monai-weekly 1.5.dev2505__py3-none-any.whl → 1.5.dev2507__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/meta_tensor.py +5 -0
- monai/data/utils.py +6 -13
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utils.py +1 -2
- monai/utils/jupyter_utils.py +1 -1
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- monai/visualize/img2tensorboard.py +2 -2
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/METADATA +2 -2
- monai_weekly-1.5.dev2507.dist-info/RECORD +1181 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1310 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +824 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
- tests/networks/nets/test_globalnet.py +103 -0
- tests/networks/nets/test_highresnet.py +67 -0
- tests/networks/nets/test_hovernet.py +218 -0
- tests/networks/nets/test_mednext.py +122 -0
- tests/networks/nets/test_milmodel.py +92 -0
- tests/networks/nets/test_net_adapter.py +68 -0
- tests/networks/nets/test_network_consistency.py +86 -0
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- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2505.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2505.dist-info → monai_weekly-1.5.dev2507.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import torch
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from parameterized import parameterized
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from monai.networks import eval_mode
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from monai.networks.layers import Act
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from monai.networks.nets import AutoEncoder
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from tests.test_utils import test_script_save
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device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
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TEST_CASE_0 = [ # single channel 2D, batch 4, no residual
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{
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"spatial_dims": 2,
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"in_channels": 1,
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"out_channels": 1,
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"channels": (4, 8, 16),
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"strides": (2, 2, 2),
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"num_res_units": 0,
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},
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(1, 1, 128, 128),
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(1, 1, 128, 128),
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]
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TEST_CASE_1 = [ # single channel 2D, batch 4
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{"spatial_dims": 2, "in_channels": 1, "out_channels": 1, "channels": (4, 8, 16), "strides": (2, 2, 2)},
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(1, 1, 128, 128),
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(1, 1, 128, 128),
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]
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TEST_CASE_2 = [ # 3-channel 2D, batch 4, LeakyReLU activation
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{
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"spatial_dims": 2,
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"in_channels": 3,
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"out_channels": 3,
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"channels": (4, 8, 16),
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"strides": (2, 2, 2),
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"act": (Act.LEAKYRELU, {"negative_slope": 0.2}),
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},
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(1, 3, 128, 128),
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(1, 3, 128, 128),
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]
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TEST_CASE_3 = [ # 4-channel 3D, batch 4
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{"spatial_dims": 3, "in_channels": 4, "out_channels": 3, "channels": (4, 8, 16), "strides": (2, 2, 2)},
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(1, 4, 128, 128, 128),
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(1, 3, 128, 128, 128),
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]
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CASES = [TEST_CASE_0, TEST_CASE_1, TEST_CASE_2, TEST_CASE_3]
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TEST_CASE_FAIL = { # 2-channel 2D, should fail because of stride/channel mismatch.
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"spatial_dims": 2,
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"in_channels": 2,
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"out_channels": 2,
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"channels": (4, 8, 16),
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"strides": (2, 2),
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}
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class TestAutoEncoder(unittest.TestCase):
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@parameterized.expand(CASES)
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def test_shape(self, input_param, input_shape, expected_shape):
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net = AutoEncoder(**input_param).to(device)
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with eval_mode(net):
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result = net.forward(torch.randn(input_shape).to(device))
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self.assertEqual(result.shape, expected_shape)
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def test_script(self):
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net = AutoEncoder(spatial_dims=2, in_channels=1, out_channels=1, channels=(4, 8), strides=(2, 2))
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test_data = torch.randn(2, 1, 32, 32)
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test_script_save(net, test_data)
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def test_channel_stride_difference(self):
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with self.assertRaises(ValueError):
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AutoEncoder(**TEST_CASE_FAIL)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import os
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import tempfile
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import unittest
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from unittest import skipUnless
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import torch
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from parameterized import parameterized
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from monai.apps import download_url
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from monai.networks import eval_mode
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from monai.networks.nets import AutoencoderKL
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from monai.utils import optional_import
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from tests.test_utils import SkipIfBeforePyTorchVersion, skip_if_downloading_fails, testing_data_config
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tqdm, has_tqdm = optional_import("tqdm", name="tqdm")
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_, has_einops = optional_import("einops")
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device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
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CASES_NO_ATTENTION = [
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[
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{
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"spatial_dims": 2,
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"in_channels": 1,
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"out_channels": 1,
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"channels": (4, 4, 4),
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"latent_channels": 4,
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"attention_levels": (False, False, False),
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"num_res_blocks": 1,
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"norm_num_groups": 4,
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"with_encoder_nonlocal_attn": False,
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"with_decoder_nonlocal_attn": False,
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},
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(1, 1, 16, 16),
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(1, 1, 16, 16),
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(1, 4, 4, 4),
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],
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[
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"spatial_dims": 3,
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"in_channels": 1,
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"out_channels": 1,
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"channels": (4, 4, 4),
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"latent_channels": 4,
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"attention_levels": (False, False, False),
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"num_res_blocks": 1,
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"norm_num_groups": 4,
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"with_encoder_nonlocal_attn": False,
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"with_decoder_nonlocal_attn": False,
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},
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],
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]
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CASES_ATTENTION = [
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[
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"spatial_dims": 2,
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"in_channels": 1,
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"out_channels": 1,
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"channels": (4, 4, 4),
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"latent_channels": 4,
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"attention_levels": (False, False, False),
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"num_res_blocks": 1,
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"norm_num_groups": 4,
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"channels": (4, 4, 4),
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"latent_channels": 4,
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"attention_levels": (False, False, False),
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"num_res_blocks": (1, 1, 2),
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},
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],
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]
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if has_einops:
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CASES = CASES_NO_ATTENTION + CASES_ATTENTION
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else:
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CASES = CASES_NO_ATTENTION
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class TestAutoEncoderKL(unittest.TestCase):
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@parameterized.expand(CASES)
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def test_shape(self, input_param, input_shape, expected_shape, expected_latent_shape):
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net = AutoencoderKL(**input_param).to(device)
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with eval_mode(net):
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result = net.forward(torch.randn(input_shape).to(device))
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self.assertEqual(result[0].shape, expected_shape)
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self.assertEqual(result[1].shape, expected_latent_shape)
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self.assertEqual(result[2].shape, expected_latent_shape)
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@parameterized.expand(CASES)
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@SkipIfBeforePyTorchVersion((1, 11))
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def test_shape_with_convtranspose_and_checkpointing(
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self, input_param, input_shape, expected_shape, expected_latent_shape
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):
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input_param = input_param.copy()
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input_param.update({"use_checkpoint": True, "use_convtranspose": True})
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net = AutoencoderKL(**input_param).to(device)
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with eval_mode(net):
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result = net.forward(torch.randn(input_shape).to(device))
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self.assertEqual(result[0].shape, expected_shape)
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self.assertEqual(result[1].shape, expected_latent_shape)
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self.assertEqual(result[2].shape, expected_latent_shape)
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def test_model_channels_not_multiple_of_norm_num_group(self):
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with self.assertRaises(ValueError):
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AutoencoderKL(
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spatial_dims=2,
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in_channels=1,
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out_channels=1,
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channels=(24, 24, 24),
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attention_levels=(False, False, False),
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latent_channels=8,
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num_res_blocks=1,
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norm_num_groups=16,
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)
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def test_model_num_channels_not_same_size_of_attention_levels(self):
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with self.assertRaises(ValueError):
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AutoencoderKL(
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spatial_dims=2,
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in_channels=1,
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out_channels=1,
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channels=(24, 24, 24),
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attention_levels=(False, False),
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latent_channels=8,
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num_res_blocks=1,
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norm_num_groups=16,
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)
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def test_model_num_channels_not_same_size_of_num_res_blocks(self):
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with self.assertRaises(ValueError):
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AutoencoderKL(
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spatial_dims=2,
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in_channels=1,
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out_channels=1,
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channels=(24, 24, 24),
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attention_levels=(False, False, False),
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latent_channels=8,
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num_res_blocks=(8, 8),
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norm_num_groups=16,
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)
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def test_shape_reconstruction(self):
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input_param, input_shape, expected_shape, _ = CASES[0]
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net = AutoencoderKL(**input_param).to(device)
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with eval_mode(net):
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result = net.reconstruct(torch.randn(input_shape).to(device))
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self.assertEqual(result.shape, expected_shape)
|
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+
|
241
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+
@SkipIfBeforePyTorchVersion((1, 11))
|
242
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+
def test_shape_reconstruction_with_convtranspose_and_checkpointing(self):
|
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+
input_param, input_shape, expected_shape, _ = CASES[0]
|
244
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+
input_param = input_param.copy()
|
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+
input_param.update({"use_checkpoint": True, "use_convtranspose": True})
|
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|
+
net = AutoencoderKL(**input_param).to(device)
|
247
|
+
with eval_mode(net):
|
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|
+
result = net.reconstruct(torch.randn(input_shape).to(device))
|
249
|
+
self.assertEqual(result.shape, expected_shape)
|
250
|
+
|
251
|
+
def test_shape_encode(self):
|
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+
input_param, input_shape, _, expected_latent_shape = CASES[0]
|
253
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+
net = AutoencoderKL(**input_param).to(device)
|
254
|
+
with eval_mode(net):
|
255
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+
result = net.encode(torch.randn(input_shape).to(device))
|
256
|
+
self.assertEqual(result[0].shape, expected_latent_shape)
|
257
|
+
self.assertEqual(result[1].shape, expected_latent_shape)
|
258
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+
|
259
|
+
@SkipIfBeforePyTorchVersion((1, 11))
|
260
|
+
def test_shape_encode_with_convtranspose_and_checkpointing(self):
|
261
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+
input_param, input_shape, _, expected_latent_shape = CASES[0]
|
262
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+
input_param = input_param.copy()
|
263
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+
input_param.update({"use_checkpoint": True, "use_convtranspose": True})
|
264
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+
net = AutoencoderKL(**input_param).to(device)
|
265
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+
with eval_mode(net):
|
266
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+
result = net.encode(torch.randn(input_shape).to(device))
|
267
|
+
self.assertEqual(result[0].shape, expected_latent_shape)
|
268
|
+
self.assertEqual(result[1].shape, expected_latent_shape)
|
269
|
+
|
270
|
+
def test_shape_sampling(self):
|
271
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+
input_param, _, _, expected_latent_shape = CASES[0]
|
272
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+
net = AutoencoderKL(**input_param).to(device)
|
273
|
+
with eval_mode(net):
|
274
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+
result = net.sampling(
|
275
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+
torch.randn(expected_latent_shape).to(device), torch.randn(expected_latent_shape).to(device)
|
276
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+
)
|
277
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+
self.assertEqual(result.shape, expected_latent_shape)
|
278
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+
|
279
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+
@SkipIfBeforePyTorchVersion((1, 11))
|
280
|
+
def test_shape_sampling_convtranspose_and_checkpointing(self):
|
281
|
+
input_param, _, _, expected_latent_shape = CASES[0]
|
282
|
+
input_param = input_param.copy()
|
283
|
+
input_param.update({"use_checkpoint": True, "use_convtranspose": True})
|
284
|
+
net = AutoencoderKL(**input_param).to(device)
|
285
|
+
with eval_mode(net):
|
286
|
+
result = net.sampling(
|
287
|
+
torch.randn(expected_latent_shape).to(device), torch.randn(expected_latent_shape).to(device)
|
288
|
+
)
|
289
|
+
self.assertEqual(result.shape, expected_latent_shape)
|
290
|
+
|
291
|
+
def test_shape_decode(self):
|
292
|
+
input_param, expected_input_shape, _, latent_shape = CASES[0]
|
293
|
+
net = AutoencoderKL(**input_param).to(device)
|
294
|
+
with eval_mode(net):
|
295
|
+
result = net.decode(torch.randn(latent_shape).to(device))
|
296
|
+
self.assertEqual(result.shape, expected_input_shape)
|
297
|
+
|
298
|
+
@SkipIfBeforePyTorchVersion((1, 11))
|
299
|
+
def test_shape_decode_convtranspose_and_checkpointing(self):
|
300
|
+
input_param, expected_input_shape, _, latent_shape = CASES[0]
|
301
|
+
input_param = input_param.copy()
|
302
|
+
input_param.update({"use_checkpoint": True, "use_convtranspose": True})
|
303
|
+
net = AutoencoderKL(**input_param).to(device)
|
304
|
+
with eval_mode(net):
|
305
|
+
result = net.decode(torch.randn(latent_shape).to(device))
|
306
|
+
self.assertEqual(result.shape, expected_input_shape)
|
307
|
+
|
308
|
+
@skipUnless(has_einops, "Requires einops")
|
309
|
+
def test_compatibility_with_monai_generative(self):
|
310
|
+
# test loading weights from a model saved in MONAI Generative, version 0.2.3
|
311
|
+
with skip_if_downloading_fails():
|
312
|
+
net = AutoencoderKL(
|
313
|
+
spatial_dims=2,
|
314
|
+
in_channels=1,
|
315
|
+
out_channels=1,
|
316
|
+
channels=(4, 4, 4),
|
317
|
+
latent_channels=4,
|
318
|
+
attention_levels=(False, False, True),
|
319
|
+
num_res_blocks=1,
|
320
|
+
norm_num_groups=4,
|
321
|
+
).to(device)
|
322
|
+
|
323
|
+
tmpdir = tempfile.mkdtemp()
|
324
|
+
key = "autoencoderkl_monai_generative_weights"
|
325
|
+
url = testing_data_config("models", key, "url")
|
326
|
+
hash_type = testing_data_config("models", key, "hash_type")
|
327
|
+
hash_val = testing_data_config("models", key, "hash_val")
|
328
|
+
filename = "autoencoderkl_monai_generative_weights.pt"
|
329
|
+
|
330
|
+
weight_path = os.path.join(tmpdir, filename)
|
331
|
+
download_url(url=url, filepath=weight_path, hash_val=hash_val, hash_type=hash_type)
|
332
|
+
|
333
|
+
net.load_old_state_dict(torch.load(weight_path), verbose=False)
|
334
|
+
|
335
|
+
|
336
|
+
if __name__ == "__main__":
|
337
|
+
unittest.main()
|
@@ -0,0 +1,102 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.networks import eval_mode
|
20
|
+
from monai.networks.nets import BasicUNet
|
21
|
+
from tests.test_utils import test_script_save
|
22
|
+
|
23
|
+
CASES_1D = []
|
24
|
+
for mode in ["pixelshuffle", "nontrainable", "deconv", None]:
|
25
|
+
kwargs = {"spatial_dims": 1, "in_channels": 5, "out_channels": 8}
|
26
|
+
if mode is not None:
|
27
|
+
kwargs["upsample"] = mode # type: ignore
|
28
|
+
CASES_1D.append([kwargs, (10, 5, 33), (10, 8, 33)])
|
29
|
+
|
30
|
+
CASES_2D = []
|
31
|
+
for mode in ["pixelshuffle", "nontrainable", "deconv"]:
|
32
|
+
for d1 in range(33, 64, 14):
|
33
|
+
for d2 in range(63, 33, -21):
|
34
|
+
in_channels, out_channels = 2, 3
|
35
|
+
CASES_2D.append(
|
36
|
+
[
|
37
|
+
{
|
38
|
+
"spatial_dims": 2,
|
39
|
+
"in_channels": in_channels,
|
40
|
+
"out_channels": out_channels,
|
41
|
+
"features": (12, 12, 13, 14, 15, 16),
|
42
|
+
"upsample": mode,
|
43
|
+
},
|
44
|
+
(2, in_channels, d1, d2),
|
45
|
+
(2, out_channels, d1, d2),
|
46
|
+
]
|
47
|
+
)
|
48
|
+
CASES_3D = [
|
49
|
+
[ # single channel 3D, batch 2
|
50
|
+
{
|
51
|
+
"spatial_dims": 3,
|
52
|
+
"in_channels": 1,
|
53
|
+
"out_channels": 2,
|
54
|
+
"features": (16, 20, 21, 22, 23, 11),
|
55
|
+
"upsample": "pixelshuffle",
|
56
|
+
},
|
57
|
+
(2, 1, 33, 34, 35),
|
58
|
+
(2, 2, 33, 34, 35),
|
59
|
+
],
|
60
|
+
[ # 2-channel 3D, batch 3
|
61
|
+
{
|
62
|
+
"spatial_dims": 3,
|
63
|
+
"in_channels": 2,
|
64
|
+
"out_channels": 7,
|
65
|
+
"features": (14, 15, 16, 17, 18, 11),
|
66
|
+
"upsample": "deconv",
|
67
|
+
},
|
68
|
+
(3, 2, 33, 37, 34),
|
69
|
+
(3, 7, 33, 37, 34),
|
70
|
+
],
|
71
|
+
[ # 4-channel 3D, batch 5
|
72
|
+
{
|
73
|
+
"spatial_dims": 3,
|
74
|
+
"in_channels": 4,
|
75
|
+
"out_channels": 2,
|
76
|
+
"features": (14, 15, 16, 17, 18, 10),
|
77
|
+
"upsample": "nontrainable",
|
78
|
+
},
|
79
|
+
(5, 4, 34, 35, 37),
|
80
|
+
(5, 2, 34, 35, 37),
|
81
|
+
],
|
82
|
+
]
|
83
|
+
|
84
|
+
|
85
|
+
class TestBasicUNET(unittest.TestCase):
|
86
|
+
@parameterized.expand(CASES_1D + CASES_2D + CASES_3D)
|
87
|
+
def test_shape(self, input_param, input_shape, expected_shape):
|
88
|
+
device = "cuda" if torch.cuda.is_available() else "cpu"
|
89
|
+
print(input_param)
|
90
|
+
net = BasicUNet(**input_param).to(device)
|
91
|
+
with eval_mode(net):
|
92
|
+
result = net(torch.randn(input_shape).to(device))
|
93
|
+
self.assertEqual(result.shape, expected_shape)
|
94
|
+
|
95
|
+
def test_script(self):
|
96
|
+
net = BasicUNet(spatial_dims=2, in_channels=1, out_channels=3)
|
97
|
+
test_data = torch.randn(16, 1, 32, 32)
|
98
|
+
test_script_save(net, test_data)
|
99
|
+
|
100
|
+
|
101
|
+
if __name__ == "__main__":
|
102
|
+
unittest.main()
|
@@ -0,0 +1,109 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.networks import eval_mode
|
20
|
+
from monai.networks.nets import BasicUNetPlusPlus
|
21
|
+
from tests.test_utils import test_script_save
|
22
|
+
|
23
|
+
CASES_1D = []
|
24
|
+
for mode in ["pixelshuffle", "nontrainable", "deconv", None]:
|
25
|
+
kwargs = {"spatial_dims": 1, "in_channels": 5, "out_channels": 8}
|
26
|
+
if mode is not None:
|
27
|
+
kwargs["upsample"] = mode # type: ignore
|
28
|
+
CASES_1D.append([kwargs, (10, 5, 33), (10, 8, 33)])
|
29
|
+
|
30
|
+
CASES_2D = []
|
31
|
+
for mode in ["pixelshuffle", "nontrainable", "deconv"]:
|
32
|
+
for d1 in range(33, 64, 14):
|
33
|
+
for d2 in range(63, 33, -21):
|
34
|
+
in_channels, out_channels = 2, 3
|
35
|
+
CASES_2D.append(
|
36
|
+
[
|
37
|
+
{
|
38
|
+
"spatial_dims": 2,
|
39
|
+
"in_channels": in_channels,
|
40
|
+
"out_channels": out_channels,
|
41
|
+
"features": (12, 12, 13, 14, 15, 16),
|
42
|
+
"upsample": mode,
|
43
|
+
},
|
44
|
+
(2, in_channels, d1, d2),
|
45
|
+
(2, out_channels, d1, d2),
|
46
|
+
]
|
47
|
+
)
|
48
|
+
CASES_3D = [
|
49
|
+
[ # single channel 3D, batch 2
|
50
|
+
{
|
51
|
+
"spatial_dims": 3,
|
52
|
+
"in_channels": 1,
|
53
|
+
"out_channels": 2,
|
54
|
+
"features": (16, 20, 21, 22, 23, 11),
|
55
|
+
"upsample": "pixelshuffle",
|
56
|
+
},
|
57
|
+
(2, 1, 33, 34, 35),
|
58
|
+
(2, 2, 33, 34, 35),
|
59
|
+
],
|
60
|
+
[ # 2-channel 3D, batch 3
|
61
|
+
{
|
62
|
+
"spatial_dims": 3,
|
63
|
+
"in_channels": 2,
|
64
|
+
"out_channels": 7,
|
65
|
+
"features": (14, 15, 16, 17, 18, 11),
|
66
|
+
"upsample": "deconv",
|
67
|
+
},
|
68
|
+
(3, 2, 33, 37, 34),
|
69
|
+
(3, 7, 33, 37, 34),
|
70
|
+
],
|
71
|
+
[ # 4-channel 3D, batch 5
|
72
|
+
{
|
73
|
+
"spatial_dims": 3,
|
74
|
+
"in_channels": 4,
|
75
|
+
"out_channels": 2,
|
76
|
+
"features": (14, 15, 16, 17, 18, 10),
|
77
|
+
"upsample": "nontrainable",
|
78
|
+
},
|
79
|
+
(5, 4, 34, 35, 37),
|
80
|
+
(5, 2, 34, 35, 37),
|
81
|
+
],
|
82
|
+
]
|
83
|
+
|
84
|
+
|
85
|
+
class TestBasicUNETPlusPlus(unittest.TestCase):
|
86
|
+
@parameterized.expand(CASES_1D + CASES_2D + CASES_3D)
|
87
|
+
def test_shape(self, input_param, input_shape, expected_shape):
|
88
|
+
device = "cuda" if torch.cuda.is_available() else "cpu"
|
89
|
+
print(input_param)
|
90
|
+
net = BasicUNetPlusPlus(**input_param).to(device)
|
91
|
+
with eval_mode(net):
|
92
|
+
result = net(torch.randn(input_shape).to(device))
|
93
|
+
self.assertEqual(result[0].shape, expected_shape)
|
94
|
+
|
95
|
+
def test_deep_supervision_shape(self):
|
96
|
+
net = BasicUNetPlusPlus(spatial_dims=2, deep_supervision=True, in_channels=3, out_channels=3)
|
97
|
+
test_data = torch.randn(16, 3, 32, 32)
|
98
|
+
with eval_mode(net):
|
99
|
+
result = net(test_data)
|
100
|
+
self.assertEqual(result[0].shape, test_data.shape)
|
101
|
+
|
102
|
+
def test_script(self):
|
103
|
+
net = BasicUNetPlusPlus(spatial_dims=2, deep_supervision=True, in_channels=1, out_channels=3)
|
104
|
+
test_data = torch.randn(16, 1, 32, 32)
|
105
|
+
test_script_save(net, test_data)
|
106
|
+
|
107
|
+
|
108
|
+
if __name__ == "__main__":
|
109
|
+
unittest.main()
|
@@ -0,0 +1,55 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import os
|
15
|
+
import tempfile
|
16
|
+
import unittest
|
17
|
+
|
18
|
+
import torch
|
19
|
+
|
20
|
+
from monai.networks.nets import UNet
|
21
|
+
from tests.test_utils import command_line_tests, skip_if_windows
|
22
|
+
|
23
|
+
|
24
|
+
@skip_if_windows
|
25
|
+
class TestBundleInit(unittest.TestCase):
|
26
|
+
def test_bundle(self):
|
27
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
28
|
+
net = UNet(2, 1, 1, [4, 8], [2])
|
29
|
+
torch.save(net.state_dict(), tempdir + "/test.pt")
|
30
|
+
|
31
|
+
bundle_root = tempdir + "/test_bundle"
|
32
|
+
|
33
|
+
cmd = [
|
34
|
+
"coverage",
|
35
|
+
"run",
|
36
|
+
"-m",
|
37
|
+
"monai.bundle",
|
38
|
+
"init_bundle",
|
39
|
+
bundle_root,
|
40
|
+
tempdir + "/test.pt",
|
41
|
+
"--dataset_license",
|
42
|
+
"True",
|
43
|
+
]
|
44
|
+
command_line_tests(cmd)
|
45
|
+
|
46
|
+
self.assertTrue(os.path.exists(bundle_root + "/configs/metadata.json"))
|
47
|
+
self.assertTrue(os.path.exists(bundle_root + "/configs/inference.json"))
|
48
|
+
self.assertTrue(os.path.exists(bundle_root + "/models/model.pt"))
|
49
|
+
self.assertTrue(os.path.exists(bundle_root + "/LICENSE"))
|
50
|
+
self.assertTrue(os.path.exists(bundle_root + "/docs/README.md"))
|
51
|
+
self.assertTrue(os.path.exists(bundle_root + "/docs/data_license.txt"))
|
52
|
+
|
53
|
+
|
54
|
+
if __name__ == "__main__":
|
55
|
+
unittest.main()
|