monai-weekly 1.5.dev2505__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/meta_tensor.py +5 -0
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/jupyter_utils.py +1 -1
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- monai/visualize/img2tensorboard.py +2 -2
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
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- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2505.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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import numpy as np
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from parameterized import parameterized
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from monai.data.meta_tensor import MetaTensor
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from monai.transforms import RandCropByPosNegLabel
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from monai.transforms.lazy.functional import apply_pending
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from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose
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TESTS = [
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[
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{
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"label": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"spatial_size": [2, 2, -1],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"image_threshold": 0,
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},
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{"img": np.random.randint(0, 2, size=[3, 3, 3, 3])},
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(3, 2, 2, 3),
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],
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[
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{
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"label": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"spatial_size": [2, 2, 2],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"image_threshold": 0,
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},
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{"img": np.random.randint(0, 2, size=[3, 3, 3, 3])},
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(3, 2, 2, 2),
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],
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[
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{
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"label": None,
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"spatial_size": [2, 2, 2],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"image_threshold": 0,
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},
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{
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"img": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"label": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"image": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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},
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(3, 2, 2, 2),
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],
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[
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{
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"label": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"spatial_size": [4, 4, 2],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"allow_smaller": True,
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},
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{"img": np.random.randint(0, 2, size=[3, 3, 3, 3])},
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(3, 3, 3, 2),
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],
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[
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{
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"label": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"spatial_size": [4, 4, 4],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"allow_smaller": True,
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},
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{"img": np.random.randint(0, 2, size=[3, 3, 3, 3])},
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(3, 3, 3, 3),
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],
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]
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class TestRandCropByPosNegLabel(unittest.TestCase):
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@staticmethod
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def convert_data_type(im_type, d, keys=("img", "image", "label")):
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out = deepcopy(d)
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for k, v in out.items():
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if k in keys and isinstance(v, np.ndarray):
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out[k] = im_type(v)
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return out
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@parameterized.expand(TESTS)
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def test_type_shape(self, input_param, input_data, expected_shape):
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results = []
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for p in TEST_NDARRAYS_ALL:
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input_param_mod = self.convert_data_type(p, input_param)
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input_data_mod = self.convert_data_type(p, input_data)
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cropper = RandCropByPosNegLabel(**input_param_mod)
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cropper.set_random_state(0)
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result = cropper(**input_data_mod)
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self.assertListEqual(cropper.spatial_size, input_param["spatial_size"])
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self.assertIsInstance(result, list)
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self.assertTupleEqual(result[0].shape, expected_shape)
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# check for same results across numpy, torch.Tensor and torch.cuda.Tensor
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result = np.asarray([i if isinstance(i, np.ndarray) else i.cpu().numpy() for i in result])
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results.append(np.asarray(result))
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if len(results) > 1:
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np.testing.assert_allclose(results[0], results[-1])
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@parameterized.expand(TESTS)
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def test_pending_ops(self, input_param, input_data, _expected_shape):
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for p in TEST_NDARRAYS_ALL:
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input_param_mod = self.convert_data_type(p, input_param)
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input_data_mod = self.convert_data_type(p, input_data)
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cropper = RandCropByPosNegLabel(**input_param_mod)
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# non-lazy
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cropper.set_random_state(0)
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expected = cropper(**input_data_mod)
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self.assertIsInstance(expected[0], MetaTensor)
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# lazy
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cropper.set_random_state(0)
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cropper.lazy = True
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pending_result = cropper(**input_data_mod)
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for i, _pending_result in enumerate(pending_result):
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self.assertIsInstance(_pending_result, MetaTensor)
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assert_allclose(_pending_result.peek_pending_affine(), expected[i].affine)
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assert_allclose(_pending_result.peek_pending_shape(), expected[i].shape[1:])
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# only support nearest
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result = apply_pending(_pending_result, overrides={"mode": "nearest", "align_corners": False})[0]
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# compare
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assert_allclose(result, expected[i], rtol=1e-5)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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import numpy as np
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from parameterized import parameterized
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from monai.data.meta_tensor import MetaTensor
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from monai.transforms import RandCropByPosNegLabeld
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from monai.transforms.lazy.functional import apply_pending
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from tests.test_utils import TEST_NDARRAYS_ALL, assert_allclose
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TESTS = [
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[
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{
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"keys": ["image", "extra", "label"],
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"label_key": "label",
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"spatial_size": [-1, 2, 2],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image_key": None,
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"image_threshold": 0,
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},
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{
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"image": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"extra": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"label": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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},
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(3, 3, 2, 2),
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],
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[
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{
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"keys": ["image", "extra", "label"],
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"label_key": "label",
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"spatial_size": [2, 2, 2],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image_key": None,
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"image_threshold": 0,
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},
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{
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"image": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"extra": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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"label": np.random.randint(0, 2, size=[3, 3, 3, 3]),
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},
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(3, 2, 2, 2),
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],
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[
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{
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"keys": ["image", "extra", "label"],
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"label_key": "label",
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"spatial_size": [2, 2, 2],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image_key": None,
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"image_threshold": 0,
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},
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{"image": np.zeros([3, 3, 3, 3]) - 1, "extra": np.zeros([3, 3, 3, 3]), "label": np.ones([3, 3, 3, 3])},
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(3, 2, 2, 2),
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],
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[
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{
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"keys": ["image", "extra", "label"],
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"label_key": "label",
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"spatial_size": [4, 4, 2],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image_key": None,
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"image_threshold": 0,
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"allow_smaller": True,
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},
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{"image": np.zeros([3, 3, 3, 3]) - 1, "extra": np.zeros([3, 3, 3, 3]), "label": np.ones([3, 3, 3, 3])},
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(3, 3, 3, 2),
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],
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[
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{
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"keys": ["image", "extra", "label"],
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"label_key": "label",
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"spatial_size": [4, 4, 4],
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"pos": 1,
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"neg": 1,
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"num_samples": 2,
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"image_key": None,
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"image_threshold": 0,
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"allow_smaller": True,
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},
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{"image": np.zeros([3, 3, 3, 3]) - 1, "extra": np.zeros([3, 3, 3, 3]), "label": np.ones([3, 3, 3, 3])},
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(3, 3, 3, 3),
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],
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]
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class TestRandCropByPosNegLabeld(unittest.TestCase):
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@staticmethod
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def convert_data_type(im_type, d, keys=("img", "image", "label")):
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out = deepcopy(d)
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for k, v in out.items():
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if k in keys and isinstance(v, np.ndarray):
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out[k] = im_type(v)
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return out
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@parameterized.expand(TESTS)
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def test_type_shape(self, input_param, input_data, expected_shape):
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for p in TEST_NDARRAYS_ALL:
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input_param_mod = self.convert_data_type(p, input_param)
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input_data_mod = self.convert_data_type(p, input_data)
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cropper = RandCropByPosNegLabeld(**input_param_mod)
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cropper.set_random_state(0)
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result = cropper(input_data_mod)
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self.assertListEqual(cropper.cropper.spatial_size, input_param["spatial_size"])
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self.assertIsInstance(result, list)
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_len = len(tuple(input_data.keys()))
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self.assertTupleEqual(tuple(result[0].keys())[:_len], tuple(input_data.keys()))
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for k in ("image", "extra", "label"):
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self.assertTupleEqual(result[0][k].shape, expected_shape)
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for i, item in enumerate(result):
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self.assertEqual(item[k].meta["patch_index"], i)
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def test_correct_center(self):
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cropper = RandCropByPosNegLabeld(keys="label", label_key="label", spatial_size=[3, 3])
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cropper.set_random_state(0)
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test_image = {"label": np.asarray([[[1, 0, 0, 1], [0, 0, 0, 0], [0, 0, 0, 0], [1, 0, 0, 1]]])}
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result = cropper(test_image)
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np.testing.assert_allclose(result[0]["label"], np.asarray([[[0, 0, 1], [0, 0, 0], [0, 0, 0]]]))
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@parameterized.expand(TESTS)
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def test_pending_ops(self, input_param, input_data, _expected_shape):
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for p in TEST_NDARRAYS_ALL:
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input_param_mod = self.convert_data_type(p, input_param)
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input_data_mod = self.convert_data_type(p, input_data)
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cropper = RandCropByPosNegLabeld(**input_param_mod)
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# non-lazy
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cropper.set_random_state(0)
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expected = cropper(input_data_mod)
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self.assertIsInstance(expected[0]["image"], MetaTensor)
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# lazy
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cropper.set_random_state(0)
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cropper.lazy = True
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pending_result = cropper(input_data_mod)
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for i, _pending_result in enumerate(pending_result):
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self.assertIsInstance(_pending_result["image"], MetaTensor)
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assert_allclose(_pending_result["image"].peek_pending_affine(), expected[i]["image"].affine)
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assert_allclose(_pending_result["image"].peek_pending_shape(), expected[i]["image"].shape[1:])
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# only support nearest
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overrides = {"mode": "nearest", "align_corners": False}
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result_image = apply_pending(_pending_result["image"], overrides=overrides)[0]
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result_extra = apply_pending(_pending_result["extra"], overrides=overrides)[0]
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# compare
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assert_allclose(result_image, expected[i]["image"], rtol=1e-5)
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assert_allclose(result_extra, expected[i]["extra"], rtol=1e-5)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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from parameterized import parameterized
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from monai.transforms import RandCuCIMd
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from monai.utils import optional_import, set_determinism
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from tests.test_utils import HAS_CUPY, skip_if_no_cuda
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_, has_cut = optional_import("cucim.core.operations.expose.transform")
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cp, _ = optional_import("cupy")
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set_determinism(seed=0)
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TEST_CASE_COLOR_JITTER_1 = [
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{"name": "color_jitter", "brightness": 0.0, "contrast": 0.0, "saturation": 0.0, "hue": 0.0},
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np.array([[[0, 1], [2, 3]], [[0, 10], [20, 30]], [[0, 50], [100, 150]]], dtype=np.uint8),
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np.array([[[0, 1], [2, 3]], [[0, 10], [20, 30]], [[0, 50], [100, 150]]], dtype=np.uint8),
|
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]
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+
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TEST_CASE_FLIP_1 = [
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{"name": "image_flip", "spatial_axis": -1},
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np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
37
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+
np.array([[[1.0, 0.0], [3.0, 2.0]], [[1.0, 0.0], [3.0, 2.0]], [[1.0, 0.0], [3.0, 2.0]]], dtype=np.float32),
|
38
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+
]
|
39
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+
|
40
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+
TEST_CASE_RAND_ROTATE_1 = [
|
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{"name": "rand_image_rotate_90", "prob": 1.0, "max_k": 1, "spatial_axis": (-2, -1)},
|
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np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
43
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+
np.array([[[1.0, 3.0], [0.0, 2.0]], [[1.0, 3.0], [0.0, 2.0]], [[1.0, 3.0], [0.0, 2.0]]], dtype=np.float32),
|
44
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+
]
|
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+
|
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TEST_CASE_RAND_ROTATE_2 = [
|
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{"name": "rand_image_rotate_90", "prob": 0.0, "max_k": 1, "spatial_axis": (-2, -1)},
|
48
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+
np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
49
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+
np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
50
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+
]
|
51
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+
|
52
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+
TEST_CASE_SCALE_INTENSITY_1 = [
|
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{"name": "scale_intensity_range", "a_min": 0.0, "a_max": 4.0, "b_min": 0.0, "b_max": 1.0, "clip": False},
|
54
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+
np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
55
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+
np.array([[[0.0, 0.25], [0.5, 0.75]], [[0.0, 0.25], [0.5, 0.75]], [[0.0, 0.25], [0.5, 0.75]]], dtype=np.float32),
|
56
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+
]
|
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+
|
58
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+
TEST_CASE_ZOOM_1 = [
|
59
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+
{"name": "zoom", "zoom_factor": (0.5, 0.5)},
|
60
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np.mgrid[:3, 1:4].astype(dtype=np.float32),
|
61
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+
np.concatenate([np.ones((1, 3, 3), dtype=np.float32) * 1.0, np.ones((1, 3, 3), dtype=np.float32) * 2.0]),
|
62
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+
]
|
63
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+
|
64
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+
TEST_CASE_RAND_ZOOM_1 = [
|
65
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{"name": "rand_zoom", "prob": 1.0, "min_zoom": 0.5, "max_zoom": 0.5},
|
66
|
+
np.mgrid[:3, 1:4].astype(dtype=np.float32),
|
67
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+
np.concatenate([np.ones((1, 3, 3), dtype=np.float32) * 1.0, np.ones((1, 3, 3), dtype=np.float32) * 2.0]),
|
68
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+
]
|
69
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+
|
70
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+
TEST_CASE_RAND_ZOOM_2 = [
|
71
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+
{"name": "rand_zoom", "prob": 0.0, "min_zoom": 0.5, "max_zoom": 0.5},
|
72
|
+
np.mgrid[:3, 1:4].astype(dtype=np.float32),
|
73
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+
np.mgrid[:3, 1:4].astype(dtype=np.float32),
|
74
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+
]
|
75
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+
|
76
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+
|
77
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+
@skip_if_no_cuda
|
78
|
+
@unittest.skipUnless(HAS_CUPY, "CuPy is required.")
|
79
|
+
@unittest.skipUnless(has_cut, "cuCIM transforms are required.")
|
80
|
+
class TestRandCuCIMDict(unittest.TestCase):
|
81
|
+
@parameterized.expand(
|
82
|
+
[
|
83
|
+
TEST_CASE_COLOR_JITTER_1,
|
84
|
+
TEST_CASE_FLIP_1,
|
85
|
+
TEST_CASE_RAND_ROTATE_1,
|
86
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+
TEST_CASE_RAND_ROTATE_2,
|
87
|
+
TEST_CASE_SCALE_INTENSITY_1,
|
88
|
+
TEST_CASE_ZOOM_1,
|
89
|
+
TEST_CASE_RAND_ZOOM_1,
|
90
|
+
TEST_CASE_RAND_ZOOM_2,
|
91
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+
]
|
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+
)
|
93
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+
def test_tramsforms_numpy_single(self, params, input, expected):
|
94
|
+
input = {"image": np.copy(input)}
|
95
|
+
output = RandCuCIMd(keys="image", **params)(input)["image"]
|
96
|
+
self.assertTrue(output.dtype == expected.dtype)
|
97
|
+
self.assertTrue(isinstance(output, np.ndarray))
|
98
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+
cp.testing.assert_allclose(output, expected)
|
99
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+
|
100
|
+
@parameterized.expand(
|
101
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[
|
102
|
+
TEST_CASE_COLOR_JITTER_1,
|
103
|
+
TEST_CASE_FLIP_1,
|
104
|
+
TEST_CASE_RAND_ROTATE_1,
|
105
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+
TEST_CASE_RAND_ROTATE_2,
|
106
|
+
TEST_CASE_SCALE_INTENSITY_1,
|
107
|
+
TEST_CASE_ZOOM_1,
|
108
|
+
TEST_CASE_RAND_ZOOM_1,
|
109
|
+
TEST_CASE_RAND_ZOOM_2,
|
110
|
+
]
|
111
|
+
)
|
112
|
+
def test_tramsforms_numpy_batch(self, params, input, expected):
|
113
|
+
input = {"image": np.copy(input[cp.newaxis, ...])}
|
114
|
+
expected = expected[cp.newaxis, ...]
|
115
|
+
output = RandCuCIMd(keys="image", **params)(input)["image"]
|
116
|
+
self.assertTrue(output.dtype == expected.dtype)
|
117
|
+
self.assertTrue(isinstance(output, np.ndarray))
|
118
|
+
cp.testing.assert_allclose(output, expected)
|
119
|
+
|
120
|
+
@parameterized.expand(
|
121
|
+
[
|
122
|
+
TEST_CASE_COLOR_JITTER_1,
|
123
|
+
TEST_CASE_FLIP_1,
|
124
|
+
TEST_CASE_RAND_ROTATE_1,
|
125
|
+
TEST_CASE_RAND_ROTATE_2,
|
126
|
+
TEST_CASE_SCALE_INTENSITY_1,
|
127
|
+
TEST_CASE_ZOOM_1,
|
128
|
+
TEST_CASE_RAND_ZOOM_1,
|
129
|
+
TEST_CASE_RAND_ZOOM_2,
|
130
|
+
]
|
131
|
+
)
|
132
|
+
def test_tramsforms_cupy_single(self, params, input, expected):
|
133
|
+
input = {"image": cp.asarray(input)}
|
134
|
+
expected = cp.asarray(expected)
|
135
|
+
output = RandCuCIMd(keys="image", **params)(input)["image"]
|
136
|
+
self.assertTrue(output.dtype == expected.dtype)
|
137
|
+
self.assertTrue(isinstance(output, cp.ndarray))
|
138
|
+
cp.testing.assert_allclose(output, expected)
|
139
|
+
|
140
|
+
@parameterized.expand(
|
141
|
+
[
|
142
|
+
TEST_CASE_COLOR_JITTER_1,
|
143
|
+
TEST_CASE_FLIP_1,
|
144
|
+
TEST_CASE_RAND_ROTATE_1,
|
145
|
+
TEST_CASE_RAND_ROTATE_2,
|
146
|
+
TEST_CASE_SCALE_INTENSITY_1,
|
147
|
+
TEST_CASE_ZOOM_1,
|
148
|
+
TEST_CASE_RAND_ZOOM_1,
|
149
|
+
TEST_CASE_RAND_ZOOM_2,
|
150
|
+
]
|
151
|
+
)
|
152
|
+
def test_tramsforms_cupy_batch(self, params, input, expected):
|
153
|
+
input = {"image": cp.asarray(input)[cp.newaxis, ...]}
|
154
|
+
expected = cp.asarray(expected)[cp.newaxis, ...]
|
155
|
+
output = RandCuCIMd(keys="image", **params)(input)["image"]
|
156
|
+
self.assertTrue(output.dtype == expected.dtype)
|
157
|
+
self.assertTrue(isinstance(output, cp.ndarray))
|
158
|
+
cp.testing.assert_allclose(output, expected)
|
159
|
+
|
160
|
+
|
161
|
+
if __name__ == "__main__":
|
162
|
+
unittest.main()
|
@@ -0,0 +1,162 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.transforms import RandCuCIM
|
20
|
+
from monai.utils import optional_import, set_determinism
|
21
|
+
from tests.test_utils import HAS_CUPY, skip_if_no_cuda
|
22
|
+
|
23
|
+
_, has_cut = optional_import("cucim.core.operations.expose.transform")
|
24
|
+
cp, _ = optional_import("cupy")
|
25
|
+
|
26
|
+
set_determinism(seed=0)
|
27
|
+
|
28
|
+
TEST_CASE_COLOR_JITTER_1 = [
|
29
|
+
{"name": "color_jitter", "brightness": 0.0, "contrast": 0.0, "saturation": 0.0, "hue": 0.0},
|
30
|
+
np.array([[[0, 1], [2, 3]], [[0, 10], [20, 30]], [[0, 50], [100, 150]]], dtype=np.uint8),
|
31
|
+
np.array([[[0, 1], [2, 3]], [[0, 10], [20, 30]], [[0, 50], [100, 150]]], dtype=np.uint8),
|
32
|
+
]
|
33
|
+
|
34
|
+
TEST_CASE_FLIP_1 = [
|
35
|
+
{"name": "image_flip", "spatial_axis": -1},
|
36
|
+
np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
37
|
+
np.array([[[1.0, 0.0], [3.0, 2.0]], [[1.0, 0.0], [3.0, 2.0]], [[1.0, 0.0], [3.0, 2.0]]], dtype=np.float32),
|
38
|
+
]
|
39
|
+
|
40
|
+
TEST_CASE_RAND_ROTATE_1 = [
|
41
|
+
{"name": "rand_image_rotate_90", "prob": 1.0, "max_k": 1, "spatial_axis": (-2, -1)},
|
42
|
+
np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
43
|
+
np.array([[[1.0, 3.0], [0.0, 2.0]], [[1.0, 3.0], [0.0, 2.0]], [[1.0, 3.0], [0.0, 2.0]]], dtype=np.float32),
|
44
|
+
]
|
45
|
+
|
46
|
+
TEST_CASE_RAND_ROTATE_2 = [
|
47
|
+
{"name": "rand_image_rotate_90", "prob": 0.0, "max_k": 1, "spatial_axis": (-2, -1)},
|
48
|
+
np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
49
|
+
np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
50
|
+
]
|
51
|
+
|
52
|
+
TEST_CASE_SCALE_INTENSITY_1 = [
|
53
|
+
{"name": "scale_intensity_range", "a_min": 0.0, "a_max": 4.0, "b_min": 0.0, "b_max": 1.0, "clip": False},
|
54
|
+
np.array([[[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]], [[0.0, 1.0], [2.0, 3.0]]], dtype=np.float32),
|
55
|
+
np.array([[[0.0, 0.25], [0.5, 0.75]], [[0.0, 0.25], [0.5, 0.75]], [[0.0, 0.25], [0.5, 0.75]]], dtype=np.float32),
|
56
|
+
]
|
57
|
+
|
58
|
+
TEST_CASE_ZOOM_1 = [
|
59
|
+
{"name": "zoom", "zoom_factor": (0.5, 0.5)},
|
60
|
+
np.mgrid[:3, 1:4].astype(dtype=np.float32),
|
61
|
+
np.concatenate([np.ones((1, 3, 3), dtype=np.float32) * 1.0, np.ones((1, 3, 3), dtype=np.float32) * 2.0]),
|
62
|
+
]
|
63
|
+
|
64
|
+
TEST_CASE_RAND_ZOOM_1 = [
|
65
|
+
{"name": "rand_zoom", "prob": 1.0, "min_zoom": 0.5, "max_zoom": 0.5},
|
66
|
+
np.mgrid[:3, 1:4].astype(dtype=np.float32),
|
67
|
+
np.concatenate([np.ones((1, 3, 3), dtype=np.float32) * 1.0, np.ones((1, 3, 3), dtype=np.float32) * 2.0]),
|
68
|
+
]
|
69
|
+
|
70
|
+
TEST_CASE_RAND_ZOOM_2 = [
|
71
|
+
{"name": "rand_zoom", "prob": 0.0, "min_zoom": 0.5, "max_zoom": 0.5},
|
72
|
+
np.mgrid[:3, 1:4].astype(dtype=np.float32),
|
73
|
+
np.mgrid[:3, 1:4].astype(dtype=np.float32),
|
74
|
+
]
|
75
|
+
|
76
|
+
|
77
|
+
@skip_if_no_cuda
|
78
|
+
@unittest.skipUnless(HAS_CUPY, "CuPy is required.")
|
79
|
+
@unittest.skipUnless(has_cut, "cuCIM transforms are required.")
|
80
|
+
class TestRandCuCIM(unittest.TestCase):
|
81
|
+
@parameterized.expand(
|
82
|
+
[
|
83
|
+
TEST_CASE_COLOR_JITTER_1,
|
84
|
+
TEST_CASE_FLIP_1,
|
85
|
+
TEST_CASE_RAND_ROTATE_1,
|
86
|
+
TEST_CASE_RAND_ROTATE_2,
|
87
|
+
TEST_CASE_SCALE_INTENSITY_1,
|
88
|
+
TEST_CASE_ZOOM_1,
|
89
|
+
TEST_CASE_RAND_ZOOM_1,
|
90
|
+
TEST_CASE_RAND_ZOOM_2,
|
91
|
+
]
|
92
|
+
)
|
93
|
+
def test_tramsforms_numpy_single(self, params, input, expected):
|
94
|
+
input = np.copy(input)
|
95
|
+
output = RandCuCIM(**params)(input)
|
96
|
+
self.assertTrue(output.dtype == expected.dtype)
|
97
|
+
self.assertTrue(isinstance(output, np.ndarray))
|
98
|
+
cp.testing.assert_allclose(output, expected)
|
99
|
+
|
100
|
+
@parameterized.expand(
|
101
|
+
[
|
102
|
+
TEST_CASE_COLOR_JITTER_1,
|
103
|
+
TEST_CASE_FLIP_1,
|
104
|
+
TEST_CASE_RAND_ROTATE_1,
|
105
|
+
TEST_CASE_RAND_ROTATE_2,
|
106
|
+
TEST_CASE_SCALE_INTENSITY_1,
|
107
|
+
TEST_CASE_ZOOM_1,
|
108
|
+
TEST_CASE_RAND_ZOOM_1,
|
109
|
+
TEST_CASE_RAND_ZOOM_2,
|
110
|
+
]
|
111
|
+
)
|
112
|
+
def test_tramsforms_numpy_batch(self, params, input, expected):
|
113
|
+
input = np.copy(input[cp.newaxis, ...])
|
114
|
+
expected = expected[cp.newaxis, ...]
|
115
|
+
output = RandCuCIM(**params)(input)
|
116
|
+
self.assertTrue(output.dtype == expected.dtype)
|
117
|
+
self.assertTrue(isinstance(output, np.ndarray))
|
118
|
+
cp.testing.assert_allclose(output, expected)
|
119
|
+
|
120
|
+
@parameterized.expand(
|
121
|
+
[
|
122
|
+
TEST_CASE_COLOR_JITTER_1,
|
123
|
+
TEST_CASE_FLIP_1,
|
124
|
+
TEST_CASE_RAND_ROTATE_1,
|
125
|
+
TEST_CASE_RAND_ROTATE_2,
|
126
|
+
TEST_CASE_SCALE_INTENSITY_1,
|
127
|
+
TEST_CASE_ZOOM_1,
|
128
|
+
TEST_CASE_RAND_ZOOM_1,
|
129
|
+
TEST_CASE_RAND_ZOOM_2,
|
130
|
+
]
|
131
|
+
)
|
132
|
+
def test_tramsforms_cupy_single(self, params, input, expected):
|
133
|
+
input = cp.asarray(input)
|
134
|
+
expected = cp.asarray(expected)
|
135
|
+
output = RandCuCIM(**params)(input)
|
136
|
+
self.assertTrue(output.dtype == expected.dtype)
|
137
|
+
self.assertTrue(isinstance(output, cp.ndarray))
|
138
|
+
cp.testing.assert_allclose(output, expected)
|
139
|
+
|
140
|
+
@parameterized.expand(
|
141
|
+
[
|
142
|
+
TEST_CASE_COLOR_JITTER_1,
|
143
|
+
TEST_CASE_FLIP_1,
|
144
|
+
TEST_CASE_RAND_ROTATE_1,
|
145
|
+
TEST_CASE_RAND_ROTATE_2,
|
146
|
+
TEST_CASE_SCALE_INTENSITY_1,
|
147
|
+
TEST_CASE_ZOOM_1,
|
148
|
+
TEST_CASE_RAND_ZOOM_1,
|
149
|
+
TEST_CASE_RAND_ZOOM_2,
|
150
|
+
]
|
151
|
+
)
|
152
|
+
def test_tramsforms_cupy_batch(self, params, input, expected):
|
153
|
+
input = cp.asarray(input)[cp.newaxis, ...]
|
154
|
+
expected = cp.asarray(expected)[cp.newaxis, ...]
|
155
|
+
output = RandCuCIM(**params)(input)
|
156
|
+
self.assertTrue(output.dtype == expected.dtype)
|
157
|
+
self.assertTrue(isinstance(output, cp.ndarray))
|
158
|
+
cp.testing.assert_allclose(output, expected)
|
159
|
+
|
160
|
+
|
161
|
+
if __name__ == "__main__":
|
162
|
+
unittest.main()
|