monai-weekly 1.5.dev2505__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl

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Files changed (779) hide show
  1. monai/__init__.py +1 -1
  2. monai/_version.py +3 -3
  3. monai/apps/auto3dseg/transforms.py +1 -4
  4. monai/data/meta_tensor.py +5 -0
  5. monai/data/utils.py +6 -13
  6. monai/inferers/utils.py +1 -2
  7. monai/losses/dice.py +2 -14
  8. monai/losses/ds_loss.py +1 -3
  9. monai/networks/layers/simplelayers.py +2 -14
  10. monai/networks/utils.py +4 -16
  11. monai/transforms/compose.py +28 -11
  12. monai/transforms/croppad/array.py +1 -6
  13. monai/transforms/io/array.py +0 -1
  14. monai/transforms/transform.py +15 -6
  15. monai/transforms/utils.py +1 -2
  16. monai/utils/jupyter_utils.py +1 -1
  17. monai/utils/tf32.py +0 -10
  18. monai/visualize/class_activation_maps.py +5 -8
  19. monai/visualize/img2tensorboard.py +2 -2
  20. {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
  21. monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
  22. {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
  23. tests/apps/__init__.py +10 -0
  24. tests/apps/deepedit/__init__.py +10 -0
  25. tests/apps/deepedit/test_deepedit_transforms.py +314 -0
  26. tests/apps/deepgrow/__init__.py +10 -0
  27. tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
  28. tests/apps/deepgrow/transforms/__init__.py +10 -0
  29. tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
  30. tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
  31. tests/apps/detection/__init__.py +10 -0
  32. tests/apps/detection/metrics/__init__.py +10 -0
  33. tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
  34. tests/apps/detection/networks/__init__.py +10 -0
  35. tests/apps/detection/networks/test_retinanet.py +210 -0
  36. tests/apps/detection/networks/test_retinanet_detector.py +203 -0
  37. tests/apps/detection/test_box_transform.py +370 -0
  38. tests/apps/detection/utils/__init__.py +10 -0
  39. tests/apps/detection/utils/test_anchor_box.py +88 -0
  40. tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
  41. tests/apps/detection/utils/test_box_coder.py +43 -0
  42. tests/apps/detection/utils/test_detector_boxselector.py +67 -0
  43. tests/apps/detection/utils/test_detector_utils.py +96 -0
  44. tests/apps/detection/utils/test_hardnegsampler.py +54 -0
  45. tests/apps/nuclick/__init__.py +10 -0
  46. tests/apps/nuclick/test_nuclick_transforms.py +259 -0
  47. tests/apps/pathology/__init__.py +10 -0
  48. tests/apps/pathology/handlers/__init__.py +10 -0
  49. tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
  50. tests/apps/pathology/test_lesion_froc.py +333 -0
  51. tests/apps/pathology/test_pathology_prob_nms.py +55 -0
  52. tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
  53. tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
  54. tests/apps/pathology/transforms/__init__.py +10 -0
  55. tests/apps/pathology/transforms/post/__init__.py +10 -0
  56. tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
  57. tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
  58. tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
  59. tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
  60. tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
  61. tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
  62. tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
  63. tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
  64. tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
  65. tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
  66. tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
  67. tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
  68. tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
  69. tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
  70. tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
  71. tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
  72. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
  73. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
  74. tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
  75. tests/apps/pathology/transforms/post/test_watershed.py +60 -0
  76. tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
  77. tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
  78. tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
  79. tests/apps/reconstruction/__init__.py +10 -0
  80. tests/apps/reconstruction/nets/__init__.py +10 -0
  81. tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
  82. tests/apps/reconstruction/test_complex_utils.py +77 -0
  83. tests/apps/reconstruction/test_fastmri_reader.py +82 -0
  84. tests/apps/reconstruction/test_mri_utils.py +37 -0
  85. tests/apps/reconstruction/transforms/__init__.py +10 -0
  86. tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
  87. tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
  88. tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
  89. tests/apps/test_auto3dseg_bundlegen.py +156 -0
  90. tests/apps/test_check_hash.py +53 -0
  91. tests/apps/test_cross_validation.py +74 -0
  92. tests/apps/test_decathlondataset.py +93 -0
  93. tests/apps/test_download_and_extract.py +70 -0
  94. tests/apps/test_download_url_yandex.py +45 -0
  95. tests/apps/test_mednistdataset.py +72 -0
  96. tests/apps/test_mmar_download.py +154 -0
  97. tests/apps/test_tciadataset.py +123 -0
  98. tests/apps/vista3d/__init__.py +10 -0
  99. tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
  100. tests/apps/vista3d/test_vista3d_sampler.py +100 -0
  101. tests/apps/vista3d/test_vista3d_transforms.py +94 -0
  102. tests/bundle/__init__.py +10 -0
  103. tests/bundle/test_bundle_ckpt_export.py +107 -0
  104. tests/bundle/test_bundle_download.py +435 -0
  105. tests/bundle/test_bundle_get_data.py +94 -0
  106. tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
  107. tests/bundle/test_bundle_trt_export.py +147 -0
  108. tests/bundle/test_bundle_utils.py +149 -0
  109. tests/bundle/test_bundle_verify_metadata.py +66 -0
  110. tests/bundle/test_bundle_verify_net.py +76 -0
  111. tests/bundle/test_bundle_workflow.py +272 -0
  112. tests/bundle/test_component_locator.py +38 -0
  113. tests/bundle/test_config_item.py +138 -0
  114. tests/bundle/test_config_parser.py +392 -0
  115. tests/bundle/test_reference_resolver.py +114 -0
  116. tests/config/__init__.py +10 -0
  117. tests/config/test_cv2_dist.py +53 -0
  118. tests/engines/__init__.py +10 -0
  119. tests/engines/test_ensemble_evaluator.py +94 -0
  120. tests/engines/test_prepare_batch_default.py +76 -0
  121. tests/engines/test_prepare_batch_default_dist.py +76 -0
  122. tests/engines/test_prepare_batch_diffusion.py +104 -0
  123. tests/engines/test_prepare_batch_extra_input.py +80 -0
  124. tests/fl/__init__.py +10 -0
  125. tests/fl/monai_algo/__init__.py +10 -0
  126. tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
  127. tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
  128. tests/fl/test_fl_monai_algo_stats.py +81 -0
  129. tests/fl/utils/__init__.py +10 -0
  130. tests/fl/utils/test_fl_exchange_object.py +63 -0
  131. tests/handlers/__init__.py +10 -0
  132. tests/handlers/test_handler_checkpoint_loader.py +182 -0
  133. tests/handlers/test_handler_checkpoint_saver.py +233 -0
  134. tests/handlers/test_handler_classification_saver.py +64 -0
  135. tests/handlers/test_handler_classification_saver_dist.py +77 -0
  136. tests/handlers/test_handler_clearml_image.py +65 -0
  137. tests/handlers/test_handler_clearml_stats.py +65 -0
  138. tests/handlers/test_handler_confusion_matrix.py +104 -0
  139. tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
  140. tests/handlers/test_handler_decollate_batch.py +66 -0
  141. tests/handlers/test_handler_early_stop.py +68 -0
  142. tests/handlers/test_handler_garbage_collector.py +73 -0
  143. tests/handlers/test_handler_hausdorff_distance.py +111 -0
  144. tests/handlers/test_handler_ignite_metric.py +191 -0
  145. tests/handlers/test_handler_lr_scheduler.py +94 -0
  146. tests/handlers/test_handler_mean_dice.py +98 -0
  147. tests/handlers/test_handler_mean_iou.py +76 -0
  148. tests/handlers/test_handler_metrics_reloaded.py +149 -0
  149. tests/handlers/test_handler_metrics_saver.py +89 -0
  150. tests/handlers/test_handler_metrics_saver_dist.py +120 -0
  151. tests/handlers/test_handler_mlflow.py +296 -0
  152. tests/handlers/test_handler_nvtx.py +93 -0
  153. tests/handlers/test_handler_panoptic_quality.py +89 -0
  154. tests/handlers/test_handler_parameter_scheduler.py +136 -0
  155. tests/handlers/test_handler_post_processing.py +74 -0
  156. tests/handlers/test_handler_prob_map_producer.py +111 -0
  157. tests/handlers/test_handler_regression_metrics.py +160 -0
  158. tests/handlers/test_handler_regression_metrics_dist.py +245 -0
  159. tests/handlers/test_handler_rocauc.py +48 -0
  160. tests/handlers/test_handler_rocauc_dist.py +54 -0
  161. tests/handlers/test_handler_stats.py +281 -0
  162. tests/handlers/test_handler_surface_distance.py +113 -0
  163. tests/handlers/test_handler_tb_image.py +61 -0
  164. tests/handlers/test_handler_tb_stats.py +166 -0
  165. tests/handlers/test_handler_validation.py +59 -0
  166. tests/handlers/test_trt_compile.py +145 -0
  167. tests/handlers/test_write_metrics_reports.py +68 -0
  168. tests/inferers/__init__.py +10 -0
  169. tests/inferers/test_avg_merger.py +179 -0
  170. tests/inferers/test_controlnet_inferers.py +1310 -0
  171. tests/inferers/test_diffusion_inferer.py +236 -0
  172. tests/inferers/test_latent_diffusion_inferer.py +824 -0
  173. tests/inferers/test_patch_inferer.py +309 -0
  174. tests/inferers/test_saliency_inferer.py +55 -0
  175. tests/inferers/test_slice_inferer.py +57 -0
  176. tests/inferers/test_sliding_window_inference.py +377 -0
  177. tests/inferers/test_sliding_window_splitter.py +284 -0
  178. tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
  179. tests/inferers/test_zarr_avg_merger.py +326 -0
  180. tests/integration/__init__.py +10 -0
  181. tests/integration/test_auto3dseg_ensemble.py +211 -0
  182. tests/integration/test_auto3dseg_hpo.py +189 -0
  183. tests/integration/test_deepedit_interaction.py +122 -0
  184. tests/integration/test_downsample_block.py +50 -0
  185. tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
  186. tests/integration/test_integration_autorunner.py +201 -0
  187. tests/integration/test_integration_bundle_run.py +240 -0
  188. tests/integration/test_integration_classification_2d.py +282 -0
  189. tests/integration/test_integration_determinism.py +95 -0
  190. tests/integration/test_integration_fast_train.py +231 -0
  191. tests/integration/test_integration_gpu_customization.py +159 -0
  192. tests/integration/test_integration_lazy_samples.py +219 -0
  193. tests/integration/test_integration_nnunetv2_runner.py +96 -0
  194. tests/integration/test_integration_segmentation_3d.py +304 -0
  195. tests/integration/test_integration_sliding_window.py +100 -0
  196. tests/integration/test_integration_stn.py +133 -0
  197. tests/integration/test_integration_unet_2d.py +67 -0
  198. tests/integration/test_integration_workers.py +61 -0
  199. tests/integration/test_integration_workflows.py +365 -0
  200. tests/integration/test_integration_workflows_adversarial.py +173 -0
  201. tests/integration/test_integration_workflows_gan.py +158 -0
  202. tests/integration/test_loader_semaphore.py +48 -0
  203. tests/integration/test_mapping_filed.py +122 -0
  204. tests/integration/test_meta_affine.py +183 -0
  205. tests/integration/test_metatensor_integration.py +114 -0
  206. tests/integration/test_module_list.py +76 -0
  207. tests/integration/test_one_of.py +283 -0
  208. tests/integration/test_pad_collation.py +124 -0
  209. tests/integration/test_reg_loss_integration.py +107 -0
  210. tests/integration/test_retinanet_predict_utils.py +154 -0
  211. tests/integration/test_seg_loss_integration.py +159 -0
  212. tests/integration/test_spatial_combine_transforms.py +185 -0
  213. tests/integration/test_testtimeaugmentation.py +186 -0
  214. tests/integration/test_vis_gradbased.py +69 -0
  215. tests/integration/test_vista3d_utils.py +159 -0
  216. tests/losses/__init__.py +10 -0
  217. tests/losses/deform/__init__.py +10 -0
  218. tests/losses/deform/test_bending_energy.py +88 -0
  219. tests/losses/deform/test_diffusion_loss.py +117 -0
  220. tests/losses/image_dissimilarity/__init__.py +10 -0
  221. tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
  222. tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
  223. tests/losses/test_adversarial_loss.py +94 -0
  224. tests/losses/test_barlow_twins_loss.py +109 -0
  225. tests/losses/test_cldice_loss.py +51 -0
  226. tests/losses/test_contrastive_loss.py +86 -0
  227. tests/losses/test_dice_ce_loss.py +123 -0
  228. tests/losses/test_dice_focal_loss.py +124 -0
  229. tests/losses/test_dice_loss.py +227 -0
  230. tests/losses/test_ds_loss.py +189 -0
  231. tests/losses/test_focal_loss.py +379 -0
  232. tests/losses/test_generalized_dice_focal_loss.py +85 -0
  233. tests/losses/test_generalized_dice_loss.py +221 -0
  234. tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
  235. tests/losses/test_giou_loss.py +62 -0
  236. tests/losses/test_hausdorff_loss.py +264 -0
  237. tests/losses/test_masked_dice_loss.py +152 -0
  238. tests/losses/test_masked_loss.py +87 -0
  239. tests/losses/test_multi_scale.py +86 -0
  240. tests/losses/test_nacl_loss.py +167 -0
  241. tests/losses/test_perceptual_loss.py +122 -0
  242. tests/losses/test_spectral_loss.py +86 -0
  243. tests/losses/test_ssim_loss.py +59 -0
  244. tests/losses/test_sure_loss.py +72 -0
  245. tests/losses/test_tversky_loss.py +198 -0
  246. tests/losses/test_unified_focal_loss.py +66 -0
  247. tests/metrics/__init__.py +10 -0
  248. tests/metrics/test_compute_confusion_matrix.py +294 -0
  249. tests/metrics/test_compute_f_beta.py +80 -0
  250. tests/metrics/test_compute_fid_metric.py +40 -0
  251. tests/metrics/test_compute_froc.py +143 -0
  252. tests/metrics/test_compute_generalized_dice.py +240 -0
  253. tests/metrics/test_compute_meandice.py +306 -0
  254. tests/metrics/test_compute_meaniou.py +223 -0
  255. tests/metrics/test_compute_mmd_metric.py +56 -0
  256. tests/metrics/test_compute_multiscalessim_metric.py +83 -0
  257. tests/metrics/test_compute_panoptic_quality.py +113 -0
  258. tests/metrics/test_compute_regression_metrics.py +196 -0
  259. tests/metrics/test_compute_roc_auc.py +155 -0
  260. tests/metrics/test_compute_variance.py +147 -0
  261. tests/metrics/test_cumulative.py +63 -0
  262. tests/metrics/test_cumulative_average.py +74 -0
  263. tests/metrics/test_cumulative_average_dist.py +48 -0
  264. tests/metrics/test_hausdorff_distance.py +209 -0
  265. tests/metrics/test_label_quality_score.py +134 -0
  266. tests/metrics/test_loss_metric.py +57 -0
  267. tests/metrics/test_metrics_reloaded.py +96 -0
  268. tests/metrics/test_ssim_metric.py +78 -0
  269. tests/metrics/test_surface_dice.py +416 -0
  270. tests/metrics/test_surface_distance.py +186 -0
  271. tests/networks/__init__.py +10 -0
  272. tests/networks/blocks/__init__.py +10 -0
  273. tests/networks/blocks/dints_block/__init__.py +10 -0
  274. tests/networks/blocks/dints_block/test_acn_block.py +41 -0
  275. tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
  276. tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
  277. tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
  278. tests/networks/blocks/test_adn.py +86 -0
  279. tests/networks/blocks/test_convolutions.py +156 -0
  280. tests/networks/blocks/test_crf_cpu.py +513 -0
  281. tests/networks/blocks/test_crf_cuda.py +528 -0
  282. tests/networks/blocks/test_crossattention.py +185 -0
  283. tests/networks/blocks/test_denseblock.py +105 -0
  284. tests/networks/blocks/test_dynunet_block.py +116 -0
  285. tests/networks/blocks/test_fpn_block.py +88 -0
  286. tests/networks/blocks/test_localnet_block.py +121 -0
  287. tests/networks/blocks/test_mlp.py +78 -0
  288. tests/networks/blocks/test_patchembedding.py +212 -0
  289. tests/networks/blocks/test_regunet_block.py +103 -0
  290. tests/networks/blocks/test_se_block.py +85 -0
  291. tests/networks/blocks/test_se_blocks.py +78 -0
  292. tests/networks/blocks/test_segresnet_block.py +57 -0
  293. tests/networks/blocks/test_selfattention.py +232 -0
  294. tests/networks/blocks/test_simple_aspp.py +87 -0
  295. tests/networks/blocks/test_spatialattention.py +55 -0
  296. tests/networks/blocks/test_subpixel_upsample.py +87 -0
  297. tests/networks/blocks/test_text_encoding.py +49 -0
  298. tests/networks/blocks/test_transformerblock.py +90 -0
  299. tests/networks/blocks/test_unetr_block.py +158 -0
  300. tests/networks/blocks/test_upsample_block.py +134 -0
  301. tests/networks/blocks/warp/__init__.py +10 -0
  302. tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
  303. tests/networks/blocks/warp/test_warp.py +250 -0
  304. tests/networks/layers/__init__.py +10 -0
  305. tests/networks/layers/filtering/__init__.py +10 -0
  306. tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
  307. tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
  308. tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
  309. tests/networks/layers/filtering/test_phl_cpu.py +259 -0
  310. tests/networks/layers/filtering/test_phl_cuda.py +167 -0
  311. tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
  312. tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
  313. tests/networks/layers/test_affine_transform.py +385 -0
  314. tests/networks/layers/test_apply_filter.py +89 -0
  315. tests/networks/layers/test_channel_pad.py +51 -0
  316. tests/networks/layers/test_conjugate_gradient.py +56 -0
  317. tests/networks/layers/test_drop_path.py +46 -0
  318. tests/networks/layers/test_gaussian.py +317 -0
  319. tests/networks/layers/test_gaussian_filter.py +206 -0
  320. tests/networks/layers/test_get_layers.py +65 -0
  321. tests/networks/layers/test_gmm.py +314 -0
  322. tests/networks/layers/test_grid_pull.py +93 -0
  323. tests/networks/layers/test_hilbert_transform.py +131 -0
  324. tests/networks/layers/test_lltm.py +62 -0
  325. tests/networks/layers/test_median_filter.py +52 -0
  326. tests/networks/layers/test_polyval.py +55 -0
  327. tests/networks/layers/test_preset_filters.py +136 -0
  328. tests/networks/layers/test_savitzky_golay_filter.py +141 -0
  329. tests/networks/layers/test_separable_filter.py +87 -0
  330. tests/networks/layers/test_skip_connection.py +48 -0
  331. tests/networks/layers/test_vector_quantizer.py +89 -0
  332. tests/networks/layers/test_weight_init.py +50 -0
  333. tests/networks/nets/__init__.py +10 -0
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  680. tests/transforms/test_spatial_resample.py +235 -0
  681. tests/transforms/test_squeezedim.py +62 -0
  682. tests/transforms/test_squeezedimd.py +98 -0
  683. tests/transforms/test_std_shift_intensity.py +76 -0
  684. tests/transforms/test_std_shift_intensityd.py +74 -0
  685. tests/transforms/test_threshold_intensity.py +38 -0
  686. tests/transforms/test_threshold_intensityd.py +58 -0
  687. tests/transforms/test_to_contiguous.py +47 -0
  688. tests/transforms/test_to_cupy.py +112 -0
  689. tests/transforms/test_to_cupyd.py +76 -0
  690. tests/transforms/test_to_device.py +42 -0
  691. tests/transforms/test_to_deviced.py +37 -0
  692. tests/transforms/test_to_numpy.py +85 -0
  693. tests/transforms/test_to_numpyd.py +68 -0
  694. tests/transforms/test_to_pil.py +52 -0
  695. tests/transforms/test_to_pild.py +50 -0
  696. tests/transforms/test_to_tensor.py +60 -0
  697. tests/transforms/test_to_tensord.py +71 -0
  698. tests/transforms/test_torchvision.py +66 -0
  699. tests/transforms/test_torchvisiond.py +63 -0
  700. tests/transforms/test_transform.py +62 -0
  701. tests/transforms/test_transpose.py +41 -0
  702. tests/transforms/test_transposed.py +52 -0
  703. tests/transforms/test_ultrasound_confidence_map_transform.py +711 -0
  704. tests/transforms/test_utils_pytorch_numpy_unification.py +90 -0
  705. tests/transforms/test_vote_ensemble.py +84 -0
  706. tests/transforms/test_vote_ensembled.py +107 -0
  707. tests/transforms/test_with_allow_missing_keys.py +76 -0
  708. tests/transforms/test_zoom.py +120 -0
  709. tests/transforms/test_zoomd.py +94 -0
  710. tests/transforms/transform/__init__.py +10 -0
  711. tests/transforms/transform/test_randomizable.py +52 -0
  712. tests/transforms/transform/test_randomizable_transform_type.py +37 -0
  713. tests/transforms/utility/__init__.py +10 -0
  714. tests/transforms/utility/test_apply_transform_to_points.py +81 -0
  715. tests/transforms/utility/test_apply_transform_to_pointsd.py +185 -0
  716. tests/transforms/utility/test_identity.py +29 -0
  717. tests/transforms/utility/test_identityd.py +30 -0
  718. tests/transforms/utility/test_lambda.py +71 -0
  719. tests/transforms/utility/test_lambdad.py +83 -0
  720. tests/transforms/utility/test_rand_lambda.py +87 -0
  721. tests/transforms/utility/test_rand_lambdad.py +77 -0
  722. tests/transforms/utility/test_simulatedelay.py +36 -0
  723. tests/transforms/utility/test_simulatedelayd.py +36 -0
  724. tests/transforms/utility/test_splitdim.py +52 -0
  725. tests/transforms/utility/test_splitdimd.py +96 -0
  726. tests/transforms/utils/__init__.py +10 -0
  727. tests/transforms/utils/test_correct_crop_centers.py +36 -0
  728. tests/transforms/utils/test_get_unique_labels.py +45 -0
  729. tests/transforms/utils/test_print_transform_backends.py +29 -0
  730. tests/transforms/utils/test_soft_clip.py +125 -0
  731. tests/utils/__init__.py +10 -0
  732. tests/utils/enums/__init__.py +10 -0
  733. tests/utils/enums/test_hovernet_loss.py +190 -0
  734. tests/utils/enums/test_ordering.py +289 -0
  735. tests/utils/enums/test_wsireader.py +663 -0
  736. tests/utils/misc/__init__.py +10 -0
  737. tests/utils/misc/test_ensure_tuple.py +53 -0
  738. tests/utils/misc/test_monai_env_vars.py +44 -0
  739. tests/utils/misc/test_monai_utils_misc.py +103 -0
  740. tests/utils/misc/test_str2bool.py +34 -0
  741. tests/utils/misc/test_str2list.py +33 -0
  742. tests/utils/test_alias.py +44 -0
  743. tests/utils/test_component_store.py +73 -0
  744. tests/utils/test_deprecated.py +455 -0
  745. tests/utils/test_enum_bound_interp.py +75 -0
  746. tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
  747. tests/utils/test_get_package_version.py +34 -0
  748. tests/utils/test_handler_logfile.py +84 -0
  749. tests/utils/test_handler_metric_logger.py +62 -0
  750. tests/utils/test_list_to_dict.py +43 -0
  751. tests/utils/test_look_up_option.py +87 -0
  752. tests/utils/test_optional_import.py +80 -0
  753. tests/utils/test_pad_mode.py +39 -0
  754. tests/utils/test_profiling.py +208 -0
  755. tests/utils/test_rankfilter_dist.py +77 -0
  756. tests/utils/test_require_pkg.py +83 -0
  757. tests/utils/test_sample_slices.py +43 -0
  758. tests/utils/test_set_determinism.py +74 -0
  759. tests/utils/test_squeeze_unsqueeze.py +71 -0
  760. tests/utils/test_state_cacher.py +67 -0
  761. tests/utils/test_torchscript_utils.py +113 -0
  762. tests/utils/test_version.py +91 -0
  763. tests/utils/test_version_after.py +65 -0
  764. tests/utils/type_conversion/__init__.py +10 -0
  765. tests/utils/type_conversion/test_convert_data_type.py +152 -0
  766. tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
  767. tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
  768. tests/visualize/__init__.py +10 -0
  769. tests/visualize/test_img2tensorboard.py +46 -0
  770. tests/visualize/test_occlusion_sensitivity.py +128 -0
  771. tests/visualize/test_plot_2d_or_3d_image.py +74 -0
  772. tests/visualize/test_vis_cam.py +98 -0
  773. tests/visualize/test_vis_gradcam.py +211 -0
  774. tests/visualize/utils/__init__.py +10 -0
  775. tests/visualize/utils/test_blend_images.py +63 -0
  776. tests/visualize/utils/test_matshow3d.py +133 -0
  777. monai_weekly-1.5.dev2505.dist-info/RECORD +0 -427
  778. {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
  779. {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
@@ -0,0 +1,824 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+ from unittest import skipUnless
16
+
17
+ import torch
18
+ from parameterized import parameterized
19
+
20
+ from monai.inferers import LatentDiffusionInferer
21
+ from monai.networks.nets import VQVAE, AutoencoderKL, DiffusionModelUNet, SPADEAutoencoderKL, SPADEDiffusionModelUNet
22
+ from monai.networks.schedulers import DDPMScheduler
23
+ from monai.utils import optional_import
24
+
25
+ _, has_einops = optional_import("einops")
26
+ TEST_CASES = [
27
+ [
28
+ "AutoencoderKL",
29
+ {
30
+ "spatial_dims": 2,
31
+ "in_channels": 1,
32
+ "out_channels": 1,
33
+ "channels": (4, 4),
34
+ "latent_channels": 3,
35
+ "attention_levels": [False, False],
36
+ "num_res_blocks": 1,
37
+ "with_encoder_nonlocal_attn": False,
38
+ "with_decoder_nonlocal_attn": False,
39
+ "norm_num_groups": 4,
40
+ },
41
+ "DiffusionModelUNet",
42
+ {
43
+ "spatial_dims": 2,
44
+ "in_channels": 3,
45
+ "out_channels": 3,
46
+ "channels": [4, 4],
47
+ "norm_num_groups": 4,
48
+ "attention_levels": [False, False],
49
+ "num_res_blocks": 1,
50
+ "num_head_channels": 4,
51
+ },
52
+ (1, 1, 8, 8),
53
+ (1, 3, 4, 4),
54
+ ],
55
+ [
56
+ "VQVAE",
57
+ {
58
+ "spatial_dims": 2,
59
+ "in_channels": 1,
60
+ "out_channels": 1,
61
+ "channels": [4, 4],
62
+ "num_res_layers": 1,
63
+ "num_res_channels": [4, 4],
64
+ "downsample_parameters": ((2, 4, 1, 1), (2, 4, 1, 1)),
65
+ "upsample_parameters": ((2, 4, 1, 1, 0), (2, 4, 1, 1, 0)),
66
+ "num_embeddings": 16,
67
+ "embedding_dim": 3,
68
+ },
69
+ "DiffusionModelUNet",
70
+ {
71
+ "spatial_dims": 2,
72
+ "in_channels": 3,
73
+ "out_channels": 3,
74
+ "channels": [8, 8],
75
+ "norm_num_groups": 8,
76
+ "attention_levels": [False, False],
77
+ "num_res_blocks": 1,
78
+ "num_head_channels": 8,
79
+ },
80
+ (1, 1, 16, 16),
81
+ (1, 3, 4, 4),
82
+ ],
83
+ [
84
+ "VQVAE",
85
+ {
86
+ "spatial_dims": 3,
87
+ "in_channels": 1,
88
+ "out_channels": 1,
89
+ "channels": [4, 4],
90
+ "num_res_layers": 1,
91
+ "num_res_channels": [4, 4],
92
+ "downsample_parameters": ((2, 4, 1, 1), (2, 4, 1, 1)),
93
+ "upsample_parameters": ((2, 4, 1, 1, 0), (2, 4, 1, 1, 0)),
94
+ "num_embeddings": 16,
95
+ "embedding_dim": 3,
96
+ },
97
+ "DiffusionModelUNet",
98
+ {
99
+ "spatial_dims": 3,
100
+ "in_channels": 3,
101
+ "out_channels": 3,
102
+ "channels": [8, 8],
103
+ "norm_num_groups": 8,
104
+ "attention_levels": [False, False],
105
+ "num_res_blocks": 1,
106
+ "num_head_channels": 8,
107
+ },
108
+ (1, 1, 16, 16, 16),
109
+ (1, 3, 4, 4, 4),
110
+ ],
111
+ [
112
+ "AutoencoderKL",
113
+ {
114
+ "spatial_dims": 2,
115
+ "in_channels": 1,
116
+ "out_channels": 1,
117
+ "channels": (4, 4),
118
+ "latent_channels": 3,
119
+ "attention_levels": [False, False],
120
+ "num_res_blocks": 1,
121
+ "with_encoder_nonlocal_attn": False,
122
+ "with_decoder_nonlocal_attn": False,
123
+ "norm_num_groups": 4,
124
+ },
125
+ "SPADEDiffusionModelUNet",
126
+ {
127
+ "spatial_dims": 2,
128
+ "label_nc": 3,
129
+ "in_channels": 3,
130
+ "out_channels": 3,
131
+ "channels": [4, 4],
132
+ "norm_num_groups": 4,
133
+ "attention_levels": [False, False],
134
+ "num_res_blocks": 1,
135
+ "num_head_channels": 4,
136
+ },
137
+ (1, 1, 8, 8),
138
+ (1, 3, 4, 4),
139
+ ],
140
+ ]
141
+ TEST_CASES_DIFF_SHAPES = [
142
+ [
143
+ "AutoencoderKL",
144
+ {
145
+ "spatial_dims": 2,
146
+ "in_channels": 1,
147
+ "out_channels": 1,
148
+ "channels": (4, 4),
149
+ "latent_channels": 3,
150
+ "attention_levels": [False, False],
151
+ "num_res_blocks": 1,
152
+ "with_encoder_nonlocal_attn": False,
153
+ "with_decoder_nonlocal_attn": False,
154
+ "norm_num_groups": 4,
155
+ },
156
+ "DiffusionModelUNet",
157
+ {
158
+ "spatial_dims": 2,
159
+ "in_channels": 3,
160
+ "out_channels": 3,
161
+ "channels": [4, 4],
162
+ "norm_num_groups": 4,
163
+ "attention_levels": [False, False],
164
+ "num_res_blocks": 1,
165
+ "num_head_channels": 4,
166
+ },
167
+ (1, 1, 12, 12),
168
+ (1, 3, 8, 8),
169
+ ],
170
+ [
171
+ "VQVAE",
172
+ {
173
+ "spatial_dims": 2,
174
+ "in_channels": 1,
175
+ "out_channels": 1,
176
+ "channels": [4, 4],
177
+ "num_res_layers": 1,
178
+ "num_res_channels": [4, 4],
179
+ "downsample_parameters": ((2, 4, 1, 1), (2, 4, 1, 1)),
180
+ "upsample_parameters": ((2, 4, 1, 1, 0), (2, 4, 1, 1, 0)),
181
+ "num_embeddings": 16,
182
+ "embedding_dim": 3,
183
+ },
184
+ "DiffusionModelUNet",
185
+ {
186
+ "spatial_dims": 2,
187
+ "in_channels": 3,
188
+ "out_channels": 3,
189
+ "channels": [8, 8],
190
+ "norm_num_groups": 8,
191
+ "attention_levels": [False, False],
192
+ "num_res_blocks": 1,
193
+ "num_head_channels": 8,
194
+ },
195
+ (1, 1, 12, 12),
196
+ (1, 3, 8, 8),
197
+ ],
198
+ [
199
+ "VQVAE",
200
+ {
201
+ "spatial_dims": 3,
202
+ "in_channels": 1,
203
+ "out_channels": 1,
204
+ "channels": [4, 4],
205
+ "num_res_layers": 1,
206
+ "num_res_channels": [4, 4],
207
+ "downsample_parameters": ((2, 4, 1, 1), (2, 4, 1, 1)),
208
+ "upsample_parameters": ((2, 4, 1, 1, 0), (2, 4, 1, 1, 0)),
209
+ "num_embeddings": 16,
210
+ "embedding_dim": 3,
211
+ },
212
+ "DiffusionModelUNet",
213
+ {
214
+ "spatial_dims": 3,
215
+ "in_channels": 3,
216
+ "out_channels": 3,
217
+ "channels": [8, 8],
218
+ "norm_num_groups": 8,
219
+ "attention_levels": [False, False],
220
+ "num_res_blocks": 1,
221
+ "num_head_channels": 8,
222
+ },
223
+ (1, 1, 12, 12, 12),
224
+ (1, 3, 8, 8, 8),
225
+ ],
226
+ [
227
+ "SPADEAutoencoderKL",
228
+ {
229
+ "spatial_dims": 2,
230
+ "label_nc": 3,
231
+ "in_channels": 1,
232
+ "out_channels": 1,
233
+ "channels": (4, 4),
234
+ "latent_channels": 3,
235
+ "attention_levels": [False, False],
236
+ "num_res_blocks": 1,
237
+ "with_encoder_nonlocal_attn": False,
238
+ "with_decoder_nonlocal_attn": False,
239
+ "norm_num_groups": 4,
240
+ },
241
+ "DiffusionModelUNet",
242
+ {
243
+ "spatial_dims": 2,
244
+ "in_channels": 3,
245
+ "out_channels": 3,
246
+ "channels": [4, 4],
247
+ "norm_num_groups": 4,
248
+ "attention_levels": [False, False],
249
+ "num_res_blocks": 1,
250
+ "num_head_channels": 4,
251
+ },
252
+ (1, 1, 8, 8),
253
+ (1, 3, 4, 4),
254
+ ],
255
+ [
256
+ "AutoencoderKL",
257
+ {
258
+ "spatial_dims": 2,
259
+ "in_channels": 1,
260
+ "out_channels": 1,
261
+ "channels": (4, 4),
262
+ "latent_channels": 3,
263
+ "attention_levels": [False, False],
264
+ "num_res_blocks": 1,
265
+ "with_encoder_nonlocal_attn": False,
266
+ "with_decoder_nonlocal_attn": False,
267
+ "norm_num_groups": 4,
268
+ },
269
+ "SPADEDiffusionModelUNet",
270
+ {
271
+ "spatial_dims": 2,
272
+ "label_nc": 3,
273
+ "in_channels": 3,
274
+ "out_channels": 3,
275
+ "channels": [4, 4],
276
+ "norm_num_groups": 4,
277
+ "attention_levels": [False, False],
278
+ "num_res_blocks": 1,
279
+ "num_head_channels": 4,
280
+ },
281
+ (1, 1, 8, 8),
282
+ (1, 3, 4, 4),
283
+ ],
284
+ [
285
+ "SPADEAutoencoderKL",
286
+ {
287
+ "spatial_dims": 2,
288
+ "label_nc": 3,
289
+ "in_channels": 1,
290
+ "out_channels": 1,
291
+ "channels": (4, 4),
292
+ "latent_channels": 3,
293
+ "attention_levels": [False, False],
294
+ "num_res_blocks": 1,
295
+ "with_encoder_nonlocal_attn": False,
296
+ "with_decoder_nonlocal_attn": False,
297
+ "norm_num_groups": 4,
298
+ },
299
+ "SPADEDiffusionModelUNet",
300
+ {
301
+ "spatial_dims": 2,
302
+ "label_nc": 3,
303
+ "in_channels": 3,
304
+ "out_channels": 3,
305
+ "channels": [4, 4],
306
+ "norm_num_groups": 4,
307
+ "attention_levels": [False, False],
308
+ "num_res_blocks": 1,
309
+ "num_head_channels": 4,
310
+ },
311
+ (1, 1, 8, 8),
312
+ (1, 3, 4, 4),
313
+ ],
314
+ ]
315
+
316
+
317
+ class TestDiffusionSamplingInferer(unittest.TestCase):
318
+ @parameterized.expand(TEST_CASES)
319
+ @skipUnless(has_einops, "Requires einops")
320
+ def test_prediction_shape(
321
+ self, ae_model_type, autoencoder_params, dm_model_type, stage_2_params, input_shape, latent_shape
322
+ ):
323
+ stage_1 = None
324
+
325
+ if ae_model_type == "AutoencoderKL":
326
+ stage_1 = AutoencoderKL(**autoencoder_params)
327
+ if ae_model_type == "VQVAE":
328
+ stage_1 = VQVAE(**autoencoder_params)
329
+ if dm_model_type == "SPADEDiffusionModelUNet":
330
+ stage_2 = SPADEDiffusionModelUNet(**stage_2_params)
331
+ else:
332
+ stage_2 = DiffusionModelUNet(**stage_2_params)
333
+
334
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
335
+ stage_1.to(device)
336
+ stage_2.to(device)
337
+ stage_1.eval()
338
+ stage_2.eval()
339
+
340
+ input = torch.randn(input_shape).to(device)
341
+ noise = torch.randn(latent_shape).to(device)
342
+ scheduler = DDPMScheduler(num_train_timesteps=10)
343
+ inferer = LatentDiffusionInferer(scheduler=scheduler, scale_factor=1.0)
344
+ scheduler.set_timesteps(num_inference_steps=10)
345
+ timesteps = torch.randint(0, scheduler.num_train_timesteps, (input_shape[0],), device=input.device).long()
346
+
347
+ if dm_model_type == "SPADEDiffusionModelUNet":
348
+ input_shape_seg = list(input_shape)
349
+ if "label_nc" in stage_2_params.keys():
350
+ input_shape_seg[1] = stage_2_params["label_nc"]
351
+ else:
352
+ input_shape_seg[1] = autoencoder_params["label_nc"]
353
+ input_seg = torch.randn(input_shape_seg).to(device)
354
+ prediction = inferer(
355
+ inputs=input,
356
+ autoencoder_model=stage_1,
357
+ diffusion_model=stage_2,
358
+ seg=input_seg,
359
+ noise=noise,
360
+ timesteps=timesteps,
361
+ )
362
+ else:
363
+ prediction = inferer(
364
+ inputs=input, autoencoder_model=stage_1, diffusion_model=stage_2, noise=noise, timesteps=timesteps
365
+ )
366
+ self.assertEqual(prediction.shape, latent_shape)
367
+
368
+ @parameterized.expand(TEST_CASES)
369
+ @skipUnless(has_einops, "Requires einops")
370
+ def test_sample_shape(
371
+ self, ae_model_type, autoencoder_params, dm_model_type, stage_2_params, input_shape, latent_shape
372
+ ):
373
+ stage_1 = None
374
+
375
+ if ae_model_type == "AutoencoderKL":
376
+ stage_1 = AutoencoderKL(**autoencoder_params)
377
+ if ae_model_type == "VQVAE":
378
+ stage_1 = VQVAE(**autoencoder_params)
379
+ if dm_model_type == "SPADEDiffusionModelUNet":
380
+ stage_2 = SPADEDiffusionModelUNet(**stage_2_params)
381
+ else:
382
+ stage_2 = DiffusionModelUNet(**stage_2_params)
383
+
384
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
385
+ stage_1.to(device)
386
+ stage_2.to(device)
387
+ stage_1.eval()
388
+ stage_2.eval()
389
+
390
+ noise = torch.randn(latent_shape).to(device)
391
+ scheduler = DDPMScheduler(num_train_timesteps=10)
392
+ inferer = LatentDiffusionInferer(scheduler=scheduler, scale_factor=1.0)
393
+ scheduler.set_timesteps(num_inference_steps=10)
394
+
395
+ if ae_model_type == "SPADEAutoencoderKL" or dm_model_type == "SPADEDiffusionModelUNet":
396
+ input_shape_seg = list(input_shape)
397
+ if "label_nc" in stage_2_params.keys():
398
+ input_shape_seg[1] = stage_2_params["label_nc"]
399
+ else:
400
+ input_shape_seg[1] = autoencoder_params["label_nc"]
401
+ input_seg = torch.randn(input_shape_seg).to(device)
402
+ sample = inferer.sample(
403
+ input_noise=noise,
404
+ autoencoder_model=stage_1,
405
+ diffusion_model=stage_2,
406
+ scheduler=scheduler,
407
+ seg=input_seg,
408
+ )
409
+ else:
410
+ sample = inferer.sample(
411
+ input_noise=noise, autoencoder_model=stage_1, diffusion_model=stage_2, scheduler=scheduler
412
+ )
413
+ self.assertEqual(sample.shape, input_shape)
414
+
415
+ @parameterized.expand(TEST_CASES)
416
+ @skipUnless(has_einops, "Requires einops")
417
+ def test_sample_intermediates(
418
+ self, ae_model_type, autoencoder_params, dm_model_type, stage_2_params, input_shape, latent_shape
419
+ ):
420
+ stage_1 = None
421
+
422
+ if ae_model_type == "AutoencoderKL":
423
+ stage_1 = AutoencoderKL(**autoencoder_params)
424
+ if ae_model_type == "VQVAE":
425
+ stage_1 = VQVAE(**autoencoder_params)
426
+ if ae_model_type == "SPADEAutoencoderKL":
427
+ stage_1 = SPADEAutoencoderKL(**autoencoder_params)
428
+ if dm_model_type == "SPADEDiffusionModelUNet":
429
+ stage_2 = SPADEDiffusionModelUNet(**stage_2_params)
430
+ else:
431
+ stage_2 = DiffusionModelUNet(**stage_2_params)
432
+
433
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
434
+ stage_1.to(device)
435
+ stage_2.to(device)
436
+ stage_1.eval()
437
+ stage_2.eval()
438
+
439
+ noise = torch.randn(latent_shape).to(device)
440
+ scheduler = DDPMScheduler(num_train_timesteps=10)
441
+ inferer = LatentDiffusionInferer(scheduler=scheduler, scale_factor=1.0)
442
+ scheduler.set_timesteps(num_inference_steps=10)
443
+
444
+ if ae_model_type == "SPADEAutoencoderKL" or dm_model_type == "SPADEDiffusionModelUNet":
445
+ input_shape_seg = list(input_shape)
446
+ if "label_nc" in stage_2_params.keys():
447
+ input_shape_seg[1] = stage_2_params["label_nc"]
448
+ else:
449
+ input_shape_seg[1] = autoencoder_params["label_nc"]
450
+ input_seg = torch.randn(input_shape_seg).to(device)
451
+ sample, intermediates = inferer.sample(
452
+ input_noise=noise,
453
+ autoencoder_model=stage_1,
454
+ diffusion_model=stage_2,
455
+ scheduler=scheduler,
456
+ seg=input_seg,
457
+ save_intermediates=True,
458
+ intermediate_steps=1,
459
+ )
460
+ else:
461
+ sample, intermediates = inferer.sample(
462
+ input_noise=noise,
463
+ autoencoder_model=stage_1,
464
+ diffusion_model=stage_2,
465
+ scheduler=scheduler,
466
+ save_intermediates=True,
467
+ intermediate_steps=1,
468
+ )
469
+ self.assertEqual(len(intermediates), 10)
470
+ self.assertEqual(intermediates[0].shape, input_shape)
471
+
472
+ @parameterized.expand(TEST_CASES)
473
+ @skipUnless(has_einops, "Requires einops")
474
+ def test_get_likelihoods(
475
+ self, ae_model_type, autoencoder_params, dm_model_type, stage_2_params, input_shape, latent_shape
476
+ ):
477
+ stage_1 = None
478
+
479
+ if ae_model_type == "AutoencoderKL":
480
+ stage_1 = AutoencoderKL(**autoencoder_params)
481
+ if ae_model_type == "VQVAE":
482
+ stage_1 = VQVAE(**autoencoder_params)
483
+ if ae_model_type == "SPADEAutoencoderKL":
484
+ stage_1 = SPADEAutoencoderKL(**autoencoder_params)
485
+ if dm_model_type == "SPADEDiffusionModelUNet":
486
+ stage_2 = SPADEDiffusionModelUNet(**stage_2_params)
487
+ else:
488
+ stage_2 = DiffusionModelUNet(**stage_2_params)
489
+
490
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
491
+ stage_1.to(device)
492
+ stage_2.to(device)
493
+ stage_1.eval()
494
+ stage_2.eval()
495
+
496
+ input = torch.randn(input_shape).to(device)
497
+ scheduler = DDPMScheduler(num_train_timesteps=10)
498
+ inferer = LatentDiffusionInferer(scheduler=scheduler, scale_factor=1.0)
499
+ scheduler.set_timesteps(num_inference_steps=10)
500
+
501
+ if dm_model_type == "SPADEDiffusionModelUNet":
502
+ input_shape_seg = list(input_shape)
503
+ if "label_nc" in stage_2_params.keys():
504
+ input_shape_seg[1] = stage_2_params["label_nc"]
505
+ else:
506
+ input_shape_seg[1] = autoencoder_params["label_nc"]
507
+ input_seg = torch.randn(input_shape_seg).to(device)
508
+ sample, intermediates = inferer.get_likelihood(
509
+ inputs=input,
510
+ autoencoder_model=stage_1,
511
+ diffusion_model=stage_2,
512
+ scheduler=scheduler,
513
+ save_intermediates=True,
514
+ seg=input_seg,
515
+ )
516
+ else:
517
+ sample, intermediates = inferer.get_likelihood(
518
+ inputs=input,
519
+ autoencoder_model=stage_1,
520
+ diffusion_model=stage_2,
521
+ scheduler=scheduler,
522
+ save_intermediates=True,
523
+ )
524
+ self.assertEqual(len(intermediates), 10)
525
+ self.assertEqual(intermediates[0].shape, latent_shape)
526
+
527
+ @parameterized.expand(TEST_CASES)
528
+ @skipUnless(has_einops, "Requires einops")
529
+ def test_resample_likelihoods(
530
+ self, ae_model_type, autoencoder_params, dm_model_type, stage_2_params, input_shape, latent_shape
531
+ ):
532
+ stage_1 = None
533
+
534
+ if ae_model_type == "AutoencoderKL":
535
+ stage_1 = AutoencoderKL(**autoencoder_params)
536
+ if ae_model_type == "VQVAE":
537
+ stage_1 = VQVAE(**autoencoder_params)
538
+ if ae_model_type == "SPADEAutoencoderKL":
539
+ stage_1 = SPADEAutoencoderKL(**autoencoder_params)
540
+ if dm_model_type == "SPADEDiffusionModelUNet":
541
+ stage_2 = SPADEDiffusionModelUNet(**stage_2_params)
542
+ else:
543
+ stage_2 = DiffusionModelUNet(**stage_2_params)
544
+
545
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
546
+ stage_1.to(device)
547
+ stage_2.to(device)
548
+ stage_1.eval()
549
+ stage_2.eval()
550
+
551
+ input = torch.randn(input_shape).to(device)
552
+ scheduler = DDPMScheduler(num_train_timesteps=10)
553
+ inferer = LatentDiffusionInferer(scheduler=scheduler, scale_factor=1.0)
554
+ scheduler.set_timesteps(num_inference_steps=10)
555
+
556
+ if dm_model_type == "SPADEDiffusionModelUNet":
557
+ input_shape_seg = list(input_shape)
558
+ if "label_nc" in stage_2_params.keys():
559
+ input_shape_seg[1] = stage_2_params["label_nc"]
560
+ else:
561
+ input_shape_seg[1] = autoencoder_params["label_nc"]
562
+ input_seg = torch.randn(input_shape_seg).to(device)
563
+ sample, intermediates = inferer.get_likelihood(
564
+ inputs=input,
565
+ autoencoder_model=stage_1,
566
+ diffusion_model=stage_2,
567
+ scheduler=scheduler,
568
+ save_intermediates=True,
569
+ resample_latent_likelihoods=True,
570
+ seg=input_seg,
571
+ )
572
+ else:
573
+ sample, intermediates = inferer.get_likelihood(
574
+ inputs=input,
575
+ autoencoder_model=stage_1,
576
+ diffusion_model=stage_2,
577
+ scheduler=scheduler,
578
+ save_intermediates=True,
579
+ resample_latent_likelihoods=True,
580
+ )
581
+ self.assertEqual(len(intermediates), 10)
582
+ self.assertEqual(intermediates[0].shape[2:], input_shape[2:])
583
+
584
+ @parameterized.expand(TEST_CASES)
585
+ @skipUnless(has_einops, "Requires einops")
586
+ def test_prediction_shape_conditioned_concat(
587
+ self, ae_model_type, autoencoder_params, dm_model_type, stage_2_params, input_shape, latent_shape
588
+ ):
589
+ stage_1 = None
590
+
591
+ if ae_model_type == "AutoencoderKL":
592
+ stage_1 = AutoencoderKL(**autoencoder_params)
593
+ if ae_model_type == "VQVAE":
594
+ stage_1 = VQVAE(**autoencoder_params)
595
+ if ae_model_type == "SPADEAutoencoderKL":
596
+ stage_1 = SPADEAutoencoderKL(**autoencoder_params)
597
+ stage_2_params = stage_2_params.copy()
598
+ n_concat_channel = 3
599
+ stage_2_params["in_channels"] = stage_2_params["in_channels"] + n_concat_channel
600
+ if dm_model_type == "SPADEDiffusionModelUNet":
601
+ stage_2 = SPADEDiffusionModelUNet(**stage_2_params)
602
+ else:
603
+ stage_2 = DiffusionModelUNet(**stage_2_params)
604
+
605
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
606
+ stage_1.to(device)
607
+ stage_2.to(device)
608
+ stage_1.eval()
609
+ stage_2.eval()
610
+
611
+ input = torch.randn(input_shape).to(device)
612
+ noise = torch.randn(latent_shape).to(device)
613
+ conditioning_shape = list(latent_shape)
614
+ conditioning_shape[1] = n_concat_channel
615
+ conditioning = torch.randn(conditioning_shape).to(device)
616
+
617
+ scheduler = DDPMScheduler(num_train_timesteps=10)
618
+ inferer = LatentDiffusionInferer(scheduler=scheduler, scale_factor=1.0)
619
+ scheduler.set_timesteps(num_inference_steps=10)
620
+
621
+ timesteps = torch.randint(0, scheduler.num_train_timesteps, (input_shape[0],), device=input.device).long()
622
+
623
+ if dm_model_type == "SPADEDiffusionModelUNet":
624
+ input_shape_seg = list(input_shape)
625
+ if "label_nc" in stage_2_params.keys():
626
+ input_shape_seg[1] = stage_2_params["label_nc"]
627
+ else:
628
+ input_shape_seg[1] = autoencoder_params["label_nc"]
629
+ input_seg = torch.randn(input_shape_seg).to(device)
630
+ prediction = inferer(
631
+ inputs=input,
632
+ autoencoder_model=stage_1,
633
+ diffusion_model=stage_2,
634
+ noise=noise,
635
+ timesteps=timesteps,
636
+ condition=conditioning,
637
+ mode="concat",
638
+ seg=input_seg,
639
+ )
640
+ else:
641
+ prediction = inferer(
642
+ inputs=input,
643
+ autoencoder_model=stage_1,
644
+ diffusion_model=stage_2,
645
+ noise=noise,
646
+ timesteps=timesteps,
647
+ condition=conditioning,
648
+ mode="concat",
649
+ )
650
+ self.assertEqual(prediction.shape, latent_shape)
651
+
652
+ @parameterized.expand(TEST_CASES)
653
+ @skipUnless(has_einops, "Requires einops")
654
+ def test_sample_shape_conditioned_concat(
655
+ self, ae_model_type, autoencoder_params, dm_model_type, stage_2_params, input_shape, latent_shape
656
+ ):
657
+ stage_1 = None
658
+
659
+ if ae_model_type == "AutoencoderKL":
660
+ stage_1 = AutoencoderKL(**autoencoder_params)
661
+ if ae_model_type == "VQVAE":
662
+ stage_1 = VQVAE(**autoencoder_params)
663
+ if ae_model_type == "SPADEAutoencoderKL":
664
+ stage_1 = SPADEAutoencoderKL(**autoencoder_params)
665
+ stage_2_params = stage_2_params.copy()
666
+ n_concat_channel = 3
667
+ stage_2_params["in_channels"] = stage_2_params["in_channels"] + n_concat_channel
668
+ if dm_model_type == "SPADEDiffusionModelUNet":
669
+ stage_2 = SPADEDiffusionModelUNet(**stage_2_params)
670
+ else:
671
+ stage_2 = DiffusionModelUNet(**stage_2_params)
672
+
673
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
674
+ stage_1.to(device)
675
+ stage_2.to(device)
676
+ stage_1.eval()
677
+ stage_2.eval()
678
+
679
+ noise = torch.randn(latent_shape).to(device)
680
+ conditioning_shape = list(latent_shape)
681
+ conditioning_shape[1] = n_concat_channel
682
+ conditioning = torch.randn(conditioning_shape).to(device)
683
+
684
+ scheduler = DDPMScheduler(num_train_timesteps=10)
685
+ inferer = LatentDiffusionInferer(scheduler=scheduler, scale_factor=1.0)
686
+ scheduler.set_timesteps(num_inference_steps=10)
687
+
688
+ if dm_model_type == "SPADEDiffusionModelUNet":
689
+ input_shape_seg = list(input_shape)
690
+ if "label_nc" in stage_2_params.keys():
691
+ input_shape_seg[1] = stage_2_params["label_nc"]
692
+ else:
693
+ input_shape_seg[1] = autoencoder_params["label_nc"]
694
+ input_seg = torch.randn(input_shape_seg).to(device)
695
+ sample = inferer.sample(
696
+ input_noise=noise,
697
+ autoencoder_model=stage_1,
698
+ diffusion_model=stage_2,
699
+ scheduler=scheduler,
700
+ conditioning=conditioning,
701
+ mode="concat",
702
+ seg=input_seg,
703
+ )
704
+ else:
705
+ sample = inferer.sample(
706
+ input_noise=noise,
707
+ autoencoder_model=stage_1,
708
+ diffusion_model=stage_2,
709
+ scheduler=scheduler,
710
+ conditioning=conditioning,
711
+ mode="concat",
712
+ )
713
+ self.assertEqual(sample.shape, input_shape)
714
+
715
+ @parameterized.expand(TEST_CASES_DIFF_SHAPES)
716
+ @skipUnless(has_einops, "Requires einops")
717
+ def test_sample_shape_different_latents(
718
+ self, ae_model_type, autoencoder_params, dm_model_type, stage_2_params, input_shape, latent_shape
719
+ ):
720
+ stage_1 = None
721
+
722
+ if ae_model_type == "AutoencoderKL":
723
+ stage_1 = AutoencoderKL(**autoencoder_params)
724
+ if ae_model_type == "VQVAE":
725
+ stage_1 = VQVAE(**autoencoder_params)
726
+ if ae_model_type == "SPADEAutoencoderKL":
727
+ stage_1 = SPADEAutoencoderKL(**autoencoder_params)
728
+ if dm_model_type == "SPADEDiffusionModelUNet":
729
+ stage_2 = SPADEDiffusionModelUNet(**stage_2_params)
730
+ else:
731
+ stage_2 = DiffusionModelUNet(**stage_2_params)
732
+
733
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
734
+ stage_1.to(device)
735
+ stage_2.to(device)
736
+ stage_1.eval()
737
+ stage_2.eval()
738
+
739
+ input = torch.randn(input_shape).to(device)
740
+ noise = torch.randn(latent_shape).to(device)
741
+ scheduler = DDPMScheduler(num_train_timesteps=10)
742
+ # We infer the VAE shape
743
+ autoencoder_latent_shape = [i // (2 ** (len(autoencoder_params["channels"]) - 1)) for i in input_shape[2:]]
744
+ inferer = LatentDiffusionInferer(
745
+ scheduler=scheduler,
746
+ scale_factor=1.0,
747
+ ldm_latent_shape=list(latent_shape[2:]),
748
+ autoencoder_latent_shape=autoencoder_latent_shape,
749
+ )
750
+ scheduler.set_timesteps(num_inference_steps=10)
751
+
752
+ timesteps = torch.randint(0, scheduler.num_train_timesteps, (input_shape[0],), device=input.device).long()
753
+
754
+ if dm_model_type == "SPADEDiffusionModelUNet":
755
+ input_shape_seg = list(input_shape)
756
+ if "label_nc" in stage_2_params.keys():
757
+ input_shape_seg[1] = stage_2_params["label_nc"]
758
+ else:
759
+ input_shape_seg[1] = autoencoder_params["label_nc"]
760
+ input_seg = torch.randn(input_shape_seg).to(device)
761
+ prediction = inferer(
762
+ inputs=input,
763
+ autoencoder_model=stage_1,
764
+ diffusion_model=stage_2,
765
+ noise=noise,
766
+ timesteps=timesteps,
767
+ seg=input_seg,
768
+ )
769
+ else:
770
+ prediction = inferer(
771
+ inputs=input, autoencoder_model=stage_1, diffusion_model=stage_2, noise=noise, timesteps=timesteps
772
+ )
773
+ self.assertEqual(prediction.shape, latent_shape)
774
+
775
+ @skipUnless(has_einops, "Requires einops")
776
+ def test_incompatible_spade_setup(self):
777
+ stage_1 = SPADEAutoencoderKL(
778
+ spatial_dims=2,
779
+ label_nc=6,
780
+ in_channels=1,
781
+ out_channels=1,
782
+ channels=(4, 4),
783
+ latent_channels=3,
784
+ attention_levels=[False, False],
785
+ num_res_blocks=1,
786
+ with_encoder_nonlocal_attn=False,
787
+ with_decoder_nonlocal_attn=False,
788
+ norm_num_groups=4,
789
+ )
790
+ stage_2 = SPADEDiffusionModelUNet(
791
+ spatial_dims=2,
792
+ label_nc=3,
793
+ in_channels=3,
794
+ out_channels=3,
795
+ channels=[4, 4],
796
+ norm_num_groups=4,
797
+ attention_levels=[False, False],
798
+ num_res_blocks=1,
799
+ num_head_channels=4,
800
+ )
801
+
802
+ device = "cuda:0" if torch.cuda.is_available() else "cpu"
803
+ stage_1.to(device)
804
+ stage_2.to(device)
805
+ stage_1.eval()
806
+ stage_2.eval()
807
+ noise = torch.randn((1, 3, 4, 4)).to(device)
808
+ input_seg = torch.randn((1, 3, 8, 8)).to(device)
809
+ scheduler = DDPMScheduler(num_train_timesteps=10)
810
+ inferer = LatentDiffusionInferer(scheduler=scheduler, scale_factor=1.0)
811
+ scheduler.set_timesteps(num_inference_steps=10)
812
+
813
+ with self.assertRaises(ValueError):
814
+ _ = inferer.sample(
815
+ input_noise=noise,
816
+ autoencoder_model=stage_1,
817
+ diffusion_model=stage_2,
818
+ scheduler=scheduler,
819
+ seg=input_seg,
820
+ )
821
+
822
+
823
+ if __name__ == "__main__":
824
+ unittest.main()