monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
- tests/networks/nets/test_patch_gan_dicriminator.py +179 -0
- tests/networks/nets/test_quicknat.py +57 -0
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- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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import torch
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from monai.data import MetaTensor, set_track_meta
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from monai.transforms import RandRotate90d
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from tests.lazy_transforms_utils import test_resampler_lazy
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from tests.test_utils import TEST_NDARRAYS_ALL, NumpyImageTestCase2D, assert_allclose, test_local_inversion
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class TestRandRotate90d(NumpyImageTestCase2D):
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def test_default(self):
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key = "test"
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rotate = RandRotate90d(keys=key)
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for p in TEST_NDARRAYS_ALL:
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rotate.set_random_state(1323)
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im = {key: p(self.imt[0])}
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call_param = {"data": im}
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rotated = rotate(**call_param)
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# test lazy
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test_resampler_lazy(rotate, rotated, call_param=call_param, seed=1323, output_key=key)
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rotate.lazy = False
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test_local_inversion(rotate, rotated, im, key)
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expected = [np.rot90(channel, 0, (0, 1)) for channel in self.imt[0]]
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expected = np.stack(expected)
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assert_allclose(rotated[key], p(expected), type_test="tensor")
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set_track_meta(False)
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rotated = rotate(im)[key]
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self.assertNotIsInstance(rotated, MetaTensor)
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self.assertIsInstance(rotated, torch.Tensor)
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set_track_meta(True)
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def test_k(self):
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key = "test"
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rotate = RandRotate90d(keys=key, max_k=2)
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for p in TEST_NDARRAYS_ALL:
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rotate.set_random_state(234)
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im = {key: p(self.imt[0])}
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call_param = {"data": im}
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rotated = rotate(**call_param)
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# test lazy
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test_resampler_lazy(rotate, rotated, call_param=call_param, seed=234, output_key=key)
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rotate.lazy = False
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test_local_inversion(rotate, rotated, im, key)
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expected = [np.rot90(channel, 0, (0, 1)) for channel in self.imt[0]]
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expected = np.stack(expected)
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assert_allclose(rotated[key], p(expected), type_test="tensor")
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def test_spatial_axes(self):
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key = "test"
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rotate = RandRotate90d(keys=key, spatial_axes=(0, 1))
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for p in TEST_NDARRAYS_ALL:
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rotate.set_random_state(234)
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im = {key: p(self.imt[0])}
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call_param = {"data": im}
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rotated = rotate(**call_param)
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# test lazy
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test_resampler_lazy(rotate, rotated, call_param=call_param, seed=234, output_key=key)
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rotate.lazy = False
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test_local_inversion(rotate, rotated, im, key)
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expected = [np.rot90(channel, 0, (0, 1)) for channel in self.imt[0]]
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expected = np.stack(expected)
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assert_allclose(rotated[key], p(expected), type_test="tensor")
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def test_prob_k_spatial_axes(self):
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key = "test"
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rotate = RandRotate90d(keys=key, prob=1.0, max_k=2, spatial_axes=(0, 1))
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for p in TEST_NDARRAYS_ALL:
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rotate.set_random_state(234)
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im = {key: p(self.imt[0])}
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call_param = {"data": im}
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rotated = rotate(**call_param)
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# test lazy
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test_resampler_lazy(rotate, rotated, call_param=call_param, seed=234, output_key=key)
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rotate.lazy = False
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expected = [np.rot90(channel, 1, (0, 1)) for channel in self.imt[0]]
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expected = np.stack(expected)
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assert_allclose(rotated[key], p(expected), type_test="tensor")
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test_local_inversion(rotate, rotated, im, key)
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def test_no_key(self):
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key = "unknown"
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rotate = RandRotate90d(keys=key, prob=1.0, max_k=2, spatial_axes=(0, 1))
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with self.assertRaisesRegex(KeyError, ""):
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rotate({"test": self.imt[0]})
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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import scipy.ndimage
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import torch
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from parameterized import parameterized
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from monai.config import USE_COMPILED
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from monai.transforms import RandRotated
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from monai.utils import GridSampleMode, GridSamplePadMode
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from tests.lazy_transforms_utils import test_resampler_lazy
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from tests.test_utils import TEST_NDARRAYS_ALL, NumpyImageTestCase2D, NumpyImageTestCase3D, test_local_inversion
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TEST_CASES_2D: list[tuple] = []
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for p in TEST_NDARRAYS_ALL:
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TEST_CASES_2D.append((p, np.pi / 2, True, "bilinear", "border", False))
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TEST_CASES_2D.append((p, np.pi / 4, True, "nearest", "border", False))
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TEST_CASES_2D.append((p, np.pi, False, "nearest", "zeros", True))
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if not USE_COMPILED:
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TEST_CASES_2D.append((p, (-np.pi / 4, 0), False, "nearest", "zeros", True))
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TEST_CASES_3D: list[tuple] = []
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for p in TEST_NDARRAYS_ALL:
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TEST_CASES_3D.append(
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(p, np.pi / 2, -np.pi / 6, (0.0, np.pi), False, "bilinear", "border", False, (1, 81, 110, 112))
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)
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TEST_CASES_3D.append(
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(
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p,
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np.pi / 2,
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-np.pi / 6,
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(0.0, np.pi),
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False,
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GridSampleMode.NEAREST,
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GridSamplePadMode.BORDER,
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False,
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(1, 81, 110, 112),
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)
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)
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TEST_CASES_3D.append(
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(
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p,
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np.pi / 4,
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(-np.pi / 9, np.pi / 4.5),
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(np.pi / 9, np.pi / 6),
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False,
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"nearest",
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"border",
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True,
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(1, 97, 100, 97),
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)
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)
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TEST_CASES_3D.append(
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(
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p,
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np.pi / 4,
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(-np.pi / 9, np.pi / 4.5),
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(np.pi / 9, np.pi / 6),
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False,
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GridSampleMode.NEAREST,
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GridSamplePadMode.BORDER,
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True,
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(1, 97, 100, 97),
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)
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)
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TEST_CASES_3D.append(
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(
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p,
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0.0,
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(2 * np.pi, 2.06 * np.pi),
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(-np.pi / 180, np.pi / 180),
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True,
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"nearest",
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"zeros",
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True,
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(1, 64, 48, 80),
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)
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)
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TEST_CASES_3D.append(
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(
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p,
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0.0,
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(2 * np.pi, 2.06 * np.pi),
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(-np.pi / 180, np.pi / 180),
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True,
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GridSampleMode.NEAREST,
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GridSamplePadMode.ZEROS,
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True,
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(1, 64, 48, 80),
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)
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)
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TEST_CASES_3D.append((p, (-np.pi / 4, 0), 0, 0, False, "nearest", "zeros", False, (1, 64, 61, 87)))
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TEST_CASES_3D.append(
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(p, (-np.pi / 4, 0), 0, 0, False, GridSampleMode.NEAREST, GridSamplePadMode.ZEROS, False, (1, 64, 61, 87))
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)
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class TestRandRotated2D(NumpyImageTestCase2D):
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@parameterized.expand(TEST_CASES_2D)
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def test_correct_results(self, im_type, degrees, keep_size, mode, padding_mode, align_corners):
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init_param = {
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"keys": "img",
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"range_x": degrees,
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"prob": 1.0,
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"keep_size": keep_size,
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"mode": mode,
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"padding_mode": padding_mode,
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"align_corners": align_corners,
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"dtype": np.float64,
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}
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rotate_fn = RandRotated(**init_param)
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im = im_type(self.imt[0])
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rotate_fn.set_random_state(243)
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call_param = {"data": {"img": im, "seg": im_type(self.segn[0])}}
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rotated = rotate_fn(**call_param)
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# test lazy
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test_resampler_lazy(
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rotate_fn, rotated, init_param=init_param, call_param=call_param, seed=243, output_key="img"
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)
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_order = 0 if mode == "nearest" else 1
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if padding_mode == "border":
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_mode = "nearest"
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elif padding_mode == "reflection":
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_mode = "reflect"
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else:
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_mode = "constant"
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angle = rotate_fn.rand_rotate.x
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expected = scipy.ndimage.rotate(
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self.imt[0, 0], -np.rad2deg(angle), (0, 1), not keep_size, order=_order, mode=_mode, prefilter=False
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)
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test_local_inversion(rotate_fn, rotated, {"img": im}, "img")
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for k, v in rotated.items():
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rotated[k] = v.cpu() if isinstance(v, torch.Tensor) else v
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expected = np.stack(expected).astype(np.float32)
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good = np.sum(np.isclose(expected, rotated["img"][0], atol=1e-3))
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self.assertLessEqual(np.abs(good - expected.size), 40, "diff at most 40 pixels")
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@unittest.skipIf(USE_COMPILED, "unit tests not for compiled version.")
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class TestRandRotated3D(NumpyImageTestCase3D):
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@parameterized.expand(TEST_CASES_3D)
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def test_correct_shapes(self, im_type, x, y, z, keep_size, mode, padding_mode, align_corners, expected):
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init_param = {
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"keys": ("img", "seg"),
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"range_x": x,
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"range_y": y,
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"range_z": z,
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"prob": 1.0,
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"keep_size": keep_size,
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"mode": mode,
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"padding_mode": padding_mode,
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"align_corners": align_corners,
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"dtype": np.float64,
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}
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rotate_fn = RandRotated(**init_param)
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rotate_fn.set_random_state(243)
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call_param = {"data": {"img": im_type(self.imt[0]), "seg": im_type(self.segn[0])}}
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rotated = rotate_fn(**call_param)
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# test lazy
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test_resampler_lazy(
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rotate_fn, rotated, init_param=init_param, call_param=call_param, seed=243, output_key="img"
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)
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np.testing.assert_allclose(rotated["img"].shape, expected)
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rotate_fn.prob = 0.0
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rotated = rotate_fn({"img": im_type(self.imt[0]), "seg": im_type(self.segn[0])})
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self.assertEqual(rotated["seg"].dtype, torch.float32)
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if __name__ == "__main__":
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unittest.main()
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@@ -0,0 +1,78 @@
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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from parameterized import parameterized
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18
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+
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19
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+
from monai.transforms import RandScaleCrop
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20
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+
from tests.croppers import CropTest
|
21
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+
from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose
|
22
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+
|
23
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+
TEST_SHAPES = [
|
24
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+
[{"roi_scale": [1.0, 1.0, -1.0], "random_center": True}, (3, 3, 3, 4), (3, 3, 3, 4)],
|
25
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+
[{"roi_scale": [1.0, 1.0, 1.0], "random_center": False}, (3, 3, 3, 3), (3, 3, 3, 3)],
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26
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+
]
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27
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+
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28
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+
TEST_VALUES = [
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[
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+
{"roi_scale": [0.6, 0.6], "random_center": False},
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+
np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 1, 2, 1, 0], [0, 0, 0, 0, 0]]]),
|
32
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+
]
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+
]
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34
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+
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35
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+
TEST_RANDOM_SHAPES = [
|
36
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+
[
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37
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+
{"roi_scale": [0.75, 0.6, 0.5], "max_roi_scale": [1.0, -1.0, 0.6], "random_center": True, "random_size": True},
|
38
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+
(1, 4, 5, 6),
|
39
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+
(1, 3, 4, 3),
|
40
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+
],
|
41
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[{"roi_scale": 0.6, "max_roi_scale": 0.8, "random_center": True, "random_size": True}, (1, 4, 5, 6), (1, 3, 4, 4)],
|
42
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+
[{"roi_scale": 0.2, "max_roi_scale": 0.8, "random_center": True, "random_size": True}, (1, 4, 5, 6), (1, 3, 2, 4)],
|
43
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+
]
|
44
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+
|
45
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+
|
46
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+
class TestRandScaleCrop(CropTest):
|
47
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+
Cropper = RandScaleCrop
|
48
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+
|
49
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+
@parameterized.expand(TEST_SHAPES)
|
50
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+
def test_shape(self, input_param, input_shape, expected_shape):
|
51
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+
self.crop_test(input_param, input_shape, expected_shape)
|
52
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+
|
53
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+
@parameterized.expand(TEST_VALUES)
|
54
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+
def test_value(self, input_param, input_data):
|
55
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+
for im_type in TEST_NDARRAYS_ALL:
|
56
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+
with self.subTest(im_type=im_type):
|
57
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+
cropper = RandScaleCrop(**input_param)
|
58
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+
result = cropper(im_type(input_data))
|
59
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+
roi = [(2 - i // 2, 2 + i - i // 2) for i in cropper._size]
|
60
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+
assert_allclose(result, input_data[:, roi[0][0] : roi[0][1], roi[1][0] : roi[1][1]], type_test="tensor")
|
61
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+
|
62
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+
@parameterized.expand(TEST_RANDOM_SHAPES)
|
63
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+
def test_random_shape(self, input_param, input_shape, expected_shape):
|
64
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+
for im_type in TEST_NDARRAYS_ALL:
|
65
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+
with self.subTest(im_type=im_type):
|
66
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+
cropper = RandScaleCrop(**input_param)
|
67
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+
cropper.set_random_state(seed=123)
|
68
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+
input_data = im_type(np.random.randint(0, 2, input_shape))
|
69
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+
result = cropper(input_data)
|
70
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+
self.assertTupleEqual(result.shape, expected_shape)
|
71
|
+
|
72
|
+
@parameterized.expand(TEST_SHAPES)
|
73
|
+
def test_pending_ops(self, input_param, input_shape, _):
|
74
|
+
self.crop_test_pending_ops(input_param, input_shape)
|
75
|
+
|
76
|
+
|
77
|
+
if __name__ == "__main__":
|
78
|
+
unittest.main()
|
@@ -0,0 +1,98 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.transforms import RandScaleCropd
|
20
|
+
from tests.croppers import CropTest
|
21
|
+
from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose
|
22
|
+
|
23
|
+
TEST_SHAPES = [
|
24
|
+
[{"keys": "img", "roi_scale": [1.0, 1.0, -1.0], "random_center": True}, (3, 3, 3, 4), (3, 3, 3, 4)],
|
25
|
+
[
|
26
|
+
# test `allow_missing_keys` with key "label"
|
27
|
+
{"keys": ["label", "img"], "roi_scale": [1.0, 1.0, 1.0], "random_center": False, "allow_missing_keys": True},
|
28
|
+
(3, 3, 3, 3),
|
29
|
+
(3, 3, 3, 3),
|
30
|
+
],
|
31
|
+
]
|
32
|
+
|
33
|
+
TEST_VALUES = [
|
34
|
+
[
|
35
|
+
{"keys": "img", "roi_scale": [0.6, 0.6], "random_center": False},
|
36
|
+
np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 1, 2, 1, 0], [0, 0, 0, 0, 0]]]),
|
37
|
+
]
|
38
|
+
]
|
39
|
+
|
40
|
+
TEST_RANDOM_SHAPES = [
|
41
|
+
[
|
42
|
+
{
|
43
|
+
"keys": "img",
|
44
|
+
"roi_scale": [0.75, 0.6, 0.5],
|
45
|
+
"max_roi_scale": [1.0, -1.0, 0.6],
|
46
|
+
"random_center": True,
|
47
|
+
"random_size": True,
|
48
|
+
},
|
49
|
+
(1, 4, 5, 6),
|
50
|
+
(1, 3, 4, 3),
|
51
|
+
],
|
52
|
+
[
|
53
|
+
{"keys": "img", "roi_scale": 0.6, "max_roi_scale": 0.8, "random_center": True, "random_size": True},
|
54
|
+
(1, 4, 5, 6),
|
55
|
+
(1, 3, 4, 4),
|
56
|
+
],
|
57
|
+
[
|
58
|
+
{"keys": "img", "roi_scale": 0.2, "max_roi_scale": 0.8, "random_center": True, "random_size": True},
|
59
|
+
(1, 4, 5, 6),
|
60
|
+
(1, 3, 2, 4),
|
61
|
+
],
|
62
|
+
]
|
63
|
+
|
64
|
+
|
65
|
+
class TestRandScaleCropd(CropTest):
|
66
|
+
Cropper = RandScaleCropd
|
67
|
+
|
68
|
+
@parameterized.expand(TEST_SHAPES)
|
69
|
+
def test_shape(self, input_param, input_shape, expected_shape):
|
70
|
+
self.crop_test(input_param, input_shape, expected_shape)
|
71
|
+
|
72
|
+
@parameterized.expand(TEST_VALUES)
|
73
|
+
def test_value(self, input_param, input_im):
|
74
|
+
for im_type in TEST_NDARRAYS_ALL:
|
75
|
+
with self.subTest(im_type=im_type):
|
76
|
+
cropper = self.Cropper(**input_param)
|
77
|
+
input_data = {"img": im_type(input_im)}
|
78
|
+
result = cropper(input_data)["img"]
|
79
|
+
roi = [(2 - i // 2, 2 + i - i // 2) for i in cropper.cropper._size]
|
80
|
+
assert_allclose(result, input_im[:, roi[0][0] : roi[0][1], roi[1][0] : roi[1][1]], type_test="tensor")
|
81
|
+
|
82
|
+
@parameterized.expand(TEST_RANDOM_SHAPES)
|
83
|
+
def test_random_shape(self, input_param, input_shape, expected_shape):
|
84
|
+
for im_type in TEST_NDARRAYS_ALL:
|
85
|
+
with self.subTest(im_type=im_type):
|
86
|
+
cropper = self.Cropper(**input_param)
|
87
|
+
cropper.set_random_state(seed=123)
|
88
|
+
input_data = {"img": im_type(np.random.randint(0, 2, input_shape))}
|
89
|
+
result = cropper(input_data)["img"]
|
90
|
+
self.assertTupleEqual(result.shape, expected_shape)
|
91
|
+
|
92
|
+
@parameterized.expand(TEST_SHAPES)
|
93
|
+
def test_pending_ops(self, input_param, input_shape, _):
|
94
|
+
self.crop_test_pending_ops(input_param, input_shape)
|
95
|
+
|
96
|
+
|
97
|
+
if __name__ == "__main__":
|
98
|
+
unittest.main()
|
@@ -0,0 +1,54 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.transforms import RandScaleIntensity
|
20
|
+
from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
|
21
|
+
|
22
|
+
|
23
|
+
class TestRandScaleIntensity(NumpyImageTestCase2D):
|
24
|
+
@parameterized.expand([[p] for p in TEST_NDARRAYS])
|
25
|
+
def test_value(self, p):
|
26
|
+
scaler = RandScaleIntensity(factors=0.5, prob=1.0)
|
27
|
+
scaler.set_random_state(seed=0)
|
28
|
+
im = p(self.imt)
|
29
|
+
result = scaler(im)
|
30
|
+
np.random.seed(0)
|
31
|
+
# simulate the randomize() of transform
|
32
|
+
np.random.random()
|
33
|
+
expected = p((self.imt * (1 + np.random.uniform(low=-0.5, high=0.5))).astype(np.float32))
|
34
|
+
assert_allclose(result, p(expected), rtol=1e-7, atol=0, type_test="tensor")
|
35
|
+
|
36
|
+
@parameterized.expand([[p] for p in TEST_NDARRAYS])
|
37
|
+
def test_channel_wise(self, p):
|
38
|
+
scaler = RandScaleIntensity(factors=0.5, channel_wise=True, prob=1.0)
|
39
|
+
scaler.set_random_state(seed=0)
|
40
|
+
im = p(self.imt)
|
41
|
+
result = scaler(im)
|
42
|
+
np.random.seed(0)
|
43
|
+
# simulate the randomize() of transform
|
44
|
+
np.random.random()
|
45
|
+
channel_num = self.imt.shape[0]
|
46
|
+
factor = [np.random.uniform(low=-0.5, high=0.5) for _ in range(channel_num)]
|
47
|
+
expected = p(
|
48
|
+
np.stack([np.asarray((self.imt[i]) * (1 + factor[i])) for i in range(channel_num)]).astype(np.float32)
|
49
|
+
)
|
50
|
+
assert_allclose(result, expected, atol=0, rtol=1e-5, type_test=False)
|
51
|
+
|
52
|
+
|
53
|
+
if __name__ == "__main__":
|
54
|
+
unittest.main()
|
@@ -0,0 +1,41 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.transforms import RandScaleIntensityFixedMean
|
20
|
+
from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
|
21
|
+
|
22
|
+
|
23
|
+
class TestRandScaleIntensity(NumpyImageTestCase2D):
|
24
|
+
@parameterized.expand([[p] for p in TEST_NDARRAYS])
|
25
|
+
def test_value(self, p):
|
26
|
+
scaler = RandScaleIntensityFixedMean(prob=1.0, factors=0.5)
|
27
|
+
scaler.set_random_state(seed=0)
|
28
|
+
im = p(self.imt)
|
29
|
+
result = scaler(im)
|
30
|
+
np.random.seed(0)
|
31
|
+
# simulate the randomize() of transform
|
32
|
+
np.random.random()
|
33
|
+
mn = im.mean()
|
34
|
+
im = im - mn
|
35
|
+
expected = (1 + np.random.uniform(low=-0.5, high=0.5)) * im
|
36
|
+
expected = expected + mn
|
37
|
+
assert_allclose(result, expected, type_test="tensor", atol=1e-7)
|
38
|
+
|
39
|
+
|
40
|
+
if __name__ == "__main__":
|
41
|
+
unittest.main()
|
@@ -0,0 +1,41 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
|
18
|
+
from monai.transforms import RandScaleIntensityFixedMeand
|
19
|
+
from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
|
20
|
+
|
21
|
+
|
22
|
+
class TestRandScaleIntensityFixedMeand(NumpyImageTestCase2D):
|
23
|
+
def test_value(self):
|
24
|
+
key = "img"
|
25
|
+
for p in TEST_NDARRAYS:
|
26
|
+
scaler = RandScaleIntensityFixedMeand(keys=[key], factors=0.5, prob=1.0)
|
27
|
+
scaler.set_random_state(seed=0)
|
28
|
+
result = scaler({key: p(self.imt)})
|
29
|
+
np.random.seed(0)
|
30
|
+
# simulate the randomize function of transform
|
31
|
+
np.random.random()
|
32
|
+
im = self.imt
|
33
|
+
mn = im.mean()
|
34
|
+
im = im - mn
|
35
|
+
expected = (1 + np.random.uniform(low=-0.5, high=0.5)) * im
|
36
|
+
expected = expected + mn
|
37
|
+
assert_allclose(result[key], p(expected), type_test="tensor", atol=1e-6)
|
38
|
+
|
39
|
+
|
40
|
+
if __name__ == "__main__":
|
41
|
+
unittest.main()
|
@@ -0,0 +1,53 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
|
18
|
+
from monai.transforms import RandScaleIntensityd
|
19
|
+
from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
|
20
|
+
|
21
|
+
|
22
|
+
class TestRandScaleIntensityd(NumpyImageTestCase2D):
|
23
|
+
def test_value(self):
|
24
|
+
key = "img"
|
25
|
+
for p in TEST_NDARRAYS:
|
26
|
+
scaler = RandScaleIntensityd(keys=[key], factors=0.5, prob=1.0)
|
27
|
+
scaler.set_random_state(seed=0)
|
28
|
+
result = scaler({key: p(self.imt)})
|
29
|
+
np.random.seed(0)
|
30
|
+
# simulate the randomize function of transform
|
31
|
+
np.random.random()
|
32
|
+
expected = (self.imt * (1 + np.random.uniform(low=-0.5, high=0.5))).astype(np.float32)
|
33
|
+
assert_allclose(result[key], p(expected), type_test="tensor")
|
34
|
+
|
35
|
+
def test_channel_wise(self):
|
36
|
+
key = "img"
|
37
|
+
for p in TEST_NDARRAYS:
|
38
|
+
scaler = RandScaleIntensityd(keys=[key], factors=0.5, prob=1.0, channel_wise=True)
|
39
|
+
scaler.set_random_state(seed=0)
|
40
|
+
result = scaler({key: p(self.imt)})
|
41
|
+
np.random.seed(0)
|
42
|
+
# simulate the randomize function of transform
|
43
|
+
np.random.random()
|
44
|
+
channel_num = self.imt.shape[0]
|
45
|
+
factor = [np.random.uniform(low=-0.5, high=0.5) for _ in range(channel_num)]
|
46
|
+
expected = p(
|
47
|
+
np.stack([np.asarray((self.imt[i]) * (1 + factor[i])) for i in range(channel_num)]).astype(np.float32)
|
48
|
+
)
|
49
|
+
assert_allclose(result[key], p(expected), type_test="tensor")
|
50
|
+
|
51
|
+
|
52
|
+
if __name__ == "__main__":
|
53
|
+
unittest.main()
|