monai-weekly 1.5.dev2505__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/meta_tensor.py +5 -0
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/jupyter_utils.py +1 -1
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- monai/visualize/img2tensorboard.py +2 -2
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
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- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2505.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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from parameterized import parameterized
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from monai.transforms import generate_label_classes_crop_centers
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from monai.utils.misc import set_determinism
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from tests.test_utils import TEST_NDARRAYS, assert_allclose
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TEST_CASE_1 = [
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{
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"spatial_size": [2, 2, 2],
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"num_samples": 2,
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"ratios": [1, 2],
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"label_spatial_shape": [3, 3, 3],
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"indices": [[3, 12, 21], [1, 9, 18]],
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},
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tuple,
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2,
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3,
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]
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TEST_CASE_2 = [
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{
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"spatial_size": [2, 2, 2],
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"num_samples": 1,
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"ratios": None,
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"label_spatial_shape": [3, 3, 3],
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"indices": [[3, 12, 21], [1, 9, 18]],
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},
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tuple,
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1,
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3,
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]
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class TestGenerateLabelClassesCropCenters(unittest.TestCase):
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@parameterized.expand([TEST_CASE_1, TEST_CASE_2])
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def test_type_shape(self, input_data, expected_type, expected_count, expected_shape):
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results = []
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for p in TEST_NDARRAYS + (None,):
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input_data = deepcopy(input_data)
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if p is not None:
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input_data["indices"] = p(input_data["indices"])
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set_determinism(0)
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result = generate_label_classes_crop_centers(**input_data)
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self.assertIsInstance(result, expected_type)
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self.assertEqual(len(result), expected_count)
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self.assertEqual(len(result[0]), expected_shape)
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# check for consistency between numpy, torch and torch.cuda
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results.append(result)
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if len(results) > 1:
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for x, y in zip(result[0], result[-1]):
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assert_allclose(x, y, type_test=False)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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from parameterized import parameterized
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from monai.transforms import generate_pos_neg_label_crop_centers
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from monai.utils.misc import set_determinism
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from tests.test_utils import TEST_NDARRAYS, assert_allclose
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TESTS = [
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[
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{
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"spatial_size": [2, 2, 2],
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"num_samples": 2,
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"pos_ratio": 1.0,
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"label_spatial_shape": [3, 3, 3],
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"fg_indices": [1, 9, 18],
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"bg_indices": [3, 12, 21],
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},
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tuple,
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2,
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3,
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],
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[
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{
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"spatial_size": [2, 2, 2],
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"num_samples": 2,
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"pos_ratio": 0.0,
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"label_spatial_shape": [3, 3, 3],
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"fg_indices": [],
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"bg_indices": [3, 12, 21],
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},
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tuple,
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2,
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3,
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],
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]
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class TestGeneratePosNegLabelCropCenters(unittest.TestCase):
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@parameterized.expand(TESTS)
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def test_type_shape(self, input_data, expected_type, expected_count, expected_shape):
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results = []
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for p in TEST_NDARRAYS + (None,):
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input_data = deepcopy(input_data)
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if p is not None:
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for k in ["fg_indices", "bg_indices"]:
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input_data[k] = p(input_data[k])
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set_determinism(0)
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result = generate_pos_neg_label_crop_centers(**input_data)
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self.assertIsInstance(result, expected_type)
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self.assertEqual(len(result), expected_count)
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self.assertEqual(len(result[0]), expected_shape)
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# check for consistency between numpy, torch and torch.cuda
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results.append(result)
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if len(results) > 1:
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# compare every crop center
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for x, y in zip(results[0], results[-1]):
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assert_allclose(x, y, type_test=False)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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from parameterized import parameterized
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from monai.transforms import generate_spatial_bounding_box
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from tests.test_utils import TEST_NDARRAYS
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TESTS = []
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for p in TEST_NDARRAYS:
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TESTS.append(
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[
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{
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"img": p(
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np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 1, 2, 1, 0], [0, 0, 0, 0, 0]]])
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),
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"select_fn": lambda x: x > 0,
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"channel_indices": None,
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"margin": 0,
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},
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([1, 1], [4, 4]),
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]
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)
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TESTS.append(
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[
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{
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"img": p(
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np.array([[[0, 0, 0, 0, 0], [0, 1, 1, 1, 0], [0, 1, 3, 1, 0], [0, 1, 1, 1, 0], [0, 0, 0, 0, 0]]])
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),
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"select_fn": lambda x: x > 1,
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"channel_indices": None,
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"margin": 0,
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},
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([2, 2], [3, 3]),
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]
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)
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TESTS.append(
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[
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{
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"img": p(
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np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 1, 2, 1, 0], [0, 0, 0, 0, 0]]])
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),
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"select_fn": lambda x: x > 0,
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"channel_indices": 0,
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"margin": 0,
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},
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([1, 1], [4, 4]),
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]
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)
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TESTS.append(
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[
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{
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"img": p(
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np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]]])
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),
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"select_fn": lambda x: x > 0,
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"channel_indices": None,
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"margin": 1,
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},
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([0, 0], [4, 5]),
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]
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)
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TESTS.append(
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[
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{
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"img": p(
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np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 1, 2, 1, 0], [0, 0, 0, 0, 0]]])
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),
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"select_fn": lambda x: x > 0,
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"channel_indices": None,
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"margin": [2, 1],
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"allow_smaller": False,
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},
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([-1, 0], [6, 5]),
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]
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)
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TESTS.append(
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[
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{
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"img": p(
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np.array([[[0, 0, 0, 0, 0], [0, 1, 2, 1, 0], [0, 2, 3, 2, 0], [0, 1, 2, 1, 0], [0, 0, 0, 0, 0]]])
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),
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"select_fn": lambda x: x > 0,
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"channel_indices": None,
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"margin": [2, 1],
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"allow_smaller": True,
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},
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([0, 0], [5, 5]),
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]
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)
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class TestGenerateSpatialBoundingBox(unittest.TestCase):
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@parameterized.expand(TESTS)
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def test_value(self, input_data, expected_box):
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result = generate_spatial_bounding_box(**input_data)
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self.assertTupleEqual(result, expected_box)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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from parameterized import parameterized
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from monai.transforms import get_extreme_points
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from tests.test_utils import TEST_NDARRAYS
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TESTS = []
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for p in TEST_NDARRAYS:
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TESTS.append(
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[
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{
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"img": p(np.array([[0, 1, 0], [0, 0, 1], [0, 1, 0], [1, 0, 0]])),
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"rand_state": np.random,
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"background": 0,
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"pert": 0.0,
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},
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[(0, 1), (3, 0), (3, 0), (1, 2)],
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]
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)
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TESTS.append(
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[
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{
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"img": p(np.array([[0, 1, 0], [1, 1, 1], [0, 1, 0], [0, 1, 0]])),
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"rand_state": np.random,
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"background": 0,
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"pert": 0.0,
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},
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[(0, 1), (3, 1), (1, 0), (1, 2)],
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]
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)
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class TestGetExtremePoints(unittest.TestCase):
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@parameterized.expand(TESTS)
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def test_type_shape(self, input_data, expected):
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result = get_extreme_points(**input_data)
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self.assertEqual(result, expected)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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import numpy as np
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from parameterized import parameterized
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20
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from monai.data.synthetic import create_test_image_2d, create_test_image_3d
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21
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from monai.transforms import GibbsNoise
|
22
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+
from monai.utils.misc import set_determinism
|
23
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+
from monai.utils.module import optional_import
|
24
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+
from tests.test_utils import TEST_NDARRAYS, assert_allclose
|
25
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+
|
26
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+
_, has_torch_fft = optional_import("torch.fft", name="fftshift")
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+
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TEST_CASES = []
|
29
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for shape in ((128, 64), (64, 48, 80)):
|
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+
for input_type in TEST_NDARRAYS if has_torch_fft else [np.array]:
|
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TEST_CASES.append((shape, input_type))
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+
|
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|
34
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class TestGibbsNoise(unittest.TestCase):
|
35
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def setUp(self):
|
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set_determinism(0)
|
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super().setUp()
|
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+
|
39
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+
def tearDown(self):
|
40
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set_determinism(None)
|
41
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+
|
42
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+
@staticmethod
|
43
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+
def get_data(im_shape, input_type):
|
44
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+
create_test_image = create_test_image_2d if len(im_shape) == 2 else create_test_image_3d
|
45
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+
im = create_test_image(*im_shape, num_objs=4, rad_max=20, noise_max=0.0, num_seg_classes=5)[0][None]
|
46
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return input_type(im)
|
47
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+
|
48
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+
@parameterized.expand(TEST_CASES)
|
49
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+
def test_same_result(self, im_shape, input_type):
|
50
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+
im = self.get_data(im_shape, input_type)
|
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alpha = 0.8
|
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t = GibbsNoise(alpha)
|
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out1 = t(deepcopy(im))
|
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+
out2 = t(deepcopy(im))
|
55
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+
assert_allclose(out1, out2, rtol=1e-7, atol=0, type_test="tensor")
|
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+
|
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+
@parameterized.expand(TEST_CASES)
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+
def test_identity(self, im_shape, input_type):
|
59
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+
im = self.get_data(im_shape, input_type)
|
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+
alpha = 0.0
|
61
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+
t = GibbsNoise(alpha)
|
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out = t(deepcopy(im))
|
63
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assert_allclose(out, im, atol=1e-2, rtol=1e-7, type_test="tensor")
|
64
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+
|
65
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+
@parameterized.expand(TEST_CASES)
|
66
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+
def test_alpha_1(self, im_shape, input_type):
|
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+
im = self.get_data(im_shape, input_type)
|
68
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+
alpha = 1.0
|
69
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+
t = GibbsNoise(alpha)
|
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+
out = t(deepcopy(im))
|
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assert_allclose(out, 0 * im, rtol=1e-7, atol=0, type_test="tensor")
|
72
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+
|
73
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+
|
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+
if __name__ == "__main__":
|
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unittest.main()
|
@@ -0,0 +1,88 @@
|
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1
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# Copyright (c) MONAI Consortium
|
2
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# Licensed under the Apache License, Version 2.0 (the "License");
|
3
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+
# you may not use this file except in compliance with the License.
|
4
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+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
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+
|
14
|
+
import unittest
|
15
|
+
from copy import deepcopy
|
16
|
+
|
17
|
+
import numpy as np
|
18
|
+
from parameterized import parameterized
|
19
|
+
|
20
|
+
from monai.data.synthetic import create_test_image_2d, create_test_image_3d
|
21
|
+
from monai.transforms import GibbsNoised
|
22
|
+
from monai.utils.misc import set_determinism
|
23
|
+
from monai.utils.module import optional_import
|
24
|
+
from tests.test_utils import TEST_NDARRAYS, assert_allclose
|
25
|
+
|
26
|
+
_, has_torch_fft = optional_import("torch.fft", name="fftshift")
|
27
|
+
|
28
|
+
TEST_CASES = []
|
29
|
+
for shape in ((128, 64), (64, 48, 80)):
|
30
|
+
for input_type in TEST_NDARRAYS if has_torch_fft else [np.array]:
|
31
|
+
TEST_CASES.append((shape, input_type))
|
32
|
+
KEYS = ["im", "label"]
|
33
|
+
|
34
|
+
|
35
|
+
class TestGibbsNoised(unittest.TestCase):
|
36
|
+
def setUp(self):
|
37
|
+
set_determinism(0)
|
38
|
+
super().setUp()
|
39
|
+
|
40
|
+
def tearDown(self):
|
41
|
+
set_determinism(None)
|
42
|
+
|
43
|
+
@staticmethod
|
44
|
+
def get_data(im_shape, input_type):
|
45
|
+
create_test_image = create_test_image_2d if len(im_shape) == 2 else create_test_image_3d
|
46
|
+
ims = create_test_image(*im_shape, rad_max=20, noise_max=0.0, num_seg_classes=5)
|
47
|
+
return {k: input_type(deepcopy(v)) for k, v in zip(KEYS, ims)}
|
48
|
+
|
49
|
+
@parameterized.expand(TEST_CASES)
|
50
|
+
def test_same_result(self, im_shape, input_type):
|
51
|
+
data = self.get_data(im_shape, input_type)
|
52
|
+
alpha = 0.8
|
53
|
+
t = GibbsNoised(KEYS, alpha)
|
54
|
+
out1 = t(deepcopy(data))
|
55
|
+
out2 = t(deepcopy(data))
|
56
|
+
for k in KEYS:
|
57
|
+
assert_allclose(out1[k], out2[k], rtol=1e-7, atol=0, type_test="tensor")
|
58
|
+
|
59
|
+
@parameterized.expand(TEST_CASES)
|
60
|
+
def test_identity(self, im_shape, input_type):
|
61
|
+
data = self.get_data(im_shape, input_type)
|
62
|
+
alpha = 0.0
|
63
|
+
t = GibbsNoised(KEYS, alpha)
|
64
|
+
out = t(deepcopy(data))
|
65
|
+
for k in KEYS:
|
66
|
+
assert_allclose(out[k], data[k], atol=1e-2, type_test="tensor")
|
67
|
+
|
68
|
+
@parameterized.expand(TEST_CASES)
|
69
|
+
def test_alpha_1(self, im_shape, input_type):
|
70
|
+
data = self.get_data(im_shape, input_type)
|
71
|
+
alpha = 1.0
|
72
|
+
t = GibbsNoised(KEYS, alpha)
|
73
|
+
out = t(deepcopy(data))
|
74
|
+
for k in KEYS:
|
75
|
+
assert_allclose(out[k], 0.0 * data[k], atol=1e-2, type_test="tensor")
|
76
|
+
|
77
|
+
@parameterized.expand(TEST_CASES)
|
78
|
+
def test_dict_matches(self, im_shape, input_type):
|
79
|
+
data = self.get_data(im_shape, input_type)
|
80
|
+
data = {KEYS[0]: deepcopy(data[KEYS[0]]), KEYS[1]: deepcopy(data[KEYS[0]])}
|
81
|
+
alpha = 1.0
|
82
|
+
t = GibbsNoised(KEYS, alpha)
|
83
|
+
out = t(deepcopy(data))
|
84
|
+
assert_allclose(out[KEYS[0]], out[KEYS[1]], rtol=1e-7, atol=0, type_test="tensor")
|
85
|
+
|
86
|
+
|
87
|
+
if __name__ == "__main__":
|
88
|
+
unittest.main()
|
@@ -0,0 +1,113 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.transforms import GridDistortion
|
20
|
+
from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose
|
21
|
+
|
22
|
+
TESTS = []
|
23
|
+
for p in TEST_NDARRAYS_ALL:
|
24
|
+
TESTS.append(
|
25
|
+
[
|
26
|
+
dict(num_cells=3, distort_steps=[(1.5,) * 4] * 2, mode="nearest", padding_mode="zeros"),
|
27
|
+
p(np.indices([6, 6]).astype(np.float32)),
|
28
|
+
p(
|
29
|
+
np.array(
|
30
|
+
[
|
31
|
+
[
|
32
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
33
|
+
[3.0, 3.0, 3.0, 0.0, 0.0, 0.0],
|
34
|
+
[3.0, 3.0, 3.0, 0.0, 0.0, 0.0],
|
35
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
36
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
37
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
38
|
+
],
|
39
|
+
[
|
40
|
+
[0.0, 3.0, 3.0, 0.0, 0.0, 0.0],
|
41
|
+
[0.0, 3.0, 3.0, 0.0, 0.0, 0.0],
|
42
|
+
[0.0, 3.0, 3.0, 0.0, 0.0, 0.0],
|
43
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
44
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
45
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
46
|
+
],
|
47
|
+
]
|
48
|
+
).astype(np.float32)
|
49
|
+
),
|
50
|
+
]
|
51
|
+
)
|
52
|
+
num_cells = (2, 2)
|
53
|
+
distort_steps = [(1.5,) * (1 + num_cells[0]), (1.0,) * (1 + num_cells[1])]
|
54
|
+
TESTS.append(
|
55
|
+
[
|
56
|
+
dict(num_cells=num_cells, distort_steps=distort_steps, mode="bilinear", padding_mode="reflection"),
|
57
|
+
p(np.indices([6, 6]).astype(np.float32)),
|
58
|
+
p(
|
59
|
+
np.array(
|
60
|
+
[
|
61
|
+
[
|
62
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
63
|
+
[2.25, 2.25, 2.25, 2.25, 2.25, 2.25],
|
64
|
+
[4.5, 4.5, 4.5, 4.5, 4.5, 4.5],
|
65
|
+
[4.5, 4.5, 4.5, 4.5, 4.5, 4.5],
|
66
|
+
[4.2500, 4.2500, 4.2500, 4.2500, 4.2500, 4.2500],
|
67
|
+
[2.0, 2.0, 2.0, 2.0, 2.0, 2.0],
|
68
|
+
],
|
69
|
+
[
|
70
|
+
[0.0, 1.5, 3.0, 3.0, 4.5, 5.0],
|
71
|
+
[0.0, 1.5, 3.0, 3.0, 4.5, 5.0],
|
72
|
+
[0.0, 1.5, 3.0, 3.0, 4.5, 5.0],
|
73
|
+
[0.0, 1.5, 3.0, 3.0, 4.5, 5.0],
|
74
|
+
[0.0, 1.5, 3.0, 3.0, 4.5, 5.0],
|
75
|
+
[0.0, 1.5, 3.0, 3.0, 4.5, 5.0],
|
76
|
+
],
|
77
|
+
]
|
78
|
+
).astype(np.float32)
|
79
|
+
),
|
80
|
+
]
|
81
|
+
)
|
82
|
+
TESTS.append(
|
83
|
+
[
|
84
|
+
dict(num_cells=2, distort_steps=[(1.26,) * 3] * 3, mode="nearest", padding_mode="zeros"),
|
85
|
+
p(np.indices([3, 3, 3])[:1].astype(np.float32)),
|
86
|
+
p(
|
87
|
+
np.array(
|
88
|
+
[
|
89
|
+
[
|
90
|
+
[[0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0]],
|
91
|
+
[[1.0, 1.0, 0.0], [1.0, 1.0, 0.0], [0.0, 0.0, 0.0]],
|
92
|
+
[[0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0]],
|
93
|
+
]
|
94
|
+
]
|
95
|
+
).astype(np.float32)
|
96
|
+
),
|
97
|
+
]
|
98
|
+
)
|
99
|
+
|
100
|
+
|
101
|
+
class TestGridDistortion(unittest.TestCase):
|
102
|
+
@parameterized.expand(TESTS)
|
103
|
+
def test_grid_distortion(self, input_param, input_data, expected_val):
|
104
|
+
g = GridDistortion(**input_param)
|
105
|
+
result = g(input_data)
|
106
|
+
if input_param["padding_mode"] != "reflection":
|
107
|
+
assert_allclose(result, expected_val, type_test=False, rtol=1e-4, atol=1e-4)
|
108
|
+
else:
|
109
|
+
assert_allclose(result.shape, expected_val.shape, type_test=False, rtol=1e-4, atol=1e-4)
|
110
|
+
|
111
|
+
|
112
|
+
if __name__ == "__main__":
|
113
|
+
unittest.main()
|
@@ -0,0 +1,87 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.transforms import GridDistortiond
|
20
|
+
from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose
|
21
|
+
|
22
|
+
TESTS = []
|
23
|
+
num_cells = (2, 2)
|
24
|
+
distort_steps = [(1.5,) * (1 + n_c) for n_c in num_cells]
|
25
|
+
for p in TEST_NDARRAYS_ALL:
|
26
|
+
img = np.indices([6, 6]).astype(np.float32)
|
27
|
+
TESTS.append(
|
28
|
+
[
|
29
|
+
dict(
|
30
|
+
keys=["img", "mask"],
|
31
|
+
num_cells=num_cells,
|
32
|
+
distort_steps=distort_steps,
|
33
|
+
mode=["bilinear", "nearest"],
|
34
|
+
padding_mode=["reflection", "zeros"],
|
35
|
+
),
|
36
|
+
{"img": p(img), "mask": p(np.ones_like(img[:1]))},
|
37
|
+
p(
|
38
|
+
np.array(
|
39
|
+
[
|
40
|
+
[
|
41
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
42
|
+
[2.25, 2.25, 2.25, 2.25, 2.25, 2.25],
|
43
|
+
[4.5, 4.5, 4.5, 4.5, 4.5, 4.5],
|
44
|
+
[4.5, 4.5, 4.5, 4.5, 4.5, 4.5],
|
45
|
+
[4.2500, 4.2500, 4.2500, 4.2500, 4.2500, 4.2500],
|
46
|
+
[2.0000, 2.0000, 2.0000, 2.0000, 2.0000, 2.0000],
|
47
|
+
],
|
48
|
+
[
|
49
|
+
[0.0000, 2.2500, 4.5000, 4.5000, 4.2500, 2.0000],
|
50
|
+
[0.0000, 2.2500, 4.5000, 4.5000, 4.2500, 2.0000],
|
51
|
+
[0.0000, 2.2500, 4.5000, 4.5000, 4.2500, 2.0000],
|
52
|
+
[0.0000, 2.2500, 4.5000, 4.5000, 4.2500, 2.0000],
|
53
|
+
[0.0000, 2.2500, 4.5000, 4.5000, 4.2500, 2.0000],
|
54
|
+
[0.0000, 2.2500, 4.5000, 4.5000, 4.2500, 2.0000],
|
55
|
+
],
|
56
|
+
]
|
57
|
+
).astype(np.float32)
|
58
|
+
),
|
59
|
+
p(
|
60
|
+
np.array(
|
61
|
+
[
|
62
|
+
[
|
63
|
+
[1.0, 1.0, 1.0, 1.0, 0.0, 0.0],
|
64
|
+
[1.0, 1.0, 1.0, 1.0, 0.0, 0.0],
|
65
|
+
[1.0, 1.0, 1.0, 1.0, 0.0, 0.0],
|
66
|
+
[1.0, 1.0, 1.0, 1.0, 0.0, 0.0],
|
67
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
68
|
+
[0.0, 0.0, 0.0, 0.0, 0.0, 0.0],
|
69
|
+
]
|
70
|
+
]
|
71
|
+
).astype(np.float32)
|
72
|
+
),
|
73
|
+
]
|
74
|
+
)
|
75
|
+
|
76
|
+
|
77
|
+
class TestGridDistortiond(unittest.TestCase):
|
78
|
+
@parameterized.expand(TESTS)
|
79
|
+
def test_grid_distortiond(self, input_param, input_data, expected_val_img, expected_val_mask):
|
80
|
+
g = GridDistortiond(**input_param)
|
81
|
+
result = g(input_data)
|
82
|
+
assert_allclose(result["mask"], expected_val_mask, type_test=False, rtol=1e-4, atol=1e-4)
|
83
|
+
assert_allclose(result["img"].shape, expected_val_img.shape, type_test=False, rtol=1e-4, atol=1e-4)
|
84
|
+
|
85
|
+
|
86
|
+
if __name__ == "__main__":
|
87
|
+
unittest.main()
|