monai-weekly 1.5.dev2505__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/meta_tensor.py +5 -0
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/jupyter_utils.py +1 -1
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- monai/visualize/img2tensorboard.py +2 -2
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
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- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2505.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import torch
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from parameterized import parameterized
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from monai.transforms import FlattenSubKeysd
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A = torch.randn(2, 2)
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B = torch.randn(3, 3)
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C = torch.randn(1, 3)
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I = torch.randn(2, 3)
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D1 = {"a": A, "b": B}
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D2 = {"a": A, "b": B, "c": C}
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TEST_CASE_0 = [{"keys": "pred"}, {"image": I, "pred": D1}, {"a": A, "b": B, "image": I}]
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TEST_CASE_1 = [{"keys": "pred"}, {"image": I, "pred": D2}, {"a": A, "b": B, "c": C, "image": I}]
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TEST_CASE_2 = [{"keys": "pred", "sub_keys": ["a", "b"]}, {"image": I, "pred": D1}, {"a": A, "b": B, "image": I}]
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TEST_CASE_3 = [{"keys": "pred", "sub_keys": ["a", "b"]}, {"image": I, "pred": D2}, {"a": A, "b": B, "image": I}]
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TEST_CASE_4 = [
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{"keys": "pred", "sub_keys": ["a", "b"], "delete_keys": False},
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{"image": I, "pred": D1},
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{"a": A, "b": B, "image": I, "pred": D1},
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]
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TEST_CASE_5 = [
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{"keys": "pred", "sub_keys": ["a", "b"], "prefix": "new"},
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{"image": I, "pred": D2},
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{"new_a": A, "new_b": B, "image": I},
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]
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TEST_CASE_ERROR_1 = [ # error for duplicate key
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{"keys": "pred", "sub_keys": ["a", "b"]},
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{"image": I, "pred": D2, "a": None},
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]
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class TestFlattenSubKeysd(unittest.TestCase):
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@parameterized.expand([TEST_CASE_0, TEST_CASE_1, TEST_CASE_2, TEST_CASE_3, TEST_CASE_4, TEST_CASE_5])
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def test_dict(self, params, input_data, expected):
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result = FlattenSubKeysd(**params)(input_data)
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self.assertSetEqual(set(result.keys()), set(expected.keys()))
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for k in expected:
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self.assertEqual(id(result[k]), id(expected[k]))
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@parameterized.expand([TEST_CASE_ERROR_1])
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def test_error(self, params, input_data):
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with self.assertRaises(ValueError):
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FlattenSubKeysd(**params)(input_data)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.data.meta_obj import set_track_meta
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from monai.data.meta_tensor import MetaTensor
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from monai.transforms import Flip
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from tests.lazy_transforms_utils import test_resampler_lazy
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from tests.test_utils import (
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TEST_DEVICES,
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TEST_NDARRAYS_ALL,
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NumpyImageTestCase2D,
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assert_allclose,
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test_local_inversion,
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)
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INVALID_CASES = [("wrong_axis", ["s", 1], TypeError), ("not_numbers", "s", TypeError)]
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VALID_CASES = [("no_axis", None), ("one_axis", 1), ("many_axis", [0, 1]), ("negative_axis", [0, -1])]
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TORCH_CASES = []
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for track_meta in (False, True):
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for device in TEST_DEVICES:
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TORCH_CASES.append([[0, 1], torch.zeros((1, 3, 2)), track_meta, *device])
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class TestFlip(NumpyImageTestCase2D):
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@parameterized.expand(INVALID_CASES)
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def test_invalid_inputs(self, _, spatial_axis, raises):
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with self.assertRaises(raises):
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flip = Flip(spatial_axis)
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flip(self.imt[0])
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@parameterized.expand(VALID_CASES)
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def test_correct_results(self, _, spatial_axis):
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for p in TEST_NDARRAYS_ALL:
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im = p(self.imt[0])
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init_param = {"spatial_axis": spatial_axis}
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flip = Flip(**init_param)
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expected = [np.flip(channel, spatial_axis) for channel in self.imt[0]]
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expected = np.stack(expected)
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call_param = {"img": im}
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result = flip(**call_param)
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test_resampler_lazy(flip, result, init_param, call_param)
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assert_allclose(result, p(expected), type_test="tensor")
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test_local_inversion(flip, result, im)
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@parameterized.expand(TORCH_CASES)
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def test_torch(self, spatial_axis, img: torch.Tensor, track_meta: bool, device):
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set_track_meta(track_meta)
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img = img.to(device)
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init_param = {"spatial_axis": spatial_axis}
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xform = Flip(**init_param)
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call_param = {"img": img}
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res = xform(**call_param) # type: ignore[arg-type]
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self.assertEqual(img.shape, res.shape)
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if track_meta:
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test_resampler_lazy(xform, res, init_param, call_param)
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self.assertIsInstance(res, MetaTensor)
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else:
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self.assertNotIsInstance(res, MetaTensor)
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self.assertIsInstance(res, torch.Tensor)
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with self.assertRaisesRegex(ValueError, "MetaTensor"):
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xform.inverse(res)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai import config
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from monai.data.meta_obj import set_track_meta
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from monai.data.meta_tensor import MetaTensor
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from monai.transforms import Flipd
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from tests.lazy_transforms_utils import test_resampler_lazy
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from tests.test_utils import (
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TEST_DEVICES,
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TEST_NDARRAYS_ALL,
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NumpyImageTestCase2D,
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assert_allclose,
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test_local_inversion,
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)
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INVALID_CASES = [("wrong_axis", ["s", 1], TypeError), ("not_numbers", "s", TypeError)]
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VALID_CASES = [("no_axis", None), ("one_axis", 1), ("many_axis", [0, 1])]
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TORCH_CASES = []
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for track_meta in (False, True):
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for device in TEST_DEVICES:
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TORCH_CASES.append([[0, 1], torch.zeros((1, 3, 2)), track_meta, *device])
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class TestFlipd(NumpyImageTestCase2D):
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@parameterized.expand(INVALID_CASES)
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def test_invalid_cases(self, _, spatial_axis, raises):
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with self.assertRaises(raises):
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flip = Flipd(keys="img", spatial_axis=spatial_axis)
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flip({"img": self.imt[0]})
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@parameterized.expand(VALID_CASES)
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def test_correct_results(self, _, spatial_axis):
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for p in TEST_NDARRAYS_ALL:
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init_param = {"keys": "img", "spatial_axis": spatial_axis}
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flip = Flipd(**init_param)
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expected = [np.flip(channel, spatial_axis) for channel in self.imt[0]]
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expected = np.stack(expected)
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im = p(self.imt[0])
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call_param = {"data": {"img": im}}
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result = flip(**call_param)
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test_resampler_lazy(flip, result, init_param, call_param, output_key="img")
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assert_allclose(result["img"], p(expected), type_test="tensor")
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test_local_inversion(flip, {"img": result["img"]}, {"img": im}, "img")
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@parameterized.expand(TORCH_CASES)
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def test_torch(self, spatial_axis, img: torch.Tensor, track_meta: bool, device):
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set_track_meta(track_meta)
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img = img.to(device)
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init_param = {"keys": "image", "spatial_axis": spatial_axis}
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xform = Flipd(**init_param)
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call_param = {"data": {"image": img}}
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res = xform(**call_param) # type: ignore
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self.assertEqual(img.shape, res["image"].shape)
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if track_meta:
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test_resampler_lazy(xform, res, init_param, call_param, output_key="image")
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self.assertIsInstance(res["image"], MetaTensor)
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else:
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self.assertNotIsInstance(res["image"], MetaTensor)
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self.assertIsInstance(res["image"], torch.Tensor)
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with self.assertRaisesRegex(ValueError, "MetaTensor"):
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xform.inverse(res)
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@unittest.skipIf(not config.USE_META_DICT, "not using meta dict")
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def test_meta_dict(self):
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xform = Flipd("image", [0, 1])
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res = xform({"image": torch.zeros(1, 3, 4)})
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self.assertEqual(res["image"].applied_operations, res["image_transforms"])
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.data.synthetic import create_test_image_2d, create_test_image_3d
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from monai.transforms import Fourier
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from monai.utils.misc import set_determinism
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from tests.test_utils import SkipIfBeforePyTorchVersion, SkipIfNoModule
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TEST_CASES = [((128, 64),), ((64, 48, 80),)]
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@SkipIfBeforePyTorchVersion((1, 8))
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@SkipIfNoModule("torch.fft")
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class TestFourier(unittest.TestCase):
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def setUp(self):
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set_determinism(0)
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super().setUp()
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def tearDown(self):
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set_determinism(None)
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@staticmethod
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def get_data(img_shape):
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create_test_image = create_test_image_2d if len(img_shape) == 2 else create_test_image_3d
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im = create_test_image(*img_shape, num_objs=4, rad_max=20, noise_max=0.0, num_seg_classes=5)[0][None]
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return torch.Tensor(im)
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@parameterized.expand(TEST_CASES)
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def test_forward(self, img_shape):
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n_dims = len(img_shape[1:])
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x = self.get_data(img_shape)
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t = Fourier()
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out = t.shift_fourier(x, n_dims)
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expect = torch.fft.fftshift(torch.fft.fftn(x, dim=tuple(range(-n_dims, 0))), dim=tuple(range(-n_dims, 0)))
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np.testing.assert_allclose(out, expect)
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@parameterized.expand(TEST_CASES)
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def test_backward(self, img_shape):
|
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n_dims = len(img_shape[1:])
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x = self.get_data(img_shape)
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t = Fourier()
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out = t.inv_shift_fourier(x, n_dims)
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expect = torch.fft.ifftn(
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torch.fft.ifftshift(x, dim=tuple(range(-n_dims, 0))), dim=tuple(range(-n_dims, 0))
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).real
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np.testing.assert_allclose(out, expect)
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
|
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+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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+
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from __future__ import annotations
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import unittest
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from parameterized import parameterized
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from monai.transforms import GaussianSharpen
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from tests.test_utils import TEST_NDARRAYS, assert_allclose
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TESTS = []
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for p in TEST_NDARRAYS:
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TESTS.append(
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[
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{},
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p([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]),
|
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p(
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[
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[
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[4.1081963, 3.4950666, 4.1081963],
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[3.7239995, 2.8491793, 3.7239995],
|
33
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[4.569839, 3.9529324, 4.569839],
|
34
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+
],
|
35
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[[10.616725, 9.081067, 10.616725], [9.309998, 7.12295, 9.309998], [11.078365, 9.538931, 11.078365]],
|
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]
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),
|
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]
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)
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TESTS.append(
|
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[
|
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{"sigma1": 1.0, "sigma2": 0.75, "alpha": 20},
|
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p([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]),
|
45
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+
p(
|
46
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+
[
|
47
|
+
[
|
48
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+
[4.513644, 4.869134, 4.513644],
|
49
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+
[8.467242, 9.4004135, 8.467242],
|
50
|
+
[10.416813, 12.0653515, 10.416813],
|
51
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+
],
|
52
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+
[
|
53
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+
[15.711488, 17.569994, 15.711488],
|
54
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+
[21.16811, 23.501041, 21.16811],
|
55
|
+
[21.614658, 24.766209, 21.614658],
|
56
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+
],
|
57
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]
|
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),
|
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]
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)
|
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TESTS.append(
|
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[
|
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+
{"sigma1": (0.5, 1.0), "sigma2": (0.5, 0.75), "alpha": 20},
|
65
|
+
p([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]),
|
66
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+
p(
|
67
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+
[
|
68
|
+
[
|
69
|
+
[3.3324685, 3.335536, 3.3324673],
|
70
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+
[7.7666636, 8.16056, 7.7666636],
|
71
|
+
[12.662973, 14.317837, 12.6629715],
|
72
|
+
],
|
73
|
+
[
|
74
|
+
[15.329051, 16.57557, 15.329051],
|
75
|
+
[19.41665, 20.40139, 19.416655],
|
76
|
+
[24.659554, 27.557873, 24.659554],
|
77
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+
],
|
78
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+
]
|
79
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+
),
|
80
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]
|
81
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+
)
|
82
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|
83
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|
84
|
+
class TestGaussianSharpen(unittest.TestCase):
|
85
|
+
@parameterized.expand(TESTS)
|
86
|
+
def test_value(self, arguments, image, expected_data):
|
87
|
+
result = GaussianSharpen(**arguments)(image)
|
88
|
+
assert_allclose(result, expected_data, atol=0, rtol=1e-4, type_test="tensor")
|
89
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+
|
90
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+
|
91
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if __name__ == "__main__":
|
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unittest.main()
|
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|
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1
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# Copyright (c) MONAI Consortium
|
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# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
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+
|
14
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+
import unittest
|
15
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+
|
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+
import numpy as np
|
17
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+
from parameterized import parameterized
|
18
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+
|
19
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+
from monai.transforms import GaussianSharpend
|
20
|
+
from tests.test_utils import TEST_NDARRAYS, assert_allclose
|
21
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+
|
22
|
+
TESTS = []
|
23
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for p in TEST_NDARRAYS:
|
24
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+
TESTS.append(
|
25
|
+
[
|
26
|
+
{"keys": "img"},
|
27
|
+
{"img": p(np.array([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]))},
|
28
|
+
np.array(
|
29
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+
[
|
30
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+
[
|
31
|
+
[4.1081963, 3.4950666, 4.1081963],
|
32
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[3.7239995, 2.8491793, 3.7239995],
|
33
|
+
[4.569839, 3.9529324, 4.569839],
|
34
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+
],
|
35
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+
[[10.616725, 9.081067, 10.616725], [9.309998, 7.12295, 9.309998], [11.078365, 9.538931, 11.078365]],
|
36
|
+
]
|
37
|
+
),
|
38
|
+
]
|
39
|
+
)
|
40
|
+
|
41
|
+
TESTS.append(
|
42
|
+
[
|
43
|
+
{"keys": "img", "sigma1": 1.0, "sigma2": 0.75, "alpha": 20},
|
44
|
+
{"img": p(np.array([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]))},
|
45
|
+
np.array(
|
46
|
+
[
|
47
|
+
[
|
48
|
+
[4.513644, 4.869134, 4.513644],
|
49
|
+
[8.467242, 9.4004135, 8.467242],
|
50
|
+
[10.416813, 12.0653515, 10.416813],
|
51
|
+
],
|
52
|
+
[
|
53
|
+
[15.711488, 17.569994, 15.711488],
|
54
|
+
[21.16811, 23.501041, 21.16811],
|
55
|
+
[21.614658, 24.766209, 21.614658],
|
56
|
+
],
|
57
|
+
]
|
58
|
+
),
|
59
|
+
]
|
60
|
+
)
|
61
|
+
|
62
|
+
TESTS.append(
|
63
|
+
[
|
64
|
+
{"keys": "img", "sigma1": (0.5, 1.0), "sigma2": (0.5, 0.75), "alpha": 20},
|
65
|
+
{"img": p(np.array([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]))},
|
66
|
+
np.array(
|
67
|
+
[
|
68
|
+
[
|
69
|
+
[3.3324685, 3.335536, 3.3324673],
|
70
|
+
[7.7666636, 8.16056, 7.7666636],
|
71
|
+
[12.662973, 14.317837, 12.6629715],
|
72
|
+
],
|
73
|
+
[
|
74
|
+
[15.329051, 16.57557, 15.329051],
|
75
|
+
[19.41665, 20.40139, 19.416655],
|
76
|
+
[24.659554, 27.557873, 24.659554],
|
77
|
+
],
|
78
|
+
]
|
79
|
+
),
|
80
|
+
]
|
81
|
+
)
|
82
|
+
|
83
|
+
|
84
|
+
class TestGaussianSharpend(unittest.TestCase):
|
85
|
+
@parameterized.expand(TESTS)
|
86
|
+
def test_value(self, arguments, image, expected_data):
|
87
|
+
result = GaussianSharpend(**arguments)(image)
|
88
|
+
assert_allclose(result["img"], expected_data, rtol=1e-4, type_test="tensor")
|
89
|
+
|
90
|
+
|
91
|
+
if __name__ == "__main__":
|
92
|
+
unittest.main()
|
@@ -0,0 +1,96 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
from parameterized import parameterized
|
17
|
+
|
18
|
+
from monai.transforms import GaussianSmooth
|
19
|
+
from tests.test_utils import TEST_NDARRAYS, assert_allclose
|
20
|
+
|
21
|
+
TESTS = []
|
22
|
+
|
23
|
+
for p in TEST_NDARRAYS:
|
24
|
+
TESTS.append(
|
25
|
+
[
|
26
|
+
{"sigma": 1.5},
|
27
|
+
p([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]),
|
28
|
+
p(
|
29
|
+
[
|
30
|
+
[
|
31
|
+
[0.59167546, 0.69312394, 0.59167546],
|
32
|
+
[0.7956997, 0.93213004, 0.7956997],
|
33
|
+
[0.7668002, 0.8982755, 0.7668002],
|
34
|
+
],
|
35
|
+
[
|
36
|
+
[1.6105323, 1.8866735, 1.6105323],
|
37
|
+
[1.9892492, 2.3303251, 1.9892492],
|
38
|
+
[1.7856569, 2.091825, 1.7856569],
|
39
|
+
],
|
40
|
+
]
|
41
|
+
),
|
42
|
+
]
|
43
|
+
)
|
44
|
+
|
45
|
+
TESTS.append(
|
46
|
+
[
|
47
|
+
{"sigma": 0.5},
|
48
|
+
p([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]),
|
49
|
+
p(
|
50
|
+
[
|
51
|
+
[
|
52
|
+
[0.8424794, 0.99864554, 0.8424794],
|
53
|
+
[1.678146, 1.9892154, 1.678146],
|
54
|
+
[1.9889624, 2.3576462, 1.9889624],
|
55
|
+
],
|
56
|
+
[
|
57
|
+
[2.966061, 3.5158648, 2.966061],
|
58
|
+
[4.1953645, 4.973038, 4.1953645],
|
59
|
+
[4.112544, 4.8748655, 4.1125436],
|
60
|
+
],
|
61
|
+
]
|
62
|
+
),
|
63
|
+
]
|
64
|
+
)
|
65
|
+
|
66
|
+
TESTS.append(
|
67
|
+
[
|
68
|
+
{"sigma": [1.5, 0.5]},
|
69
|
+
p([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]),
|
70
|
+
p(
|
71
|
+
[
|
72
|
+
[
|
73
|
+
[0.8542037, 1.0125432, 0.8542037],
|
74
|
+
[1.1487541, 1.3616928, 1.1487541],
|
75
|
+
[1.1070318, 1.3122368, 1.1070318],
|
76
|
+
],
|
77
|
+
[
|
78
|
+
[2.3251305, 2.756128, 2.3251305],
|
79
|
+
[2.8718853, 3.4042323, 2.8718853],
|
80
|
+
[2.5779586, 3.0558217, 2.5779586],
|
81
|
+
],
|
82
|
+
]
|
83
|
+
),
|
84
|
+
]
|
85
|
+
)
|
86
|
+
|
87
|
+
|
88
|
+
class TestGaussianSmooth(unittest.TestCase):
|
89
|
+
@parameterized.expand(TESTS)
|
90
|
+
def test_value(self, arguments, image, expected_data):
|
91
|
+
result = GaussianSmooth(**arguments)(image)
|
92
|
+
assert_allclose(result, expected_data, atol=1e-4, rtol=1e-4, type_test="tensor")
|
93
|
+
|
94
|
+
|
95
|
+
if __name__ == "__main__":
|
96
|
+
unittest.main()
|
@@ -0,0 +1,96 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.transforms import GaussianSmoothd
|
20
|
+
from tests.test_utils import TEST_NDARRAYS, assert_allclose
|
21
|
+
|
22
|
+
TESTS = []
|
23
|
+
for p in TEST_NDARRAYS:
|
24
|
+
TESTS.append(
|
25
|
+
[
|
26
|
+
{"keys": "img", "sigma": 1.5},
|
27
|
+
{"img": p(np.array([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]))},
|
28
|
+
np.array(
|
29
|
+
[
|
30
|
+
[
|
31
|
+
[0.59167546, 0.69312394, 0.59167546],
|
32
|
+
[0.7956997, 0.93213004, 0.7956997],
|
33
|
+
[0.7668002, 0.8982755, 0.7668002],
|
34
|
+
],
|
35
|
+
[
|
36
|
+
[1.6105323, 1.8866735, 1.6105323],
|
37
|
+
[1.9892492, 2.3303251, 1.9892492],
|
38
|
+
[1.7856569, 2.091825, 1.7856569],
|
39
|
+
],
|
40
|
+
]
|
41
|
+
),
|
42
|
+
]
|
43
|
+
)
|
44
|
+
|
45
|
+
TESTS.append(
|
46
|
+
[
|
47
|
+
{"keys": "img", "sigma": 0.5},
|
48
|
+
{"img": p(np.array([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]))},
|
49
|
+
np.array(
|
50
|
+
[
|
51
|
+
[
|
52
|
+
[0.8424794, 0.99864554, 0.8424794],
|
53
|
+
[1.678146, 1.9892154, 1.678146],
|
54
|
+
[1.9889624, 2.3576462, 1.9889624],
|
55
|
+
],
|
56
|
+
[
|
57
|
+
[2.966061, 3.5158648, 2.966061],
|
58
|
+
[4.1953645, 4.973038, 4.1953645],
|
59
|
+
[4.112544, 4.8748655, 4.1125436],
|
60
|
+
],
|
61
|
+
]
|
62
|
+
),
|
63
|
+
]
|
64
|
+
)
|
65
|
+
|
66
|
+
TESTS.append(
|
67
|
+
[
|
68
|
+
{"keys": "img", "sigma": [1.5, 0.5]},
|
69
|
+
{"img": p(np.array([[[1, 1, 1], [2, 2, 2], [3, 3, 3]], [[4, 4, 4], [5, 5, 5], [6, 6, 6]]]))},
|
70
|
+
np.array(
|
71
|
+
[
|
72
|
+
[
|
73
|
+
[0.8542037, 1.0125432, 0.8542037],
|
74
|
+
[1.1487541, 1.3616928, 1.1487541],
|
75
|
+
[1.1070318, 1.3122368, 1.1070318],
|
76
|
+
],
|
77
|
+
[
|
78
|
+
[2.3251305, 2.756128, 2.3251305],
|
79
|
+
[2.8718853, 3.4042323, 2.8718853],
|
80
|
+
[2.5779586, 3.0558217, 2.5779586],
|
81
|
+
],
|
82
|
+
]
|
83
|
+
),
|
84
|
+
]
|
85
|
+
)
|
86
|
+
|
87
|
+
|
88
|
+
class TestGaussianSmoothd(unittest.TestCase):
|
89
|
+
@parameterized.expand(TESTS)
|
90
|
+
def test_value(self, arguments, image, expected_data):
|
91
|
+
result = GaussianSmoothd(**arguments)(image)
|
92
|
+
assert_allclose(result["img"], expected_data, rtol=1e-4, type_test="tensor")
|
93
|
+
|
94
|
+
|
95
|
+
if __name__ == "__main__":
|
96
|
+
unittest.main()
|