monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
- tests/networks/nets/test_patch_gan_dicriminator.py +179 -0
- tests/networks/nets/test_quicknat.py +57 -0
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- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.transforms import DistanceTransformEDT, DistanceTransformEDTd
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from tests.test_utils import HAS_CUPY, assert_allclose, optional_import, skip_if_no_cuda
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momorphology, has_cucim = optional_import("cucim.core.operations.morphology")
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ndimage, has_ndimage = optional_import("scipy.ndimage")
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cp, _ = optional_import("cupy")
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TEST_CASES = [
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[
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np.array(
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([[0, 1, 1, 1, 1], [0, 0, 1, 1, 1], [0, 1, 1, 1, 1], [0, 1, 1, 1, 0], [0, 1, 1, 0, 0]],), dtype=np.float32
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),
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np.array(
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[
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[
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[0.0, 1.0, 1.4142, 2.2361, 3.0],
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[0.0, 0.0, 1.0, 2.0, 2.0],
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[0.0, 1.0, 1.4142, 1.4142, 1.0],
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[0.0, 1.0, 1.4142, 1.0, 0.0],
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[0.0, 1.0, 1.0, 0.0, 0.0],
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]
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]
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),
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],
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[ # Example 4D input to test channel-wise CuPy
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np.array(
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[[[[0, 1, 1, 1, 1], [0, 0, 1, 1, 1], [0, 1, 1, 1, 1], [0, 1, 1, 1, 0], [0, 1, 1, 0, 0]]]], dtype=np.float32
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),
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np.array(
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[
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[
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[
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[0.0, 1.0, 1.4142, 2.2361, 3.0],
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[0.0, 0.0, 1.0, 2.0, 2.0],
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[0.0, 1.0, 1.4142, 1.4142, 1.0],
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[0.0, 1.0, 1.4142, 1.0, 0.0],
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[0.0, 1.0, 1.0, 0.0, 0.0],
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]
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]
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]
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),
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],
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[
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np.array(
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[
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[
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[0.0, 1.0, 1.0, 1.0, 1.0],
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[0.0, 0.0, 1.0, 1.0, 1.0],
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[0.0, 1.0, 1.0, 1.0, 1.0],
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[0.0, 1.0, 1.0, 1.0, 0.0],
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[0.0, 1.0, 1.0, 0.0, 0.0],
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],
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[
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[0.0, 1.0, 1.0, 1.0, 1.0],
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[0.0, 0.0, 1.0, 1.0, 1.0],
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[0.0, 1.0, 1.0, 1.0, 1.0],
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[0.0, 1.0, 1.0, 1.0, 0.0],
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[0.0, 1.0, 1.0, 0.0, 0.0],
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],
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[
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[0.0, 1.0, 1.0, 1.0, 1.0],
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[0.0, 0.0, 1.0, 1.0, 1.0],
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[0.0, 1.0, 1.0, 1.0, 1.0],
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[0.0, 1.0, 1.0, 1.0, 0.0],
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[0.0, 1.0, 1.0, 0.0, 0.0],
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],
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],
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dtype=np.float32,
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),
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np.array(
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[
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[
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[0.0, 1.0, 1.4142135, 2.236068, 3.0],
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[0.0, 0.0, 1.0, 2.0, 2.0],
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[0.0, 1.0, 1.4142135, 1.4142135, 1.0],
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[0.0, 1.0, 1.4142135, 1.0, 0.0],
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[0.0, 1.0, 1.0, 0.0, 0.0],
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],
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[
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[0.0, 1.0, 1.4142135, 2.236068, 3.0],
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[0.0, 0.0, 1.0, 2.0, 2.0],
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[0.0, 1.0, 1.4142135, 1.4142135, 1.0],
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[0.0, 1.0, 1.4142135, 1.0, 0.0],
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[0.0, 1.0, 1.0, 0.0, 0.0],
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],
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[
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[0.0, 1.0, 1.4142135, 2.236068, 3.0],
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[0.0, 0.0, 1.0, 2.0, 2.0],
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[0.0, 1.0, 1.4142135, 1.4142135, 1.0],
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[0.0, 1.0, 1.4142135, 1.0, 0.0],
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[0.0, 1.0, 1.0, 0.0, 0.0],
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],
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],
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dtype=np.float32,
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),
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],
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]
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SAMPLING_TEST_CASES = [
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[
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2,
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np.array(
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([[0, 1, 1, 1, 1], [0, 0, 1, 1, 1], [0, 1, 1, 1, 1], [0, 1, 1, 1, 0], [0, 1, 1, 0, 0]],), dtype=np.float32
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),
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np.array(
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[
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[
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[0.0, 2.0, 2.828427, 4.472136, 6.0],
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[0.0, 0.0, 2.0, 4.0, 4.0],
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[0.0, 2.0, 2.828427, 2.828427, 2.0],
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[0.0, 2.0, 2.828427, 2.0, 0.0],
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[0.0, 2.0, 2.0, 0.0, 0.0],
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]
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]
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),
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]
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]
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RAISES_TEST_CASES = (
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[ # Example 4D input. Should raise under CuPy
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np.array(
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[[[[[0, 1, 1, 1, 1], [0, 0, 1, 1, 1], [0, 1, 1, 1, 1], [0, 1, 1, 1, 0], [0, 1, 1, 0, 0]]]]],
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dtype=np.float32,
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)
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],
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)
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class TestDistanceTransformEDT(unittest.TestCase):
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@parameterized.expand(TEST_CASES)
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def test_scipy_transform(self, input, expected_output):
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transform = DistanceTransformEDT()
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output = transform(input)
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assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
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@parameterized.expand(TEST_CASES)
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def test_scipy_transformd(self, input, expected_output):
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transform = DistanceTransformEDTd(keys=("to_transform",))
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data = {"to_transform": input}
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data_ = transform(data)
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output = data_["to_transform"]
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assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
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@parameterized.expand(SAMPLING_TEST_CASES)
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def test_scipy_sampling(self, sampling, input, expected_output):
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transform = DistanceTransformEDT(sampling=sampling)
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output = transform(input)
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assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
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@parameterized.expand(TEST_CASES)
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@skip_if_no_cuda
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@unittest.skipUnless(HAS_CUPY, "CuPy is required.")
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@unittest.skipUnless(momorphology, "cuCIM transforms are required.")
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def test_cucim_transform(self, input, expected_output):
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input_ = torch.tensor(input, device="cuda")
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transform = DistanceTransformEDT()
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output = transform(input_)
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assert_allclose(cp.asnumpy(output), cp.asnumpy(expected_output), atol=1e-4, rtol=1e-4, type_test=False)
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@parameterized.expand(SAMPLING_TEST_CASES)
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@skip_if_no_cuda
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@unittest.skipUnless(HAS_CUPY, "CuPy is required.")
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@unittest.skipUnless(momorphology, "cuCIM transforms are required.")
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def test_cucim_sampling(self, sampling, input, expected_output):
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input_ = torch.tensor(input, device="cuda")
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transform = DistanceTransformEDT(sampling=sampling)
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output = transform(input_)
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assert_allclose(cp.asnumpy(output), cp.asnumpy(expected_output), atol=1e-4, rtol=1e-4, type_test=False)
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@parameterized.expand(RAISES_TEST_CASES)
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@skip_if_no_cuda
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@unittest.skipUnless(HAS_CUPY, "CuPy is required.")
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@unittest.skipUnless(momorphology, "cuCIM transforms are required.")
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def test_cucim_raises(self, raises):
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"""Currently images of shape a certain shape are supported. This test checks for the according error message"""
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input_ = torch.tensor(raises, device="cuda")
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transform = DistanceTransformEDT()
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with self.assertRaises(RuntimeError):
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transform(input_)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from parameterized import parameterized
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from monai.transforms import DivisiblePad
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from monai.utils.enums import NumpyPadMode, PytorchPadMode
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from tests.padders import PadTest
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TESTS = []
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# pad first dim to be divisible by 7, the second unchanged.
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TESTS.append([{"k": (7, -1)}, (3, 8, 7), (3, 14, 7)])
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# pad all dimensions to be divisible by 5
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TESTS.append([{"k": 5, "method": "end"}, (3, 10, 5, 17), (3, 10, 5, 20)])
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class TestDivisiblePad(PadTest):
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Padder = DivisiblePad
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@parameterized.expand(TESTS)
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def test_pad(self, input_param, input_shape, expected_shape):
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modes = ["constant", NumpyPadMode.CONSTANT, PytorchPadMode.CONSTANT]
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self.pad_test(input_param, input_shape, expected_shape, modes)
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def test_pad_kwargs(self):
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kwargs = {"k": 5, "method": "end"}
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unchanged_slices = [slice(None), slice(None, 8), slice(None, 4)]
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self.pad_test_kwargs(unchanged_slices, **kwargs)
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@parameterized.expand(TESTS)
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def test_pending_ops(self, input_param, input_shape, _):
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self.pad_test_pending_ops(input_param, input_shape)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from parameterized import parameterized
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from monai.transforms import DivisiblePadd
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from monai.utils.enums import NumpyPadMode, PytorchPadMode
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from tests.padders import PadTest
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TESTS = [
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[{"keys": "img", "k": [4, 3, 2]}, (3, 8, 8, 4), (3, 8, 9, 4)],
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[{"keys": "img", "k": 7, "method": "end"}, (3, 8, 7), (3, 14, 7)],
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]
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class TestDivisiblePadd(PadTest):
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Padder = DivisiblePadd
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@parameterized.expand(TESTS)
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def test_pad(self, input_param, input_shape, expected_shape):
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modes = ["constant", NumpyPadMode.CONSTANT, PytorchPadMode.CONSTANT, "edge", NumpyPadMode.EDGE]
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self.pad_test(input_param, input_shape, expected_shape, modes)
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@parameterized.expand(TESTS)
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def test_pending_ops(self, input_param, input_shape, _):
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self.pad_test_pending_ops(input_param, input_shape)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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12
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from __future__ import annotations
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13
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+
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14
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+
import os
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15
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+
import tempfile
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16
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import unittest
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17
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+
|
18
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+
import nibabel as nib
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+
import numpy as np
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+
import torch
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21
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+
from parameterized import parameterized
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22
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from PIL import Image
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23
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+
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24
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+
from monai.data.meta_tensor import MetaTensor
|
25
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+
from monai.transforms import EnsureChannelFirst, LoadImage
|
26
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+
from monai.utils import optional_import
|
27
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+
|
28
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+
itk, has_itk = optional_import("itk", allow_namespace_pkg=True)
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29
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+
ITKReader, _ = optional_import("monai.data", name="ITKReader", as_type="decorator")
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30
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+
|
31
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+
TEST_CASE_1 = [{}, ["test_image.nii.gz"], None]
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32
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+
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33
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+
TEST_CASE_2 = [{}, ["test_image.nii.gz"], -1]
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34
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+
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35
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TEST_CASE_3 = [{}, ["test_image.nii.gz", "test_image2.nii.gz", "test_image3.nii.gz"], None]
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+
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TEST_CASE_4 = [{"reader": ITKReader() if has_itk else "itkreader"}, ["test_image.nii.gz"], None]
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+
|
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+
TEST_CASE_5 = [{"reader": ITKReader() if has_itk else "itkreader"}, ["test_image.nii.gz"], -1]
|
40
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+
|
41
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+
TEST_CASE_6 = [
|
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{"reader": ITKReader() if has_itk else "itkreader"},
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["test_image.nii.gz", "test_image2.nii.gz", "test_image3.nii.gz"],
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None,
|
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+
]
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+
|
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+
|
48
|
+
class TestEnsureChannelFirst(unittest.TestCase):
|
49
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+
|
50
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+
@parameterized.expand([TEST_CASE_1, TEST_CASE_2, TEST_CASE_3, TEST_CASE_4, TEST_CASE_5, TEST_CASE_6])
|
51
|
+
@unittest.skipUnless(has_itk, "itk not installed")
|
52
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+
def test_load_nifti(self, input_param, filenames, original_channel_dim):
|
53
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+
# if original_channel_dim is None
|
54
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+
test_image = np.random.rand(8, 8, 8)
|
55
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+
|
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|
+
if original_channel_dim == -1:
|
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+
test_image = np.random.rand(8, 8, 8, 1)
|
58
|
+
|
59
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
60
|
+
for i, name in enumerate(filenames):
|
61
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+
filenames[i] = os.path.join(tempdir, name)
|
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|
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nib.save(nib.Nifti1Image(test_image, np.eye(4)), filenames[i])
|
63
|
+
|
64
|
+
result = LoadImage(image_only=True, **input_param)(filenames)
|
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+
result = EnsureChannelFirst()(result)
|
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+
self.assertEqual(result.shape[0], len(filenames))
|
67
|
+
|
68
|
+
@unittest.skipUnless(has_itk, "itk not installed")
|
69
|
+
def test_itk_dicom_series_reader(self):
|
70
|
+
filenames = "tests/testing_data/CT_DICOM"
|
71
|
+
itk.ProcessObject.SetGlobalWarningDisplay(False)
|
72
|
+
result = LoadImage(image_only=True, reader=ITKReader(pixel_type=itk.UC))(filenames)
|
73
|
+
result = EnsureChannelFirst()(result)
|
74
|
+
self.assertEqual(result.shape[0], 1)
|
75
|
+
|
76
|
+
def test_load_png(self):
|
77
|
+
spatial_size = (6, 6, 3)
|
78
|
+
test_image = np.random.randint(0, 6, size=spatial_size)
|
79
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
80
|
+
filename = os.path.join(tempdir, "test_image.png")
|
81
|
+
Image.fromarray(test_image.astype("uint8")).save(filename)
|
82
|
+
result = LoadImage(image_only=True)(filename)
|
83
|
+
result = EnsureChannelFirst()(result)
|
84
|
+
self.assertEqual(result.shape[0], 3)
|
85
|
+
result = EnsureChannelFirst(channel_dim=-1)(result)
|
86
|
+
self.assertEqual(result.shape, (6, 3, 6))
|
87
|
+
|
88
|
+
def test_check(self):
|
89
|
+
im = torch.zeros(1, 2, 3)
|
90
|
+
im_nodim = MetaTensor(im, meta={"original_channel_dim": None})
|
91
|
+
|
92
|
+
with self.assertRaises(ValueError): # not MetaTensor
|
93
|
+
EnsureChannelFirst(channel_dim=None)(im)
|
94
|
+
with self.assertRaises(ValueError): # no meta
|
95
|
+
EnsureChannelFirst(channel_dim=None)(MetaTensor(im))
|
96
|
+
with self.assertRaises(ValueError): # no meta channel
|
97
|
+
EnsureChannelFirst()(im_nodim)
|
98
|
+
|
99
|
+
with self.assertWarns(Warning):
|
100
|
+
EnsureChannelFirst(strict_check=False, channel_dim=None)(im)
|
101
|
+
|
102
|
+
with self.assertWarns(Warning):
|
103
|
+
EnsureChannelFirst(strict_check=False, channel_dim=None)(im_nodim)
|
104
|
+
|
105
|
+
def test_default_channel_first(self):
|
106
|
+
im = torch.rand(4, 4)
|
107
|
+
result = EnsureChannelFirst(channel_dim="no_channel")(im)
|
108
|
+
|
109
|
+
self.assertEqual(result.shape, (1, 4, 4))
|
110
|
+
|
111
|
+
|
112
|
+
if __name__ == "__main__":
|
113
|
+
unittest.main()
|
@@ -0,0 +1,85 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import os
|
15
|
+
import tempfile
|
16
|
+
import unittest
|
17
|
+
|
18
|
+
import nibabel as nib
|
19
|
+
import numpy as np
|
20
|
+
import torch
|
21
|
+
from parameterized import parameterized
|
22
|
+
from PIL import Image
|
23
|
+
|
24
|
+
from monai.data.meta_tensor import MetaTensor
|
25
|
+
from monai.transforms import EnsureChannelFirstd, LoadImaged
|
26
|
+
|
27
|
+
TEST_CASE_1 = [{"keys": "img"}, ["test_image.nii.gz"], None]
|
28
|
+
|
29
|
+
TEST_CASE_2 = [{"keys": "img"}, ["test_image.nii.gz"], -1]
|
30
|
+
|
31
|
+
TEST_CASE_3 = [{"keys": "img"}, ["test_image.nii.gz", "test_image2.nii.gz", "test_image3.nii.gz"], None]
|
32
|
+
|
33
|
+
|
34
|
+
class TestEnsureChannelFirstd(unittest.TestCase):
|
35
|
+
|
36
|
+
@parameterized.expand([TEST_CASE_1, TEST_CASE_2, TEST_CASE_3])
|
37
|
+
def test_load_nifti(self, input_param, filenames, original_channel_dim):
|
38
|
+
# if original_channel_dim is None:
|
39
|
+
test_image = np.random.rand(8, 8, 8)
|
40
|
+
|
41
|
+
if original_channel_dim == -1:
|
42
|
+
test_image = np.random.rand(8, 8, 8, 1)
|
43
|
+
|
44
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
45
|
+
for i, name in enumerate(filenames):
|
46
|
+
filenames[i] = os.path.join(tempdir, name)
|
47
|
+
nib.save(nib.Nifti1Image(test_image, np.eye(4)), filenames[i])
|
48
|
+
result = LoadImaged(**input_param)({"img": filenames})
|
49
|
+
result = EnsureChannelFirstd(**input_param)(result)
|
50
|
+
self.assertEqual(result["img"].shape[0], len(filenames))
|
51
|
+
|
52
|
+
def test_load_png(self):
|
53
|
+
spatial_size = (6, 6, 3)
|
54
|
+
test_image = np.random.randint(0, 256, size=spatial_size)
|
55
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
56
|
+
filename = os.path.join(tempdir, "test_image.png")
|
57
|
+
Image.fromarray(test_image.astype("uint8")).save(filename)
|
58
|
+
result = LoadImaged(keys="img")({"img": filename})
|
59
|
+
result = EnsureChannelFirstd(keys="img")(result)
|
60
|
+
self.assertEqual(result["img"].shape[0], 3)
|
61
|
+
|
62
|
+
def test_exceptions(self):
|
63
|
+
im = torch.zeros((1, 2, 3))
|
64
|
+
im_nodim = MetaTensor(im, meta={"original_channel_dim": None})
|
65
|
+
|
66
|
+
with self.assertRaises(ValueError): # no meta
|
67
|
+
EnsureChannelFirstd("img", channel_dim=None)({"img": im})
|
68
|
+
with self.assertRaises(ValueError): # no meta channel
|
69
|
+
EnsureChannelFirstd("img", channel_dim=None)({"img": im_nodim})
|
70
|
+
|
71
|
+
with self.assertWarns(Warning):
|
72
|
+
EnsureChannelFirstd("img", strict_check=False, channel_dim=None)({"img": im})
|
73
|
+
|
74
|
+
with self.assertWarns(Warning):
|
75
|
+
EnsureChannelFirstd("img", strict_check=False, channel_dim=None)({"img": im_nodim})
|
76
|
+
|
77
|
+
def test_default_channel_first(self):
|
78
|
+
im = torch.rand(4, 4)
|
79
|
+
result = EnsureChannelFirstd("img", channel_dim="no_channel")({"img": im})
|
80
|
+
|
81
|
+
self.assertEqual(result["img"].shape, (1, 4, 4))
|
82
|
+
|
83
|
+
|
84
|
+
if __name__ == "__main__":
|
85
|
+
unittest.main()
|
@@ -0,0 +1,94 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
import torch
|
18
|
+
|
19
|
+
from monai.data import MetaTensor
|
20
|
+
from monai.transforms import EnsureType
|
21
|
+
from tests.test_utils import assert_allclose
|
22
|
+
|
23
|
+
|
24
|
+
class TestEnsureType(unittest.TestCase):
|
25
|
+
def test_array_input(self):
|
26
|
+
test_datas = [np.array([[1, 2], [3, 4]]), torch.as_tensor([[1, 2], [3, 4]])]
|
27
|
+
if torch.cuda.is_available():
|
28
|
+
test_datas.append(test_datas[-1].cuda())
|
29
|
+
for test_data in test_datas:
|
30
|
+
for dtype in ("tensor", "NUMPY"):
|
31
|
+
result = EnsureType(dtype, dtype=np.float32 if dtype == "NUMPY" else None, device="cpu")(test_data)
|
32
|
+
if dtype == "NUMPY":
|
33
|
+
self.assertTrue(result.dtype == np.float32)
|
34
|
+
self.assertTrue(isinstance(result, torch.Tensor if dtype == "tensor" else np.ndarray))
|
35
|
+
assert_allclose(result, test_data, type_test=False)
|
36
|
+
self.assertTupleEqual(result.shape, (2, 2))
|
37
|
+
|
38
|
+
def test_single_input(self):
|
39
|
+
test_datas = [5, 5.0, False, np.asarray(5), torch.tensor(5)]
|
40
|
+
if torch.cuda.is_available():
|
41
|
+
test_datas.append(test_datas[-1].cuda())
|
42
|
+
for test_data in test_datas:
|
43
|
+
for dtype in ("tensor", "numpy"):
|
44
|
+
result = EnsureType(data_type=dtype, device="cpu")(test_data)
|
45
|
+
self.assertTrue(isinstance(result, torch.Tensor if dtype == "tensor" else np.ndarray))
|
46
|
+
if isinstance(test_data, bool):
|
47
|
+
self.assertFalse(result)
|
48
|
+
else:
|
49
|
+
assert_allclose(result, test_data, type_test=False)
|
50
|
+
self.assertEqual(result.ndim, 0)
|
51
|
+
|
52
|
+
def test_string(self):
|
53
|
+
for dtype in ("tensor", "numpy"):
|
54
|
+
# string input
|
55
|
+
result = EnsureType(data_type=dtype)("test_string")
|
56
|
+
self.assertTrue(isinstance(result, str))
|
57
|
+
self.assertEqual(result, "test_string")
|
58
|
+
# numpy array of string
|
59
|
+
result = EnsureType(data_type=dtype)(np.array(["test_string0", "test_string1"]))
|
60
|
+
self.assertTrue(isinstance(result, np.ndarray))
|
61
|
+
self.assertEqual(result[1], "test_string1")
|
62
|
+
|
63
|
+
def test_list_tuple(self):
|
64
|
+
for dtype in ("tensor", "numpy"):
|
65
|
+
result = EnsureType(data_type=dtype, wrap_sequence=False, track_meta=True)([[1, 2], [3, 4]])
|
66
|
+
self.assertTrue(isinstance(result, list))
|
67
|
+
self.assertTrue(isinstance(result[0][1], MetaTensor if dtype == "tensor" else np.ndarray))
|
68
|
+
assert_allclose(result[1][0], torch.as_tensor(3), type_test=False)
|
69
|
+
# tuple of numpy arrays
|
70
|
+
result = EnsureType(data_type=dtype, wrap_sequence=False)((np.array([1, 2]), np.array([3, 4])))
|
71
|
+
self.assertTrue(isinstance(result, tuple))
|
72
|
+
self.assertTrue(isinstance(result[0], torch.Tensor if dtype == "tensor" else np.ndarray))
|
73
|
+
assert_allclose(result[1], torch.as_tensor([3, 4]), type_test=False)
|
74
|
+
|
75
|
+
def test_dict(self):
|
76
|
+
# simulate complicated input data
|
77
|
+
test_data = {
|
78
|
+
"img": np.array([1.0, 2.0], dtype=np.float32),
|
79
|
+
"meta": {"dims": 3, "size": np.array([1, 2, 3]), "path": "temp/test"},
|
80
|
+
"extra": None,
|
81
|
+
}
|
82
|
+
for dtype in ("tensor", "numpy"):
|
83
|
+
result = EnsureType(data_type=dtype, track_meta=False)(test_data)
|
84
|
+
self.assertTrue(isinstance(result, dict))
|
85
|
+
self.assertTrue(isinstance(result["img"], torch.Tensor if dtype == "tensor" else np.ndarray))
|
86
|
+
assert_allclose(result["img"], torch.as_tensor([1.0, 2.0]), type_test=False)
|
87
|
+
self.assertTrue(isinstance(result["meta"]["size"], torch.Tensor if dtype == "tensor" else np.ndarray))
|
88
|
+
assert_allclose(result["meta"]["size"], torch.as_tensor([1, 2, 3]), type_test=False)
|
89
|
+
self.assertEqual(result["meta"]["path"], "temp/test")
|
90
|
+
self.assertEqual(result["extra"], None)
|
91
|
+
|
92
|
+
|
93
|
+
if __name__ == "__main__":
|
94
|
+
unittest.main()
|