monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl

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Files changed (776) hide show
  1. monai/__init__.py +1 -1
  2. monai/_version.py +3 -3
  3. monai/apps/auto3dseg/transforms.py +1 -4
  4. monai/data/utils.py +6 -13
  5. monai/inferers/utils.py +1 -2
  6. monai/losses/dice.py +2 -14
  7. monai/losses/ds_loss.py +1 -3
  8. monai/networks/layers/simplelayers.py +2 -14
  9. monai/networks/utils.py +4 -16
  10. monai/transforms/compose.py +28 -11
  11. monai/transforms/croppad/array.py +1 -6
  12. monai/transforms/io/array.py +0 -1
  13. monai/transforms/transform.py +15 -6
  14. monai/transforms/utils.py +1 -2
  15. monai/utils/tf32.py +0 -10
  16. monai/visualize/class_activation_maps.py +5 -8
  17. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
  18. monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
  19. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
  20. tests/apps/__init__.py +10 -0
  21. tests/apps/deepedit/__init__.py +10 -0
  22. tests/apps/deepedit/test_deepedit_transforms.py +314 -0
  23. tests/apps/deepgrow/__init__.py +10 -0
  24. tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
  25. tests/apps/deepgrow/transforms/__init__.py +10 -0
  26. tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
  27. tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
  28. tests/apps/detection/__init__.py +10 -0
  29. tests/apps/detection/metrics/__init__.py +10 -0
  30. tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
  31. tests/apps/detection/networks/__init__.py +10 -0
  32. tests/apps/detection/networks/test_retinanet.py +210 -0
  33. tests/apps/detection/networks/test_retinanet_detector.py +203 -0
  34. tests/apps/detection/test_box_transform.py +370 -0
  35. tests/apps/detection/utils/__init__.py +10 -0
  36. tests/apps/detection/utils/test_anchor_box.py +88 -0
  37. tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
  38. tests/apps/detection/utils/test_box_coder.py +43 -0
  39. tests/apps/detection/utils/test_detector_boxselector.py +67 -0
  40. tests/apps/detection/utils/test_detector_utils.py +96 -0
  41. tests/apps/detection/utils/test_hardnegsampler.py +54 -0
  42. tests/apps/nuclick/__init__.py +10 -0
  43. tests/apps/nuclick/test_nuclick_transforms.py +259 -0
  44. tests/apps/pathology/__init__.py +10 -0
  45. tests/apps/pathology/handlers/__init__.py +10 -0
  46. tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
  47. tests/apps/pathology/test_lesion_froc.py +333 -0
  48. tests/apps/pathology/test_pathology_prob_nms.py +55 -0
  49. tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
  50. tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
  51. tests/apps/pathology/transforms/__init__.py +10 -0
  52. tests/apps/pathology/transforms/post/__init__.py +10 -0
  53. tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
  54. tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
  55. tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
  56. tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
  57. tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
  58. tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
  59. tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
  60. tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
  61. tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
  62. tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
  63. tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
  64. tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
  65. tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
  66. tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
  67. tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
  68. tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
  69. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
  70. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
  71. tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
  72. tests/apps/pathology/transforms/post/test_watershed.py +60 -0
  73. tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
  74. tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
  75. tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
  76. tests/apps/reconstruction/__init__.py +10 -0
  77. tests/apps/reconstruction/nets/__init__.py +10 -0
  78. tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
  79. tests/apps/reconstruction/test_complex_utils.py +77 -0
  80. tests/apps/reconstruction/test_fastmri_reader.py +82 -0
  81. tests/apps/reconstruction/test_mri_utils.py +37 -0
  82. tests/apps/reconstruction/transforms/__init__.py +10 -0
  83. tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
  84. tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
  85. tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
  86. tests/apps/test_auto3dseg_bundlegen.py +156 -0
  87. tests/apps/test_check_hash.py +53 -0
  88. tests/apps/test_cross_validation.py +74 -0
  89. tests/apps/test_decathlondataset.py +93 -0
  90. tests/apps/test_download_and_extract.py +70 -0
  91. tests/apps/test_download_url_yandex.py +45 -0
  92. tests/apps/test_mednistdataset.py +72 -0
  93. tests/apps/test_mmar_download.py +154 -0
  94. tests/apps/test_tciadataset.py +123 -0
  95. tests/apps/vista3d/__init__.py +10 -0
  96. tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
  97. tests/apps/vista3d/test_vista3d_sampler.py +100 -0
  98. tests/apps/vista3d/test_vista3d_transforms.py +94 -0
  99. tests/bundle/__init__.py +10 -0
  100. tests/bundle/test_bundle_ckpt_export.py +107 -0
  101. tests/bundle/test_bundle_download.py +435 -0
  102. tests/bundle/test_bundle_get_data.py +94 -0
  103. tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
  104. tests/bundle/test_bundle_trt_export.py +147 -0
  105. tests/bundle/test_bundle_utils.py +149 -0
  106. tests/bundle/test_bundle_verify_metadata.py +66 -0
  107. tests/bundle/test_bundle_verify_net.py +76 -0
  108. tests/bundle/test_bundle_workflow.py +272 -0
  109. tests/bundle/test_component_locator.py +38 -0
  110. tests/bundle/test_config_item.py +138 -0
  111. tests/bundle/test_config_parser.py +392 -0
  112. tests/bundle/test_reference_resolver.py +114 -0
  113. tests/config/__init__.py +10 -0
  114. tests/config/test_cv2_dist.py +53 -0
  115. tests/engines/__init__.py +10 -0
  116. tests/engines/test_ensemble_evaluator.py +94 -0
  117. tests/engines/test_prepare_batch_default.py +76 -0
  118. tests/engines/test_prepare_batch_default_dist.py +76 -0
  119. tests/engines/test_prepare_batch_diffusion.py +104 -0
  120. tests/engines/test_prepare_batch_extra_input.py +80 -0
  121. tests/fl/__init__.py +10 -0
  122. tests/fl/monai_algo/__init__.py +10 -0
  123. tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
  124. tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
  125. tests/fl/test_fl_monai_algo_stats.py +81 -0
  126. tests/fl/utils/__init__.py +10 -0
  127. tests/fl/utils/test_fl_exchange_object.py +63 -0
  128. tests/handlers/__init__.py +10 -0
  129. tests/handlers/test_handler_checkpoint_loader.py +182 -0
  130. tests/handlers/test_handler_checkpoint_saver.py +233 -0
  131. tests/handlers/test_handler_classification_saver.py +64 -0
  132. tests/handlers/test_handler_classification_saver_dist.py +77 -0
  133. tests/handlers/test_handler_clearml_image.py +65 -0
  134. tests/handlers/test_handler_clearml_stats.py +65 -0
  135. tests/handlers/test_handler_confusion_matrix.py +104 -0
  136. tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
  137. tests/handlers/test_handler_decollate_batch.py +66 -0
  138. tests/handlers/test_handler_early_stop.py +68 -0
  139. tests/handlers/test_handler_garbage_collector.py +73 -0
  140. tests/handlers/test_handler_hausdorff_distance.py +111 -0
  141. tests/handlers/test_handler_ignite_metric.py +191 -0
  142. tests/handlers/test_handler_lr_scheduler.py +94 -0
  143. tests/handlers/test_handler_mean_dice.py +98 -0
  144. tests/handlers/test_handler_mean_iou.py +76 -0
  145. tests/handlers/test_handler_metrics_reloaded.py +149 -0
  146. tests/handlers/test_handler_metrics_saver.py +89 -0
  147. tests/handlers/test_handler_metrics_saver_dist.py +120 -0
  148. tests/handlers/test_handler_mlflow.py +296 -0
  149. tests/handlers/test_handler_nvtx.py +93 -0
  150. tests/handlers/test_handler_panoptic_quality.py +89 -0
  151. tests/handlers/test_handler_parameter_scheduler.py +136 -0
  152. tests/handlers/test_handler_post_processing.py +74 -0
  153. tests/handlers/test_handler_prob_map_producer.py +111 -0
  154. tests/handlers/test_handler_regression_metrics.py +160 -0
  155. tests/handlers/test_handler_regression_metrics_dist.py +245 -0
  156. tests/handlers/test_handler_rocauc.py +48 -0
  157. tests/handlers/test_handler_rocauc_dist.py +54 -0
  158. tests/handlers/test_handler_stats.py +281 -0
  159. tests/handlers/test_handler_surface_distance.py +113 -0
  160. tests/handlers/test_handler_tb_image.py +61 -0
  161. tests/handlers/test_handler_tb_stats.py +166 -0
  162. tests/handlers/test_handler_validation.py +59 -0
  163. tests/handlers/test_trt_compile.py +145 -0
  164. tests/handlers/test_write_metrics_reports.py +68 -0
  165. tests/inferers/__init__.py +10 -0
  166. tests/inferers/test_avg_merger.py +179 -0
  167. tests/inferers/test_controlnet_inferers.py +1310 -0
  168. tests/inferers/test_diffusion_inferer.py +236 -0
  169. tests/inferers/test_latent_diffusion_inferer.py +824 -0
  170. tests/inferers/test_patch_inferer.py +309 -0
  171. tests/inferers/test_saliency_inferer.py +55 -0
  172. tests/inferers/test_slice_inferer.py +57 -0
  173. tests/inferers/test_sliding_window_inference.py +377 -0
  174. tests/inferers/test_sliding_window_splitter.py +284 -0
  175. tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
  176. tests/inferers/test_zarr_avg_merger.py +326 -0
  177. tests/integration/__init__.py +10 -0
  178. tests/integration/test_auto3dseg_ensemble.py +211 -0
  179. tests/integration/test_auto3dseg_hpo.py +189 -0
  180. tests/integration/test_deepedit_interaction.py +122 -0
  181. tests/integration/test_downsample_block.py +50 -0
  182. tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
  183. tests/integration/test_integration_autorunner.py +201 -0
  184. tests/integration/test_integration_bundle_run.py +240 -0
  185. tests/integration/test_integration_classification_2d.py +282 -0
  186. tests/integration/test_integration_determinism.py +95 -0
  187. tests/integration/test_integration_fast_train.py +231 -0
  188. tests/integration/test_integration_gpu_customization.py +159 -0
  189. tests/integration/test_integration_lazy_samples.py +219 -0
  190. tests/integration/test_integration_nnunetv2_runner.py +96 -0
  191. tests/integration/test_integration_segmentation_3d.py +304 -0
  192. tests/integration/test_integration_sliding_window.py +100 -0
  193. tests/integration/test_integration_stn.py +133 -0
  194. tests/integration/test_integration_unet_2d.py +67 -0
  195. tests/integration/test_integration_workers.py +61 -0
  196. tests/integration/test_integration_workflows.py +365 -0
  197. tests/integration/test_integration_workflows_adversarial.py +173 -0
  198. tests/integration/test_integration_workflows_gan.py +158 -0
  199. tests/integration/test_loader_semaphore.py +48 -0
  200. tests/integration/test_mapping_filed.py +122 -0
  201. tests/integration/test_meta_affine.py +183 -0
  202. tests/integration/test_metatensor_integration.py +114 -0
  203. tests/integration/test_module_list.py +76 -0
  204. tests/integration/test_one_of.py +283 -0
  205. tests/integration/test_pad_collation.py +124 -0
  206. tests/integration/test_reg_loss_integration.py +107 -0
  207. tests/integration/test_retinanet_predict_utils.py +154 -0
  208. tests/integration/test_seg_loss_integration.py +159 -0
  209. tests/integration/test_spatial_combine_transforms.py +185 -0
  210. tests/integration/test_testtimeaugmentation.py +186 -0
  211. tests/integration/test_vis_gradbased.py +69 -0
  212. tests/integration/test_vista3d_utils.py +159 -0
  213. tests/losses/__init__.py +10 -0
  214. tests/losses/deform/__init__.py +10 -0
  215. tests/losses/deform/test_bending_energy.py +88 -0
  216. tests/losses/deform/test_diffusion_loss.py +117 -0
  217. tests/losses/image_dissimilarity/__init__.py +10 -0
  218. tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
  219. tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
  220. tests/losses/test_adversarial_loss.py +94 -0
  221. tests/losses/test_barlow_twins_loss.py +109 -0
  222. tests/losses/test_cldice_loss.py +51 -0
  223. tests/losses/test_contrastive_loss.py +86 -0
  224. tests/losses/test_dice_ce_loss.py +123 -0
  225. tests/losses/test_dice_focal_loss.py +124 -0
  226. tests/losses/test_dice_loss.py +227 -0
  227. tests/losses/test_ds_loss.py +189 -0
  228. tests/losses/test_focal_loss.py +379 -0
  229. tests/losses/test_generalized_dice_focal_loss.py +85 -0
  230. tests/losses/test_generalized_dice_loss.py +221 -0
  231. tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
  232. tests/losses/test_giou_loss.py +62 -0
  233. tests/losses/test_hausdorff_loss.py +264 -0
  234. tests/losses/test_masked_dice_loss.py +152 -0
  235. tests/losses/test_masked_loss.py +87 -0
  236. tests/losses/test_multi_scale.py +86 -0
  237. tests/losses/test_nacl_loss.py +167 -0
  238. tests/losses/test_perceptual_loss.py +122 -0
  239. tests/losses/test_spectral_loss.py +86 -0
  240. tests/losses/test_ssim_loss.py +59 -0
  241. tests/losses/test_sure_loss.py +72 -0
  242. tests/losses/test_tversky_loss.py +198 -0
  243. tests/losses/test_unified_focal_loss.py +66 -0
  244. tests/metrics/__init__.py +10 -0
  245. tests/metrics/test_compute_confusion_matrix.py +294 -0
  246. tests/metrics/test_compute_f_beta.py +80 -0
  247. tests/metrics/test_compute_fid_metric.py +40 -0
  248. tests/metrics/test_compute_froc.py +143 -0
  249. tests/metrics/test_compute_generalized_dice.py +240 -0
  250. tests/metrics/test_compute_meandice.py +306 -0
  251. tests/metrics/test_compute_meaniou.py +223 -0
  252. tests/metrics/test_compute_mmd_metric.py +56 -0
  253. tests/metrics/test_compute_multiscalessim_metric.py +83 -0
  254. tests/metrics/test_compute_panoptic_quality.py +113 -0
  255. tests/metrics/test_compute_regression_metrics.py +196 -0
  256. tests/metrics/test_compute_roc_auc.py +155 -0
  257. tests/metrics/test_compute_variance.py +147 -0
  258. tests/metrics/test_cumulative.py +63 -0
  259. tests/metrics/test_cumulative_average.py +74 -0
  260. tests/metrics/test_cumulative_average_dist.py +48 -0
  261. tests/metrics/test_hausdorff_distance.py +209 -0
  262. tests/metrics/test_label_quality_score.py +134 -0
  263. tests/metrics/test_loss_metric.py +57 -0
  264. tests/metrics/test_metrics_reloaded.py +96 -0
  265. tests/metrics/test_ssim_metric.py +78 -0
  266. tests/metrics/test_surface_dice.py +416 -0
  267. tests/metrics/test_surface_distance.py +186 -0
  268. tests/networks/__init__.py +10 -0
  269. tests/networks/blocks/__init__.py +10 -0
  270. tests/networks/blocks/dints_block/__init__.py +10 -0
  271. tests/networks/blocks/dints_block/test_acn_block.py +41 -0
  272. tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
  273. tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
  274. tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
  275. tests/networks/blocks/test_adn.py +86 -0
  276. tests/networks/blocks/test_convolutions.py +156 -0
  277. tests/networks/blocks/test_crf_cpu.py +513 -0
  278. tests/networks/blocks/test_crf_cuda.py +528 -0
  279. tests/networks/blocks/test_crossattention.py +185 -0
  280. tests/networks/blocks/test_denseblock.py +105 -0
  281. tests/networks/blocks/test_dynunet_block.py +116 -0
  282. tests/networks/blocks/test_fpn_block.py +88 -0
  283. tests/networks/blocks/test_localnet_block.py +121 -0
  284. tests/networks/blocks/test_mlp.py +78 -0
  285. tests/networks/blocks/test_patchembedding.py +212 -0
  286. tests/networks/blocks/test_regunet_block.py +103 -0
  287. tests/networks/blocks/test_se_block.py +85 -0
  288. tests/networks/blocks/test_se_blocks.py +78 -0
  289. tests/networks/blocks/test_segresnet_block.py +57 -0
  290. tests/networks/blocks/test_selfattention.py +232 -0
  291. tests/networks/blocks/test_simple_aspp.py +87 -0
  292. tests/networks/blocks/test_spatialattention.py +55 -0
  293. tests/networks/blocks/test_subpixel_upsample.py +87 -0
  294. tests/networks/blocks/test_text_encoding.py +49 -0
  295. tests/networks/blocks/test_transformerblock.py +90 -0
  296. tests/networks/blocks/test_unetr_block.py +158 -0
  297. tests/networks/blocks/test_upsample_block.py +134 -0
  298. tests/networks/blocks/warp/__init__.py +10 -0
  299. tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
  300. tests/networks/blocks/warp/test_warp.py +250 -0
  301. tests/networks/layers/__init__.py +10 -0
  302. tests/networks/layers/filtering/__init__.py +10 -0
  303. tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
  304. tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
  305. tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
  306. tests/networks/layers/filtering/test_phl_cpu.py +259 -0
  307. tests/networks/layers/filtering/test_phl_cuda.py +167 -0
  308. tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
  309. tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
  310. tests/networks/layers/test_affine_transform.py +385 -0
  311. tests/networks/layers/test_apply_filter.py +89 -0
  312. tests/networks/layers/test_channel_pad.py +51 -0
  313. tests/networks/layers/test_conjugate_gradient.py +56 -0
  314. tests/networks/layers/test_drop_path.py +46 -0
  315. tests/networks/layers/test_gaussian.py +317 -0
  316. tests/networks/layers/test_gaussian_filter.py +206 -0
  317. tests/networks/layers/test_get_layers.py +65 -0
  318. tests/networks/layers/test_gmm.py +314 -0
  319. tests/networks/layers/test_grid_pull.py +93 -0
  320. tests/networks/layers/test_hilbert_transform.py +131 -0
  321. tests/networks/layers/test_lltm.py +62 -0
  322. tests/networks/layers/test_median_filter.py +52 -0
  323. tests/networks/layers/test_polyval.py +55 -0
  324. tests/networks/layers/test_preset_filters.py +136 -0
  325. tests/networks/layers/test_savitzky_golay_filter.py +141 -0
  326. tests/networks/layers/test_separable_filter.py +87 -0
  327. tests/networks/layers/test_skip_connection.py +48 -0
  328. tests/networks/layers/test_vector_quantizer.py +89 -0
  329. tests/networks/layers/test_weight_init.py +50 -0
  330. tests/networks/nets/__init__.py +10 -0
  331. tests/networks/nets/dints/__init__.py +10 -0
  332. tests/networks/nets/dints/test_dints_cell.py +110 -0
  333. tests/networks/nets/dints/test_dints_mixop.py +84 -0
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  681. tests/transforms/test_std_shift_intensityd.py +74 -0
  682. tests/transforms/test_threshold_intensity.py +38 -0
  683. tests/transforms/test_threshold_intensityd.py +58 -0
  684. tests/transforms/test_to_contiguous.py +47 -0
  685. tests/transforms/test_to_cupy.py +112 -0
  686. tests/transforms/test_to_cupyd.py +76 -0
  687. tests/transforms/test_to_device.py +42 -0
  688. tests/transforms/test_to_deviced.py +37 -0
  689. tests/transforms/test_to_numpy.py +85 -0
  690. tests/transforms/test_to_numpyd.py +68 -0
  691. tests/transforms/test_to_pil.py +52 -0
  692. tests/transforms/test_to_pild.py +50 -0
  693. tests/transforms/test_to_tensor.py +60 -0
  694. tests/transforms/test_to_tensord.py +71 -0
  695. tests/transforms/test_torchvision.py +66 -0
  696. tests/transforms/test_torchvisiond.py +63 -0
  697. tests/transforms/test_transform.py +62 -0
  698. tests/transforms/test_transpose.py +41 -0
  699. tests/transforms/test_transposed.py +52 -0
  700. tests/transforms/test_ultrasound_confidence_map_transform.py +711 -0
  701. tests/transforms/test_utils_pytorch_numpy_unification.py +90 -0
  702. tests/transforms/test_vote_ensemble.py +84 -0
  703. tests/transforms/test_vote_ensembled.py +107 -0
  704. tests/transforms/test_with_allow_missing_keys.py +76 -0
  705. tests/transforms/test_zoom.py +120 -0
  706. tests/transforms/test_zoomd.py +94 -0
  707. tests/transforms/transform/__init__.py +10 -0
  708. tests/transforms/transform/test_randomizable.py +52 -0
  709. tests/transforms/transform/test_randomizable_transform_type.py +37 -0
  710. tests/transforms/utility/__init__.py +10 -0
  711. tests/transforms/utility/test_apply_transform_to_points.py +81 -0
  712. tests/transforms/utility/test_apply_transform_to_pointsd.py +185 -0
  713. tests/transforms/utility/test_identity.py +29 -0
  714. tests/transforms/utility/test_identityd.py +30 -0
  715. tests/transforms/utility/test_lambda.py +71 -0
  716. tests/transforms/utility/test_lambdad.py +83 -0
  717. tests/transforms/utility/test_rand_lambda.py +87 -0
  718. tests/transforms/utility/test_rand_lambdad.py +77 -0
  719. tests/transforms/utility/test_simulatedelay.py +36 -0
  720. tests/transforms/utility/test_simulatedelayd.py +36 -0
  721. tests/transforms/utility/test_splitdim.py +52 -0
  722. tests/transforms/utility/test_splitdimd.py +96 -0
  723. tests/transforms/utils/__init__.py +10 -0
  724. tests/transforms/utils/test_correct_crop_centers.py +36 -0
  725. tests/transforms/utils/test_get_unique_labels.py +45 -0
  726. tests/transforms/utils/test_print_transform_backends.py +29 -0
  727. tests/transforms/utils/test_soft_clip.py +125 -0
  728. tests/utils/__init__.py +10 -0
  729. tests/utils/enums/__init__.py +10 -0
  730. tests/utils/enums/test_hovernet_loss.py +190 -0
  731. tests/utils/enums/test_ordering.py +289 -0
  732. tests/utils/enums/test_wsireader.py +663 -0
  733. tests/utils/misc/__init__.py +10 -0
  734. tests/utils/misc/test_ensure_tuple.py +53 -0
  735. tests/utils/misc/test_monai_env_vars.py +44 -0
  736. tests/utils/misc/test_monai_utils_misc.py +103 -0
  737. tests/utils/misc/test_str2bool.py +34 -0
  738. tests/utils/misc/test_str2list.py +33 -0
  739. tests/utils/test_alias.py +44 -0
  740. tests/utils/test_component_store.py +73 -0
  741. tests/utils/test_deprecated.py +455 -0
  742. tests/utils/test_enum_bound_interp.py +75 -0
  743. tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
  744. tests/utils/test_get_package_version.py +34 -0
  745. tests/utils/test_handler_logfile.py +84 -0
  746. tests/utils/test_handler_metric_logger.py +62 -0
  747. tests/utils/test_list_to_dict.py +43 -0
  748. tests/utils/test_look_up_option.py +87 -0
  749. tests/utils/test_optional_import.py +80 -0
  750. tests/utils/test_pad_mode.py +39 -0
  751. tests/utils/test_profiling.py +208 -0
  752. tests/utils/test_rankfilter_dist.py +77 -0
  753. tests/utils/test_require_pkg.py +83 -0
  754. tests/utils/test_sample_slices.py +43 -0
  755. tests/utils/test_set_determinism.py +74 -0
  756. tests/utils/test_squeeze_unsqueeze.py +71 -0
  757. tests/utils/test_state_cacher.py +67 -0
  758. tests/utils/test_torchscript_utils.py +113 -0
  759. tests/utils/test_version.py +91 -0
  760. tests/utils/test_version_after.py +65 -0
  761. tests/utils/type_conversion/__init__.py +10 -0
  762. tests/utils/type_conversion/test_convert_data_type.py +152 -0
  763. tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
  764. tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
  765. tests/visualize/__init__.py +10 -0
  766. tests/visualize/test_img2tensorboard.py +46 -0
  767. tests/visualize/test_occlusion_sensitivity.py +128 -0
  768. tests/visualize/test_plot_2d_or_3d_image.py +74 -0
  769. tests/visualize/test_vis_cam.py +98 -0
  770. tests/visualize/test_vis_gradcam.py +211 -0
  771. tests/visualize/utils/__init__.py +10 -0
  772. tests/visualize/utils/test_blend_images.py +63 -0
  773. tests/visualize/utils/test_matshow3d.py +133 -0
  774. monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
  775. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
  776. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
@@ -0,0 +1,152 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ import torch
18
+ from parameterized import parameterized
19
+
20
+ from monai.losses import MaskedDiceLoss
21
+
22
+ TEST_CASES = [
23
+ [ # shape: (1, 1, 2, 2), (1, 1, 2, 2)
24
+ {"include_background": True, "sigmoid": True, "smooth_nr": 1e-6, "smooth_dr": 1e-6},
25
+ {
26
+ "input": torch.tensor([[[[1.0, -1.0], [-1.0, 1.0]]]]),
27
+ "target": torch.tensor([[[[1.0, 0.0], [1.0, 1.0]]]]),
28
+ "mask": torch.tensor([[[[0.0, 0.0], [1.0, 1.0]]]]),
29
+ },
30
+ 0.500,
31
+ ],
32
+ [ # shape: (2, 1, 2, 2), (2, 1, 2, 2)
33
+ {"include_background": True, "sigmoid": True, "smooth_nr": 1e-4, "smooth_dr": 1e-4},
34
+ {
35
+ "input": torch.tensor([[[[1.0, -1.0], [-1.0, 1.0]]], [[[1.0, -1.0], [-1.0, 1.0]]]]),
36
+ "target": torch.tensor([[[[1.0, 1.0], [1.0, 1.0]]], [[[1.0, 0.0], [1.0, 0.0]]]]),
37
+ "mask": torch.tensor([[[[1.0, 1.0], [1.0, 1.0]]], [[[1.0, 1.0], [0.0, 0.0]]]]),
38
+ },
39
+ 0.422969,
40
+ ],
41
+ [ # shape: (2, 2, 3), (2, 1, 3)
42
+ {"include_background": False, "to_onehot_y": True, "smooth_nr": 0, "smooth_dr": 0},
43
+ {
44
+ "input": torch.tensor([[[1.0, 1.0, 0.0], [0.0, 0.0, 1.0]], [[1.0, 0.0, 1.0], [0.0, 1.0, 0.0]]]),
45
+ "target": torch.tensor([[[0.0, 0.0, 1.0]], [[0.0, 1.0, 0.0]]]),
46
+ "mask": torch.tensor([[[1.0, 1.0, 1.0]], [[0.0, 1.0, 0.0]]]),
47
+ },
48
+ 0.0,
49
+ ],
50
+ [ # shape: (2, 2, 3), (2, 1, 3)
51
+ {"include_background": True, "to_onehot_y": True, "sigmoid": True, "smooth_nr": 1e-4, "smooth_dr": 1e-4},
52
+ {
53
+ "input": torch.tensor([[[-1.0, 0.0, 1.0], [1.0, 0.0, -1.0]], [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]]),
54
+ "target": torch.tensor([[[1.0, 0.0, 0.0]], [[1.0, 1.0, 0.0]]]),
55
+ "mask": torch.tensor([[[1.0, 1.0, 0.0]]]),
56
+ },
57
+ 0.47033,
58
+ ],
59
+ [ # shape: (2, 2, 3), (2, 1, 3)
60
+ {
61
+ "include_background": True,
62
+ "to_onehot_y": True,
63
+ "sigmoid": True,
64
+ "reduction": "none",
65
+ "smooth_nr": 1e-4,
66
+ "smooth_dr": 1e-4,
67
+ },
68
+ {
69
+ "input": torch.tensor([[[-1.0, 0.0, 1.0], [1.0, 0.0, -1.0]], [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]]),
70
+ "target": torch.tensor([[[1.0, 0.0, 0.0]], [[1.0, 1.0, 0.0]]]),
71
+ },
72
+ [[[0.296529], [0.415136]], [[0.599976], [0.428559]]],
73
+ ],
74
+ [ # shape: (2, 2, 3), (2, 1, 3)
75
+ {"include_background": True, "to_onehot_y": True, "softmax": True, "smooth_nr": 1e-4, "smooth_dr": 1e-4},
76
+ {
77
+ "input": torch.tensor([[[-1.0, 0.0, 1.0], [1.0, 0.0, -1.0]], [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]]),
78
+ "target": torch.tensor([[[1.0, 0.0, 0.0]], [[1.0, 1.0, 0.0]]]),
79
+ },
80
+ 0.383713,
81
+ ],
82
+ [ # shape: (2, 2, 3), (2, 1, 3)
83
+ {
84
+ "include_background": True,
85
+ "to_onehot_y": True,
86
+ "softmax": True,
87
+ "reduction": "sum",
88
+ "smooth_nr": 1e-4,
89
+ "smooth_dr": 1e-4,
90
+ },
91
+ {
92
+ "input": torch.tensor([[[-1.0, 0.0, 1.0], [1.0, 0.0, -1.0]], [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]]),
93
+ "target": torch.tensor([[[1.0, 0.0, 0.0]], [[1.0, 1.0, 0.0]]]),
94
+ },
95
+ 1.534853,
96
+ ],
97
+ [ # shape: (1, 1, 2, 2), (1, 1, 2, 2)
98
+ {"include_background": True, "sigmoid": True, "smooth_nr": 1e-6, "smooth_dr": 1e-6},
99
+ {"input": torch.tensor([[[[1.0, -1.0], [-1.0, 1.0]]]]), "target": torch.tensor([[[[1.0, 0.0], [1.0, 1.0]]]])},
100
+ 0.307576,
101
+ ],
102
+ [ # shape: (1, 1, 2, 2), (1, 1, 2, 2)
103
+ {"include_background": True, "sigmoid": True, "squared_pred": True, "smooth_nr": 1e-5, "smooth_dr": 1e-5},
104
+ {"input": torch.tensor([[[[1.0, -1.0], [-1.0, 1.0]]]]), "target": torch.tensor([[[[1.0, 0.0], [1.0, 1.0]]]])},
105
+ 0.178337,
106
+ ],
107
+ [ # shape: (1, 1, 2, 2), (1, 1, 2, 2)
108
+ {"include_background": True, "sigmoid": True, "jaccard": True, "smooth_nr": 1e-5, "smooth_dr": 1e-5},
109
+ {"input": torch.tensor([[[[1.0, -1.0], [-1.0, 1.0]]]]), "target": torch.tensor([[[[1.0, 0.0], [1.0, 1.0]]]])},
110
+ 0.470451,
111
+ ],
112
+ ]
113
+
114
+
115
+ class TestDiceLoss(unittest.TestCase):
116
+
117
+ @parameterized.expand(TEST_CASES)
118
+ def test_shape(self, input_param, input_data, expected_val):
119
+ result = MaskedDiceLoss(**input_param).forward(**input_data)
120
+ np.testing.assert_allclose(result.detach().cpu().numpy(), expected_val, rtol=1e-5)
121
+
122
+ def test_ill_shape(self):
123
+ loss = MaskedDiceLoss()
124
+ with self.assertRaisesRegex(AssertionError, ""):
125
+ loss.forward(torch.ones((1, 2, 3)), torch.ones((4, 5, 6)))
126
+
127
+ def test_ill_opts(self):
128
+ with self.assertRaisesRegex(ValueError, ""):
129
+ MaskedDiceLoss(sigmoid=True, softmax=True)
130
+ chn_input = torch.ones((1, 1, 3))
131
+ chn_target = torch.ones((1, 1, 3))
132
+ with self.assertRaisesRegex(ValueError, ""):
133
+ MaskedDiceLoss(reduction="unknown")(chn_input, chn_target)
134
+ with self.assertRaisesRegex(ValueError, ""):
135
+ MaskedDiceLoss(reduction=None)(chn_input, chn_target)
136
+
137
+ def test_input_warnings(self):
138
+ chn_input = torch.ones((1, 1, 3))
139
+ chn_target = torch.ones((1, 1, 3))
140
+ with self.assertWarns(Warning):
141
+ loss = MaskedDiceLoss(include_background=False)
142
+ loss.forward(chn_input, chn_target)
143
+ with self.assertWarns(Warning):
144
+ loss = MaskedDiceLoss(softmax=True)
145
+ loss.forward(chn_input, chn_target)
146
+ with self.assertWarns(Warning):
147
+ loss = MaskedDiceLoss(to_onehot_y=True)
148
+ loss.forward(chn_input, chn_target)
149
+
150
+
151
+ if __name__ == "__main__":
152
+ unittest.main()
@@ -0,0 +1,87 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+ from __future__ import annotations
12
+
13
+ import unittest
14
+
15
+ import numpy as np
16
+ import torch
17
+ from parameterized import parameterized
18
+
19
+ from monai.losses.dice import DiceFocalLoss, DiceLoss
20
+ from monai.losses.spatial_mask import MaskedLoss
21
+ from monai.utils import set_determinism
22
+ from tests.test_utils import test_script_save
23
+
24
+ device = "cuda" if torch.cuda.is_available() else "cpu"
25
+
26
+ TEST_CASES = [
27
+ [
28
+ {
29
+ "loss": DiceFocalLoss,
30
+ "weight": torch.tensor([1.0, 1.0, 2.0]),
31
+ "gamma": 0.1,
32
+ "lambda_focal": 0.5,
33
+ "include_background": True,
34
+ "to_onehot_y": True,
35
+ "reduction": "sum",
36
+ },
37
+ [17.1679, 15.5623],
38
+ ]
39
+ ]
40
+
41
+
42
+ class TestMaskedLoss(unittest.TestCase):
43
+ def setUp(self):
44
+ set_determinism(0)
45
+
46
+ def tearDown(self):
47
+ set_determinism(None)
48
+
49
+ @parameterized.expand(TEST_CASES)
50
+ def test_shape(self, input_param, expected_val):
51
+ size = [3, 3, 5, 5]
52
+ label = torch.randint(low=0, high=2, size=size)
53
+ label = torch.argmax(label, dim=1, keepdim=True)
54
+ pred = torch.randn(size)
55
+ result = MaskedLoss(**input_param)(pred, label, None)
56
+ out = result.detach().cpu().numpy()
57
+ self.assertTrue(np.allclose(out, expected_val[0]))
58
+
59
+ mask = torch.randint(low=0, high=2, size=label.shape)
60
+ result = MaskedLoss(**input_param)(pred, label, mask)
61
+ out = result.detach().cpu().numpy()
62
+ self.assertTrue(np.allclose(out, expected_val[1]))
63
+
64
+ def test_ill_opts(self):
65
+ with self.assertRaisesRegex(ValueError, ""):
66
+ MaskedLoss(loss=[])
67
+
68
+ dice_loss = DiceLoss(include_background=True, sigmoid=True, smooth_nr=1e-5, smooth_dr=1e-5)
69
+ with self.assertRaisesRegex(ValueError, ""):
70
+ masked = MaskedLoss(loss=dice_loss)
71
+ masked(input=torch.zeros((3, 1, 2, 2)), target=torch.zeros((3, 1, 2, 2)), mask=torch.zeros((3, 3, 2, 2)))
72
+ with self.assertRaisesRegex(ValueError, ""):
73
+ masked = MaskedLoss(loss=dice_loss)
74
+ masked(input=torch.zeros((3, 3, 2, 2)), target=torch.zeros((3, 2, 2, 2)), mask=torch.zeros((3, 3, 2, 2)))
75
+
76
+ def test_script(self):
77
+ input_param, expected_val = TEST_CASES[0]
78
+ size = [3, 3, 5, 5]
79
+ label = torch.randint(low=0, high=2, size=size)
80
+ label = torch.argmax(label, dim=1, keepdim=True)
81
+ pred = torch.randn(size)
82
+ loss = MaskedLoss(**input_param)
83
+ test_script_save(loss, pred, label)
84
+
85
+
86
+ if __name__ == "__main__":
87
+ unittest.main()
@@ -0,0 +1,86 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+ from __future__ import annotations
12
+
13
+ import unittest
14
+
15
+ import numpy as np
16
+ import torch
17
+ from parameterized import parameterized
18
+
19
+ from monai.losses import DiceLoss
20
+ from monai.losses.multi_scale import MultiScaleLoss
21
+ from tests.test_utils import test_script_save
22
+
23
+ dice_loss = DiceLoss(include_background=True, sigmoid=True, smooth_nr=1e-5, smooth_dr=1e-5)
24
+ device = "cuda" if torch.cuda.is_available() else "cpu"
25
+
26
+ TEST_CASES = [
27
+ [
28
+ {"loss": dice_loss, "scales": None, "kernel": "gaussian"},
29
+ {
30
+ "y_pred": torch.tensor([[[[1.0, -1.0], [-1.0, 1.0]]]], device=device),
31
+ "y_true": torch.tensor([[[[1.0, 0.0], [1.0, 1.0]]]], device=device),
32
+ },
33
+ 0.307576,
34
+ ],
35
+ [
36
+ {"loss": dice_loss, "scales": [0, 1], "kernel": "gaussian"},
37
+ {
38
+ "y_pred": torch.tensor([[[[1.0, -1.0], [-1.0, 1.0]]]], device=device),
39
+ "y_true": torch.tensor([[[[1.0, 0.0], [1.0, 1.0]]]], device=device),
40
+ },
41
+ 0.463116,
42
+ ],
43
+ [
44
+ {"loss": dice_loss, "scales": [0, 1, 2], "kernel": "cauchy"},
45
+ {
46
+ "y_pred": torch.tensor([[[[[1.0, -1.0], [-1.0, 1.0]]]]], device=device),
47
+ "y_true": torch.tensor([[[[[1.0, 0.0], [1.0, 1.0]]]]], device=device),
48
+ },
49
+ 0.715228,
50
+ ],
51
+ ]
52
+
53
+
54
+ class TestMultiScale(unittest.TestCase):
55
+ @parameterized.expand(TEST_CASES)
56
+ def test_shape(self, input_param, input_data, expected_val):
57
+ result = MultiScaleLoss(**input_param).forward(**input_data)
58
+ np.testing.assert_allclose(result.detach().cpu().numpy(), expected_val, rtol=1e-5)
59
+
60
+ @parameterized.expand(
61
+ [
62
+ ({"loss": dice_loss, "kernel": "none"}, None, None), # kernel_none
63
+ ({"loss": dice_loss, "scales": [-1]}, torch.ones((1, 1, 3)), torch.ones((1, 1, 3))), # scales_negative
64
+ (
65
+ {"loss": dice_loss, "scales": [-1], "reduction": "none"},
66
+ torch.ones((1, 1, 3)),
67
+ torch.ones((1, 1, 3)),
68
+ ), # scales_negative_reduction_none
69
+ ]
70
+ )
71
+ def test_ill_opts(self, kwargs, input, target):
72
+ if input is None and target is None:
73
+ with self.assertRaisesRegex(ValueError, ""):
74
+ MultiScaleLoss(**kwargs)
75
+ else:
76
+ with self.assertRaisesRegex(ValueError, ""):
77
+ MultiScaleLoss(**kwargs)(input, target)
78
+
79
+ def test_script(self):
80
+ input_param, input_data, expected_val = TEST_CASES[0]
81
+ loss = MultiScaleLoss(**input_param)
82
+ test_script_save(loss, input_data["y_pred"], input_data["y_true"])
83
+
84
+
85
+ if __name__ == "__main__":
86
+ unittest.main()
@@ -0,0 +1,167 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ import torch
18
+ from parameterized import parameterized
19
+
20
+ from monai.losses import NACLLoss
21
+
22
+ inputs = torch.tensor(
23
+ [
24
+ [
25
+ [
26
+ [0.1498, 0.1158, 0.3996, 0.3730],
27
+ [0.2155, 0.1585, 0.8541, 0.8579],
28
+ [0.6640, 0.2424, 0.0774, 0.0324],
29
+ [0.0580, 0.2180, 0.3447, 0.8722],
30
+ ],
31
+ [
32
+ [0.3908, 0.9366, 0.1779, 0.1003],
33
+ [0.9630, 0.6118, 0.4405, 0.7916],
34
+ [0.5782, 0.9515, 0.4088, 0.3946],
35
+ [0.7860, 0.3910, 0.0324, 0.9568],
36
+ ],
37
+ [
38
+ [0.0759, 0.0238, 0.5570, 0.1691],
39
+ [0.2703, 0.7722, 0.1611, 0.6431],
40
+ [0.8051, 0.6596, 0.4121, 0.1125],
41
+ [0.5283, 0.6746, 0.5528, 0.7913],
42
+ ],
43
+ ]
44
+ ]
45
+ )
46
+ targets = torch.tensor([[[1, 1, 1, 1], [1, 1, 1, 0], [0, 0, 1, 0], [0, 1, 0, 0]]])
47
+
48
+ TEST_CASES = [
49
+ [{"classes": 3, "dim": 2}, {"inputs": inputs, "targets": targets}, 1.1442],
50
+ [{"classes": 3, "dim": 2}, {"inputs": inputs.repeat(4, 1, 1, 1), "targets": targets.repeat(4, 1, 1)}, 1.1442],
51
+ [{"classes": 3, "dim": 2, "kernel_ops": "gaussian"}, {"inputs": inputs, "targets": targets}, 1.1433],
52
+ [{"classes": 3, "dim": 2, "kernel_ops": "gaussian", "sigma": 0.5}, {"inputs": inputs, "targets": targets}, 1.1469],
53
+ [{"classes": 3, "dim": 2, "distance_type": "l2"}, {"inputs": inputs, "targets": targets}, 1.1269],
54
+ [{"classes": 3, "dim": 2, "alpha": 0.2}, {"inputs": inputs, "targets": targets}, 1.1790],
55
+ [
56
+ {"classes": 3, "dim": 3, "kernel_ops": "gaussian"},
57
+ {
58
+ "inputs": torch.tensor(
59
+ [
60
+ [
61
+ [
62
+ [
63
+ [0.5977, 0.2767, 0.0591, 0.1675],
64
+ [0.4835, 0.3778, 0.8406, 0.3065],
65
+ [0.6047, 0.2860, 0.9742, 0.2013],
66
+ [0.9128, 0.8368, 0.6711, 0.4384],
67
+ ],
68
+ [
69
+ [0.9797, 0.1863, 0.5584, 0.6652],
70
+ [0.2272, 0.2004, 0.7914, 0.4224],
71
+ [0.5097, 0.8818, 0.2581, 0.3495],
72
+ [0.1054, 0.5483, 0.3732, 0.3587],
73
+ ],
74
+ [
75
+ [0.3060, 0.7066, 0.7922, 0.4689],
76
+ [0.1733, 0.8902, 0.6704, 0.2037],
77
+ [0.8656, 0.5561, 0.2701, 0.0092],
78
+ [0.1866, 0.7714, 0.6424, 0.9791],
79
+ ],
80
+ [
81
+ [0.5067, 0.3829, 0.6156, 0.8985],
82
+ [0.5192, 0.8347, 0.2098, 0.2260],
83
+ [0.8887, 0.3944, 0.6400, 0.5345],
84
+ [0.1207, 0.3763, 0.5282, 0.7741],
85
+ ],
86
+ ],
87
+ [
88
+ [
89
+ [0.8499, 0.4759, 0.1964, 0.5701],
90
+ [0.3190, 0.1238, 0.2368, 0.9517],
91
+ [0.0797, 0.6185, 0.0135, 0.8672],
92
+ [0.4116, 0.1683, 0.1355, 0.0545],
93
+ ],
94
+ [
95
+ [0.7533, 0.2658, 0.5955, 0.4498],
96
+ [0.9500, 0.2317, 0.2825, 0.9763],
97
+ [0.1493, 0.1558, 0.3743, 0.8723],
98
+ [0.1723, 0.7980, 0.8816, 0.0133],
99
+ ],
100
+ [
101
+ [0.8426, 0.2666, 0.2077, 0.3161],
102
+ [0.1725, 0.8414, 0.1515, 0.2825],
103
+ [0.4882, 0.5159, 0.4120, 0.1585],
104
+ [0.2551, 0.9073, 0.7691, 0.9898],
105
+ ],
106
+ [
107
+ [0.4633, 0.8717, 0.8537, 0.2899],
108
+ [0.3693, 0.7953, 0.1183, 0.4596],
109
+ [0.0087, 0.7925, 0.0989, 0.8385],
110
+ [0.8261, 0.6920, 0.7069, 0.4464],
111
+ ],
112
+ ],
113
+ [
114
+ [
115
+ [0.0110, 0.1608, 0.4814, 0.6317],
116
+ [0.0194, 0.9669, 0.3259, 0.0028],
117
+ [0.5674, 0.8286, 0.0306, 0.5309],
118
+ [0.3973, 0.8183, 0.0238, 0.1934],
119
+ ],
120
+ [
121
+ [0.8947, 0.6629, 0.9439, 0.8905],
122
+ [0.0072, 0.1697, 0.4634, 0.0201],
123
+ [0.7184, 0.2424, 0.0820, 0.7504],
124
+ [0.3937, 0.1424, 0.4463, 0.5779],
125
+ ],
126
+ [
127
+ [0.4123, 0.6227, 0.0523, 0.8826],
128
+ [0.0051, 0.0353, 0.3662, 0.7697],
129
+ [0.4867, 0.8986, 0.2510, 0.5316],
130
+ [0.1856, 0.2634, 0.9140, 0.9725],
131
+ ],
132
+ [
133
+ [0.2041, 0.4248, 0.2371, 0.7256],
134
+ [0.2168, 0.5380, 0.4538, 0.7007],
135
+ [0.9013, 0.2623, 0.0739, 0.2998],
136
+ [0.1366, 0.5590, 0.2952, 0.4592],
137
+ ],
138
+ ],
139
+ ]
140
+ ]
141
+ ),
142
+ "targets": torch.tensor(
143
+ [
144
+ [
145
+ [[0, 1, 0, 1], [1, 2, 1, 0], [2, 1, 1, 1], [1, 1, 0, 1]],
146
+ [[2, 1, 0, 2], [1, 2, 0, 2], [1, 0, 1, 1], [1, 1, 0, 0]],
147
+ [[1, 0, 2, 1], [0, 2, 2, 1], [1, 0, 1, 1], [0, 0, 2, 1]],
148
+ [[2, 1, 1, 0], [1, 0, 0, 2], [1, 0, 2, 1], [2, 1, 0, 1]],
149
+ ]
150
+ ]
151
+ ),
152
+ },
153
+ 1.15035,
154
+ ],
155
+ ]
156
+
157
+
158
+ class TestNACLLoss(unittest.TestCase):
159
+ @parameterized.expand(TEST_CASES)
160
+ def test_result(self, input_param, input_data, expected_val):
161
+ loss = NACLLoss(**input_param)
162
+ result = loss(**input_data)
163
+ np.testing.assert_allclose(result.detach().cpu().numpy(), expected_val, atol=1e-4, rtol=1e-4)
164
+
165
+
166
+ if __name__ == "__main__":
167
+ unittest.main()
@@ -0,0 +1,122 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import torch
17
+ from parameterized import parameterized
18
+
19
+ from monai.losses import PerceptualLoss
20
+ from monai.utils import optional_import
21
+ from tests.test_utils import SkipIfBeforePyTorchVersion, assert_allclose, skip_if_downloading_fails, skip_if_quick
22
+
23
+ _, has_torchvision = optional_import("torchvision")
24
+ TEST_CASES = [
25
+ [{"spatial_dims": 2, "network_type": "squeeze"}, (2, 1, 64, 64), (2, 1, 64, 64)],
26
+ [
27
+ {"spatial_dims": 3, "network_type": "squeeze", "is_fake_3d": True, "fake_3d_ratio": 0.1},
28
+ (2, 1, 64, 64, 64),
29
+ (2, 1, 64, 64, 64),
30
+ ],
31
+ [{"spatial_dims": 2, "network_type": "radimagenet_resnet50"}, (2, 1, 64, 64), (2, 1, 64, 64)],
32
+ [{"spatial_dims": 2, "network_type": "radimagenet_resnet50"}, (2, 3, 64, 64), (2, 3, 64, 64)],
33
+ [
34
+ {"spatial_dims": 3, "network_type": "radimagenet_resnet50", "is_fake_3d": True, "fake_3d_ratio": 0.1},
35
+ (2, 1, 64, 64, 64),
36
+ (2, 1, 64, 64, 64),
37
+ ],
38
+ [
39
+ {"spatial_dims": 3, "network_type": "medicalnet_resnet10_23datasets", "is_fake_3d": False},
40
+ (2, 1, 64, 64, 64),
41
+ (2, 1, 64, 64, 64),
42
+ ],
43
+ [
44
+ {"spatial_dims": 3, "network_type": "medicalnet_resnet10_23datasets", "is_fake_3d": False},
45
+ (2, 6, 64, 64, 64),
46
+ (2, 6, 64, 64, 64),
47
+ ],
48
+ [
49
+ {
50
+ "spatial_dims": 3,
51
+ "network_type": "medicalnet_resnet10_23datasets",
52
+ "is_fake_3d": False,
53
+ "channel_wise": True,
54
+ },
55
+ (2, 6, 64, 64, 64),
56
+ (2, 6, 64, 64, 64),
57
+ ],
58
+ [
59
+ {"spatial_dims": 3, "network_type": "medicalnet_resnet50_23datasets", "is_fake_3d": False},
60
+ (2, 1, 64, 64, 64),
61
+ (2, 1, 64, 64, 64),
62
+ ],
63
+ [
64
+ {"spatial_dims": 3, "network_type": "medicalnet_resnet50_23datasets", "is_fake_3d": False},
65
+ (2, 6, 64, 64, 64),
66
+ (2, 6, 64, 64, 64),
67
+ ],
68
+ [
69
+ {"spatial_dims": 3, "network_type": "resnet50", "is_fake_3d": True, "pretrained": True, "fake_3d_ratio": 0.2},
70
+ (2, 1, 64, 64, 64),
71
+ (2, 1, 64, 64, 64),
72
+ ],
73
+ ]
74
+
75
+
76
+ @SkipIfBeforePyTorchVersion((1, 11))
77
+ @unittest.skipUnless(has_torchvision, "Requires torchvision")
78
+ @skip_if_quick
79
+ class TestPerceptualLoss(unittest.TestCase):
80
+ @parameterized.expand(TEST_CASES)
81
+ def test_shape(self, input_param, input_shape, target_shape):
82
+ with skip_if_downloading_fails():
83
+ loss = PerceptualLoss(**input_param)
84
+ result = loss(torch.randn(input_shape), torch.randn(target_shape))
85
+
86
+ if "channel_wise" in input_param.keys() and input_param["channel_wise"]:
87
+ self.assertEqual(result.shape, torch.Size([input_shape[1]]))
88
+ else:
89
+ self.assertEqual(result.shape, torch.Size([]))
90
+
91
+ @parameterized.expand(TEST_CASES)
92
+ def test_identical_input(self, input_param, input_shape, target_shape):
93
+ with skip_if_downloading_fails():
94
+ loss = PerceptualLoss(**input_param)
95
+ tensor = torch.randn(input_shape)
96
+ result = loss(tensor, tensor)
97
+
98
+ if "channel_wise" in input_param.keys() and input_param["channel_wise"]:
99
+ assert_allclose(result, torch.Tensor([0.0] * input_shape[1]))
100
+ else:
101
+ self.assertEqual(result, torch.Tensor([0.0]))
102
+
103
+ def test_different_shape(self):
104
+ with skip_if_downloading_fails():
105
+ loss = PerceptualLoss(spatial_dims=2, network_type="squeeze")
106
+ tensor = torch.randn(2, 1, 64, 64)
107
+ target = torch.randn(2, 1, 32, 32)
108
+ with self.assertRaises(ValueError):
109
+ loss(tensor, target)
110
+
111
+ def test_1d(self):
112
+ with self.assertRaises(NotImplementedError):
113
+ PerceptualLoss(spatial_dims=1)
114
+
115
+ @parameterized.expand(["medicalnet_resnet10_23datasets", "medicalnet_resnet50_23datasets"])
116
+ def test_medicalnet_on_2d_data(self, network_type):
117
+ with self.assertRaises(ValueError):
118
+ PerceptualLoss(spatial_dims=2, network_type=network_type)
119
+
120
+
121
+ if __name__ == "__main__":
122
+ unittest.main()