monai-weekly 1.5.dev2505__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl

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Files changed (779) hide show
  1. monai/__init__.py +1 -1
  2. monai/_version.py +3 -3
  3. monai/apps/auto3dseg/transforms.py +1 -4
  4. monai/data/meta_tensor.py +5 -0
  5. monai/data/utils.py +6 -13
  6. monai/inferers/utils.py +1 -2
  7. monai/losses/dice.py +2 -14
  8. monai/losses/ds_loss.py +1 -3
  9. monai/networks/layers/simplelayers.py +2 -14
  10. monai/networks/utils.py +4 -16
  11. monai/transforms/compose.py +28 -11
  12. monai/transforms/croppad/array.py +1 -6
  13. monai/transforms/io/array.py +0 -1
  14. monai/transforms/transform.py +15 -6
  15. monai/transforms/utils.py +1 -2
  16. monai/utils/jupyter_utils.py +1 -1
  17. monai/utils/tf32.py +0 -10
  18. monai/visualize/class_activation_maps.py +5 -8
  19. monai/visualize/img2tensorboard.py +2 -2
  20. {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
  21. monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
  22. {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
  23. tests/apps/__init__.py +10 -0
  24. tests/apps/deepedit/__init__.py +10 -0
  25. tests/apps/deepedit/test_deepedit_transforms.py +314 -0
  26. tests/apps/deepgrow/__init__.py +10 -0
  27. tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
  28. tests/apps/deepgrow/transforms/__init__.py +10 -0
  29. tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
  30. tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
  31. tests/apps/detection/__init__.py +10 -0
  32. tests/apps/detection/metrics/__init__.py +10 -0
  33. tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
  34. tests/apps/detection/networks/__init__.py +10 -0
  35. tests/apps/detection/networks/test_retinanet.py +210 -0
  36. tests/apps/detection/networks/test_retinanet_detector.py +203 -0
  37. tests/apps/detection/test_box_transform.py +370 -0
  38. tests/apps/detection/utils/__init__.py +10 -0
  39. tests/apps/detection/utils/test_anchor_box.py +88 -0
  40. tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
  41. tests/apps/detection/utils/test_box_coder.py +43 -0
  42. tests/apps/detection/utils/test_detector_boxselector.py +67 -0
  43. tests/apps/detection/utils/test_detector_utils.py +96 -0
  44. tests/apps/detection/utils/test_hardnegsampler.py +54 -0
  45. tests/apps/nuclick/__init__.py +10 -0
  46. tests/apps/nuclick/test_nuclick_transforms.py +259 -0
  47. tests/apps/pathology/__init__.py +10 -0
  48. tests/apps/pathology/handlers/__init__.py +10 -0
  49. tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
  50. tests/apps/pathology/test_lesion_froc.py +333 -0
  51. tests/apps/pathology/test_pathology_prob_nms.py +55 -0
  52. tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
  53. tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
  54. tests/apps/pathology/transforms/__init__.py +10 -0
  55. tests/apps/pathology/transforms/post/__init__.py +10 -0
  56. tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
  57. tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
  58. tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
  59. tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
  60. tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
  61. tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
  62. tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
  63. tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
  64. tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
  65. tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
  66. tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
  67. tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
  68. tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
  69. tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
  70. tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
  71. tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
  72. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
  73. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
  74. tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
  75. tests/apps/pathology/transforms/post/test_watershed.py +60 -0
  76. tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
  77. tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
  78. tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
  79. tests/apps/reconstruction/__init__.py +10 -0
  80. tests/apps/reconstruction/nets/__init__.py +10 -0
  81. tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
  82. tests/apps/reconstruction/test_complex_utils.py +77 -0
  83. tests/apps/reconstruction/test_fastmri_reader.py +82 -0
  84. tests/apps/reconstruction/test_mri_utils.py +37 -0
  85. tests/apps/reconstruction/transforms/__init__.py +10 -0
  86. tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
  87. tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
  88. tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
  89. tests/apps/test_auto3dseg_bundlegen.py +156 -0
  90. tests/apps/test_check_hash.py +53 -0
  91. tests/apps/test_cross_validation.py +74 -0
  92. tests/apps/test_decathlondataset.py +93 -0
  93. tests/apps/test_download_and_extract.py +70 -0
  94. tests/apps/test_download_url_yandex.py +45 -0
  95. tests/apps/test_mednistdataset.py +72 -0
  96. tests/apps/test_mmar_download.py +154 -0
  97. tests/apps/test_tciadataset.py +123 -0
  98. tests/apps/vista3d/__init__.py +10 -0
  99. tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
  100. tests/apps/vista3d/test_vista3d_sampler.py +100 -0
  101. tests/apps/vista3d/test_vista3d_transforms.py +94 -0
  102. tests/bundle/__init__.py +10 -0
  103. tests/bundle/test_bundle_ckpt_export.py +107 -0
  104. tests/bundle/test_bundle_download.py +435 -0
  105. tests/bundle/test_bundle_get_data.py +94 -0
  106. tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
  107. tests/bundle/test_bundle_trt_export.py +147 -0
  108. tests/bundle/test_bundle_utils.py +149 -0
  109. tests/bundle/test_bundle_verify_metadata.py +66 -0
  110. tests/bundle/test_bundle_verify_net.py +76 -0
  111. tests/bundle/test_bundle_workflow.py +272 -0
  112. tests/bundle/test_component_locator.py +38 -0
  113. tests/bundle/test_config_item.py +138 -0
  114. tests/bundle/test_config_parser.py +392 -0
  115. tests/bundle/test_reference_resolver.py +114 -0
  116. tests/config/__init__.py +10 -0
  117. tests/config/test_cv2_dist.py +53 -0
  118. tests/engines/__init__.py +10 -0
  119. tests/engines/test_ensemble_evaluator.py +94 -0
  120. tests/engines/test_prepare_batch_default.py +76 -0
  121. tests/engines/test_prepare_batch_default_dist.py +76 -0
  122. tests/engines/test_prepare_batch_diffusion.py +104 -0
  123. tests/engines/test_prepare_batch_extra_input.py +80 -0
  124. tests/fl/__init__.py +10 -0
  125. tests/fl/monai_algo/__init__.py +10 -0
  126. tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
  127. tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
  128. tests/fl/test_fl_monai_algo_stats.py +81 -0
  129. tests/fl/utils/__init__.py +10 -0
  130. tests/fl/utils/test_fl_exchange_object.py +63 -0
  131. tests/handlers/__init__.py +10 -0
  132. tests/handlers/test_handler_checkpoint_loader.py +182 -0
  133. tests/handlers/test_handler_checkpoint_saver.py +233 -0
  134. tests/handlers/test_handler_classification_saver.py +64 -0
  135. tests/handlers/test_handler_classification_saver_dist.py +77 -0
  136. tests/handlers/test_handler_clearml_image.py +65 -0
  137. tests/handlers/test_handler_clearml_stats.py +65 -0
  138. tests/handlers/test_handler_confusion_matrix.py +104 -0
  139. tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
  140. tests/handlers/test_handler_decollate_batch.py +66 -0
  141. tests/handlers/test_handler_early_stop.py +68 -0
  142. tests/handlers/test_handler_garbage_collector.py +73 -0
  143. tests/handlers/test_handler_hausdorff_distance.py +111 -0
  144. tests/handlers/test_handler_ignite_metric.py +191 -0
  145. tests/handlers/test_handler_lr_scheduler.py +94 -0
  146. tests/handlers/test_handler_mean_dice.py +98 -0
  147. tests/handlers/test_handler_mean_iou.py +76 -0
  148. tests/handlers/test_handler_metrics_reloaded.py +149 -0
  149. tests/handlers/test_handler_metrics_saver.py +89 -0
  150. tests/handlers/test_handler_metrics_saver_dist.py +120 -0
  151. tests/handlers/test_handler_mlflow.py +296 -0
  152. tests/handlers/test_handler_nvtx.py +93 -0
  153. tests/handlers/test_handler_panoptic_quality.py +89 -0
  154. tests/handlers/test_handler_parameter_scheduler.py +136 -0
  155. tests/handlers/test_handler_post_processing.py +74 -0
  156. tests/handlers/test_handler_prob_map_producer.py +111 -0
  157. tests/handlers/test_handler_regression_metrics.py +160 -0
  158. tests/handlers/test_handler_regression_metrics_dist.py +245 -0
  159. tests/handlers/test_handler_rocauc.py +48 -0
  160. tests/handlers/test_handler_rocauc_dist.py +54 -0
  161. tests/handlers/test_handler_stats.py +281 -0
  162. tests/handlers/test_handler_surface_distance.py +113 -0
  163. tests/handlers/test_handler_tb_image.py +61 -0
  164. tests/handlers/test_handler_tb_stats.py +166 -0
  165. tests/handlers/test_handler_validation.py +59 -0
  166. tests/handlers/test_trt_compile.py +145 -0
  167. tests/handlers/test_write_metrics_reports.py +68 -0
  168. tests/inferers/__init__.py +10 -0
  169. tests/inferers/test_avg_merger.py +179 -0
  170. tests/inferers/test_controlnet_inferers.py +1310 -0
  171. tests/inferers/test_diffusion_inferer.py +236 -0
  172. tests/inferers/test_latent_diffusion_inferer.py +824 -0
  173. tests/inferers/test_patch_inferer.py +309 -0
  174. tests/inferers/test_saliency_inferer.py +55 -0
  175. tests/inferers/test_slice_inferer.py +57 -0
  176. tests/inferers/test_sliding_window_inference.py +377 -0
  177. tests/inferers/test_sliding_window_splitter.py +284 -0
  178. tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
  179. tests/inferers/test_zarr_avg_merger.py +326 -0
  180. tests/integration/__init__.py +10 -0
  181. tests/integration/test_auto3dseg_ensemble.py +211 -0
  182. tests/integration/test_auto3dseg_hpo.py +189 -0
  183. tests/integration/test_deepedit_interaction.py +122 -0
  184. tests/integration/test_downsample_block.py +50 -0
  185. tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
  186. tests/integration/test_integration_autorunner.py +201 -0
  187. tests/integration/test_integration_bundle_run.py +240 -0
  188. tests/integration/test_integration_classification_2d.py +282 -0
  189. tests/integration/test_integration_determinism.py +95 -0
  190. tests/integration/test_integration_fast_train.py +231 -0
  191. tests/integration/test_integration_gpu_customization.py +159 -0
  192. tests/integration/test_integration_lazy_samples.py +219 -0
  193. tests/integration/test_integration_nnunetv2_runner.py +96 -0
  194. tests/integration/test_integration_segmentation_3d.py +304 -0
  195. tests/integration/test_integration_sliding_window.py +100 -0
  196. tests/integration/test_integration_stn.py +133 -0
  197. tests/integration/test_integration_unet_2d.py +67 -0
  198. tests/integration/test_integration_workers.py +61 -0
  199. tests/integration/test_integration_workflows.py +365 -0
  200. tests/integration/test_integration_workflows_adversarial.py +173 -0
  201. tests/integration/test_integration_workflows_gan.py +158 -0
  202. tests/integration/test_loader_semaphore.py +48 -0
  203. tests/integration/test_mapping_filed.py +122 -0
  204. tests/integration/test_meta_affine.py +183 -0
  205. tests/integration/test_metatensor_integration.py +114 -0
  206. tests/integration/test_module_list.py +76 -0
  207. tests/integration/test_one_of.py +283 -0
  208. tests/integration/test_pad_collation.py +124 -0
  209. tests/integration/test_reg_loss_integration.py +107 -0
  210. tests/integration/test_retinanet_predict_utils.py +154 -0
  211. tests/integration/test_seg_loss_integration.py +159 -0
  212. tests/integration/test_spatial_combine_transforms.py +185 -0
  213. tests/integration/test_testtimeaugmentation.py +186 -0
  214. tests/integration/test_vis_gradbased.py +69 -0
  215. tests/integration/test_vista3d_utils.py +159 -0
  216. tests/losses/__init__.py +10 -0
  217. tests/losses/deform/__init__.py +10 -0
  218. tests/losses/deform/test_bending_energy.py +88 -0
  219. tests/losses/deform/test_diffusion_loss.py +117 -0
  220. tests/losses/image_dissimilarity/__init__.py +10 -0
  221. tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
  222. tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
  223. tests/losses/test_adversarial_loss.py +94 -0
  224. tests/losses/test_barlow_twins_loss.py +109 -0
  225. tests/losses/test_cldice_loss.py +51 -0
  226. tests/losses/test_contrastive_loss.py +86 -0
  227. tests/losses/test_dice_ce_loss.py +123 -0
  228. tests/losses/test_dice_focal_loss.py +124 -0
  229. tests/losses/test_dice_loss.py +227 -0
  230. tests/losses/test_ds_loss.py +189 -0
  231. tests/losses/test_focal_loss.py +379 -0
  232. tests/losses/test_generalized_dice_focal_loss.py +85 -0
  233. tests/losses/test_generalized_dice_loss.py +221 -0
  234. tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
  235. tests/losses/test_giou_loss.py +62 -0
  236. tests/losses/test_hausdorff_loss.py +264 -0
  237. tests/losses/test_masked_dice_loss.py +152 -0
  238. tests/losses/test_masked_loss.py +87 -0
  239. tests/losses/test_multi_scale.py +86 -0
  240. tests/losses/test_nacl_loss.py +167 -0
  241. tests/losses/test_perceptual_loss.py +122 -0
  242. tests/losses/test_spectral_loss.py +86 -0
  243. tests/losses/test_ssim_loss.py +59 -0
  244. tests/losses/test_sure_loss.py +72 -0
  245. tests/losses/test_tversky_loss.py +198 -0
  246. tests/losses/test_unified_focal_loss.py +66 -0
  247. tests/metrics/__init__.py +10 -0
  248. tests/metrics/test_compute_confusion_matrix.py +294 -0
  249. tests/metrics/test_compute_f_beta.py +80 -0
  250. tests/metrics/test_compute_fid_metric.py +40 -0
  251. tests/metrics/test_compute_froc.py +143 -0
  252. tests/metrics/test_compute_generalized_dice.py +240 -0
  253. tests/metrics/test_compute_meandice.py +306 -0
  254. tests/metrics/test_compute_meaniou.py +223 -0
  255. tests/metrics/test_compute_mmd_metric.py +56 -0
  256. tests/metrics/test_compute_multiscalessim_metric.py +83 -0
  257. tests/metrics/test_compute_panoptic_quality.py +113 -0
  258. tests/metrics/test_compute_regression_metrics.py +196 -0
  259. tests/metrics/test_compute_roc_auc.py +155 -0
  260. tests/metrics/test_compute_variance.py +147 -0
  261. tests/metrics/test_cumulative.py +63 -0
  262. tests/metrics/test_cumulative_average.py +74 -0
  263. tests/metrics/test_cumulative_average_dist.py +48 -0
  264. tests/metrics/test_hausdorff_distance.py +209 -0
  265. tests/metrics/test_label_quality_score.py +134 -0
  266. tests/metrics/test_loss_metric.py +57 -0
  267. tests/metrics/test_metrics_reloaded.py +96 -0
  268. tests/metrics/test_ssim_metric.py +78 -0
  269. tests/metrics/test_surface_dice.py +416 -0
  270. tests/metrics/test_surface_distance.py +186 -0
  271. tests/networks/__init__.py +10 -0
  272. tests/networks/blocks/__init__.py +10 -0
  273. tests/networks/blocks/dints_block/__init__.py +10 -0
  274. tests/networks/blocks/dints_block/test_acn_block.py +41 -0
  275. tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
  276. tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
  277. tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
  278. tests/networks/blocks/test_adn.py +86 -0
  279. tests/networks/blocks/test_convolutions.py +156 -0
  280. tests/networks/blocks/test_crf_cpu.py +513 -0
  281. tests/networks/blocks/test_crf_cuda.py +528 -0
  282. tests/networks/blocks/test_crossattention.py +185 -0
  283. tests/networks/blocks/test_denseblock.py +105 -0
  284. tests/networks/blocks/test_dynunet_block.py +116 -0
  285. tests/networks/blocks/test_fpn_block.py +88 -0
  286. tests/networks/blocks/test_localnet_block.py +121 -0
  287. tests/networks/blocks/test_mlp.py +78 -0
  288. tests/networks/blocks/test_patchembedding.py +212 -0
  289. tests/networks/blocks/test_regunet_block.py +103 -0
  290. tests/networks/blocks/test_se_block.py +85 -0
  291. tests/networks/blocks/test_se_blocks.py +78 -0
  292. tests/networks/blocks/test_segresnet_block.py +57 -0
  293. tests/networks/blocks/test_selfattention.py +232 -0
  294. tests/networks/blocks/test_simple_aspp.py +87 -0
  295. tests/networks/blocks/test_spatialattention.py +55 -0
  296. tests/networks/blocks/test_subpixel_upsample.py +87 -0
  297. tests/networks/blocks/test_text_encoding.py +49 -0
  298. tests/networks/blocks/test_transformerblock.py +90 -0
  299. tests/networks/blocks/test_unetr_block.py +158 -0
  300. tests/networks/blocks/test_upsample_block.py +134 -0
  301. tests/networks/blocks/warp/__init__.py +10 -0
  302. tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
  303. tests/networks/blocks/warp/test_warp.py +250 -0
  304. tests/networks/layers/__init__.py +10 -0
  305. tests/networks/layers/filtering/__init__.py +10 -0
  306. tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
  307. tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
  308. tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
  309. tests/networks/layers/filtering/test_phl_cpu.py +259 -0
  310. tests/networks/layers/filtering/test_phl_cuda.py +167 -0
  311. tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
  312. tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
  313. tests/networks/layers/test_affine_transform.py +385 -0
  314. tests/networks/layers/test_apply_filter.py +89 -0
  315. tests/networks/layers/test_channel_pad.py +51 -0
  316. tests/networks/layers/test_conjugate_gradient.py +56 -0
  317. tests/networks/layers/test_drop_path.py +46 -0
  318. tests/networks/layers/test_gaussian.py +317 -0
  319. tests/networks/layers/test_gaussian_filter.py +206 -0
  320. tests/networks/layers/test_get_layers.py +65 -0
  321. tests/networks/layers/test_gmm.py +314 -0
  322. tests/networks/layers/test_grid_pull.py +93 -0
  323. tests/networks/layers/test_hilbert_transform.py +131 -0
  324. tests/networks/layers/test_lltm.py +62 -0
  325. tests/networks/layers/test_median_filter.py +52 -0
  326. tests/networks/layers/test_polyval.py +55 -0
  327. tests/networks/layers/test_preset_filters.py +136 -0
  328. tests/networks/layers/test_savitzky_golay_filter.py +141 -0
  329. tests/networks/layers/test_separable_filter.py +87 -0
  330. tests/networks/layers/test_skip_connection.py +48 -0
  331. tests/networks/layers/test_vector_quantizer.py +89 -0
  332. tests/networks/layers/test_weight_init.py +50 -0
  333. tests/networks/nets/__init__.py +10 -0
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  680. tests/transforms/test_spatial_resample.py +235 -0
  681. tests/transforms/test_squeezedim.py +62 -0
  682. tests/transforms/test_squeezedimd.py +98 -0
  683. tests/transforms/test_std_shift_intensity.py +76 -0
  684. tests/transforms/test_std_shift_intensityd.py +74 -0
  685. tests/transforms/test_threshold_intensity.py +38 -0
  686. tests/transforms/test_threshold_intensityd.py +58 -0
  687. tests/transforms/test_to_contiguous.py +47 -0
  688. tests/transforms/test_to_cupy.py +112 -0
  689. tests/transforms/test_to_cupyd.py +76 -0
  690. tests/transforms/test_to_device.py +42 -0
  691. tests/transforms/test_to_deviced.py +37 -0
  692. tests/transforms/test_to_numpy.py +85 -0
  693. tests/transforms/test_to_numpyd.py +68 -0
  694. tests/transforms/test_to_pil.py +52 -0
  695. tests/transforms/test_to_pild.py +50 -0
  696. tests/transforms/test_to_tensor.py +60 -0
  697. tests/transforms/test_to_tensord.py +71 -0
  698. tests/transforms/test_torchvision.py +66 -0
  699. tests/transforms/test_torchvisiond.py +63 -0
  700. tests/transforms/test_transform.py +62 -0
  701. tests/transforms/test_transpose.py +41 -0
  702. tests/transforms/test_transposed.py +52 -0
  703. tests/transforms/test_ultrasound_confidence_map_transform.py +711 -0
  704. tests/transforms/test_utils_pytorch_numpy_unification.py +90 -0
  705. tests/transforms/test_vote_ensemble.py +84 -0
  706. tests/transforms/test_vote_ensembled.py +107 -0
  707. tests/transforms/test_with_allow_missing_keys.py +76 -0
  708. tests/transforms/test_zoom.py +120 -0
  709. tests/transforms/test_zoomd.py +94 -0
  710. tests/transforms/transform/__init__.py +10 -0
  711. tests/transforms/transform/test_randomizable.py +52 -0
  712. tests/transforms/transform/test_randomizable_transform_type.py +37 -0
  713. tests/transforms/utility/__init__.py +10 -0
  714. tests/transforms/utility/test_apply_transform_to_points.py +81 -0
  715. tests/transforms/utility/test_apply_transform_to_pointsd.py +185 -0
  716. tests/transforms/utility/test_identity.py +29 -0
  717. tests/transforms/utility/test_identityd.py +30 -0
  718. tests/transforms/utility/test_lambda.py +71 -0
  719. tests/transforms/utility/test_lambdad.py +83 -0
  720. tests/transforms/utility/test_rand_lambda.py +87 -0
  721. tests/transforms/utility/test_rand_lambdad.py +77 -0
  722. tests/transforms/utility/test_simulatedelay.py +36 -0
  723. tests/transforms/utility/test_simulatedelayd.py +36 -0
  724. tests/transforms/utility/test_splitdim.py +52 -0
  725. tests/transforms/utility/test_splitdimd.py +96 -0
  726. tests/transforms/utils/__init__.py +10 -0
  727. tests/transforms/utils/test_correct_crop_centers.py +36 -0
  728. tests/transforms/utils/test_get_unique_labels.py +45 -0
  729. tests/transforms/utils/test_print_transform_backends.py +29 -0
  730. tests/transforms/utils/test_soft_clip.py +125 -0
  731. tests/utils/__init__.py +10 -0
  732. tests/utils/enums/__init__.py +10 -0
  733. tests/utils/enums/test_hovernet_loss.py +190 -0
  734. tests/utils/enums/test_ordering.py +289 -0
  735. tests/utils/enums/test_wsireader.py +663 -0
  736. tests/utils/misc/__init__.py +10 -0
  737. tests/utils/misc/test_ensure_tuple.py +53 -0
  738. tests/utils/misc/test_monai_env_vars.py +44 -0
  739. tests/utils/misc/test_monai_utils_misc.py +103 -0
  740. tests/utils/misc/test_str2bool.py +34 -0
  741. tests/utils/misc/test_str2list.py +33 -0
  742. tests/utils/test_alias.py +44 -0
  743. tests/utils/test_component_store.py +73 -0
  744. tests/utils/test_deprecated.py +455 -0
  745. tests/utils/test_enum_bound_interp.py +75 -0
  746. tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
  747. tests/utils/test_get_package_version.py +34 -0
  748. tests/utils/test_handler_logfile.py +84 -0
  749. tests/utils/test_handler_metric_logger.py +62 -0
  750. tests/utils/test_list_to_dict.py +43 -0
  751. tests/utils/test_look_up_option.py +87 -0
  752. tests/utils/test_optional_import.py +80 -0
  753. tests/utils/test_pad_mode.py +39 -0
  754. tests/utils/test_profiling.py +208 -0
  755. tests/utils/test_rankfilter_dist.py +77 -0
  756. tests/utils/test_require_pkg.py +83 -0
  757. tests/utils/test_sample_slices.py +43 -0
  758. tests/utils/test_set_determinism.py +74 -0
  759. tests/utils/test_squeeze_unsqueeze.py +71 -0
  760. tests/utils/test_state_cacher.py +67 -0
  761. tests/utils/test_torchscript_utils.py +113 -0
  762. tests/utils/test_version.py +91 -0
  763. tests/utils/test_version_after.py +65 -0
  764. tests/utils/type_conversion/__init__.py +10 -0
  765. tests/utils/type_conversion/test_convert_data_type.py +152 -0
  766. tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
  767. tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
  768. tests/visualize/__init__.py +10 -0
  769. tests/visualize/test_img2tensorboard.py +46 -0
  770. tests/visualize/test_occlusion_sensitivity.py +128 -0
  771. tests/visualize/test_plot_2d_or_3d_image.py +74 -0
  772. tests/visualize/test_vis_cam.py +98 -0
  773. tests/visualize/test_vis_gradcam.py +211 -0
  774. tests/visualize/utils/__init__.py +10 -0
  775. tests/visualize/utils/test_blend_images.py +63 -0
  776. tests/visualize/utils/test_matshow3d.py +133 -0
  777. monai_weekly-1.5.dev2505.dist-info/RECORD +0 -427
  778. {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
  779. {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
@@ -0,0 +1,77 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ from parameterized import parameterized
18
+
19
+ from monai.transforms import AddExtremePointsChanneld
20
+ from tests.test_utils import TEST_NDARRAYS, assert_allclose
21
+
22
+ IMG_CHANNEL = 3
23
+
24
+ TESTS = []
25
+ for p in TEST_NDARRAYS:
26
+ for q in TEST_NDARRAYS:
27
+ TESTS.append(
28
+ [
29
+ {
30
+ "img": p(np.zeros((IMG_CHANNEL, 4, 3))),
31
+ "label": q(np.array([[[0, 1, 0], [0, 0, 1], [0, 1, 0], [1, 0, 0]]])),
32
+ },
33
+ p(
34
+ np.array(
35
+ [
36
+ [0.38318458, 0.98615628, 0.85551184],
37
+ [0.35422316, 0.94430935, 1.0],
38
+ [0.46000731, 0.57319659, 0.46000722],
39
+ [0.64577687, 0.38318464, 0.0],
40
+ ]
41
+ )
42
+ ),
43
+ ]
44
+ )
45
+
46
+ TESTS.append(
47
+ [
48
+ {
49
+ "img": p(np.zeros((IMG_CHANNEL, 4, 3))),
50
+ "label": q(np.array([[[0, 1, 0], [1, 1, 1], [0, 1, 0], [0, 1, 0]]])),
51
+ },
52
+ p(
53
+ np.array(
54
+ [
55
+ [0.44628328, 0.80495411, 0.44628328],
56
+ [0.6779086, 1.0, 0.67790854],
57
+ [0.33002687, 0.62079221, 0.33002687],
58
+ [0.0, 0.31848389, 0.0],
59
+ ]
60
+ )
61
+ ),
62
+ ]
63
+ )
64
+
65
+
66
+ class TestAddExtremePointsChanneld(unittest.TestCase):
67
+ @parameterized.expand(TESTS)
68
+ def test_correct_results(self, input_data, expected):
69
+ add_extreme_points_channel = AddExtremePointsChanneld(
70
+ keys="img", label_key="label", sigma=1.0, rescale_min=0.0, rescale_max=1.0
71
+ )
72
+ result = add_extreme_points_channel(input_data)
73
+ assert_allclose(result["img"][IMG_CHANNEL], expected, rtol=1e-4, atol=1e-5)
74
+
75
+
76
+ if __name__ == "__main__":
77
+ unittest.main()
@@ -0,0 +1,70 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ from parameterized import parameterized
18
+
19
+ from monai.transforms import AdjustContrast
20
+ from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
21
+
22
+ TESTS = []
23
+ for invert_image in (True, False):
24
+ for retain_stats in (True, False):
25
+ TEST_CASE_1 = [1.0, invert_image, retain_stats]
26
+ TEST_CASE_2 = [0.5, invert_image, retain_stats]
27
+ TEST_CASE_3 = [4.5, invert_image, retain_stats]
28
+
29
+ TESTS.extend([TEST_CASE_1, TEST_CASE_2, TEST_CASE_3])
30
+
31
+
32
+ class TestAdjustContrast(NumpyImageTestCase2D):
33
+ @parameterized.expand(TESTS)
34
+ def test_correct_results(self, gamma, invert_image, retain_stats):
35
+ adjuster = AdjustContrast(gamma=gamma, invert_image=invert_image, retain_stats=retain_stats)
36
+ for p in TEST_NDARRAYS:
37
+ im = p(self.imt)
38
+ result = adjuster(im)
39
+ self.assertTrue(type(im), type(result))
40
+ if False: # gamma == 1.0:
41
+ expected = self.imt
42
+ else:
43
+ if invert_image:
44
+ self.imt = -self.imt
45
+
46
+ if retain_stats:
47
+ mn = self.imt.mean()
48
+ sd = self.imt.std()
49
+
50
+ epsilon = 1e-7
51
+ img_min = self.imt.min()
52
+ img_range = self.imt.max() - img_min
53
+
54
+ expected = np.power(((self.imt - img_min) / float(img_range + epsilon)), gamma) * img_range + img_min
55
+
56
+ if retain_stats:
57
+ # zero mean and normalize
58
+ expected = expected - expected.mean()
59
+ expected = expected / (expected.std() + 1e-8)
60
+ # restore old mean and standard deviation
61
+ expected = sd * expected + mn
62
+
63
+ if invert_image:
64
+ expected = -expected
65
+
66
+ assert_allclose(result, expected, atol=1e-05, type_test="tensor")
67
+
68
+
69
+ if __name__ == "__main__":
70
+ unittest.main()
@@ -0,0 +1,64 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ from parameterized import parameterized
18
+
19
+ from monai.transforms import AdjustContrastd
20
+ from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D, assert_allclose
21
+
22
+ TESTS = []
23
+ for invert_image in (True, False):
24
+ for retain_stats in (True, False):
25
+ TEST_CASE_1 = [1.0, invert_image, retain_stats]
26
+ TEST_CASE_2 = [0.5, invert_image, retain_stats]
27
+ TEST_CASE_3 = [4.5, invert_image, retain_stats]
28
+
29
+ TESTS.extend([TEST_CASE_1, TEST_CASE_2, TEST_CASE_3])
30
+
31
+
32
+ class TestAdjustContrastd(NumpyImageTestCase2D):
33
+ @parameterized.expand(TESTS)
34
+ def test_correct_results(self, gamma, invert_image, retain_stats):
35
+ adjuster = AdjustContrastd("img", gamma=gamma, invert_image=invert_image, retain_stats=retain_stats)
36
+ for p in TEST_NDARRAYS:
37
+ result = adjuster({"img": p(self.imt)})
38
+ if invert_image:
39
+ self.imt = -self.imt
40
+
41
+ if retain_stats:
42
+ mn = self.imt.mean()
43
+ sd = self.imt.std()
44
+
45
+ epsilon = 1e-7
46
+ img_min = self.imt.min()
47
+ img_range = self.imt.max() - img_min
48
+
49
+ expected = np.power(((self.imt - img_min) / float(img_range + epsilon)), gamma) * img_range + img_min
50
+
51
+ if retain_stats:
52
+ # zero mean and normalize
53
+ expected = expected - expected.mean()
54
+ expected = expected / (expected.std() + 1e-8)
55
+ # restore old mean and standard deviation
56
+ expected = sd * expected + mn
57
+
58
+ if invert_image:
59
+ expected = -expected
60
+ assert_allclose(result["img"], expected, atol=1e-05, type_test="tensor")
61
+
62
+
63
+ if __name__ == "__main__":
64
+ unittest.main()
@@ -0,0 +1,245 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+ from copy import deepcopy
16
+
17
+ import numpy as np
18
+ import torch
19
+ from parameterized import parameterized
20
+
21
+ from monai.data import MetaTensor, set_track_meta
22
+ from monai.transforms import Affine, Resize
23
+ from monai.transforms.lazy.functional import apply_pending
24
+ from monai.utils import optional_import
25
+ from tests.lazy_transforms_utils import test_resampler_lazy
26
+ from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose, test_local_inversion
27
+
28
+ TESTS = []
29
+ for p in TEST_NDARRAYS_ALL:
30
+ for device in [None, "cpu", "cuda"] if torch.cuda.is_available() else [None, "cpu"]:
31
+ TESTS.append(
32
+ [
33
+ dict(padding_mode="zeros", device=device),
34
+ {"img": p(np.arange(9).reshape((1, 3, 3))), "spatial_size": (-1, 0)},
35
+ p(np.arange(9).reshape(1, 3, 3)),
36
+ ]
37
+ )
38
+ TESTS.append(
39
+ [
40
+ dict(padding_mode="zeros", device=device, image_only=True),
41
+ {"img": p(np.arange(9).reshape((1, 3, 3))), "spatial_size": (-1, 0)},
42
+ p(np.arange(9).reshape(1, 3, 3)),
43
+ ]
44
+ )
45
+ TESTS.append(
46
+ [
47
+ dict(padding_mode="zeros", device=device),
48
+ {"img": p(np.arange(4).reshape((1, 2, 2)))},
49
+ p(np.arange(4).reshape(1, 2, 2)),
50
+ ]
51
+ )
52
+ TESTS.append(
53
+ [
54
+ dict(padding_mode="zeros", device=device),
55
+ {"img": p(np.arange(4).reshape((1, 2, 2))), "spatial_size": (4, 4)},
56
+ p(np.array([[[0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 2.0, 3.0, 0.0], [0.0, 0.0, 0.0, 0.0]]])),
57
+ ]
58
+ )
59
+ TESTS.append(
60
+ [
61
+ dict(rotate_params=[np.pi / 2], padding_mode="zeros", device=device),
62
+ {"img": p(np.arange(4).reshape((1, 2, 2))), "spatial_size": (4, 4)},
63
+ p(np.array([[[0.0, 0.0, 0.0, 0.0], [0.0, 2.0, 0.0, 0.0], [0.0, 3.0, 1.0, 0.0], [0.0, 0.0, 0.0, 0.0]]])),
64
+ ]
65
+ )
66
+ TESTS.append(
67
+ [
68
+ dict(rotate_params=[np.pi / 2], padding_mode="zeros", device=device, align_corners=False),
69
+ {"img": p(np.arange(4).reshape((1, 2, 2))), "spatial_size": (4, 4)},
70
+ p(np.array([[[0.0, 0.0, 0.0, 0.0], [0.0, 2.0, 0.0, 0.0], [0.0, 3.0, 1.0, 0.0], [0.0, 0.0, 0.0, 0.0]]])),
71
+ ]
72
+ )
73
+ TESTS.append(
74
+ [
75
+ dict(
76
+ affine=p(torch.tensor([[0.0, -1.0, 0.0], [1.0, 0.0, 0.0], [0.0, 0.0, 1.0]])),
77
+ padding_mode="zeros",
78
+ device=device,
79
+ ),
80
+ {"img": p(np.arange(4).reshape((1, 2, 2))), "spatial_size": (4, 4)},
81
+ p(np.array([[[0.0, 0.0, 0.0, 0.0], [0.0, 2.0, 0.0, 0.0], [0.0, 3.0, 1.0, 0.0], [0.0, 0.0, 0.0, 0.0]]])),
82
+ ]
83
+ )
84
+ TESTS.append(
85
+ [
86
+ dict(padding_mode="zeros", device=device),
87
+ {"img": p(np.arange(27).reshape((1, 3, 3, 3))), "spatial_size": (-1, 0, 0)},
88
+ p(np.arange(27).reshape(1, 3, 3, 3)),
89
+ ]
90
+ )
91
+ TESTS.append(
92
+ [
93
+ dict(padding_mode="zeros", device=device),
94
+ {"img": p(np.arange(8).reshape((1, 2, 2, 2))), "spatial_size": (4, 4, 4)},
95
+ p(
96
+ np.array(
97
+ [
98
+ [
99
+ [
100
+ [0.0, 0.0, 0.0, 0.0],
101
+ [0.0, 0.0, 0.0, 0.0],
102
+ [0.0, 0.0, 0.0, 0.0],
103
+ [0.0, 0.0, 0.0, 0.0],
104
+ ],
105
+ [
106
+ [0.0, 0.0, 0.0, 0.0],
107
+ [0.0, 0.0, 1.0, 0.0],
108
+ [0.0, 2.0, 3.0, 0.0],
109
+ [0.0, 0.0, 0.0, 0.0],
110
+ ],
111
+ [
112
+ [0.0, 0.0, 0.0, 0.0],
113
+ [0.0, 4.0, 5.0, 0.0],
114
+ [0.0, 6.0, 7.0, 0.0],
115
+ [0.0, 0.0, 0.0, 0.0],
116
+ ],
117
+ [
118
+ [0.0, 0.0, 0.0, 0.0],
119
+ [0.0, 0.0, 0.0, 0.0],
120
+ [0.0, 0.0, 0.0, 0.0],
121
+ [0.0, 0.0, 0.0, 0.0],
122
+ ],
123
+ ]
124
+ ]
125
+ )
126
+ ),
127
+ ]
128
+ )
129
+ TESTS.append(
130
+ [
131
+ dict(rotate_params=[np.pi / 2], padding_mode="zeros", device=device),
132
+ {"img": p(np.arange(8).reshape((1, 2, 2, 2))), "spatial_size": (4, 4, 4)},
133
+ p(
134
+ np.array(
135
+ [
136
+ [
137
+ [
138
+ [0.0, 0.0, 0.0, 0.0],
139
+ [0.0, 0.0, 0.0, 0.0],
140
+ [0.0, 0.0, 0.0, 0.0],
141
+ [0.0, 0.0, 0.0, 0.0],
142
+ ],
143
+ [
144
+ [0.0, 0.0, 0.0, 0.0],
145
+ [0.0, 2.0, 0.0, 0.0],
146
+ [0.0, 3.0, 1.0, 0.0],
147
+ [0.0, 0.0, 0.0, 0.0],
148
+ ],
149
+ [
150
+ [0.0, 0.0, 0.0, 0.0],
151
+ [0.0, 6.0, 4.0, 0.0],
152
+ [0.0, 7.0, 5.0, 0.0],
153
+ [0.0, 0.0, 0.0, 0.0],
154
+ ],
155
+ [
156
+ [0.0, 0.0, 0.0, 0.0],
157
+ [0.0, 0.0, 0.0, 0.0],
158
+ [0.0, 0.0, 0.0, 0.0],
159
+ [0.0, 0.0, 0.0, 0.0],
160
+ ],
161
+ ]
162
+ ]
163
+ )
164
+ ),
165
+ ]
166
+ )
167
+
168
+
169
+ class TestAffine(unittest.TestCase):
170
+ @parameterized.expand(TESTS)
171
+ def test_affine(self, input_param, input_data, expected_val):
172
+ input_copy = deepcopy(input_data["img"])
173
+ g = Affine(**input_param)
174
+ result = g(**input_data)
175
+ output_idx = None
176
+ if isinstance(result, tuple):
177
+ output_idx = 0
178
+ result = result[output_idx]
179
+
180
+ test_local_inversion(g, result, input_copy)
181
+ assert_allclose(result, expected_val, rtol=1e-4, atol=1e-4, type_test=False)
182
+
183
+ set_track_meta(False)
184
+ result = g(**input_data)
185
+ if isinstance(result, tuple):
186
+ result = result[0]
187
+ self.assertNotIsInstance(result, MetaTensor)
188
+ self.assertIsInstance(result, torch.Tensor)
189
+ set_track_meta(True)
190
+
191
+ # test lazy
192
+ lazy_input_param = input_param.copy()
193
+ for align_corners in [True, False]:
194
+ lazy_input_param["align_corners"] = align_corners
195
+ resampler = Affine(**lazy_input_param)
196
+ non_lazy_result = resampler(**input_data)
197
+ test_resampler_lazy(resampler, non_lazy_result, lazy_input_param, input_data, output_idx=output_idx)
198
+
199
+
200
+ @unittest.skipUnless(optional_import("scipy")[1], "Requires scipy library.")
201
+ class TestAffineConsistency(unittest.TestCase):
202
+ @parameterized.expand([[7], [8], [9]])
203
+ def test_affine_resize(self, s):
204
+ """s"""
205
+ im = np.arange(4).reshape(1, 2, 2).astype(float)
206
+ mat = np.array([[1 / s, 0, 0], [0, 1 / s, 0], [0, 0, 1]])
207
+ sp_size = 2 * s
208
+
209
+ def method_0(im, ac):
210
+ xform = Affine(align_corners=ac, affine=mat, image_only=True, spatial_size=sp_size)
211
+ xform.lazy = True
212
+ out = xform(im)
213
+ overrides = {"padding_mode": "border", "align_corners": ac}
214
+ out = apply_pending(out, overrides=overrides)[0]
215
+ return out
216
+
217
+ def method_1(im, ac):
218
+ xform = Affine(align_corners=ac, affine=mat, image_only=True, spatial_size=sp_size)
219
+ xform.lazy = True
220
+ out = xform(im)
221
+ overrides = {"mode": 1, "padding_mode": "nearest", "align_corners": ac}
222
+ out = apply_pending(out, overrides=overrides)[0]
223
+ return out
224
+
225
+ def method_2(im, ac):
226
+ xform = Affine(align_corners=ac, affine=mat, padding_mode="border", image_only=True, spatial_size=sp_size)
227
+ out = xform(im)
228
+ return out
229
+
230
+ def method_3(im, ac):
231
+ xform = Affine(
232
+ align_corners=ac, affine=mat, mode=1, padding_mode="nearest", image_only=True, spatial_size=sp_size
233
+ )
234
+ out = xform(im)
235
+ return out
236
+
237
+ for call in (method_0, method_1, method_2, method_3):
238
+ for ac in (False, True):
239
+ out = call(im, ac)
240
+ ref = Resize(align_corners=ac, spatial_size=(sp_size, sp_size), mode="bilinear")(im)
241
+ assert_allclose(out, ref, rtol=1e-4, atol=1e-4, type_test=False)
242
+
243
+
244
+ if __name__ == "__main__":
245
+ unittest.main()
@@ -0,0 +1,152 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ import torch
18
+ from parameterized import parameterized
19
+
20
+ from monai.data import MetaTensor, set_track_meta
21
+ from monai.transforms import AffineGrid
22
+ from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose, is_tf32_env
23
+
24
+ TESTS = []
25
+ for p in TEST_NDARRAYS_ALL:
26
+ for device in [None, "cpu", "cuda"] if torch.cuda.is_available() else [None, "cpu"]:
27
+ TESTS.append(
28
+ [
29
+ {"device": device},
30
+ {"spatial_size": (2, 2)},
31
+ np.array([[[-0.5, -0.5], [0.5, 0.5]], [[-0.5, 0.5], [-0.5, 0.5]], [[1.0, 1.0], [1.0, 1.0]]]),
32
+ ]
33
+ )
34
+
35
+ TESTS.append([{"device": device}, {"grid": p(np.ones((3, 3, 3)))}, p(np.ones((3, 3, 3)))])
36
+ TESTS.append([{"device": device}, {"grid": p(torch.ones((3, 3, 3)))}, p(np.ones((3, 3, 3)))])
37
+ TESTS.append(
38
+ [
39
+ {"rotate_params": (1.0, 1.0), "scale_params": (-20, 10), "device": device},
40
+ {"grid": p(torch.ones((3, 3, 3)))},
41
+ p(
42
+ torch.tensor(
43
+ [
44
+ [
45
+ [-19.2208, -19.2208, -19.2208],
46
+ [-19.2208, -19.2208, -19.2208],
47
+ [-19.2208, -19.2208, -19.2208],
48
+ ],
49
+ [
50
+ [-11.4264, -11.4264, -11.4264],
51
+ [-11.4264, -11.4264, -11.4264],
52
+ [-11.4264, -11.4264, -11.4264],
53
+ ],
54
+ [[1.0, 1.0, 1.0], [1.0, 1.0, 1.0], [1.0, 1.0, 1.0]],
55
+ ]
56
+ )
57
+ ),
58
+ ]
59
+ )
60
+ TESTS.append(
61
+ [
62
+ {
63
+ "affine": p(
64
+ torch.tensor(
65
+ [[-10.8060, -8.4147, 0.0000], [-16.8294, 5.4030, 0.0000], [0.0000, 0.0000, 1.0000]]
66
+ )
67
+ )
68
+ },
69
+ {"grid": p(torch.ones((3, 3, 3)))},
70
+ p(
71
+ torch.tensor(
72
+ [
73
+ [
74
+ [-19.2208, -19.2208, -19.2208],
75
+ [-19.2208, -19.2208, -19.2208],
76
+ [-19.2208, -19.2208, -19.2208],
77
+ ],
78
+ [
79
+ [-11.4264, -11.4264, -11.4264],
80
+ [-11.4264, -11.4264, -11.4264],
81
+ [-11.4264, -11.4264, -11.4264],
82
+ ],
83
+ [[1.0, 1.0, 1.0], [1.0, 1.0, 1.0], [1.0, 1.0, 1.0]],
84
+ ]
85
+ )
86
+ ),
87
+ ]
88
+ )
89
+ TESTS.append(
90
+ [
91
+ {"rotate_params": (1.0, 1.0, 1.0), "scale_params": (-20, 10), "device": device},
92
+ {"grid": p(torch.ones((4, 3, 3, 3)))},
93
+ p(
94
+ torch.tensor(
95
+ [
96
+ [
97
+ [[-9.5435, -9.5435, -9.5435], [-9.5435, -9.5435, -9.5435], [-9.5435, -9.5435, -9.5435]],
98
+ [[-9.5435, -9.5435, -9.5435], [-9.5435, -9.5435, -9.5435], [-9.5435, -9.5435, -9.5435]],
99
+ [[-9.5435, -9.5435, -9.5435], [-9.5435, -9.5435, -9.5435], [-9.5435, -9.5435, -9.5435]],
100
+ ],
101
+ [
102
+ [
103
+ [-20.2381, -20.2381, -20.2381],
104
+ [-20.2381, -20.2381, -20.2381],
105
+ [-20.2381, -20.2381, -20.2381],
106
+ ],
107
+ [
108
+ [-20.2381, -20.2381, -20.2381],
109
+ [-20.2381, -20.2381, -20.2381],
110
+ [-20.2381, -20.2381, -20.2381],
111
+ ],
112
+ [
113
+ [-20.2381, -20.2381, -20.2381],
114
+ [-20.2381, -20.2381, -20.2381],
115
+ [-20.2381, -20.2381, -20.2381],
116
+ ],
117
+ ],
118
+ [
119
+ [[-0.5844, -0.5844, -0.5844], [-0.5844, -0.5844, -0.5844], [-0.5844, -0.5844, -0.5844]],
120
+ [[-0.5844, -0.5844, -0.5844], [-0.5844, -0.5844, -0.5844], [-0.5844, -0.5844, -0.5844]],
121
+ [[-0.5844, -0.5844, -0.5844], [-0.5844, -0.5844, -0.5844], [-0.5844, -0.5844, -0.5844]],
122
+ ],
123
+ [
124
+ [[1.0000, 1.0000, 1.0000], [1.0000, 1.0000, 1.0000], [1.0000, 1.0000, 1.0000]],
125
+ [[1.0000, 1.0000, 1.0000], [1.0000, 1.0000, 1.0000], [1.0000, 1.0000, 1.0000]],
126
+ [[1.0000, 1.0000, 1.0000], [1.0000, 1.0000, 1.0000], [1.0000, 1.0000, 1.0000]],
127
+ ],
128
+ ]
129
+ )
130
+ ),
131
+ ]
132
+ )
133
+
134
+ _rtol = 5e-2 if is_tf32_env() else 1e-4
135
+
136
+
137
+ class TestAffineGrid(unittest.TestCase):
138
+ @parameterized.expand(TESTS)
139
+ def test_affine_grid(self, input_param, input_data, expected_val):
140
+ g = AffineGrid(**input_param)
141
+ set_track_meta(False)
142
+ result, _ = g(**input_data)
143
+ self.assertNotIsInstance(result, MetaTensor)
144
+ self.assertIsInstance(result, torch.Tensor)
145
+ set_track_meta(True)
146
+ if "device" in input_data:
147
+ self.assertEqual(result.device, input_data[device])
148
+ assert_allclose(result, expected_val, type_test=False, rtol=_rtol)
149
+
150
+
151
+ if __name__ == "__main__":
152
+ unittest.main()