -0
  216. tests/losses/deform/test_diffusion_loss.py +117 -0
  217. tests/losses/image_dissimilarity/__init__.py +10 -0
  218. tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
  219. tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
  220. tests/losses/test_adversarial_loss.py +94 -0
  221. tests/losses/test_barlow_twins_loss.py +109 -0
  222. tests/losses/test_cldice_loss.py +51 -0
  223. tests/losses/test_contrastive_loss.py +86 -0
  224. tests/losses/test_dice_ce_loss.py +123 -0
  225. tests/losses/test_dice_focal_loss.py +124 -0
  226. tests/losses/test_dice_loss.py +227 -0
  227. tests/losses/test_ds_loss.py +189 -0
  228. tests/losses/test_focal_loss.py +379 -0
  229. tests/losses/test_generalized_dice_focal_loss.py +85 -0
  230. tests/losses/test_generalized_dice_loss.py +221 -0
  231. tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
  232. tests/losses/test_giou_loss.py +62 -0
  233. tests/losses/test_hausdorff_loss.py +264 -0
  234. tests/losses/test_masked_dice_loss.py +152 -0
  235. tests/losses/test_masked_loss.py +87 -0
  236. tests/losses/test_multi_scale.py +86 -0
  237. tests/losses/test_nacl_loss.py +167 -0
  238. tests/losses/test_perceptual_loss.py +122 -0
  239. tests/losses/test_spectral_loss.py +86 -0
  240. tests/losses/test_ssim_loss.py +59 -0
  241. tests/losses/test_sure_loss.py +72 -0
  242. tests/losses/test_tversky_loss.py +198 -0
  243. tests/losses/test_unified_focal_loss.py +66 -0
  244. tests/metrics/__init__.py +10 -0
  245. tests/metrics/test_compute_confusion_matrix.py +294 -0
  246. tests/metrics/test_compute_f_beta.py +80 -0
  247. tests/metrics/test_compute_fid_metric.py +40 -0
  248. tests/metrics/test_compute_froc.py +143 -0
  249. tests/metrics/test_compute_generalized_dice.py +240 -0
  250. tests/metrics/test_compute_meandice.py +306 -0
  251. tests/metrics/test_compute_meaniou.py +223 -0
  252. tests/metrics/test_compute_mmd_metric.py +56 -0
  253. tests/metrics/test_compute_multiscalessim_metric.py +83 -0
  254. tests/metrics/test_compute_panoptic_quality.py +113 -0
  255. tests/metrics/test_compute_regression_metrics.py +196 -0
  256. tests/metrics/test_compute_roc_auc.py +155 -0
  257. tests/metrics/test_compute_variance.py +147 -0
  258. tests/metrics/test_cumulative.py +63 -0
  259. tests/metrics/test_cumulative_average.py +74 -0
  260. tests/metrics/test_cumulative_average_dist.py +48 -0
  261. tests/metrics/test_hausdorff_distance.py +209 -0
  262. tests/metrics/test_label_quality_score.py +134 -0
  263. tests/metrics/test_loss_metric.py +57 -0
  264. tests/metrics/test_metrics_reloaded.py +96 -0
  265. tests/metrics/test_ssim_metric.py +78 -0
  266. tests/metrics/test_surface_dice.py +416 -0
  267. tests/metrics/test_surface_distance.py +186 -0
  268. tests/networks/__init__.py +10 -0
  269. tests/networks/blocks/__init__.py +10 -0
  270. tests/networks/blocks/dints_block/__init__.py +10 -0
  271. tests/networks/blocks/dints_block/test_acn_block.py +41 -0
  272. tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
  273. tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
  274. tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
  275. tests/networks/blocks/test_adn.py +86 -0
  276. tests/networks/blocks/test_convolutions.py +156 -0
  277. tests/networks/blocks/test_crf_cpu.py +513 -0
  278. tests/networks/blocks/test_crf_cuda.py +528 -0
  279. tests/networks/blocks/test_crossattention.py +185 -0
  280. tests/networks/blocks/test_denseblock.py +105 -0
  281. tests/networks/blocks/test_dynunet_block.py +116 -0
  282. tests/networks/blocks/test_fpn_block.py +88 -0
  283. tests/networks/blocks/test_localnet_block.py +121 -0
  284. tests/networks/blocks/test_mlp.py +78 -0
  285. tests/networks/blocks/test_patchembedding.py +212 -0
  286. tests/networks/blocks/test_regunet_block.py +103 -0
  287. tests/networks/blocks/test_se_block.py +85 -0
  288. tests/networks/blocks/test_se_blocks.py +78 -0
  289. tests/networks/blocks/test_segresnet_block.py +57 -0
  290. tests/networks/blocks/test_selfattention.py +232 -0
  291. tests/networks/blocks/test_simple_aspp.py +87 -0
  292. tests/networks/blocks/test_spatialattention.py +55 -0
  293. tests/networks/blocks/test_subpixel_upsample.py +87 -0
  294. tests/networks/blocks/test_text_encoding.py +49 -0
  295. tests/networks/blocks/test_transformerblock.py +90 -0
  296. tests/networks/blocks/test_unetr_block.py +158 -0
  297. tests/networks/blocks/test_upsample_block.py +134 -0
  298. tests/networks/blocks/warp/__init__.py +10 -0
  299. tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
  300. tests/networks/blocks/warp/test_warp.py +250 -0
  301. tests/networks/layers/__init__.py +10 -0
  302. tests/networks/layers/filtering/__init__.py +10 -0
  303. tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
  304. tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
  305. tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
  306. tests/networks/layers/filtering/test_phl_cpu.py +259 -0
  307. tests/networks/layers/filtering/test_phl_cuda.py +167 -0
  308. tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
  309. tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
  310. tests/networks/layers/test_affine_transform.py +385 -0
  311. tests/networks/layers/test_apply_filter.py +89 -0
  312. tests/networks/layers/test_channel_pad.py +51 -0
  313. tests/networks/layers/test_conjugate_gradient.py +56 -0
  314. tests/networks/layers/test_drop_path.py +46 -0
  315. tests/networks/layers/test_gaussian.py +317 -0
  316. tests/networks/layers/test_gaussian_filter.py +206 -0
  317. tests/networks/layers/test_get_layers.py +65 -0
  318. tests/networks/layers/test_gmm.py +314 -0
  319. tests/networks/layers/test_grid_pull.py +93 -0
  320. tests/networks/layers/test_hilbert_transform.py +131 -0
  321. tests/networks/layers/test_lltm.py +62 -0
  322. tests/networks/layers/test_median_filter.py +52 -0
  323. tests/networks/layers/test_polyval.py +55 -0
  324. tests/networks/layers/test_preset_filters.py +136 -0
  325. tests/networks/layers/test_savitzky_golay_filter.py +141 -0
  326. tests/networks/layers/test_separable_filter.py +87 -0
  327. tests/networks/layers/test_skip_connection.py +48 -0
  328. tests/networks/layers/test_vector_quantizer.py +89 -0
  329. tests/networks/layers/test_weight_init.py +50 -0
  330. tests/networks/nets/__init__.py +10 -0
  331. tests/networks/nets/dints/__init__.py +10 -0
  332. tests/networks/nets/dints/test_dints_cell.py +110 -0
  333. tests/networks/nets/dints/test_dints_mixop.py +84 -0
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  681. tests/transforms/test_std_shift_intensityd.py +74 -0
  682. tests/transforms/test_threshold_intensity.py +38 -0
  683. tests/transforms/test_threshold_intensityd.py +58 -0
  684. tests/transforms/test_to_contiguous.py +47 -0
  685. tests/transforms/test_to_cupy.py +112 -0
  686. tests/transforms/test_to_cupyd.py +76 -0
  687. tests/transforms/test_to_device.py +42 -0
  688. tests/transforms/test_to_deviced.py +37 -0
  689. tests/transforms/test_to_numpy.py +85 -0
  690. tests/transforms/test_to_numpyd.py +68 -0
  691. tests/transforms/test_to_pil.py +52 -0
  692. tests/transforms/test_to_pild.py +50 -0
  693. tests/transforms/test_to_tensor.py +60 -0
  694. tests/transforms/test_to_tensord.py +71 -0
  695. tests/transforms/test_torchvision.py +66 -0
  696. tests/transforms/test_torchvisiond.py +63 -0
  697. tests/transforms/test_transform.py +62 -0
  698. tests/transforms/test_transpose.py +41 -0
  699. tests/transforms/test_transposed.py +52 -0
  700. tests/transforms/test_ultrasound_confidence_map_transform.py +711 -0
  701. tests/transforms/test_utils_pytorch_numpy_unification.py +90 -0
  702. tests/transforms/test_vote_ensemble.py +84 -0
  703. tests/transforms/test_vote_ensembled.py +107 -0
  704. tests/transforms/test_with_allow_missing_keys.py +76 -0
  705. tests/transforms/test_zoom.py +120 -0
  706. tests/transforms/test_zoomd.py +94 -0
  707. tests/transforms/transform/__init__.py +10 -0
  708. tests/transforms/transform/test_randomizable.py +52 -0
  709. tests/transforms/transform/test_randomizable_transform_type.py +37 -0
  710. tests/transforms/utility/__init__.py +10 -0
  711. tests/transforms/utility/test_apply_transform_to_points.py +81 -0
  712. tests/transforms/utility/test_apply_transform_to_pointsd.py +185 -0
  713. tests/transforms/utility/test_identity.py +29 -0
  714. tests/transforms/utility/test_identityd.py +30 -0
  715. tests/transforms/utility/test_lambda.py +71 -0
  716. tests/transforms/utility/test_lambdad.py +83 -0
  717. tests/transforms/utility/test_rand_lambda.py +87 -0
  718. tests/transforms/utility/test_rand_lambdad.py +77 -0
  719. tests/transforms/utility/test_simulatedelay.py +36 -0
  720. tests/transforms/utility/test_simulatedelayd.py +36 -0
  721. tests/transforms/utility/test_splitdim.py +52 -0
  722. tests/transforms/utility/test_splitdimd.py +96 -0
  723. tests/transforms/utils/__init__.py +10 -0
  724. tests/transforms/utils/test_correct_crop_centers.py +36 -0
  725. tests/transforms/utils/test_get_unique_labels.py +45 -0
  726. tests/transforms/utils/test_print_transform_backends.py +29 -0
  727. tests/transforms/utils/test_soft_clip.py +125 -0
  728. tests/utils/__init__.py +10 -0
  729. tests/utils/enums/__init__.py +10 -0
  730. tests/utils/enums/test_hovernet_loss.py +190 -0
  731. tests/utils/enums/test_ordering.py +289 -0
  732. tests/utils/enums/test_wsireader.py +663 -0
  733. tests/utils/misc/__init__.py +10 -0
  734. tests/utils/misc/test_ensure_tuple.py +53 -0
  735. tests/utils/misc/test_monai_env_vars.py +44 -0
  736. tests/utils/misc/test_monai_utils_misc.py +103 -0
  737. tests/utils/misc/test_str2bool.py +34 -0
  738. tests/utils/misc/test_str2list.py +33 -0
  739. tests/utils/test_alias.py +44 -0
  740. tests/utils/test_component_store.py +73 -0
  741. tests/utils/test_deprecated.py +455 -0
  742. tests/utils/test_enum_bound_interp.py +75 -0
  743. tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
  744. tests/utils/test_get_package_version.py +34 -0
  745. tests/utils/test_handler_logfile.py +84 -0
  746. tests/utils/test_handler_metric_logger.py +62 -0
  747. tests/utils/test_list_to_dict.py +43 -0
  748. tests/utils/test_look_up_option.py +87 -0
  749. tests/utils/test_optional_import.py +80 -0
  750. tests/utils/test_pad_mode.py +39 -0
  751. tests/utils/test_profiling.py +208 -0
  752. tests/utils/test_rankfilter_dist.py +77 -0
  753. tests/utils/test_require_pkg.py +83 -0
  754. tests/utils/test_sample_slices.py +43 -0
  755. tests/utils/test_set_determinism.py +74 -0
  756. tests/utils/test_squeeze_unsqueeze.py +71 -0
  757. tests/utils/test_state_cacher.py +67 -0
  758. tests/utils/test_torchscript_utils.py +113 -0
  759. tests/utils/test_version.py +91 -0
  760. tests/utils/test_version_after.py +65 -0
  761. tests/utils/type_conversion/__init__.py +10 -0
  762. tests/utils/type_conversion/test_convert_data_type.py +152 -0
  763. tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
  764. tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
  765. tests/visualize/__init__.py +10 -0
  766. tests/visualize/test_img2tensorboard.py +46 -0
  767. tests/visualize/test_occlusion_sensitivity.py +128 -0
  768. tests/visualize/test_plot_2d_or_3d_image.py +74 -0
  769. tests/visualize/test_vis_cam.py +98 -0
  770. tests/visualize/test_vis_gradcam.py +211 -0
  771. tests/visualize/utils/__init__.py +10 -0
  772. tests/visualize/utils/test_blend_images.py +63 -0
  773. tests/visualize/utils/test_matshow3d.py +133 -0
  774. monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
  775. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
  776. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
tests/networks/blocks/test_crf_cpu.py ADDED
@@ -0,0 +1,513 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ import torch
18
+ from parameterized import parameterized
19
+
20
+ from monai.networks.blocks import CRF
21
+ from tests.test_utils import skip_if_no_cpp_extension
22
+
23
+ TEST_CASES = [
24
+ [
25
+ # Case Description
26
+ "2 batche(s), 1 dimension(s), 2 classe(s), 1 channel(s)",
27
+ # Parameters
28
+ [
29
+ 5, # iterations
30
+ 1.0, # bilateral_weight
31
+ 0.3, # gaussian_weight
32
+ 5.0, # bilateral_spatial_sigma
33
+ 0.5, # bilateral_color_sigma
34
+ 5.0, # gaussian_spatial_sigma
35
+ 1.0, # update_factor
36
+ None, # compatibility_matrix
37
+ ],
38
+ # Input
39
+ [
40
+ # Batch 0
41
+ [
42
+ # Class 0
43
+ [0.8, 0.9, 0.6, 0.2, 0.3],
44
+ # Class 1
45
+ [0.1, 0.3, 0.5, 0.8, 0.7],
46
+ ],
47
+ # Batch 1
48
+ [
49
+ # Class 0
50
+ [0.8, 0.9, 0.6, 0.2, 0.3],
51
+ # Class 1
52
+ [0.1, 0.3, 0.5, 0.8, 0.7],
53
+ ],
54
+ ],
55
+ # Features
56
+ [
57
+ # Batch 0
58
+ [
59
+ # Channel 0
60
+ [1, 1, 1, 0.5, 0]
61
+ ],
62
+ # Batch 1
63
+ [
64
+ # Channel 0
65
+ [1, 1, 0.5, 0, 0]
66
+ ],
67
+ ],
68
+ # Expected
69
+ [
70
+ # Batch 0
71
+ [
72
+ # Class 0
73
+ [0.726896, 0.704883, 0.589467, 0.376669, 0.380321],
74
+ # Class 1
75
+ [0.273104, 0.295117, 0.410533, 0.623331, 0.619679],
76
+ ],
77
+ # Batch 1
78
+ [
79
+ # Class 0
80
+ [0.741916, 0.720671, 0.551116, 0.328360, 0.376258],
81
+ # Class 1
82
+ [0.258084, 0.279329, 0.448885, 0.671640, 0.623742],
83
+ ],
84
+ ],
85
+ ],
86
+ [
87
+ # Case Description
88
+ "2 batche(s), 1 dimension(s), 2 classe(s), 1 channel(s), with_matrix",
89
+ # Parameters
90
+ [
91
+ 5, # iterations
92
+ 1.0, # bilateral_weight
93
+ 0.3, # gaussian_weight
94
+ 5.0, # bilateral_spatial_sigma
95
+ 0.5, # bilateral_color_sigma
96
+ 5.0, # gaussian_spatial_sigma
97
+ 1.0, # update_factor
98
+ 2 * torch.eye(2), # compatibility_matrix
99
+ ],
100
+ # Input
101
+ [
102
+ # Batch 0
103
+ [
104
+ # Class 0
105
+ [0.8, 0.9, 0.6, 0.2, 0.3],
106
+ # Class 1
107
+ [0.1, 0.3, 0.5, 0.8, 0.7],
108
+ ],
109
+ # Batch 1
110
+ [
111
+ # Class 0
112
+ [0.8, 0.9, 0.6, 0.2, 0.3],
113
+ # Class 1
114
+ [0.1, 0.3, 0.5, 0.8, 0.7],
115
+ ],
116
+ ],
117
+ # Features
118
+ [
119
+ # Batch 0
120
+ [
121
+ # Channel 0
122
+ [1, 1, 1, 0.5, 0]
123
+ ],
124
+ # Batch 1
125
+ [
126
+ # Channel 0
127
+ [1, 1, 0.5, 0, 0]
128
+ ],
129
+ ],
130
+ # Expected
131
+ [
132
+ # Batch 0
133
+ [
134
+ # Class 0
135
+ [0.870921, 0.857105, 0.781170, 0.544729, 0.476710],
136
+ # Class 1
137
+ [0.129078, 0.142894, 0.218830, 0.455271, 0.523290],
138
+ ],
139
+ # Batch 1
140
+ [
141
+ # Class 0
142
+ [0.867234, 0.852610, 0.648074, 0.334584, 0.386766],
143
+ # Class 1
144
+ [0.132766, 0.147390, 0.351926, 0.665416, 0.613234],
145
+ ],
146
+ ],
147
+ ],
148
+ [
149
+ # Case Description
150
+ "1 batche(s), 2 dimension(s), 3 classe(s), 2 channel(s)",
151
+ # Parameters
152
+ [
153
+ 5, # iterations
154
+ 1.0, # bilateral_weight
155
+ 0.3, # gaussian_weight
156
+ 5.0, # bilateral_spatial_sigma
157
+ 0.5, # bilateral_color_sigma
158
+ 5.0, # gaussian_spatial_sigma
159
+ 1.0, # update_factor
160
+ None, # compatibility_matrix
161
+ ],
162
+ # Input
163
+ [
164
+ # Batch 0
165
+ [
166
+ # Class 0
167
+ [
168
+ [0.0, 0.0, 0.0, 0.0, 0.0],
169
+ [0.0, 0.0, 0.0, 0.0, 0.0],
170
+ [0.0, 0.0, 0.0, 0.0, 0.0],
171
+ [0.0, 0.0, 0.0, 1.0, 1.0],
172
+ [0.0, 0.0, 0.0, 1.0, 1.0],
173
+ ],
174
+ # Class 1
175
+ [
176
+ [1.0, 1.0, 0.0, 0.0, 0.0],
177
+ [1.0, 1.0, 0.0, 0.0, 0.0],
178
+ [0.0, 0.0, 0.0, 0.0, 0.0],
179
+ [0.0, 0.0, 0.0, 0.0, 0.0],
180
+ [0.0, 0.0, 0.0, 0.0, 0.0],
181
+ ],
182
+ # Class 2
183
+ [
184
+ [0.0, 0.0, 0.0, 1.0, 1.0],
185
+ [0.0, 0.0, 1.0, 1.0, 1.0],
186
+ [0.0, 1.0, 1.0, 1.0, 0.0],
187
+ [1.0, 1.0, 1.0, 0.0, 0.0],
188
+ [1.0, 1.0, 0.0, 0.0, 0.0],
189
+ ],
190
+ ]
191
+ ],
192
+ # Features
193
+ [
194
+ # Batch 0
195
+ [
196
+ # Channel 0
197
+ [
198
+ [1.0, 1.0, 0.0, 0.0, 0.0],
199
+ [1.0, 1.0, 0.0, 0.0, 0.0],
200
+ [0.0, 0.0, 0.0, 0.0, 0.0],
201
+ [0.0, 0.0, 0.0, 0.0, 0.0],
202
+ [0.0, 0.0, 0.0, 0.0, 0.0],
203
+ ],
204
+ # Channel 1
205
+ [
206
+ [0.0, 0.0, 0.0, 0.0, 0.0],
207
+ [0.0, 0.0, 0.0, 0.0, 0.0],
208
+ [0.0, 0.0, 0.0, 0.0, 0.0],
209
+ [0.0, 0.0, 0.0, 1.0, 1.0],
210
+ [0.0, 0.0, 0.0, 1.0, 1.0],
211
+ ],
212
+ ]
213
+ ],
214
+ # Expected
215
+ [
216
+ # Batch 0
217
+ [
218
+ # Class 0
219
+ [
220
+ [0.159525, 0.161449, 0.270907, 0.152424, 0.152515],
221
+ [0.161763, 0.163849, 0.154026, 0.154187, 0.154360],
222
+ [0.273231, 0.154715, 0.155208, 0.155677, 0.275885],
223
+ [0.155076, 0.155748, 0.156349, 0.598796, 0.600179],
224
+ [0.156186, 0.156858, 0.277928, 0.598459, 0.600289],
225
+ ],
226
+ # Class 1
227
+ [
228
+ [0.647632, 0.639540, 0.276122, 0.155184, 0.155117],
229
+ [0.638555, 0.629703, 0.155613, 0.155552, 0.155509],
230
+ [0.276475, 0.156138, 0.156061, 0.155919, 0.275726],
231
+ [0.156109, 0.156397, 0.156575, 0.172626, 0.172270],
232
+ [0.156380, 0.156690, 0.277053, 0.172495, 0.172123],
233
+ ],
234
+ # Class 2
235
+ [
236
+ [0.192843, 0.199011, 0.452971, 0.692392, 0.692368],
237
+ [0.199682, 0.206448, 0.690361, 0.690261, 0.690130],
238
+ [0.450294, 0.689147, 0.688731, 0.688403, 0.448389],
239
+ [0.688815, 0.687855, 0.687076, 0.228579, 0.227552],
240
+ [0.687434, 0.686453, 0.445019, 0.229047, 0.227588],
241
+ ],
242
+ ]
243
+ ],
244
+ ],
245
+ [
246
+ # Case Description
247
+ "1 batche(s), 3 dimension(s), 2 classe(s), 1 channel(s)",
248
+ # Parameters
249
+ [
250
+ 2, # iterations
251
+ 1.0, # bilateral_weight
252
+ 0.3, # gaussian_weight
253
+ 5.0, # bilateral_spatial_sigma
254
+ 0.1, # bilateral_color_sigma
255
+ 5.0, # gaussian_spatial_sigma
256
+ 1.0, # update_factor
257
+ None, # compatibility_matrix
258
+ ],
259
+ # Input
260
+ [
261
+ # Batch 0
262
+ [
263
+ # Class 0
264
+ [
265
+ # Slice 0
266
+ [
267
+ [1.0, 1.0, 0.0, 0.0, 0.0],
268
+ [1.0, 1.0, 0.0, 0.0, 0.0],
269
+ [0.0, 0.0, 0.0, 0.0, 0.0],
270
+ [0.0, 0.0, 0.0, 0.0, 0.0],
271
+ [0.0, 0.0, 0.0, 0.0, 0.0],
272
+ ],
273
+ # Slice 1
274
+ [
275
+ [1.0, 1.0, 0.0, 0.0, 0.0],
276
+ [1.0, 1.0, 0.0, 0.0, 0.0],
277
+ [0.0, 0.0, 0.0, 0.0, 0.0],
278
+ [0.0, 0.0, 0.0, 0.0, 0.0],
279
+ [0.0, 0.0, 0.0, 0.0, 0.0],
280
+ ],
281
+ # Slice 2
282
+ [
283
+ [0.0, 0.0, 0.0, 0.0, 0.0],
284
+ [0.0, 0.0, 0.0, 0.0, 0.0],
285
+ [0.0, 0.0, 0.0, 0.0, 0.0],
286
+ [0.0, 0.0, 0.0, 0.0, 0.0],
287
+ [0.0, 0.0, 0.0, 0.0, 0.0],
288
+ ],
289
+ # Slice 3
290
+ [
291
+ [0.0, 0.0, 0.0, 0.0, 0.0],
292
+ [0.0, 0.0, 0.0, 0.0, 0.0],
293
+ [0.0, 0.0, 0.0, 0.0, 0.0],
294
+ [0.0, 0.0, 0.0, 0.0, 0.0],
295
+ [0.0, 0.0, 0.0, 0.0, 0.0],
296
+ ],
297
+ # Slice 4
298
+ [
299
+ [0.0, 0.0, 0.0, 0.0, 0.0],
300
+ [0.0, 0.0, 0.0, 0.0, 0.0],
301
+ [0.0, 0.0, 0.0, 0.0, 0.0],
302
+ [0.0, 0.0, 0.0, 0.0, 0.0],
303
+ [0.0, 0.0, 0.0, 0.0, 0.0],
304
+ ],
305
+ ],
306
+ # Class 1
307
+ [
308
+ # Slice 0
309
+ [
310
+ [0.0, 0.0, 0.0, 0.0, 0.0],
311
+ [0.0, 0.0, 0.0, 0.0, 0.0],
312
+ [0.0, 0.0, 0.0, 0.0, 0.0],
313
+ [0.0, 0.0, 0.0, 0.0, 0.0],
314
+ [0.0, 0.0, 0.0, 0.0, 0.0],
315
+ ],
316
+ # Slice 1
317
+ [
318
+ [0.0, 0.0, 0.0, 0.0, 0.0],
319
+ [0.0, 0.0, 0.0, 0.0, 0.0],
320
+ [0.0, 0.0, 0.0, 0.0, 0.0],
321
+ [0.0, 0.0, 0.0, 0.0, 0.0],
322
+ [0.0, 0.0, 0.0, 0.0, 0.0],
323
+ ],
324
+ # Slice 2
325
+ [
326
+ [0.0, 0.0, 0.0, 0.0, 0.0],
327
+ [0.0, 0.0, 0.0, 0.0, 0.0],
328
+ [0.0, 0.0, 0.0, 0.0, 0.0],
329
+ [0.0, 0.0, 0.0, 0.0, 0.0],
330
+ [0.0, 0.0, 0.0, 0.0, 0.0],
331
+ ],
332
+ # Slice 3
333
+ [
334
+ [0.0, 0.0, 0.0, 0.0, 0.0],
335
+ [0.0, 0.0, 0.0, 0.0, 0.0],
336
+ [0.0, 0.0, 0.0, 0.0, 0.0],
337
+ [0.0, 0.0, 0.0, 1.0, 1.0],
338
+ [0.0, 0.0, 0.0, 1.0, 1.0],
339
+ ],
340
+ # Slice 4
341
+ [
342
+ [0.0, 0.0, 0.0, 0.0, 0.0],
343
+ [0.0, 0.0, 0.0, 0.0, 0.0],
344
+ [0.0, 0.0, 0.0, 0.0, 0.0],
345
+ [0.0, 0.0, 0.0, 1.0, 1.0],
346
+ [0.0, 0.0, 0.0, 1.0, 1.0],
347
+ ],
348
+ ],
349
+ ]
350
+ ],
351
+ # Features
352
+ [
353
+ # Batch 0
354
+ [
355
+ # Channel 0
356
+ [
357
+ # Slice 0
358
+ [
359
+ [0.5, 0.5, 0.5, 0.0, 0.0],
360
+ [0.5, 0.5, 0.5, 0.0, 0.0],
361
+ [0.5, 0.5, 0.5, 0.0, 0.0],
362
+ [0.0, 0.0, 0.0, 0.0, 0.0],
363
+ [0.0, 0.0, 0.0, 0.0, 0.0],
364
+ ],
365
+ # Slice 1
366
+ [
367
+ [0.5, 0.5, 0.5, 0.0, 0.0],
368
+ [0.5, 0.5, 0.5, 0.0, 0.0],
369
+ [0.5, 0.5, 0.5, 0.0, 0.0],
370
+ [0.0, 0.0, 0.0, 0.0, 0.0],
371
+ [0.0, 0.0, 0.0, 0.0, 0.0],
372
+ ],
373
+ # Slice 2
374
+ [
375
+ [0.5, 0.5, 0.5, 0.0, 0.0],
376
+ [0.5, 0.5, 0.5, 0.0, 0.0],
377
+ [0.5, 0.5, 0.8, 1.0, 1.0],
378
+ [0.0, 0.0, 1.0, 1.0, 1.0],
379
+ [0.0, 0.0, 1.0, 1.0, 1.0],
380
+ ],
381
+ # Slice 3
382
+ [
383
+ [0.0, 0.0, 0.0, 0.0, 0.0],
384
+ [0.0, 0.0, 0.0, 0.0, 0.0],
385
+ [0.0, 0.0, 1.0, 1.0, 1.0],
386
+ [0.0, 0.0, 1.0, 1.0, 1.0],
387
+ [0.0, 0.0, 1.0, 1.0, 1.0],
388
+ ],
389
+ # Slice 4
390
+ [
391
+ [0.0, 0.0, 0.0, 0.0, 0.0],
392
+ [0.0, 0.0, 0.0, 0.0, 0.0],
393
+ [0.0, 0.0, 1.0, 1.0, 1.0],
394
+ [0.0, 0.0, 1.0, 1.0, 1.0],
395
+ [0.0, 0.0, 1.0, 1.0, 1.0],
396
+ ],
397
+ ]
398
+ ]
399
+ ],
400
+ # Expected
401
+ [
402
+ # Batch 0
403
+ [
404
+ # Class 0
405
+ [
406
+ # Slice 0
407
+ [
408
+ [0.775729, 0.774871, 0.557369, 0.501589, 0.501239],
409
+ [0.774804, 0.774011, 0.556061, 0.501171, 0.500821],
410
+ [0.557136, 0.556079, 0.554716, 0.500764, 0.500415],
411
+ [0.501416, 0.501049, 0.500709, 0.500370, 0.500021],
412
+ [0.500989, 0.500631, 0.500300, 0.499986, 0.499665],
413
+ ],
414
+ # Slice 1
415
+ [
416
+ [0.774559, 0.773821, 0.555753, 0.501108, 0.500757],
417
+ [0.773701, 0.772905, 0.554399, 0.500680, 0.500342],
418
+ [0.555462, 0.554443, 0.553025, 0.500300, 0.499967],
419
+ [0.500892, 0.500562, 0.500256, 0.499931, 0.499666],
420
+ [0.500477, 0.500156, 0.499859, 0.499572, 0.499355],
421
+ ],
422
+ # Slice 2
423
+ [
424
+ [0.556395, 0.555530, 0.554037, 0.500641, 0.500290],
425
+ [0.555370, 0.554400, 0.552711, 0.500238, 0.499967],
426
+ [0.553709, 0.552798, 0.459696, 0.449011, 0.448406],
427
+ [0.500418, 0.500123, 0.448768, 0.448438, 0.447680],
428
+ [0.500064, 0.499770, 0.448217, 0.447788, 0.446945],
429
+ ],
430
+ # Slice 3
431
+ [
432
+ [0.500963, 0.500754, 0.500531, 0.500187, 0.499956],
433
+ [0.500662, 0.500394, 0.500144, 0.499822, 0.499657],
434
+ [0.500353, 0.500090, 0.448429, 0.448021, 0.447234],
435
+ [0.499966, 0.499724, 0.447893, 0.229453, 0.228867],
436
+ [0.499779, 0.499514, 0.447548, 0.229087, 0.228434],
437
+ ],
438
+ # Slice 4
439
+ [
440
+ [0.500406, 0.500208, 0.500018, 0.499775, 0.499615],
441
+ [0.500126, 0.499892, 0.499725, 0.499501, 0.499322],
442
+ [0.499869, 0.499645, 0.447670, 0.446978, 0.446165],
443
+ [0.499609, 0.499403, 0.447168, 0.228777, 0.228153],
444
+ [0.499467, 0.499255, 0.446656, 0.228424, 0.227778],
445
+ ],
446
+ ],
447
+ # Class 1
448
+ [
449
+ # Slice 0
450
+ [
451
+ [0.224271, 0.225129, 0.442631, 0.498411, 0.498761],
452
+ [0.225196, 0.225989, 0.443939, 0.498829, 0.499179],
453
+ [0.442864, 0.443921, 0.445284, 0.499236, 0.499585],
454
+ [0.498584, 0.498951, 0.499291, 0.499630, 0.499979],
455
+ [0.499011, 0.499369, 0.499700, 0.500014, 0.500335],
456
+ ],
457
+ # Slice 1
458
+ [
459
+ [0.225441, 0.226179, 0.444247, 0.498892, 0.499243],
460
+ [0.226299, 0.227095, 0.445601, 0.499320, 0.499658],
461
+ [0.444538, 0.445557, 0.446975, 0.499700, 0.500033],
462
+ [0.499108, 0.499438, 0.499744, 0.500069, 0.500334],
463
+ [0.499523, 0.499844, 0.500141, 0.500428, 0.500645],
464
+ ],
465
+ # Slice 2
466
+ [
467
+ [0.443605, 0.444470, 0.445963, 0.499359, 0.499710],
468
+ [0.444630, 0.445600, 0.447289, 0.499762, 0.500033],
469
+ [0.446291, 0.447202, 0.540304, 0.550989, 0.551594],
470
+ [0.499582, 0.499877, 0.551232, 0.551562, 0.552320],
471
+ [0.499936, 0.500230, 0.551783, 0.552212, 0.553055],
472
+ ],
473
+ # Slice 3
474
+ [
475
+ [0.499037, 0.499246, 0.499469, 0.499813, 0.500044],
476
+ [0.499338, 0.499606, 0.499856, 0.500178, 0.500343],
477
+ [0.499647, 0.499910, 0.551571, 0.551979, 0.552766],
478
+ [0.500034, 0.500276, 0.552106, 0.770547, 0.771133],
479
+ [0.500221, 0.500486, 0.552452, 0.770913, 0.771566],
480
+ ],
481
+ # Slice 4
482
+ [
483
+ [0.499594, 0.499792, 0.499982, 0.500225, 0.500385],
484
+ [0.499874, 0.500108, 0.500275, 0.500499, 0.500678],
485
+ [0.500131, 0.500355, 0.552330, 0.553022, 0.553835],
486
+ [0.500391, 0.500597, 0.552832, 0.771223, 0.771847],
487
+ [0.500533, 0.500745, 0.553344, 0.771576, 0.772222],
488
+ ],
489
+ ],
490
+ ]
491
+ ],
492
+ ],
493
+ ]
494
+
495
+
496
+ @skip_if_no_cpp_extension
497
+ class CRFTestCaseCpu(unittest.TestCase):
498
+ @parameterized.expand(TEST_CASES)
499
+ def test(self, test_case_description, params, input, features, expected):
500
+ # Create input tensors
501
+ input_tensor = torch.from_numpy(np.array(input)).to(dtype=torch.float, device=torch.device("cpu"))
502
+ feature_tensor = torch.from_numpy(np.array(features)).to(dtype=torch.float, device=torch.device("cpu"))
503
+
504
+ # apply filter
505
+ crf = CRF(*params)
506
+ output = crf(input_tensor, feature_tensor).cpu().numpy()
507
+
508
+ # Ensure result are as expected
509
+ np.testing.assert_allclose(output, expected, atol=1e-4)
510
+
511
+
512
+ if __name__ == "__main__":
513
+ unittest.main()