monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl

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Files changed (776) hide show
  1. monai/__init__.py +1 -1
  2. monai/_version.py +3 -3
  3. monai/apps/auto3dseg/transforms.py +1 -4
  4. monai/data/utils.py +6 -13
  5. monai/inferers/utils.py +1 -2
  6. monai/losses/dice.py +2 -14
  7. monai/losses/ds_loss.py +1 -3
  8. monai/networks/layers/simplelayers.py +2 -14
  9. monai/networks/utils.py +4 -16
  10. monai/transforms/compose.py +28 -11
  11. monai/transforms/croppad/array.py +1 -6
  12. monai/transforms/io/array.py +0 -1
  13. monai/transforms/transform.py +15 -6
  14. monai/transforms/utils.py +1 -2
  15. monai/utils/tf32.py +0 -10
  16. monai/visualize/class_activation_maps.py +5 -8
  17. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
  18. monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
  19. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
  20. tests/apps/__init__.py +10 -0
  21. tests/apps/deepedit/__init__.py +10 -0
  22. tests/apps/deepedit/test_deepedit_transforms.py +314 -0
  23. tests/apps/deepgrow/__init__.py +10 -0
  24. tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
  25. tests/apps/deepgrow/transforms/__init__.py +10 -0
  26. tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
  27. tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
  28. tests/apps/detection/__init__.py +10 -0
  29. tests/apps/detection/metrics/__init__.py +10 -0
  30. tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
  31. tests/apps/detection/networks/__init__.py +10 -0
  32. tests/apps/detection/networks/test_retinanet.py +210 -0
  33. tests/apps/detection/networks/test_retinanet_detector.py +203 -0
  34. tests/apps/detection/test_box_transform.py +370 -0
  35. tests/apps/detection/utils/__init__.py +10 -0
  36. tests/apps/detection/utils/test_anchor_box.py +88 -0
  37. tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
  38. tests/apps/detection/utils/test_box_coder.py +43 -0
  39. tests/apps/detection/utils/test_detector_boxselector.py +67 -0
  40. tests/apps/detection/utils/test_detector_utils.py +96 -0
  41. tests/apps/detection/utils/test_hardnegsampler.py +54 -0
  42. tests/apps/nuclick/__init__.py +10 -0
  43. tests/apps/nuclick/test_nuclick_transforms.py +259 -0
  44. tests/apps/pathology/__init__.py +10 -0
  45. tests/apps/pathology/handlers/__init__.py +10 -0
  46. tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
  47. tests/apps/pathology/test_lesion_froc.py +333 -0
  48. tests/apps/pathology/test_pathology_prob_nms.py +55 -0
  49. tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
  50. tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
  51. tests/apps/pathology/transforms/__init__.py +10 -0
  52. tests/apps/pathology/transforms/post/__init__.py +10 -0
  53. tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
  54. tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
  55. tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
  56. tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
  57. tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
  58. tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
  59. tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
  60. tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
  61. tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
  62. tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
  63. tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
  64. tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
  65. tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
  66. tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
  67. tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
  68. tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
  69. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
  70. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
  71. tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
  72. tests/apps/pathology/transforms/post/test_watershed.py +60 -0
  73. tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
  74. tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
  75. tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
  76. tests/apps/reconstruction/__init__.py +10 -0
  77. tests/apps/reconstruction/nets/__init__.py +10 -0
  78. tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
  79. tests/apps/reconstruction/test_complex_utils.py +77 -0
  80. tests/apps/reconstruction/test_fastmri_reader.py +82 -0
  81. tests/apps/reconstruction/test_mri_utils.py +37 -0
  82. tests/apps/reconstruction/transforms/__init__.py +10 -0
  83. tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
  84. tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
  85. tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
  86. tests/apps/test_auto3dseg_bundlegen.py +156 -0
  87. tests/apps/test_check_hash.py +53 -0
  88. tests/apps/test_cross_validation.py +74 -0
  89. tests/apps/test_decathlondataset.py +93 -0
  90. tests/apps/test_download_and_extract.py +70 -0
  91. tests/apps/test_download_url_yandex.py +45 -0
  92. tests/apps/test_mednistdataset.py +72 -0
  93. tests/apps/test_mmar_download.py +154 -0
  94. tests/apps/test_tciadataset.py +123 -0
  95. tests/apps/vista3d/__init__.py +10 -0
  96. tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
  97. tests/apps/vista3d/test_vista3d_sampler.py +100 -0
  98. tests/apps/vista3d/test_vista3d_transforms.py +94 -0
  99. tests/bundle/__init__.py +10 -0
  100. tests/bundle/test_bundle_ckpt_export.py +107 -0
  101. tests/bundle/test_bundle_download.py +435 -0
  102. tests/bundle/test_bundle_get_data.py +94 -0
  103. tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
  104. tests/bundle/test_bundle_trt_export.py +147 -0
  105. tests/bundle/test_bundle_utils.py +149 -0
  106. tests/bundle/test_bundle_verify_metadata.py +66 -0
  107. tests/bundle/test_bundle_verify_net.py +76 -0
  108. tests/bundle/test_bundle_workflow.py +272 -0
  109. tests/bundle/test_component_locator.py +38 -0
  110. tests/bundle/test_config_item.py +138 -0
  111. tests/bundle/test_config_parser.py +392 -0
  112. tests/bundle/test_reference_resolver.py +114 -0
  113. tests/config/__init__.py +10 -0
  114. tests/config/test_cv2_dist.py +53 -0
  115. tests/engines/__init__.py +10 -0
  116. tests/engines/test_ensemble_evaluator.py +94 -0
  117. tests/engines/test_prepare_batch_default.py +76 -0
  118. tests/engines/test_prepare_batch_default_dist.py +76 -0
  119. tests/engines/test_prepare_batch_diffusion.py +104 -0
  120. tests/engines/test_prepare_batch_extra_input.py +80 -0
  121. tests/fl/__init__.py +10 -0
  122. tests/fl/monai_algo/__init__.py +10 -0
  123. tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
  124. tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
  125. tests/fl/test_fl_monai_algo_stats.py +81 -0
  126. tests/fl/utils/__init__.py +10 -0
  127. tests/fl/utils/test_fl_exchange_object.py +63 -0
  128. tests/handlers/__init__.py +10 -0
  129. tests/handlers/test_handler_checkpoint_loader.py +182 -0
  130. tests/handlers/test_handler_checkpoint_saver.py +233 -0
  131. tests/handlers/test_handler_classification_saver.py +64 -0
  132. tests/handlers/test_handler_classification_saver_dist.py +77 -0
  133. tests/handlers/test_handler_clearml_image.py +65 -0
  134. tests/handlers/test_handler_clearml_stats.py +65 -0
  135. tests/handlers/test_handler_confusion_matrix.py +104 -0
  136. tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
  137. tests/handlers/test_handler_decollate_batch.py +66 -0
  138. tests/handlers/test_handler_early_stop.py +68 -0
  139. tests/handlers/test_handler_garbage_collector.py +73 -0
  140. tests/handlers/test_handler_hausdorff_distance.py +111 -0
  141. tests/handlers/test_handler_ignite_metric.py +191 -0
  142. tests/handlers/test_handler_lr_scheduler.py +94 -0
  143. tests/handlers/test_handler_mean_dice.py +98 -0
  144. tests/handlers/test_handler_mean_iou.py +76 -0
  145. tests/handlers/test_handler_metrics_reloaded.py +149 -0
  146. tests/handlers/test_handler_metrics_saver.py +89 -0
  147. tests/handlers/test_handler_metrics_saver_dist.py +120 -0
  148. tests/handlers/test_handler_mlflow.py +296 -0
  149. tests/handlers/test_handler_nvtx.py +93 -0
  150. tests/handlers/test_handler_panoptic_quality.py +89 -0
  151. tests/handlers/test_handler_parameter_scheduler.py +136 -0
  152. tests/handlers/test_handler_post_processing.py +74 -0
  153. tests/handlers/test_handler_prob_map_producer.py +111 -0
  154. tests/handlers/test_handler_regression_metrics.py +160 -0
  155. tests/handlers/test_handler_regression_metrics_dist.py +245 -0
  156. tests/handlers/test_handler_rocauc.py +48 -0
  157. tests/handlers/test_handler_rocauc_dist.py +54 -0
  158. tests/handlers/test_handler_stats.py +281 -0
  159. tests/handlers/test_handler_surface_distance.py +113 -0
  160. tests/handlers/test_handler_tb_image.py +61 -0
  161. tests/handlers/test_handler_tb_stats.py +166 -0
  162. tests/handlers/test_handler_validation.py +59 -0
  163. tests/handlers/test_trt_compile.py +145 -0
  164. tests/handlers/test_write_metrics_reports.py +68 -0
  165. tests/inferers/__init__.py +10 -0
  166. tests/inferers/test_avg_merger.py +179 -0
  167. tests/inferers/test_controlnet_inferers.py +1310 -0
  168. tests/inferers/test_diffusion_inferer.py +236 -0
  169. tests/inferers/test_latent_diffusion_inferer.py +824 -0
  170. tests/inferers/test_patch_inferer.py +309 -0
  171. tests/inferers/test_saliency_inferer.py +55 -0
  172. tests/inferers/test_slice_inferer.py +57 -0
  173. tests/inferers/test_sliding_window_inference.py +377 -0
  174. tests/inferers/test_sliding_window_splitter.py +284 -0
  175. tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
  176. tests/inferers/test_zarr_avg_merger.py +326 -0
  177. tests/integration/__init__.py +10 -0
  178. tests/integration/test_auto3dseg_ensemble.py +211 -0
  179. tests/integration/test_auto3dseg_hpo.py +189 -0
  180. tests/integration/test_deepedit_interaction.py +122 -0
  181. tests/integration/test_downsample_block.py +50 -0
  182. tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
  183. tests/integration/test_integration_autorunner.py +201 -0
  184. tests/integration/test_integration_bundle_run.py +240 -0
  185. tests/integration/test_integration_classification_2d.py +282 -0
  186. tests/integration/test_integration_determinism.py +95 -0
  187. tests/integration/test_integration_fast_train.py +231 -0
  188. tests/integration/test_integration_gpu_customization.py +159 -0
  189. tests/integration/test_integration_lazy_samples.py +219 -0
  190. tests/integration/test_integration_nnunetv2_runner.py +96 -0
  191. tests/integration/test_integration_segmentation_3d.py +304 -0
  192. tests/integration/test_integration_sliding_window.py +100 -0
  193. tests/integration/test_integration_stn.py +133 -0
  194. tests/integration/test_integration_unet_2d.py +67 -0
  195. tests/integration/test_integration_workers.py +61 -0
  196. tests/integration/test_integration_workflows.py +365 -0
  197. tests/integration/test_integration_workflows_adversarial.py +173 -0
  198. tests/integration/test_integration_workflows_gan.py +158 -0
  199. tests/integration/test_loader_semaphore.py +48 -0
  200. tests/integration/test_mapping_filed.py +122 -0
  201. tests/integration/test_meta_affine.py +183 -0
  202. tests/integration/test_metatensor_integration.py +114 -0
  203. tests/integration/test_module_list.py +76 -0
  204. tests/integration/test_one_of.py +283 -0
  205. tests/integration/test_pad_collation.py +124 -0
  206. tests/integration/test_reg_loss_integration.py +107 -0
  207. tests/integration/test_retinanet_predict_utils.py +154 -0
  208. tests/integration/test_seg_loss_integration.py +159 -0
  209. tests/integration/test_spatial_combine_transforms.py +185 -0
  210. tests/integration/test_testtimeaugmentation.py +186 -0
  211. tests/integration/test_vis_gradbased.py +69 -0
  212. tests/integration/test_vista3d_utils.py +159 -0
  213. tests/losses/__init__.py +10 -0
  214. tests/losses/deform/__init__.py +10 -0
  215. tests/losses/deform/test_bending_energy.py +88 -0
  216. tests/losses/deform/test_diffusion_loss.py +117 -0
  217. tests/losses/image_dissimilarity/__init__.py +10 -0
  218. tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
  219. tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
  220. tests/losses/test_adversarial_loss.py +94 -0
  221. tests/losses/test_barlow_twins_loss.py +109 -0
  222. tests/losses/test_cldice_loss.py +51 -0
  223. tests/losses/test_contrastive_loss.py +86 -0
  224. tests/losses/test_dice_ce_loss.py +123 -0
  225. tests/losses/test_dice_focal_loss.py +124 -0
  226. tests/losses/test_dice_loss.py +227 -0
  227. tests/losses/test_ds_loss.py +189 -0
  228. tests/losses/test_focal_loss.py +379 -0
  229. tests/losses/test_generalized_dice_focal_loss.py +85 -0
  230. tests/losses/test_generalized_dice_loss.py +221 -0
  231. tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
  232. tests/losses/test_giou_loss.py +62 -0
  233. tests/losses/test_hausdorff_loss.py +264 -0
  234. tests/losses/test_masked_dice_loss.py +152 -0
  235. tests/losses/test_masked_loss.py +87 -0
  236. tests/losses/test_multi_scale.py +86 -0
  237. tests/losses/test_nacl_loss.py +167 -0
  238. tests/losses/test_perceptual_loss.py +122 -0
  239. tests/losses/test_spectral_loss.py +86 -0
  240. tests/losses/test_ssim_loss.py +59 -0
  241. tests/losses/test_sure_loss.py +72 -0
  242. tests/losses/test_tversky_loss.py +198 -0
  243. tests/losses/test_unified_focal_loss.py +66 -0
  244. tests/metrics/__init__.py +10 -0
  245. tests/metrics/test_compute_confusion_matrix.py +294 -0
  246. tests/metrics/test_compute_f_beta.py +80 -0
  247. tests/metrics/test_compute_fid_metric.py +40 -0
  248. tests/metrics/test_compute_froc.py +143 -0
  249. tests/metrics/test_compute_generalized_dice.py +240 -0
  250. tests/metrics/test_compute_meandice.py +306 -0
  251. tests/metrics/test_compute_meaniou.py +223 -0
  252. tests/metrics/test_compute_mmd_metric.py +56 -0
  253. tests/metrics/test_compute_multiscalessim_metric.py +83 -0
  254. tests/metrics/test_compute_panoptic_quality.py +113 -0
  255. tests/metrics/test_compute_regression_metrics.py +196 -0
  256. tests/metrics/test_compute_roc_auc.py +155 -0
  257. tests/metrics/test_compute_variance.py +147 -0
  258. tests/metrics/test_cumulative.py +63 -0
  259. tests/metrics/test_cumulative_average.py +74 -0
  260. tests/metrics/test_cumulative_average_dist.py +48 -0
  261. tests/metrics/test_hausdorff_distance.py +209 -0
  262. tests/metrics/test_label_quality_score.py +134 -0
  263. tests/metrics/test_loss_metric.py +57 -0
  264. tests/metrics/test_metrics_reloaded.py +96 -0
  265. tests/metrics/test_ssim_metric.py +78 -0
  266. tests/metrics/test_surface_dice.py +416 -0
  267. tests/metrics/test_surface_distance.py +186 -0
  268. tests/networks/__init__.py +10 -0
  269. tests/networks/blocks/__init__.py +10 -0
  270. tests/networks/blocks/dints_block/__init__.py +10 -0
  271. tests/networks/blocks/dints_block/test_acn_block.py +41 -0
  272. tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
  273. tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
  274. tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
  275. tests/networks/blocks/test_adn.py +86 -0
  276. tests/networks/blocks/test_convolutions.py +156 -0
  277. tests/networks/blocks/test_crf_cpu.py +513 -0
  278. tests/networks/blocks/test_crf_cuda.py +528 -0
  279. tests/networks/blocks/test_crossattention.py +185 -0
  280. tests/networks/blocks/test_denseblock.py +105 -0
  281. tests/networks/blocks/test_dynunet_block.py +116 -0
  282. tests/networks/blocks/test_fpn_block.py +88 -0
  283. tests/networks/blocks/test_localnet_block.py +121 -0
  284. tests/networks/blocks/test_mlp.py +78 -0
  285. tests/networks/blocks/test_patchembedding.py +212 -0
  286. tests/networks/blocks/test_regunet_block.py +103 -0
  287. tests/networks/blocks/test_se_block.py +85 -0
  288. tests/networks/blocks/test_se_blocks.py +78 -0
  289. tests/networks/blocks/test_segresnet_block.py +57 -0
  290. tests/networks/blocks/test_selfattention.py +232 -0
  291. tests/networks/blocks/test_simple_aspp.py +87 -0
  292. tests/networks/blocks/test_spatialattention.py +55 -0
  293. tests/networks/blocks/test_subpixel_upsample.py +87 -0
  294. tests/networks/blocks/test_text_encoding.py +49 -0
  295. tests/networks/blocks/test_transformerblock.py +90 -0
  296. tests/networks/blocks/test_unetr_block.py +158 -0
  297. tests/networks/blocks/test_upsample_block.py +134 -0
  298. tests/networks/blocks/warp/__init__.py +10 -0
  299. tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
  300. tests/networks/blocks/warp/test_warp.py +250 -0
  301. tests/networks/layers/__init__.py +10 -0
  302. tests/networks/layers/filtering/__init__.py +10 -0
  303. tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
  304. tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
  305. tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
  306. tests/networks/layers/filtering/test_phl_cpu.py +259 -0
  307. tests/networks/layers/filtering/test_phl_cuda.py +167 -0
  308. tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
  309. tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
  310. tests/networks/layers/test_affine_transform.py +385 -0
  311. tests/networks/layers/test_apply_filter.py +89 -0
  312. tests/networks/layers/test_channel_pad.py +51 -0
  313. tests/networks/layers/test_conjugate_gradient.py +56 -0
  314. tests/networks/layers/test_drop_path.py +46 -0
  315. tests/networks/layers/test_gaussian.py +317 -0
  316. tests/networks/layers/test_gaussian_filter.py +206 -0
  317. tests/networks/layers/test_get_layers.py +65 -0
  318. tests/networks/layers/test_gmm.py +314 -0
  319. tests/networks/layers/test_grid_pull.py +93 -0
  320. tests/networks/layers/test_hilbert_transform.py +131 -0
  321. tests/networks/layers/test_lltm.py +62 -0
  322. tests/networks/layers/test_median_filter.py +52 -0
  323. tests/networks/layers/test_polyval.py +55 -0
  324. tests/networks/layers/test_preset_filters.py +136 -0
  325. tests/networks/layers/test_savitzky_golay_filter.py +141 -0
  326. tests/networks/layers/test_separable_filter.py +87 -0
  327. tests/networks/layers/test_skip_connection.py +48 -0
  328. tests/networks/layers/test_vector_quantizer.py +89 -0
  329. tests/networks/layers/test_weight_init.py +50 -0
  330. tests/networks/nets/__init__.py +10 -0
  331. tests/networks/nets/dints/__init__.py +10 -0
  332. tests/networks/nets/dints/test_dints_cell.py +110 -0
  333. tests/networks/nets/dints/test_dints_mixop.py +84 -0
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  681. tests/transforms/test_std_shift_intensityd.py +74 -0
  682. tests/transforms/test_threshold_intensity.py +38 -0
  683. tests/transforms/test_threshold_intensityd.py +58 -0
  684. tests/transforms/test_to_contiguous.py +47 -0
  685. tests/transforms/test_to_cupy.py +112 -0
  686. tests/transforms/test_to_cupyd.py +76 -0
  687. tests/transforms/test_to_device.py +42 -0
  688. tests/transforms/test_to_deviced.py +37 -0
  689. tests/transforms/test_to_numpy.py +85 -0
  690. tests/transforms/test_to_numpyd.py +68 -0
  691. tests/transforms/test_to_pil.py +52 -0
  692. tests/transforms/test_to_pild.py +50 -0
  693. tests/transforms/test_to_tensor.py +60 -0
  694. tests/transforms/test_to_tensord.py +71 -0
  695. tests/transforms/test_torchvision.py +66 -0
  696. tests/transforms/test_torchvisiond.py +63 -0
  697. tests/transforms/test_transform.py +62 -0
  698. tests/transforms/test_transpose.py +41 -0
  699. tests/transforms/test_transposed.py +52 -0
  700. tests/transforms/test_ultrasound_confidence_map_transform.py +711 -0
  701. tests/transforms/test_utils_pytorch_numpy_unification.py +90 -0
  702. tests/transforms/test_vote_ensemble.py +84 -0
  703. tests/transforms/test_vote_ensembled.py +107 -0
  704. tests/transforms/test_with_allow_missing_keys.py +76 -0
  705. tests/transforms/test_zoom.py +120 -0
  706. tests/transforms/test_zoomd.py +94 -0
  707. tests/transforms/transform/__init__.py +10 -0
  708. tests/transforms/transform/test_randomizable.py +52 -0
  709. tests/transforms/transform/test_randomizable_transform_type.py +37 -0
  710. tests/transforms/utility/__init__.py +10 -0
  711. tests/transforms/utility/test_apply_transform_to_points.py +81 -0
  712. tests/transforms/utility/test_apply_transform_to_pointsd.py +185 -0
  713. tests/transforms/utility/test_identity.py +29 -0
  714. tests/transforms/utility/test_identityd.py +30 -0
  715. tests/transforms/utility/test_lambda.py +71 -0
  716. tests/transforms/utility/test_lambdad.py +83 -0
  717. tests/transforms/utility/test_rand_lambda.py +87 -0
  718. tests/transforms/utility/test_rand_lambdad.py +77 -0
  719. tests/transforms/utility/test_simulatedelay.py +36 -0
  720. tests/transforms/utility/test_simulatedelayd.py +36 -0
  721. tests/transforms/utility/test_splitdim.py +52 -0
  722. tests/transforms/utility/test_splitdimd.py +96 -0
  723. tests/transforms/utils/__init__.py +10 -0
  724. tests/transforms/utils/test_correct_crop_centers.py +36 -0
  725. tests/transforms/utils/test_get_unique_labels.py +45 -0
  726. tests/transforms/utils/test_print_transform_backends.py +29 -0
  727. tests/transforms/utils/test_soft_clip.py +125 -0
  728. tests/utils/__init__.py +10 -0
  729. tests/utils/enums/__init__.py +10 -0
  730. tests/utils/enums/test_hovernet_loss.py +190 -0
  731. tests/utils/enums/test_ordering.py +289 -0
  732. tests/utils/enums/test_wsireader.py +663 -0
  733. tests/utils/misc/__init__.py +10 -0
  734. tests/utils/misc/test_ensure_tuple.py +53 -0
  735. tests/utils/misc/test_monai_env_vars.py +44 -0
  736. tests/utils/misc/test_monai_utils_misc.py +103 -0
  737. tests/utils/misc/test_str2bool.py +34 -0
  738. tests/utils/misc/test_str2list.py +33 -0
  739. tests/utils/test_alias.py +44 -0
  740. tests/utils/test_component_store.py +73 -0
  741. tests/utils/test_deprecated.py +455 -0
  742. tests/utils/test_enum_bound_interp.py +75 -0
  743. tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
  744. tests/utils/test_get_package_version.py +34 -0
  745. tests/utils/test_handler_logfile.py +84 -0
  746. tests/utils/test_handler_metric_logger.py +62 -0
  747. tests/utils/test_list_to_dict.py +43 -0
  748. tests/utils/test_look_up_option.py +87 -0
  749. tests/utils/test_optional_import.py +80 -0
  750. tests/utils/test_pad_mode.py +39 -0
  751. tests/utils/test_profiling.py +208 -0
  752. tests/utils/test_rankfilter_dist.py +77 -0
  753. tests/utils/test_require_pkg.py +83 -0
  754. tests/utils/test_sample_slices.py +43 -0
  755. tests/utils/test_set_determinism.py +74 -0
  756. tests/utils/test_squeeze_unsqueeze.py +71 -0
  757. tests/utils/test_state_cacher.py +67 -0
  758. tests/utils/test_torchscript_utils.py +113 -0
  759. tests/utils/test_version.py +91 -0
  760. tests/utils/test_version_after.py +65 -0
  761. tests/utils/type_conversion/__init__.py +10 -0
  762. tests/utils/type_conversion/test_convert_data_type.py +152 -0
  763. tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
  764. tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
  765. tests/visualize/__init__.py +10 -0
  766. tests/visualize/test_img2tensorboard.py +46 -0
  767. tests/visualize/test_occlusion_sensitivity.py +128 -0
  768. tests/visualize/test_plot_2d_or_3d_image.py +74 -0
  769. tests/visualize/test_vis_cam.py +98 -0
  770. tests/visualize/test_vis_gradcam.py +211 -0
  771. tests/visualize/utils/__init__.py +10 -0
  772. tests/visualize/utils/test_blend_images.py +63 -0
  773. tests/visualize/utils/test_matshow3d.py +133 -0
  774. monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
  775. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
  776. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
@@ -0,0 +1,112 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ import torch
18
+
19
+ from monai.data import MetaTensor, set_track_meta
20
+ from monai.transforms import RandRotate90d
21
+ from tests.lazy_transforms_utils import test_resampler_lazy
22
+ from tests.test_utils import TEST_NDARRAYS_ALL, NumpyImageTestCase2D, assert_allclose, test_local_inversion
23
+
24
+
25
+ class TestRandRotate90d(NumpyImageTestCase2D):
26
+ def test_default(self):
27
+ key = "test"
28
+ rotate = RandRotate90d(keys=key)
29
+ for p in TEST_NDARRAYS_ALL:
30
+ rotate.set_random_state(1323)
31
+ im = {key: p(self.imt[0])}
32
+ call_param = {"data": im}
33
+ rotated = rotate(**call_param)
34
+
35
+ # test lazy
36
+ test_resampler_lazy(rotate, rotated, call_param=call_param, seed=1323, output_key=key)
37
+ rotate.lazy = False
38
+
39
+ test_local_inversion(rotate, rotated, im, key)
40
+ expected = [np.rot90(channel, 0, (0, 1)) for channel in self.imt[0]]
41
+ expected = np.stack(expected)
42
+ assert_allclose(rotated[key], p(expected), type_test="tensor")
43
+
44
+ set_track_meta(False)
45
+ rotated = rotate(im)[key]
46
+ self.assertNotIsInstance(rotated, MetaTensor)
47
+ self.assertIsInstance(rotated, torch.Tensor)
48
+ set_track_meta(True)
49
+
50
+ def test_k(self):
51
+ key = "test"
52
+ rotate = RandRotate90d(keys=key, max_k=2)
53
+ for p in TEST_NDARRAYS_ALL:
54
+ rotate.set_random_state(234)
55
+ im = {key: p(self.imt[0])}
56
+ call_param = {"data": im}
57
+ rotated = rotate(**call_param)
58
+
59
+ # test lazy
60
+ test_resampler_lazy(rotate, rotated, call_param=call_param, seed=234, output_key=key)
61
+ rotate.lazy = False
62
+
63
+ test_local_inversion(rotate, rotated, im, key)
64
+ expected = [np.rot90(channel, 0, (0, 1)) for channel in self.imt[0]]
65
+ expected = np.stack(expected)
66
+ assert_allclose(rotated[key], p(expected), type_test="tensor")
67
+
68
+ def test_spatial_axes(self):
69
+ key = "test"
70
+ rotate = RandRotate90d(keys=key, spatial_axes=(0, 1))
71
+ for p in TEST_NDARRAYS_ALL:
72
+ rotate.set_random_state(234)
73
+ im = {key: p(self.imt[0])}
74
+ call_param = {"data": im}
75
+ rotated = rotate(**call_param)
76
+
77
+ # test lazy
78
+ test_resampler_lazy(rotate, rotated, call_param=call_param, seed=234, output_key=key)
79
+ rotate.lazy = False
80
+
81
+ test_local_inversion(rotate, rotated, im, key)
82
+ expected = [np.rot90(channel, 0, (0, 1)) for channel in self.imt[0]]
83
+ expected = np.stack(expected)
84
+ assert_allclose(rotated[key], p(expected), type_test="tensor")
85
+
86
+ def test_prob_k_spatial_axes(self):
87
+ key = "test"
88
+ rotate = RandRotate90d(keys=key, prob=1.0, max_k=2, spatial_axes=(0, 1))
89
+ for p in TEST_NDARRAYS_ALL:
90
+ rotate.set_random_state(234)
91
+ im = {key: p(self.imt[0])}
92
+ call_param = {"data": im}
93
+ rotated = rotate(**call_param)
94
+
95
+ # test lazy
96
+ test_resampler_lazy(rotate, rotated, call_param=call_param, seed=234, output_key=key)
97
+ rotate.lazy = False
98
+
99
+ expected = [np.rot90(channel, 1, (0, 1)) for channel in self.imt[0]]
100
+ expected = np.stack(expected)
101
+ assert_allclose(rotated[key], p(expected), type_test="tensor")
102
+ test_local_inversion(rotate, rotated, im, key)
103
+
104
+ def test_no_key(self):
105
+ key = "unknown"
106
+ rotate = RandRotate90d(keys=key, prob=1.0, max_k=2, spatial_axes=(0, 1))
107
+ with self.assertRaisesRegex(KeyError, ""):
108
+ rotate({"test": self.imt[0]})
109
+
110
+
111
+ if __name__ == "__main__":
112
+ unittest.main()
@@ -0,0 +1,187 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ import scipy.ndimage
18
+ import torch
19
+ from parameterized import parameterized
20
+
21
+ from monai.config import USE_COMPILED
22
+ from monai.transforms import RandRotated
23
+ from monai.utils import GridSampleMode, GridSamplePadMode
24
+ from tests.lazy_transforms_utils import test_resampler_lazy
25
+ from tests.test_utils import TEST_NDARRAYS_ALL, NumpyImageTestCase2D, NumpyImageTestCase3D, test_local_inversion
26
+
27
+ TEST_CASES_2D: list[tuple] = []
28
+ for p in TEST_NDARRAYS_ALL:
29
+ TEST_CASES_2D.append((p, np.pi / 2, True, "bilinear", "border", False))
30
+ TEST_CASES_2D.append((p, np.pi / 4, True, "nearest", "border", False))
31
+ TEST_CASES_2D.append((p, np.pi, False, "nearest", "zeros", True))
32
+ if not USE_COMPILED:
33
+ TEST_CASES_2D.append((p, (-np.pi / 4, 0), False, "nearest", "zeros", True))
34
+
35
+ TEST_CASES_3D: list[tuple] = []
36
+ for p in TEST_NDARRAYS_ALL:
37
+ TEST_CASES_3D.append(
38
+ (p, np.pi / 2, -np.pi / 6, (0.0, np.pi), False, "bilinear", "border", False, (1, 81, 110, 112))
39
+ )
40
+ TEST_CASES_3D.append(
41
+ (
42
+ p,
43
+ np.pi / 2,
44
+ -np.pi / 6,
45
+ (0.0, np.pi),
46
+ False,
47
+ GridSampleMode.NEAREST,
48
+ GridSamplePadMode.BORDER,
49
+ False,
50
+ (1, 81, 110, 112),
51
+ )
52
+ )
53
+ TEST_CASES_3D.append(
54
+ (
55
+ p,
56
+ np.pi / 4,
57
+ (-np.pi / 9, np.pi / 4.5),
58
+ (np.pi / 9, np.pi / 6),
59
+ False,
60
+ "nearest",
61
+ "border",
62
+ True,
63
+ (1, 97, 100, 97),
64
+ )
65
+ )
66
+ TEST_CASES_3D.append(
67
+ (
68
+ p,
69
+ np.pi / 4,
70
+ (-np.pi / 9, np.pi / 4.5),
71
+ (np.pi / 9, np.pi / 6),
72
+ False,
73
+ GridSampleMode.NEAREST,
74
+ GridSamplePadMode.BORDER,
75
+ True,
76
+ (1, 97, 100, 97),
77
+ )
78
+ )
79
+ TEST_CASES_3D.append(
80
+ (
81
+ p,
82
+ 0.0,
83
+ (2 * np.pi, 2.06 * np.pi),
84
+ (-np.pi / 180, np.pi / 180),
85
+ True,
86
+ "nearest",
87
+ "zeros",
88
+ True,
89
+ (1, 64, 48, 80),
90
+ )
91
+ )
92
+ TEST_CASES_3D.append(
93
+ (
94
+ p,
95
+ 0.0,
96
+ (2 * np.pi, 2.06 * np.pi),
97
+ (-np.pi / 180, np.pi / 180),
98
+ True,
99
+ GridSampleMode.NEAREST,
100
+ GridSamplePadMode.ZEROS,
101
+ True,
102
+ (1, 64, 48, 80),
103
+ )
104
+ )
105
+ TEST_CASES_3D.append((p, (-np.pi / 4, 0), 0, 0, False, "nearest", "zeros", False, (1, 64, 61, 87)))
106
+ TEST_CASES_3D.append(
107
+ (p, (-np.pi / 4, 0), 0, 0, False, GridSampleMode.NEAREST, GridSamplePadMode.ZEROS, False, (1, 64, 61, 87))
108
+ )
109
+
110
+
111
+ class TestRandRotated2D(NumpyImageTestCase2D):
112
+ @parameterized.expand(TEST_CASES_2D)
113
+ def test_correct_results(self, im_type, degrees, keep_size, mode, padding_mode, align_corners):
114
+ init_param = {
115
+ "keys": "img",
116
+ "range_x": degrees,
117
+ "prob": 1.0,
118
+ "keep_size": keep_size,
119
+ "mode": mode,
120
+ "padding_mode": padding_mode,
121
+ "align_corners": align_corners,
122
+ "dtype": np.float64,
123
+ }
124
+ rotate_fn = RandRotated(**init_param)
125
+ im = im_type(self.imt[0])
126
+ rotate_fn.set_random_state(243)
127
+ call_param = {"data": {"img": im, "seg": im_type(self.segn[0])}}
128
+ rotated = rotate_fn(**call_param)
129
+
130
+ # test lazy
131
+ test_resampler_lazy(
132
+ rotate_fn, rotated, init_param=init_param, call_param=call_param, seed=243, output_key="img"
133
+ )
134
+
135
+ _order = 0 if mode == "nearest" else 1
136
+ if padding_mode == "border":
137
+ _mode = "nearest"
138
+ elif padding_mode == "reflection":
139
+ _mode = "reflect"
140
+ else:
141
+ _mode = "constant"
142
+ angle = rotate_fn.rand_rotate.x
143
+ expected = scipy.ndimage.rotate(
144
+ self.imt[0, 0], -np.rad2deg(angle), (0, 1), not keep_size, order=_order, mode=_mode, prefilter=False
145
+ )
146
+ test_local_inversion(rotate_fn, rotated, {"img": im}, "img")
147
+ for k, v in rotated.items():
148
+ rotated[k] = v.cpu() if isinstance(v, torch.Tensor) else v
149
+ expected = np.stack(expected).astype(np.float32)
150
+ good = np.sum(np.isclose(expected, rotated["img"][0], atol=1e-3))
151
+ self.assertLessEqual(np.abs(good - expected.size), 40, "diff at most 40 pixels")
152
+
153
+
154
+ @unittest.skipIf(USE_COMPILED, "unit tests not for compiled version.")
155
+ class TestRandRotated3D(NumpyImageTestCase3D):
156
+ @parameterized.expand(TEST_CASES_3D)
157
+ def test_correct_shapes(self, im_type, x, y, z, keep_size, mode, padding_mode, align_corners, expected):
158
+ init_param = {
159
+ "keys": ("img", "seg"),
160
+ "range_x": x,
161
+ "range_y": y,
162
+ "range_z": z,
163
+ "prob": 1.0,
164
+ "keep_size": keep_size,
165
+ "mode": mode,
166
+ "padding_mode": padding_mode,
167
+ "align_corners": align_corners,
168
+ "dtype": np.float64,
169
+ }
170
+ rotate_fn = RandRotated(**init_param)
171
+ rotate_fn.set_random_state(243)
172
+ call_param = {"data": {"img": im_type(self.imt[0]), "seg": im_type(self.segn[0])}}
173
+ rotated = rotate_fn(**call_param)
174
+
175
+ # test lazy
176
+ test_resampler_lazy(
177
+ rotate_fn, rotated, init_param=init_param, call_param=call_param, seed=243, output_key="img"
178
+ )
179
+ np.testing.assert_allclose(rotated["img"].shape, expected)
180
+
181
+ rotate_fn.prob = 0.0
182
+ rotated = rotate_fn({"img": im_type(self.imt[0]), "seg": im_type(self.segn[0])})
183
+ self.assertEqual(rotated["seg"].dtype, torch.float32)
184
+
185
+
186
+ if __name__ == "__main__":
187
+ unittest.main()
@@ -0,0 +1,78 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ from parameterized import parameterized
18
+
19
+ from monai.transforms import RandScaleCrop
20
+ from tests.croppers import CropTest
21
+ from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose
22
+
23
+ TEST_SHAPES = [
24
+ [{"roi_scale": [1.0, 1.0, -1.0], "random_center": True}, (3, 3, 3, 4), (3, 3, 3, 4)],
25
+ [{"roi_scale": [1.0, 1.0, 1.0], "random_center": False}, (3, 3, 3, 3), (3, 3, 3, 3)],
26
+ ]
27
+
28
+ TEST_VALUES = [
29
+ [
30
+ {"roi_scale": [0.6, 0.6], "random_center": False},
31
+ np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 1, 2, 1, 0], [0, 0, 0, 0, 0]]]),
32
+ ]
33
+ ]
34
+
35
+ TEST_RANDOM_SHAPES = [
36
+ [
37
+ {"roi_scale": [0.75, 0.6, 0.5], "max_roi_scale": [1.0, -1.0, 0.6], "random_center": True, "random_size": True},
38
+ (1, 4, 5, 6),
39
+ (1, 3, 4, 3),
40
+ ],
41
+ [{"roi_scale": 0.6, "max_roi_scale": 0.8, "random_center": True, "random_size": True}, (1, 4, 5, 6), (1, 3, 4, 4)],
42
+ [{"roi_scale": 0.2, "max_roi_scale": 0.8, "random_center": True, "random_size": True}, (1, 4, 5, 6), (1, 3, 2, 4)],
43
+ ]
44
+
45
+
46
+ class TestRandScaleCrop(CropTest):
47
+ Cropper = RandScaleCrop
48
+
49
+ @parameterized.expand(TEST_SHAPES)
50
+ def test_shape(self, input_param, input_shape, expected_shape):
51
+ self.crop_test(input_param, input_shape, expected_shape)
52
+
53
+ @parameterized.expand(TEST_VALUES)
54
+ def test_value(self, input_param, input_data):
55
+ for im_type in TEST_NDARRAYS_ALL:
56
+ with self.subTest(im_type=im_type):
57
+ cropper = RandScaleCrop(**input_param)
58
+ result = cropper(im_type(input_data))
59
+ roi = [(2 - i // 2, 2 + i - i // 2) for i in cropper._size]
60
+ assert_allclose(result, input_data[:, roi[0][0] : roi[0][1], roi[1][0] : roi[1][1]], type_test="tensor")
61
+
62
+ @parameterized.expand(TEST_RANDOM_SHAPES)
63
+ def test_random_shape(self, input_param, input_shape, expected_shape):
64
+ for im_type in TEST_NDARRAYS_ALL:
65
+ with self.subTest(im_type=im_type):
66
+ cropper = RandScaleCrop(**input_param)
67
+ cropper.set_random_state(seed=123)
68
+ input_data = im_type(np.random.randint(0, 2, input_shape))
69
+ result = cropper(input_data)
70
+ self.assertTupleEqual(result.shape, expected_shape)
71
+
72
+ @parameterized.expand(TEST_SHAPES)
73
+ def test_pending_ops(self, input_param, input_shape, _):
74
+ self.crop_test_pending_ops(input_param, input_shape)
75
+
76
+
77
+ if __name__ == "__main__":
78
+ unittest.main()
@@ -0,0 +1,98 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ from parameterized import parameterized
18
+
19
+ from monai.transforms import RandScaleCropd
20
+ from tests.croppers import CropTest
21
+ from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose
22
+
23
+ TEST_SHAPES = [
24
+ [{"keys": "img", "roi_scale": [1.0, 1.0, -1.0], "random_center": True}, (3, 3, 3, 4), (3, 3, 3, 4)],
25
+ [
26
+ # test `allow_missing_keys` with key "label"
27
+ {"keys": ["label", "img"], "roi_scale": [1.0, 1.0, 1.0], "random_center": False, "allow_missing_keys": True},
28
+ (3, 3, 3, 3),
29
+ (3, 3, 3, 3),
30
+ ],
31
+ ]
32
+
33
+ TEST_VALUES = [
34
+ [
35
+ {"keys": "img", "roi_scale": [0.6, 0.6], "random_center": False},
36
+ np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 1, 2, 1, 0], [0, 0, 0, 0, 0]]]),
37
+ ]
38
+ ]
39
+
40
+ TEST_RANDOM_SHAPES = [
41
+ [
42
+ {
43
+ "keys": "img",
44
+ "roi_scale": [0.75, 0.6, 0.5],
45
+ "max_roi_scale": [1.0, -1.0, 0.6],
46
+ "random_center": True,
47
+ "random_size": True,
48
+ },
49
+ (1, 4, 5, 6),
50
+ (1, 3, 4, 3),
51
+ ],
52
+ [
53
+ {"keys": "img", "roi_scale": 0.6, "max_roi_scale": 0.8, "random_center": True, "random_size": True},
54
+ (1, 4, 5, 6),
55
+ (1, 3, 4, 4),
56
+ ],
57
+ [
58
+ {"keys": "img", "roi_scale": 0.2, "max_roi_scale": 0.8, "random_center": True, "random_size": True},
59
+ (1, 4, 5, 6),
60
+ (1, 3, 2, 4),
61
+ ],
62
+ ]
63
+
64
+
65
+ class TestRandScaleCropd(CropTest):
66
+ Cropper = RandScaleCropd
67
+
68
+ @parameterized.expand(TEST_SHAPES)
69
+ def test_shape(self, input_param, input_shape, expected_shape):
70
+ self.crop_test(input_param, input_shape, expected_shape)
71
+
72
+ @parameterized.expand(TEST_VALUES)
73
+ def test_value(self, input_param, input_im):
74
+ for im_type in TEST_NDARRAYS_ALL:
75
+ with self.subTest(im_type=im_type):
76
+ cropper = self.Cropper(**input_param)
77
+ input_data = {"img": im_type(input_im)}
78
+ result = cropper(input_data)["img"]
79
+ roi = [(2 - i // 2, 2 + i - i // 2) for i in cropper.cropper._size]
80
+ assert_allclose(result, input_im[:, roi[0][0] : roi[0][1], roi[1][0] : roi[1][1]], type_test="tensor")
81
+
82
+ @parameterized.expand(TEST_RANDOM_SHAPES)
83
+ def test_random_shape(self, input_param, input_shape, expected_shape):
84
+ for im_type in TEST_NDARRAYS_ALL:
85
+ with self.subTest(im_type=im_type):
86
+ cropper = self.Cropper(**input_param)
87
+ cropper.set_random_state(seed=123)
88
+ input_data = {"img": im_type(np.random.randint(0, 2, input_shape))}
89
+ result = cropper(input_data)["img"]
90
+ self.assertTupleEqual(result.shape, expected_shape)
91
+
92
+ @parameterized.expand(TEST_SHAPES)
93
+ def test_pending_ops(self, input_param, input_shape, _):
94
+ self.crop_test_pending_ops(input_param, input_shape)
95
+
96
+
97
+ if __name__ == "__main__":
98
+ unittest.main()
@@ -0,0 +1,54 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ from parameterized import parameterized
18
+
19
+ from monai.transforms import RandScaleIntensity
20
+ from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
21
+
22
+
23
+ class TestRandScaleIntensity(NumpyImageTestCase2D):
24
+ @parameterized.expand([[p] for p in TEST_NDARRAYS])
25
+ def test_value(self, p):
26
+ scaler = RandScaleIntensity(factors=0.5, prob=1.0)
27
+ scaler.set_random_state(seed=0)
28
+ im = p(self.imt)
29
+ result = scaler(im)
30
+ np.random.seed(0)
31
+ # simulate the randomize() of transform
32
+ np.random.random()
33
+ expected = p((self.imt * (1 + np.random.uniform(low=-0.5, high=0.5))).astype(np.float32))
34
+ assert_allclose(result, p(expected), rtol=1e-7, atol=0, type_test="tensor")
35
+
36
+ @parameterized.expand([[p] for p in TEST_NDARRAYS])
37
+ def test_channel_wise(self, p):
38
+ scaler = RandScaleIntensity(factors=0.5, channel_wise=True, prob=1.0)
39
+ scaler.set_random_state(seed=0)
40
+ im = p(self.imt)
41
+ result = scaler(im)
42
+ np.random.seed(0)
43
+ # simulate the randomize() of transform
44
+ np.random.random()
45
+ channel_num = self.imt.shape[0]
46
+ factor = [np.random.uniform(low=-0.5, high=0.5) for _ in range(channel_num)]
47
+ expected = p(
48
+ np.stack([np.asarray((self.imt[i]) * (1 + factor[i])) for i in range(channel_num)]).astype(np.float32)
49
+ )
50
+ assert_allclose(result, expected, atol=0, rtol=1e-5, type_test=False)
51
+
52
+
53
+ if __name__ == "__main__":
54
+ unittest.main()
@@ -0,0 +1,41 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ from parameterized import parameterized
18
+
19
+ from monai.transforms import RandScaleIntensityFixedMean
20
+ from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
21
+
22
+
23
+ class TestRandScaleIntensity(NumpyImageTestCase2D):
24
+ @parameterized.expand([[p] for p in TEST_NDARRAYS])
25
+ def test_value(self, p):
26
+ scaler = RandScaleIntensityFixedMean(prob=1.0, factors=0.5)
27
+ scaler.set_random_state(seed=0)
28
+ im = p(self.imt)
29
+ result = scaler(im)
30
+ np.random.seed(0)
31
+ # simulate the randomize() of transform
32
+ np.random.random()
33
+ mn = im.mean()
34
+ im = im - mn
35
+ expected = (1 + np.random.uniform(low=-0.5, high=0.5)) * im
36
+ expected = expected + mn
37
+ assert_allclose(result, expected, type_test="tensor", atol=1e-7)
38
+
39
+
40
+ if __name__ == "__main__":
41
+ unittest.main()
@@ -0,0 +1,41 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+
18
+ from monai.transforms import RandScaleIntensityFixedMeand
19
+ from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
20
+
21
+
22
+ class TestRandScaleIntensityFixedMeand(NumpyImageTestCase2D):
23
+ def test_value(self):
24
+ key = "img"
25
+ for p in TEST_NDARRAYS:
26
+ scaler = RandScaleIntensityFixedMeand(keys=[key], factors=0.5, prob=1.0)
27
+ scaler.set_random_state(seed=0)
28
+ result = scaler({key: p(self.imt)})
29
+ np.random.seed(0)
30
+ # simulate the randomize function of transform
31
+ np.random.random()
32
+ im = self.imt
33
+ mn = im.mean()
34
+ im = im - mn
35
+ expected = (1 + np.random.uniform(low=-0.5, high=0.5)) * im
36
+ expected = expected + mn
37
+ assert_allclose(result[key], p(expected), type_test="tensor", atol=1e-6)
38
+
39
+
40
+ if __name__ == "__main__":
41
+ unittest.main()
@@ -0,0 +1,53 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+
18
+ from monai.transforms import RandScaleIntensityd
19
+ from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
20
+
21
+
22
+ class TestRandScaleIntensityd(NumpyImageTestCase2D):
23
+ def test_value(self):
24
+ key = "img"
25
+ for p in TEST_NDARRAYS:
26
+ scaler = RandScaleIntensityd(keys=[key], factors=0.5, prob=1.0)
27
+ scaler.set_random_state(seed=0)
28
+ result = scaler({key: p(self.imt)})
29
+ np.random.seed(0)
30
+ # simulate the randomize function of transform
31
+ np.random.random()
32
+ expected = (self.imt * (1 + np.random.uniform(low=-0.5, high=0.5))).astype(np.float32)
33
+ assert_allclose(result[key], p(expected), type_test="tensor")
34
+
35
+ def test_channel_wise(self):
36
+ key = "img"
37
+ for p in TEST_NDARRAYS:
38
+ scaler = RandScaleIntensityd(keys=[key], factors=0.5, prob=1.0, channel_wise=True)
39
+ scaler.set_random_state(seed=0)
40
+ result = scaler({key: p(self.imt)})
41
+ np.random.seed(0)
42
+ # simulate the randomize function of transform
43
+ np.random.random()
44
+ channel_num = self.imt.shape[0]
45
+ factor = [np.random.uniform(low=-0.5, high=0.5) for _ in range(channel_num)]
46
+ expected = p(
47
+ np.stack([np.asarray((self.imt[i]) * (1 + factor[i])) for i in range(channel_num)]).astype(np.float32)
48
+ )
49
+ assert_allclose(result[key], p(expected), type_test="tensor")
50
+
51
+
52
+ if __name__ == "__main__":
53
+ unittest.main()