monai-weekly 1.5.dev2505__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/meta_tensor.py +5 -0
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/jupyter_utils.py +1 -1
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- monai/visualize/img2tensorboard.py +2 -2
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
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- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2505.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import itertools
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import unittest
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.data.utils import list_data_collate
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from monai.inferers import SlidingWindowInferer, SlidingWindowInfererAdapt, sliding_window_inference
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from monai.utils import optional_import
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from tests.test_utils import TEST_TORCH_AND_META_TENSORS, skip_if_no_cuda, test_is_quick
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_, has_tqdm = optional_import("tqdm")
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TEST_CASES = [
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[(2, 3, 16), (4,), 3, 0.25, "constant", torch.device("cpu:0")], # 1D small roi
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[(2, 3, 16, 15, 7, 9), 4, 3, 0.25, "constant", torch.device("cpu:0")], # 4D small roi
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[(1, 3, 16, 15, 7), (4, -1, 7), 3, 0.25, "constant", torch.device("cpu:0")], # 3D small roi
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[(2, 3, 16, 15, 7), (4, -1, 7), 3, 0.25, "constant", torch.device("cpu:0")], # 3D small roi
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[(3, 3, 16, 15, 7), (4, -1, 7), 3, 0.25, "constant", torch.device("cpu:0")], # 3D small roi
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[(2, 3, 16, 15, 7), (4, -1, 7), 3, 0.25, "constant", torch.device("cpu:0")], # 3D small roi
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[(1, 3, 16, 15, 7), (4, 10, 7), 3, 0.25, "constant", torch.device("cpu:0")], # 3D small roi
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[(1, 3, 16, 15, 7), (20, 22, 23), 10, 0.25, "constant", torch.device("cpu:0")], # 3D large roi
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[(2, 3, 15, 7), (2, 6), 1000, 0.25, "constant", torch.device("cpu:0")], # 2D small roi, large batch
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[(1, 3, 16, 7), (80, 50), 7, 0.25, "constant", torch.device("cpu:0")], # 2D large roi
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[(1, 3, 16, 15, 7), (20, 22, 23), 10, 0.5, "constant", torch.device("cpu:0")], # 3D large overlap
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[(1, 3, 16, 7), (80, 50), 7, 0.5, "gaussian", torch.device("cpu:0")], # 2D large overlap, gaussian
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[(1, 3, 16, 15, 7), (4, 10, 7), 3, 0.25, "gaussian", torch.device("cpu:0")], # 3D small roi, gaussian
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[(3, 3, 16, 15, 7), (4, 10, 7), 3, 0.25, "gaussian", torch.device("cpu:0")], # 3D small roi, gaussian
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[(1, 3, 16, 15, 7), (4, 10, 7), 3, 0.25, "gaussian", torch.device("cuda:0")], # test inference on gpu if availabe
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[(1, 3, 16, 15, 7), (4, 1, 7), 3, 0.25, "constant", torch.device("cpu:0")], # 3D small roi
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[(5, 3, 16, 15, 7), (4, 1, 7), 3, 0.25, "constant", torch.device("cpu:0")], # 3D small roi
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]
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_devices = [["cpu", "cuda:0"]] if torch.cuda.is_available() else [["cpu"]]
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_windows = [
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[(2, 3, 10, 11), (7, 10), 0.8, 5],
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[(2, 3, 10, 11), (15, 12), 0, 2],
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[(2, 3, 10, 11), (10, 11), 0, 3],
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[(2, 3, 511, 237), (96, 80), 0.4, 5],
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[(2, 3, 512, 245), (96, 80), 0, 5],
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[(2, 3, 512, 245), (512, 80), 0.125, 5],
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[(2, 3, 10, 11, 12), (7, 8, 10), 0.2, 2],
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]
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if not test_is_quick():
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_windows += [
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[(2, 1, 125, 512, 200), (96, 97, 98), (0.4, 0.32, 0), 20],
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[(2, 1, 10, 512, 200), (96, 97, 98), (0.4, 0.12, 0), 21],
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[(2, 3, 100, 100, 200), (50, 50, 100), 0, 8],
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]
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BUFFER_CASES: list = []
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for x in _windows:
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for s in (1, 3, 4):
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for d in (-1, 0, 1):
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BUFFER_CASES.extend([x, s, d, dev] for dev in itertools.product(*_devices * 3))
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class TestSlidingWindowInference(unittest.TestCase):
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@parameterized.expand(BUFFER_CASES)
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def test_buffers(self, size_params, buffer_steps, buffer_dim, device_params):
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def mult_two(patch, *args, **kwargs):
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return 2.0 * patch
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img_size, roi_size, overlap, sw_batch_size = size_params
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img_device, device, sw_device = device_params
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dtype = [torch.float, torch.double][roi_size[0] % 2] # test different input dtype
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mode = ["constant", "gaussian"][img_size[1] % 2]
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image = torch.randint(0, 255, size=img_size, dtype=dtype, device=img_device)
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sw = sliding_window_inference(
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image,
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roi_size,
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sw_batch_size,
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mult_two,
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overlap,
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mode=mode,
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sw_device=sw_device,
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device=device,
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buffer_steps=buffer_steps,
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buffer_dim=buffer_dim,
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)
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max_diff = torch.max(torch.abs(image.to(sw) - 0.5 * sw)).item()
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self.assertGreater(0.001, max_diff)
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@parameterized.expand(TEST_CASES)
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def test_sliding_window_default(self, image_shape, roi_shape, sw_batch_size, overlap, mode, device):
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n_total = np.prod(image_shape)
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if mode == "constant":
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inputs = torch.arange(n_total, dtype=torch.float).reshape(*image_shape)
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else:
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inputs = torch.ones(*image_shape, dtype=torch.float)
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if device.type == "cuda" and not torch.cuda.is_available():
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device = torch.device("cpu:0")
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def compute(data):
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return data + 1
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if mode == "constant":
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expected_val = np.arange(n_total, dtype=np.float32).reshape(*image_shape) + 1.0
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else:
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expected_val = np.ones(image_shape, dtype=np.float32) + 1.0
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result = sliding_window_inference(inputs.to(device), roi_shape, sw_batch_size, compute, overlap, mode=mode)
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np.testing.assert_string_equal(device.type, result.device.type)
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np.testing.assert_allclose(result.cpu().numpy(), expected_val)
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result = SlidingWindowInferer(roi_shape, sw_batch_size, overlap, mode)(inputs.to(device), compute)
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np.testing.assert_string_equal(device.type, result.device.type)
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np.testing.assert_allclose(result.cpu().numpy(), expected_val)
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@parameterized.expand([[x] for x in TEST_TORCH_AND_META_TENSORS])
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def test_default_device(self, data_type):
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device = "cuda" if torch.cuda.is_available() else "cpu:0"
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inputs = data_type(torch.ones((3, 16, 15, 7))).to(device=device)
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inputs = list_data_collate([inputs]) # make a proper batch
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roi_shape = (4, 10, 7)
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sw_batch_size = 10
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def compute(data):
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return data + 1
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inputs.requires_grad = True
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result = sliding_window_inference(inputs, roi_shape, sw_batch_size, compute)
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self.assertTrue(result.requires_grad)
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np.testing.assert_string_equal(inputs.device.type, result.device.type)
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expected_val = np.ones((1, 3, 16, 15, 7), dtype=np.float32) + 1
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np.testing.assert_allclose(result.detach().cpu().numpy(), expected_val)
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@parameterized.expand(list(itertools.product(TEST_TORCH_AND_META_TENSORS, ("cpu", "cuda"), ("cpu", "cuda", None))))
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@skip_if_no_cuda
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def test_sw_device(self, data_type, device, sw_device):
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inputs = data_type(torch.ones((3, 16, 15, 7))).to(device=device)
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inputs = list_data_collate([inputs]) # make a proper batch
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roi_shape = (4, 10, 7)
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sw_batch_size = 10
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def compute(data):
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self.assertEqual(data.device.type, sw_device or device)
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return data + torch.tensor(1, device=sw_device or device)
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result = sliding_window_inference(inputs, roi_shape, sw_batch_size, compute, sw_device=sw_device, device="cpu")
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np.testing.assert_string_equal("cpu", result.device.type)
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expected_val = np.ones((1, 3, 16, 15, 7), dtype=np.float32) + 1
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np.testing.assert_allclose(result.cpu().numpy(), expected_val)
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def test_sigma(self):
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device = "cuda" if torch.cuda.is_available() else "cpu:0"
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inputs = torch.ones((1, 1, 7, 7)).to(device=device)
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roi_shape = (3, 3)
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sw_batch_size = 10
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class _Pred:
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add = 1
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def compute(self, data):
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self.add += 1
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return data + self.add
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result = sliding_window_inference(
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inputs,
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roi_shape,
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sw_batch_size,
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_Pred().compute,
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overlap=0.5,
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padding_mode="constant",
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cval=-1,
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mode="constant",
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sigma_scale=1.0,
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)
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expected = np.array(
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[
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[
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[
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[3.0000, 3.0000, 3.0000, 3.0000, 3.0000, 3.0000, 3.0000],
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[3.0000, 3.0000, 3.0000, 3.0000, 3.0000, 3.0000, 3.0000],
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[3.3333, 3.3333, 3.3333, 3.3333, 3.3333, 3.3333, 3.3333],
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[3.6667, 3.6667, 3.6667, 3.6667, 3.6667, 3.6667, 3.6667],
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[4.3333, 4.3333, 4.3333, 4.3333, 4.3333, 4.3333, 4.3333],
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[4.5000, 4.5000, 4.5000, 4.5000, 4.5000, 4.5000, 4.5000],
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[5.0000, 5.0000, 5.0000, 5.0000, 5.0000, 5.0000, 5.0000],
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]
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]
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]
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)
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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result = sliding_window_inference(
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inputs,
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roi_shape,
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sw_batch_size,
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_Pred().compute,
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overlap=0.5,
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padding_mode="constant",
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cval=-1,
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mode="gaussian",
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sigma_scale=1.0,
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progress=has_tqdm,
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)
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expected = np.array(
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[
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[
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[
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[3.0, 3.0, 3.0, 3.0, 3.0, 3.0, 3.0],
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[3.0, 3.0, 3.0, 3.0, 3.0, 3.0, 3.0],
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[3.3271625, 3.3271623, 3.3271623, 3.3271623, 3.3271623, 3.3271623, 3.3271625],
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[3.6728377, 3.6728377, 3.6728377, 3.6728377, 3.6728377, 3.6728377, 3.6728377],
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[4.3271623, 4.3271623, 4.3271627, 4.3271627, 4.3271627, 4.3271623, 4.3271623],
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[4.513757, 4.513757, 4.513757, 4.513757, 4.513757, 4.513757, 4.513757],
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[4.9999995, 5.0, 5.0, 5.0, 5.0, 5.0, 4.9999995],
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]
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]
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]
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)
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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result = SlidingWindowInferer(roi_shape, sw_batch_size, overlap=0.5, mode="gaussian", sigma_scale=1.0)(
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inputs, _Pred().compute
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)
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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result = SlidingWindowInferer(roi_shape, sw_batch_size, overlap=0.5, mode="gaussian", sigma_scale=[1.0, 1.0])(
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inputs, _Pred().compute
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)
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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result = SlidingWindowInferer(
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roi_shape, sw_batch_size, overlap=0.5, mode="gaussian", sigma_scale=[1.0, 1.0], cache_roi_weight_map=True
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)(inputs, _Pred().compute)
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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def test_cval(self):
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device = "cuda" if torch.cuda.is_available() else "cpu:0"
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inputs = torch.ones((1, 1, 3, 3)).to(device=device)
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roi_shape = (5, 5)
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sw_batch_size = 10
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def compute(data):
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return data + data.sum()
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result = sliding_window_inference(
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inputs,
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roi_shape,
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sw_batch_size,
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compute,
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overlap=0.5,
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padding_mode="constant",
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cval=-1,
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mode="constant",
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sigma_scale=1.0,
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)
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expected = np.ones((1, 1, 3, 3)) * -6.0
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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result = SlidingWindowInferer(roi_shape, sw_batch_size, overlap=0.5, mode="constant", cval=-1)(inputs, compute)
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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def test_args_kwargs(self):
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device = "cuda" if torch.cuda.is_available() else "cpu:0"
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inputs = torch.ones((1, 1, 3, 3)).to(device=device)
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t1 = torch.ones(1).to(device=device)
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t2 = torch.ones(1).to(device=device)
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roi_shape = (5, 5)
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sw_batch_size = 10
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def compute(data, test1, test2):
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return data + test1 + test2
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result = sliding_window_inference(
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inputs,
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roi_shape,
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sw_batch_size,
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compute,
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0.5,
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"constant",
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1.0,
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"constant",
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0.0,
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device,
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device,
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has_tqdm,
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None,
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None,
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None,
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0,
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False,
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t1,
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test2=t2,
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)
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expected = np.ones((1, 1, 3, 3)) + 2.0
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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+
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result = SlidingWindowInferer(
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roi_shape, sw_batch_size, overlap=0.5, mode="constant", cval=-1, progress=has_tqdm
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+
)(inputs, compute, t1, test2=t2)
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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+
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result = SlidingWindowInfererAdapt(
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roi_shape, sw_batch_size, overlap=0.5, mode="constant", cval=-1, progress=has_tqdm
|
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+
)(inputs, compute, t1, test2=t2)
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np.testing.assert_allclose(result.cpu().numpy(), expected, rtol=1e-4)
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+
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def test_multioutput(self):
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device = "cuda" if torch.cuda.is_available() else "cpu:0"
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inputs = torch.ones((1, 6, 20, 20)).to(device=device)
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roi_shape = (8, 8)
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sw_batch_size = 10
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def compute(data):
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return data + 1, data[:, ::3, ::2, ::2] + 2, data[:, ::2, ::4, ::4] + 3
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+
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def compute_dict(data):
|
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return {1: data + 1, 2: data[:, ::3, ::2, ::2] + 2, 3: data[:, ::2, ::4, ::4] + 3}
|
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+
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result = sliding_window_inference(
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inputs,
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roi_shape,
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sw_batch_size,
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compute,
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0.5,
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"constant",
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1.0,
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"constant",
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0.0,
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device,
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device,
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has_tqdm,
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None,
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)
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result_dict = sliding_window_inference(
|
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inputs,
|
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roi_shape,
|
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sw_batch_size,
|
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compute_dict,
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0.5,
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"constant",
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1.0,
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"constant",
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0.0,
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device,
|
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device,
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has_tqdm,
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None,
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)
|
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expected = (np.ones((1, 6, 20, 20)) + 1, np.ones((1, 2, 10, 10)) + 2, np.ones((1, 3, 5, 5)) + 3)
|
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expected_dict = {1: np.ones((1, 6, 20, 20)) + 1, 2: np.ones((1, 2, 10, 10)) + 2, 3: np.ones((1, 3, 5, 5)) + 3}
|
358
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+
for rr, ee in zip(result, expected):
|
359
|
+
np.testing.assert_allclose(rr.cpu().numpy(), ee, rtol=1e-4)
|
360
|
+
for rr, _ in zip(result_dict, expected_dict):
|
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np.testing.assert_allclose(result_dict[rr].cpu().numpy(), expected_dict[rr], rtol=1e-4)
|
362
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+
|
363
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+
result = SlidingWindowInferer(
|
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roi_shape, sw_batch_size, overlap=0.5, mode="constant", cval=-1, progress=has_tqdm
|
365
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+
)(inputs, compute)
|
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for rr, ee in zip(result, expected):
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np.testing.assert_allclose(rr.cpu().numpy(), ee, rtol=1e-4)
|
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+
|
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result_dict = SlidingWindowInferer(
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+
roi_shape, sw_batch_size, overlap=0.5, mode="constant", cval=-1, progress=has_tqdm
|
371
|
+
)(inputs, compute_dict)
|
372
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+
for rr, _ in zip(result_dict, expected_dict):
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np.testing.assert_allclose(result_dict[rr].cpu().numpy(), expected_dict[rr], rtol=1e-4)
|
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+
|
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+
|
376
|
+
if __name__ == "__main__":
|
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+
unittest.main()
|
@@ -0,0 +1,284 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
from torch.nn.functional import pad
|
19
|
+
|
20
|
+
from monai.inferers import SlidingWindowSplitter
|
21
|
+
from tests.test_utils import assert_allclose
|
22
|
+
|
23
|
+
# ----------------------------------------------------------------------------
|
24
|
+
# Tensor test cases
|
25
|
+
# ----------------------------------------------------------------------------
|
26
|
+
# random int tensor (0, 255)
|
27
|
+
TENSOR_4x4 = torch.randint(low=0, high=255, size=(2, 3, 4, 4), dtype=torch.float32)
|
28
|
+
|
29
|
+
# random int tensor (0, 255) with artifacts at [..., :2, 2:]
|
30
|
+
TENSOR_4x4_artifact = TENSOR_4x4.clone()
|
31
|
+
TENSOR_4x4_artifact[..., :2, 2:] = 512.0
|
32
|
+
|
33
|
+
# no-overlapping 2x2
|
34
|
+
TEST_CASE_TENSOR_0 = [
|
35
|
+
TENSOR_4x4,
|
36
|
+
{"patch_size": (2, 2), "overlap": 0.0},
|
37
|
+
[
|
38
|
+
(TENSOR_4x4[..., :2, :2], (0, 0)),
|
39
|
+
(TENSOR_4x4[..., :2, 2:], (0, 2)),
|
40
|
+
(TENSOR_4x4[..., 2:, :2], (2, 0)),
|
41
|
+
(TENSOR_4x4[..., 2:, 2:], (2, 2)),
|
42
|
+
],
|
43
|
+
]
|
44
|
+
|
45
|
+
# no-overlapping 3x3 with pad
|
46
|
+
TEST_CASE_TENSOR_1 = [
|
47
|
+
TENSOR_4x4,
|
48
|
+
{"patch_size": (3, 3), "overlap": 0.0, "pad_mode": "constant"},
|
49
|
+
[
|
50
|
+
(TENSOR_4x4[..., :3, :3], (0, 0)),
|
51
|
+
(pad(TENSOR_4x4[..., :3, 3:], (0, 2)), (0, 3)),
|
52
|
+
(pad(TENSOR_4x4[..., 3:, :3], (0, 0, 0, 2)), (3, 0)),
|
53
|
+
(pad(TENSOR_4x4[..., 3:, 3:], (0, 2, 0, 2)), (3, 3)),
|
54
|
+
],
|
55
|
+
]
|
56
|
+
|
57
|
+
# overlapping 2x2 with fraction
|
58
|
+
TEST_CASE_TENSOR_2 = [
|
59
|
+
TENSOR_4x4,
|
60
|
+
{"patch_size": (2, 2), "overlap": (0.5, 0.5)},
|
61
|
+
[
|
62
|
+
(TENSOR_4x4[..., 0:2, 0:2], (0, 0)),
|
63
|
+
(TENSOR_4x4[..., 0:2, 1:3], (0, 1)),
|
64
|
+
(TENSOR_4x4[..., 0:2, 2:4], (0, 2)),
|
65
|
+
(TENSOR_4x4[..., 1:3, 0:2], (1, 0)),
|
66
|
+
(TENSOR_4x4[..., 1:3, 1:3], (1, 1)),
|
67
|
+
(TENSOR_4x4[..., 1:3, 2:4], (1, 2)),
|
68
|
+
(TENSOR_4x4[..., 2:4, 0:2], (2, 0)),
|
69
|
+
(TENSOR_4x4[..., 2:4, 1:3], (2, 1)),
|
70
|
+
(TENSOR_4x4[..., 2:4, 2:4], (2, 2)),
|
71
|
+
],
|
72
|
+
]
|
73
|
+
|
74
|
+
# overlapping 3x3 with fraction (non-divisible)
|
75
|
+
TEST_CASE_TENSOR_3 = [
|
76
|
+
TENSOR_4x4,
|
77
|
+
{"patch_size": (3, 3), "overlap": 2.0 / 3.0},
|
78
|
+
[
|
79
|
+
(TENSOR_4x4[..., :3, :3], (0, 0)),
|
80
|
+
(TENSOR_4x4[..., :3, 1:], (0, 1)),
|
81
|
+
(TENSOR_4x4[..., 1:, :3], (1, 0)),
|
82
|
+
(TENSOR_4x4[..., 1:, 1:], (1, 1)),
|
83
|
+
],
|
84
|
+
]
|
85
|
+
|
86
|
+
# overlapping 2x2 with number of pixels
|
87
|
+
TEST_CASE_TENSOR_4 = [
|
88
|
+
TENSOR_4x4,
|
89
|
+
{"patch_size": (2, 2), "overlap": (1, 1)},
|
90
|
+
[
|
91
|
+
(TENSOR_4x4[..., 0:2, 0:2], (0, 0)),
|
92
|
+
(TENSOR_4x4[..., 0:2, 1:3], (0, 1)),
|
93
|
+
(TENSOR_4x4[..., 0:2, 2:4], (0, 2)),
|
94
|
+
(TENSOR_4x4[..., 1:3, 0:2], (1, 0)),
|
95
|
+
(TENSOR_4x4[..., 1:3, 1:3], (1, 1)),
|
96
|
+
(TENSOR_4x4[..., 1:3, 2:4], (1, 2)),
|
97
|
+
(TENSOR_4x4[..., 2:4, 0:2], (2, 0)),
|
98
|
+
(TENSOR_4x4[..., 2:4, 1:3], (2, 1)),
|
99
|
+
(TENSOR_4x4[..., 2:4, 2:4], (2, 2)),
|
100
|
+
],
|
101
|
+
]
|
102
|
+
|
103
|
+
# overlapping 3x3 with number of pixels (non-divisible)
|
104
|
+
TEST_CASE_TENSOR_5 = [
|
105
|
+
TENSOR_4x4,
|
106
|
+
{"patch_size": (3, 3), "overlap": 2},
|
107
|
+
[
|
108
|
+
(TENSOR_4x4[..., :3, :3], (0, 0)),
|
109
|
+
(TENSOR_4x4[..., :3, 1:], (0, 1)),
|
110
|
+
(TENSOR_4x4[..., 1:, :3], (1, 0)),
|
111
|
+
(TENSOR_4x4[..., 1:, 1:], (1, 1)),
|
112
|
+
],
|
113
|
+
]
|
114
|
+
# non-overlapping 2x2 with positive offset
|
115
|
+
TEST_CASE_TENSOR_6 = [
|
116
|
+
TENSOR_4x4,
|
117
|
+
{"patch_size": (2, 2), "offset": 1},
|
118
|
+
[
|
119
|
+
(TENSOR_4x4[..., 1:3, 1:3], (1, 1)),
|
120
|
+
(pad(TENSOR_4x4[..., 1:3, 3:], (0, 1)), (1, 3)),
|
121
|
+
(pad(TENSOR_4x4[..., 3:, 1:3], (0, 0, 0, 1)), (3, 1)),
|
122
|
+
(pad(TENSOR_4x4[..., 3:, 3:], (0, 1, 0, 1)), (3, 3)),
|
123
|
+
],
|
124
|
+
]
|
125
|
+
|
126
|
+
# non-overlapping 2x2 with negative offset
|
127
|
+
TEST_CASE_TENSOR_7 = [
|
128
|
+
TENSOR_4x4,
|
129
|
+
{"patch_size": (2, 2), "offset": -1},
|
130
|
+
[
|
131
|
+
(pad(TENSOR_4x4[..., :1, :1], (1, 0, 1, 0)), (-1, -1)),
|
132
|
+
(pad(TENSOR_4x4[..., :1, 1:3], (0, 0, 1, 0)), (-1, 1)),
|
133
|
+
(pad(TENSOR_4x4[..., :1, 3:], (0, 1, 1, 0)), (-1, 3)),
|
134
|
+
(pad(TENSOR_4x4[..., 1:3, :1], (1, 0)), (1, -1)),
|
135
|
+
(TENSOR_4x4[..., 1:3, 1:3], (1, 1)),
|
136
|
+
(pad(TENSOR_4x4[..., 1:3, 3:], (0, 1)), (1, 3)),
|
137
|
+
(pad(TENSOR_4x4[..., 3:, :1], (1, 0, 0, 1)), (3, -1)),
|
138
|
+
(pad(TENSOR_4x4[..., 3:, 1:3], (0, 0, 0, 1)), (3, 1)),
|
139
|
+
(pad(TENSOR_4x4[..., 3:, 3:], (0, 1, 0, 1)), (3, 3)),
|
140
|
+
],
|
141
|
+
]
|
142
|
+
|
143
|
+
# non-overlapping 2x2 with positive offset and no padding
|
144
|
+
TEST_CASE_TENSOR_8 = [
|
145
|
+
TENSOR_4x4,
|
146
|
+
{"patch_size": (2, 2), "offset": 1, "pad_mode": None},
|
147
|
+
[(TENSOR_4x4[..., 1:3, 1:3], (1, 1))],
|
148
|
+
]
|
149
|
+
|
150
|
+
|
151
|
+
# ----------------------------------------------------------------------------
|
152
|
+
# Filtering function test cases
|
153
|
+
# ----------------------------------------------------------------------------
|
154
|
+
def gen_filter(filter_type, value=None):
|
155
|
+
""" "Generate patch filtering function for testing"""
|
156
|
+
if filter_type.lower() == "high":
|
157
|
+
|
158
|
+
def my_filter(patch, location):
|
159
|
+
if torch.any(patch > value):
|
160
|
+
return True
|
161
|
+
return False
|
162
|
+
|
163
|
+
elif filter_type.lower() == "low":
|
164
|
+
|
165
|
+
def my_filter(patch, location):
|
166
|
+
if torch.any(patch < value):
|
167
|
+
return True
|
168
|
+
return False
|
169
|
+
|
170
|
+
elif filter_type.lower() == "location":
|
171
|
+
|
172
|
+
def my_filter(patch, location):
|
173
|
+
if location in value:
|
174
|
+
return True
|
175
|
+
return False
|
176
|
+
|
177
|
+
return my_filter
|
178
|
+
|
179
|
+
|
180
|
+
TEST_CASE_FILTER_FN_0 = [
|
181
|
+
TENSOR_4x4_artifact,
|
182
|
+
{"patch_size": (2, 2), "filter_fn": gen_filter("low", 256)},
|
183
|
+
[
|
184
|
+
(TENSOR_4x4_artifact[..., :2, :2], (0, 0)),
|
185
|
+
(TENSOR_4x4_artifact[..., 2:, :2], (2, 0)),
|
186
|
+
(TENSOR_4x4_artifact[..., 2:, 2:], (2, 2)),
|
187
|
+
],
|
188
|
+
]
|
189
|
+
|
190
|
+
TEST_CASE_FILTER_FN_1 = [
|
191
|
+
TENSOR_4x4_artifact,
|
192
|
+
{"patch_size": (2, 2), "filter_fn": gen_filter("high", 256)},
|
193
|
+
[(TENSOR_4x4_artifact[..., :2, 2:], (0, 2))],
|
194
|
+
]
|
195
|
+
|
196
|
+
TEST_CASE_FILTER_FN_2 = [
|
197
|
+
TENSOR_4x4_artifact,
|
198
|
+
{"patch_size": (2, 2), "filter_fn": gen_filter("location", [(2, 2), (2, 0)])},
|
199
|
+
[(TENSOR_4x4_artifact[..., 2:, :2], (2, 0)), (TENSOR_4x4_artifact[..., 2:, 2:], (2, 2))],
|
200
|
+
]
|
201
|
+
|
202
|
+
|
203
|
+
# ----------------------------------------------------------------------------
|
204
|
+
# Error test cases
|
205
|
+
# ----------------------------------------------------------------------------
|
206
|
+
def extra_parameter_filter(patch, location, extra):
|
207
|
+
return
|
208
|
+
|
209
|
+
|
210
|
+
def missing_parameter_filter(patch):
|
211
|
+
return
|
212
|
+
|
213
|
+
|
214
|
+
# invalid overlap: float 1.0
|
215
|
+
TEST_CASE_ERROR_0 = [TENSOR_4x4, {"patch_size": (2, 2), "overlap": 1.0}, ValueError]
|
216
|
+
# invalid overlap: negative float
|
217
|
+
TEST_CASE_ERROR_1 = [TENSOR_4x4, {"patch_size": (2, 2), "overlap": -0.1}, ValueError]
|
218
|
+
# invalid overlap: negative integer
|
219
|
+
TEST_CASE_ERROR_2 = [TENSOR_4x4, {"patch_size": (2, 2), "overlap": -1}, ValueError]
|
220
|
+
# invalid overlap: integer larger than patch size
|
221
|
+
TEST_CASE_ERROR_3 = [TENSOR_4x4, {"patch_size": (2, 2), "overlap": 3}, ValueError]
|
222
|
+
|
223
|
+
# invalid offset: positive and larger than image size
|
224
|
+
TEST_CASE_ERROR_4 = [TENSOR_4x4, {"patch_size": (2, 2), "offset": 4}, ValueError]
|
225
|
+
# invalid offset: negative and larger than patch size (in magnitude)
|
226
|
+
TEST_CASE_ERROR_5 = [TENSOR_4x4, {"patch_size": (2, 2), "offset": -3, "pad_mode": "constant"}, ValueError]
|
227
|
+
# invalid offset: negative and no padding
|
228
|
+
TEST_CASE_ERROR_6 = [TENSOR_4x4, {"patch_size": (2, 2), "offset": -1, "pad_mode": None}, ValueError]
|
229
|
+
|
230
|
+
# invalid filter function: with more than two positional parameters
|
231
|
+
TEST_CASE_ERROR_7 = [TENSOR_4x4, {"patch_size": (2, 2), "filter_fn": extra_parameter_filter}, ValueError]
|
232
|
+
# invalid filter function: with less than two positional parameters
|
233
|
+
TEST_CASE_ERROR_8 = [TENSOR_4x4, {"patch_size": (2, 2), "filter_fn": missing_parameter_filter}, ValueError]
|
234
|
+
# invalid filter function: non-callable
|
235
|
+
TEST_CASE_ERROR_9 = [TENSOR_4x4, {"patch_size": (2, 2), "filter_fn": 1}, ValueError]
|
236
|
+
|
237
|
+
|
238
|
+
class SlidingWindowSplitterTests(unittest.TestCase):
|
239
|
+
@parameterized.expand(
|
240
|
+
[
|
241
|
+
TEST_CASE_TENSOR_0,
|
242
|
+
TEST_CASE_TENSOR_1,
|
243
|
+
TEST_CASE_TENSOR_2,
|
244
|
+
TEST_CASE_TENSOR_3,
|
245
|
+
TEST_CASE_TENSOR_4,
|
246
|
+
TEST_CASE_TENSOR_5,
|
247
|
+
TEST_CASE_TENSOR_6,
|
248
|
+
TEST_CASE_TENSOR_7,
|
249
|
+
TEST_CASE_TENSOR_8,
|
250
|
+
TEST_CASE_FILTER_FN_0,
|
251
|
+
TEST_CASE_FILTER_FN_1,
|
252
|
+
TEST_CASE_FILTER_FN_2,
|
253
|
+
]
|
254
|
+
)
|
255
|
+
def test_split_patches_tensor(self, image, arguments, expected):
|
256
|
+
patches = SlidingWindowSplitter(**arguments)(image)
|
257
|
+
patches = list(patches)
|
258
|
+
self.assertEqual(len(patches), len(expected))
|
259
|
+
for p, e in zip(patches, expected):
|
260
|
+
assert_allclose(p[0], e[0])
|
261
|
+
self.assertTupleEqual(p[1], e[1])
|
262
|
+
|
263
|
+
@parameterized.expand(
|
264
|
+
[
|
265
|
+
TEST_CASE_ERROR_0,
|
266
|
+
TEST_CASE_ERROR_1,
|
267
|
+
TEST_CASE_ERROR_2,
|
268
|
+
TEST_CASE_ERROR_3,
|
269
|
+
TEST_CASE_ERROR_4,
|
270
|
+
TEST_CASE_ERROR_5,
|
271
|
+
TEST_CASE_ERROR_6,
|
272
|
+
TEST_CASE_ERROR_7,
|
273
|
+
TEST_CASE_ERROR_8,
|
274
|
+
TEST_CASE_ERROR_9,
|
275
|
+
]
|
276
|
+
)
|
277
|
+
def test_split_patches_errors(self, image, arguments, expected_error):
|
278
|
+
with self.assertRaises(expected_error):
|
279
|
+
patches = SlidingWindowSplitter(**arguments)(image)
|
280
|
+
patches = list(patches)
|
281
|
+
|
282
|
+
|
283
|
+
if __name__ == "__main__":
|
284
|
+
unittest.main()
|