melage 0.0.65__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (501) hide show
  1. melage/__init__.py +16 -0
  2. melage/cli.py +4 -0
  3. melage/graphics/GLGraphicsItem.py +286 -0
  4. melage/graphics/GLViewWidget.py +595 -0
  5. melage/graphics/Transform3D.py +55 -0
  6. melage/graphics/__init__.py +8 -0
  7. melage/graphics/functions.py +101 -0
  8. melage/graphics/items/GLAxisItem.py +149 -0
  9. melage/graphics/items/GLGridItem.py +178 -0
  10. melage/graphics/items/GLPolygonItem.py +77 -0
  11. melage/graphics/items/GLScatterPlotItem.py +135 -0
  12. melage/graphics/items/GLVolumeItem.py +280 -0
  13. melage/graphics/items/GLVolumeItem_b.py +237 -0
  14. melage/graphics/items/__init__.py +0 -0
  15. melage/graphics/shaders.py +202 -0
  16. melage/main.py +270 -0
  17. melage/requirements22.txt +25 -0
  18. melage/requirements_old.txt +28 -0
  19. melage/resource/0circle.png +0 -0
  20. melage/resource/0circle_faded.png +0 -0
  21. melage/resource/3d.png +0 -0
  22. melage/resource/3d.psd +0 -0
  23. melage/resource/3dFaded.png +0 -0
  24. melage/resource/Eraser.png +0 -0
  25. melage/resource/EraserFaded.png +0 -0
  26. melage/resource/EraserX.png +0 -0
  27. melage/resource/EraserXFaded.png +0 -0
  28. melage/resource/Eraser_icon.svg +79 -0
  29. melage/resource/Hand.png +0 -0
  30. melage/resource/HandIcons_0.png +0 -0
  31. melage/resource/Hand_IX.png +0 -0
  32. melage/resource/Hand_IXFaded.png +0 -0
  33. melage/resource/Handsqueezed.png +0 -0
  34. melage/resource/Handwriting (copy).png +0 -0
  35. melage/resource/Handwriting.png +0 -0
  36. melage/resource/HandwritingMinus.png +0 -0
  37. melage/resource/HandwritingMinusX.png +0 -0
  38. melage/resource/HandwritingPlus.png +0 -0
  39. melage/resource/HandwritingPlusX.png +0 -0
  40. melage/resource/Move_icon.svg +8 -0
  41. melage/resource/PngItem_2422924.png +0 -0
  42. melage/resource/about.png +0 -0
  43. melage/resource/about_logo.png +0 -0
  44. melage/resource/about_logo0.png +0 -0
  45. melage/resource/action_check.png +0 -0
  46. melage/resource/action_check_OFF.png +0 -0
  47. melage/resource/arrow).png +0 -0
  48. melage/resource/arrow.png +0 -0
  49. melage/resource/arrowFaded.png +0 -0
  50. melage/resource/arrow_org.png +0 -0
  51. melage/resource/arrow_org.png.png +0 -0
  52. melage/resource/arrows.png +0 -0
  53. melage/resource/authors.mp4 +0 -0
  54. melage/resource/box.png +0 -0
  55. melage/resource/check-image-icon-0.jpg +0 -0
  56. melage/resource/circle.png +0 -0
  57. melage/resource/circle_faded.png +0 -0
  58. melage/resource/circle_or.png +0 -0
  59. melage/resource/close.png +0 -0
  60. melage/resource/close_bg.png +0 -0
  61. melage/resource/color/Simple.txt +18 -0
  62. melage/resource/color/Tissue.txt +24 -0
  63. melage/resource/color/Tissue12.txt +27 -0
  64. melage/resource/color/albert_LUT.txt +102 -0
  65. melage/resource/color/mcrib_LUT.txt +102 -0
  66. melage/resource/color/pediatric1.txt +29 -0
  67. melage/resource/color/pediatric1_old.txt +27 -0
  68. melage/resource/color/pediatric2.txt +87 -0
  69. melage/resource/color/pediatric3.txt +29 -0
  70. melage/resource/color/pediatrics (copy).csv +103 -0
  71. melage/resource/color/tissue_seg.txt +4 -0
  72. melage/resource/contour.png +0 -0
  73. melage/resource/contour.svg +2 -0
  74. melage/resource/contourFaded.png +0 -0
  75. melage/resource/contourX.png +0 -0
  76. melage/resource/contourXFaded.png +0 -0
  77. melage/resource/dti.png +0 -0
  78. melage/resource/dti0.png +0 -0
  79. melage/resource/dti222.png +0 -0
  80. melage/resource/dti_or.png +0 -0
  81. melage/resource/eco.png +0 -0
  82. melage/resource/eco22.png +0 -0
  83. melage/resource/eco_old.png +0 -0
  84. melage/resource/eco_or.png +0 -0
  85. melage/resource/eco_or2.png +0 -0
  86. melage/resource/eco_seg.png +0 -0
  87. melage/resource/eco_seg_old.png +0 -0
  88. melage/resource/export.png +0 -0
  89. melage/resource/hand-grab-icon-10.jpg +0 -0
  90. melage/resource/hand-grab-icon-25.jpg +0 -0
  91. melage/resource/info.png +0 -0
  92. melage/resource/line.png +0 -0
  93. melage/resource/linefaded.png +0 -0
  94. melage/resource/load.png +0 -0
  95. melage/resource/main.ico +0 -0
  96. melage/resource/manual_images/3D_rightc.png +0 -0
  97. melage/resource/manual_images/3D_rightc_goto.png +0 -0
  98. melage/resource/manual_images/3D_rightc_paint.png +0 -0
  99. melage/resource/manual_images/3D_rightc_paint_draw1.png +0 -0
  100. melage/resource/manual_images/3D_rightc_paint_draw2.png +0 -0
  101. melage/resource/manual_images/3D_rightc_paint_render.png +0 -0
  102. melage/resource/manual_images/3D_rightc_paint_render2.png +0 -0
  103. melage/resource/manual_images/3D_rightc_paint_render3.png +0 -0
  104. melage/resource/manual_images/3D_rightc_paint_render4.png +0 -0
  105. melage/resource/manual_images/3D_rightc_paint_render5.png +0 -0
  106. melage/resource/manual_images/3D_rightc_paint_render6.png +0 -0
  107. melage/resource/manual_images/3D_rightc_seg.png +0 -0
  108. melage/resource/manual_images/exit_toolbar.png +0 -0
  109. melage/resource/manual_images/load_image_file.png +0 -0
  110. melage/resource/manual_images/load_image_file_openp.png +0 -0
  111. melage/resource/manual_images/main_page.png +0 -0
  112. melage/resource/manual_images/menu_file.png +0 -0
  113. melage/resource/manual_images/menu_file_export.png +0 -0
  114. melage/resource/manual_images/menu_file_import.png +0 -0
  115. melage/resource/manual_images/menu_file_settings.png +0 -0
  116. melage/resource/manual_images/menu_file_ss.png +0 -0
  117. melage/resource/manual_images/open_save_load.png +0 -0
  118. melage/resource/manual_images/panning_toolbar.png +0 -0
  119. melage/resource/manual_images/segmentation_toolbar.png +0 -0
  120. melage/resource/manual_images/tab_mri.png +0 -0
  121. melage/resource/manual_images/tab_us.png +0 -0
  122. melage/resource/manual_images/tabs.png +0 -0
  123. melage/resource/manual_images/toolbar_tools.png +0 -0
  124. melage/resource/manual_images/tools_basic.png +0 -0
  125. melage/resource/manual_images/tools_bet.png +0 -0
  126. melage/resource/manual_images/tools_cs.png +0 -0
  127. melage/resource/manual_images/tools_deepbet.png +0 -0
  128. melage/resource/manual_images/tools_imageinfo.png +0 -0
  129. melage/resource/manual_images/tools_maskO.png +0 -0
  130. melage/resource/manual_images/tools_masking.png +0 -0
  131. melage/resource/manual_images/tools_n4b.png +0 -0
  132. melage/resource/manual_images/tools_resize.png +0 -0
  133. melage/resource/manual_images/tools_ruler.png +0 -0
  134. melage/resource/manual_images/tools_seg.png +0 -0
  135. melage/resource/manual_images/tools_threshold.png +0 -0
  136. melage/resource/manual_images/tools_tools.png +0 -0
  137. melage/resource/manual_images/widget_color.png +0 -0
  138. melage/resource/manual_images/widget_color_add.png +0 -0
  139. melage/resource/manual_images/widget_color_add2.png +0 -0
  140. melage/resource/manual_images/widget_color_additional.png +0 -0
  141. melage/resource/manual_images/widget_images.png +0 -0
  142. melage/resource/manual_images/widget_images2.png +0 -0
  143. melage/resource/manual_images/widget_images3.png +0 -0
  144. melage/resource/manual_images/widget_marker.png +0 -0
  145. melage/resource/manual_images/widget_mri.png +0 -0
  146. melage/resource/manual_images/widget_mri2.png +0 -0
  147. melage/resource/manual_images/widget_segintensity.png +0 -0
  148. melage/resource/manual_images/widget_tab_mutualview.png +0 -0
  149. melage/resource/manual_images/widget_tab_mutualview2.png +0 -0
  150. melage/resource/manual_images/widget_table.png +0 -0
  151. melage/resource/manual_images/widget_table2.png +0 -0
  152. melage/resource/manual_images/widget_us.png +0 -0
  153. melage/resource/melage_top.ico +0 -0
  154. melage/resource/melage_top.png +0 -0
  155. melage/resource/melage_top0.png +0 -0
  156. melage/resource/melage_top1.png +0 -0
  157. melage/resource/melage_top4.png +0 -0
  158. melage/resource/mri (copy).png +0 -0
  159. melage/resource/mri.png +0 -0
  160. melage/resource/mri0.png +0 -0
  161. melage/resource/mri000.png +0 -0
  162. melage/resource/mri22.png +0 -0
  163. melage/resource/mri_big.png +0 -0
  164. melage/resource/mri_old.png +0 -0
  165. melage/resource/mri_seg.png +0 -0
  166. melage/resource/mri_seg_old.png +0 -0
  167. melage/resource/new.png +0 -0
  168. melage/resource/open.png +0 -0
  169. melage/resource/open2.png +0 -0
  170. melage/resource/pan.png +0 -0
  171. melage/resource/pencil.png +0 -0
  172. melage/resource/pencilFaded.png +0 -0
  173. melage/resource/points.png +0 -0
  174. melage/resource/pointsFaded.png +0 -0
  175. melage/resource/rotate.png +0 -0
  176. melage/resource/ruler.png +0 -0
  177. melage/resource/rulerFaded.png +0 -0
  178. melage/resource/s.png +0 -0
  179. melage/resource/s.psd +0 -0
  180. melage/resource/save.png +0 -0
  181. melage/resource/saveas.png +0 -0
  182. melage/resource/seg_mri.png +0 -0
  183. melage/resource/seg_mri2.png +0 -0
  184. melage/resource/settings.png +0 -0
  185. melage/resource/synch.png +0 -0
  186. melage/resource/synchFaded.png +0 -0
  187. melage/resource/theme/rc/.keep +1 -0
  188. melage/resource/theme/rc/arrow_down.png +0 -0
  189. melage/resource/theme/rc/arrow_down@2x.png +0 -0
  190. melage/resource/theme/rc/arrow_down_disabled.png +0 -0
  191. melage/resource/theme/rc/arrow_down_disabled@2x.png +0 -0
  192. melage/resource/theme/rc/arrow_down_focus.png +0 -0
  193. melage/resource/theme/rc/arrow_down_focus@2x.png +0 -0
  194. melage/resource/theme/rc/arrow_down_pressed.png +0 -0
  195. melage/resource/theme/rc/arrow_down_pressed@2x.png +0 -0
  196. melage/resource/theme/rc/arrow_left.png +0 -0
  197. melage/resource/theme/rc/arrow_left@2x.png +0 -0
  198. melage/resource/theme/rc/arrow_left_disabled.png +0 -0
  199. melage/resource/theme/rc/arrow_left_disabled@2x.png +0 -0
  200. melage/resource/theme/rc/arrow_left_focus.png +0 -0
  201. melage/resource/theme/rc/arrow_left_focus@2x.png +0 -0
  202. melage/resource/theme/rc/arrow_left_pressed.png +0 -0
  203. melage/resource/theme/rc/arrow_left_pressed@2x.png +0 -0
  204. melage/resource/theme/rc/arrow_right.png +0 -0
  205. melage/resource/theme/rc/arrow_right@2x.png +0 -0
  206. melage/resource/theme/rc/arrow_right_disabled.png +0 -0
  207. melage/resource/theme/rc/arrow_right_disabled@2x.png +0 -0
  208. melage/resource/theme/rc/arrow_right_focus.png +0 -0
  209. melage/resource/theme/rc/arrow_right_focus@2x.png +0 -0
  210. melage/resource/theme/rc/arrow_right_pressed.png +0 -0
  211. melage/resource/theme/rc/arrow_right_pressed@2x.png +0 -0
  212. melage/resource/theme/rc/arrow_up.png +0 -0
  213. melage/resource/theme/rc/arrow_up@2x.png +0 -0
  214. melage/resource/theme/rc/arrow_up_disabled.png +0 -0
  215. melage/resource/theme/rc/arrow_up_disabled@2x.png +0 -0
  216. melage/resource/theme/rc/arrow_up_focus.png +0 -0
  217. melage/resource/theme/rc/arrow_up_focus@2x.png +0 -0
  218. melage/resource/theme/rc/arrow_up_pressed.png +0 -0
  219. melage/resource/theme/rc/arrow_up_pressed@2x.png +0 -0
  220. melage/resource/theme/rc/base_icon.png +0 -0
  221. melage/resource/theme/rc/base_icon@2x.png +0 -0
  222. melage/resource/theme/rc/base_icon_disabled.png +0 -0
  223. melage/resource/theme/rc/base_icon_disabled@2x.png +0 -0
  224. melage/resource/theme/rc/base_icon_focus.png +0 -0
  225. melage/resource/theme/rc/base_icon_focus@2x.png +0 -0
  226. melage/resource/theme/rc/base_icon_pressed.png +0 -0
  227. melage/resource/theme/rc/base_icon_pressed@2x.png +0 -0
  228. melage/resource/theme/rc/branch_closed.png +0 -0
  229. melage/resource/theme/rc/branch_closed@2x.png +0 -0
  230. melage/resource/theme/rc/branch_closed_disabled.png +0 -0
  231. melage/resource/theme/rc/branch_closed_disabled@2x.png +0 -0
  232. melage/resource/theme/rc/branch_closed_focus.png +0 -0
  233. melage/resource/theme/rc/branch_closed_focus@2x.png +0 -0
  234. melage/resource/theme/rc/branch_closed_pressed.png +0 -0
  235. melage/resource/theme/rc/branch_closed_pressed@2x.png +0 -0
  236. melage/resource/theme/rc/branch_end.png +0 -0
  237. melage/resource/theme/rc/branch_end@2x.png +0 -0
  238. melage/resource/theme/rc/branch_end_disabled.png +0 -0
  239. melage/resource/theme/rc/branch_end_disabled@2x.png +0 -0
  240. melage/resource/theme/rc/branch_end_focus.png +0 -0
  241. melage/resource/theme/rc/branch_end_focus@2x.png +0 -0
  242. melage/resource/theme/rc/branch_end_pressed.png +0 -0
  243. melage/resource/theme/rc/branch_end_pressed@2x.png +0 -0
  244. melage/resource/theme/rc/branch_line.png +0 -0
  245. melage/resource/theme/rc/branch_line@2x.png +0 -0
  246. melage/resource/theme/rc/branch_line_disabled.png +0 -0
  247. melage/resource/theme/rc/branch_line_disabled@2x.png +0 -0
  248. melage/resource/theme/rc/branch_line_focus.png +0 -0
  249. melage/resource/theme/rc/branch_line_focus@2x.png +0 -0
  250. melage/resource/theme/rc/branch_line_pressed.png +0 -0
  251. melage/resource/theme/rc/branch_line_pressed@2x.png +0 -0
  252. melage/resource/theme/rc/branch_more.png +0 -0
  253. melage/resource/theme/rc/branch_more@2x.png +0 -0
  254. melage/resource/theme/rc/branch_more_disabled.png +0 -0
  255. melage/resource/theme/rc/branch_more_disabled@2x.png +0 -0
  256. melage/resource/theme/rc/branch_more_focus.png +0 -0
  257. melage/resource/theme/rc/branch_more_focus@2x.png +0 -0
  258. melage/resource/theme/rc/branch_more_pressed.png +0 -0
  259. melage/resource/theme/rc/branch_more_pressed@2x.png +0 -0
  260. melage/resource/theme/rc/branch_open.png +0 -0
  261. melage/resource/theme/rc/branch_open@2x.png +0 -0
  262. melage/resource/theme/rc/branch_open_disabled.png +0 -0
  263. melage/resource/theme/rc/branch_open_disabled@2x.png +0 -0
  264. melage/resource/theme/rc/branch_open_focus.png +0 -0
  265. melage/resource/theme/rc/branch_open_focus@2x.png +0 -0
  266. melage/resource/theme/rc/branch_open_pressed.png +0 -0
  267. melage/resource/theme/rc/branch_open_pressed@2x.png +0 -0
  268. melage/resource/theme/rc/checkbox_checked.png +0 -0
  269. melage/resource/theme/rc/checkbox_checked0.png +0 -0
  270. melage/resource/theme/rc/checkbox_checked@2x.png +0 -0
  271. melage/resource/theme/rc/checkbox_checked@2x0.png +0 -0
  272. melage/resource/theme/rc/checkbox_checked@2x000.png.png +0 -0
  273. melage/resource/theme/rc/checkbox_checked_disabled.png +0 -0
  274. melage/resource/theme/rc/checkbox_checked_disabled0.png +0 -0
  275. melage/resource/theme/rc/checkbox_checked_disabled@2x.png +0 -0
  276. melage/resource/theme/rc/checkbox_checked_disabled@2x0.png +0 -0
  277. melage/resource/theme/rc/checkbox_checked_focus.png +0 -0
  278. melage/resource/theme/rc/checkbox_checked_focus0.png +0 -0
  279. melage/resource/theme/rc/checkbox_checked_focus@2x.png +0 -0
  280. melage/resource/theme/rc/checkbox_checked_focus@2x0.png +0 -0
  281. melage/resource/theme/rc/checkbox_checked_pressed.png +0 -0
  282. melage/resource/theme/rc/checkbox_checked_pressed0.png +0 -0
  283. melage/resource/theme/rc/checkbox_checked_pressed@2x.png +0 -0
  284. melage/resource/theme/rc/checkbox_checked_pressed@2x0.png +0 -0
  285. melage/resource/theme/rc/checkbox_indeterminate.png +0 -0
  286. melage/resource/theme/rc/checkbox_indeterminate@2x.png +0 -0
  287. melage/resource/theme/rc/checkbox_indeterminate_disabled.png +0 -0
  288. melage/resource/theme/rc/checkbox_indeterminate_disabled@2x.png +0 -0
  289. melage/resource/theme/rc/checkbox_indeterminate_focus.png +0 -0
  290. melage/resource/theme/rc/checkbox_indeterminate_focus@2x.png +0 -0
  291. melage/resource/theme/rc/checkbox_indeterminate_pressed.png +0 -0
  292. melage/resource/theme/rc/checkbox_indeterminate_pressed@2x.png +0 -0
  293. melage/resource/theme/rc/checkbox_unchecked.png +0 -0
  294. melage/resource/theme/rc/checkbox_unchecked0.png +0 -0
  295. melage/resource/theme/rc/checkbox_unchecked00.png +0 -0
  296. melage/resource/theme/rc/checkbox_unchecked@2x.png +0 -0
  297. melage/resource/theme/rc/checkbox_unchecked@2x0.png +0 -0
  298. melage/resource/theme/rc/checkbox_unchecked@2x00.png +0 -0
  299. melage/resource/theme/rc/checkbox_unchecked_disabled.png +0 -0
  300. melage/resource/theme/rc/checkbox_unchecked_disabled0.png +0 -0
  301. melage/resource/theme/rc/checkbox_unchecked_disabled00.png +0 -0
  302. melage/resource/theme/rc/checkbox_unchecked_disabled@2x.png +0 -0
  303. melage/resource/theme/rc/checkbox_unchecked_disabled@2x0.png +0 -0
  304. melage/resource/theme/rc/checkbox_unchecked_disabled@2x00.png +0 -0
  305. melage/resource/theme/rc/checkbox_unchecked_focus.png +0 -0
  306. melage/resource/theme/rc/checkbox_unchecked_focus0.png +0 -0
  307. melage/resource/theme/rc/checkbox_unchecked_focus00.png +0 -0
  308. melage/resource/theme/rc/checkbox_unchecked_focus@2x.png +0 -0
  309. melage/resource/theme/rc/checkbox_unchecked_focus@2x0.png +0 -0
  310. melage/resource/theme/rc/checkbox_unchecked_focus@2x00.png +0 -0
  311. melage/resource/theme/rc/checkbox_unchecked_pressed.png +0 -0
  312. melage/resource/theme/rc/checkbox_unchecked_pressed0.png +0 -0
  313. melage/resource/theme/rc/checkbox_unchecked_pressed00.png +0 -0
  314. melage/resource/theme/rc/checkbox_unchecked_pressed@2x.png +0 -0
  315. melage/resource/theme/rc/checkbox_unchecked_pressed@2x0.png +0 -0
  316. melage/resource/theme/rc/checkbox_unchecked_pressed@2x00.png +0 -0
  317. melage/resource/theme/rc/line_horizontal.png +0 -0
  318. melage/resource/theme/rc/line_horizontal@2x.png +0 -0
  319. melage/resource/theme/rc/line_horizontal_disabled.png +0 -0
  320. melage/resource/theme/rc/line_horizontal_disabled@2x.png +0 -0
  321. melage/resource/theme/rc/line_horizontal_focus.png +0 -0
  322. melage/resource/theme/rc/line_horizontal_focus@2x.png +0 -0
  323. melage/resource/theme/rc/line_horizontal_pressed.png +0 -0
  324. melage/resource/theme/rc/line_horizontal_pressed@2x.png +0 -0
  325. melage/resource/theme/rc/line_vertical.png +0 -0
  326. melage/resource/theme/rc/line_vertical@2x.png +0 -0
  327. melage/resource/theme/rc/line_vertical_disabled.png +0 -0
  328. melage/resource/theme/rc/line_vertical_disabled@2x.png +0 -0
  329. melage/resource/theme/rc/line_vertical_focus.png +0 -0
  330. melage/resource/theme/rc/line_vertical_focus@2x.png +0 -0
  331. melage/resource/theme/rc/line_vertical_pressed.png +0 -0
  332. melage/resource/theme/rc/line_vertical_pressed@2x.png +0 -0
  333. melage/resource/theme/rc/radio_checked.png +0 -0
  334. melage/resource/theme/rc/radio_checked@2x.png +0 -0
  335. melage/resource/theme/rc/radio_checked_disabled.png +0 -0
  336. melage/resource/theme/rc/radio_checked_disabled@2x.png +0 -0
  337. melage/resource/theme/rc/radio_checked_focus.png +0 -0
  338. melage/resource/theme/rc/radio_checked_focus@2x.png +0 -0
  339. melage/resource/theme/rc/radio_checked_pressed.png +0 -0
  340. melage/resource/theme/rc/radio_checked_pressed@2x.png +0 -0
  341. melage/resource/theme/rc/radio_unchecked.png +0 -0
  342. melage/resource/theme/rc/radio_unchecked@2x.png +0 -0
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melage/resource/color/Simple.txt ADDED
@@ -0,0 +1,18 @@
1
+ ################################################
2
+ # ITK-SnAP Label Description File
3
+ # File format:
4
+ # IDX -R- -G- -B- -A-- VIS MSH LABEL
5
+ # Fields:
6
+ # IDX: Zero-based index
7
+ # -R-: Red color component (0..255)
8
+ # -G-: Green color component (0..255)
9
+ # -B-: Blue color component (0..255)
10
+ # -A-: Label transparency (0.00 .. 1.00)
11
+ # VIS: Label visibility (0 or 1)
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+ # IDX: Label mesh visibility (0 or 1)
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+ # LABEL: Label description
14
+ ################################################
15
+ 0 0 0 0 0 0 0 "Clear Label"
16
+ 1 255 255 0 1 1 1 "Brain"
17
+ 2 0 255 255 1 1 1 "Ventricles"
18
+ 3 255 0 255 1 1 1 "Thalamus"
melage/resource/color/Tissue.txt ADDED
@@ -0,0 +1,24 @@
1
+ ################################################
2
+ # ITK-SnAP Label Description File
3
+ # File format:
4
+ # IDX -R- -G- -B- -A-- VIS MSH LABEL
5
+ # Fields:
6
+ # IDX: Zero-based index
7
+ # -R-: Red color component (0..255)
8
+ # -G-: Green color component (0..255)
9
+ # -B-: Blue color component (0..255)
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+ # -A-: Label transparency (0.00 .. 1.00)
11
+ # VIS: Label visibility (0 or 1)
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+ # IDX: Label mesh visibility (0 or 1)
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+ # LABEL: Label description
14
+ ################################################
15
+ 0 0 0 0 0 0 0 "Clear Label"
16
+ 1 255 0 0 1 1 1 "CSF"
17
+ 2 0 255 0 1 1 1 "Cortical gray matter"
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+ 3 0 0 255 1 1 1 "White matter"
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+ 4 255 255 0 1 1 1 "Background"
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+ 5 0 255 255 1 1 1 "Ventricles"
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+ 6 255 0 255 1 1 1 "Cerebellum"
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+ 7 255 239 213 1 1 1 "Deep Gray Matter"
23
+ 8 0 0 205 1 1 1 "Brainstem"
24
+ 9 205 133 63 1 1 1 "Hippocampi and Amygdala"
melage/resource/color/Tissue12.txt ADDED
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1
+ ################################################
2
+ # ITK-SnAP Label Description File
3
+ # File format:
4
+ # IDX -R- -G- -B- -A-- VIS MSH LABEL
5
+ # Fields:
6
+ # IDX: Zero-based index
7
+ # -R-: Red color component (0..255)
8
+ # -G-: Green color component (0..255)
9
+ # -B-: Blue color component (0..255)
10
+ # -A-: Label transparency (0.00 .. 1.00)
11
+ # VIS: Label visibility (0 or 1)
12
+ # IDX: Label mesh visibility (0 or 1)
13
+ # LABEL: Label description
14
+ ################################################
15
+ 0 0 0 0 0 0 0 "Clear Label"
16
+ 11 255 0 0 1 1 1 "CSF"
17
+ 22 0 255 0 1 1 1 "Cortical gray matter_L"
18
+ 23 0 255 0 1 1 1 "Cortical gray matter_R"
19
+ 33 0 0 255 1 1 1 "White matter_L"
20
+ 34 0 0 255 1 1 1 "White matter_R"
21
+ 44 255 255 0 1 1 1 "Background"
22
+ 55 0 255 255 1 1 1 "Ventricles_L"
23
+ 56 0 255 255 1 1 1 "Ventricles_R"
24
+ 66 255 0 255 1 1 1 "Cerebellum_L"
25
+ 67 255 0 255 1 1 1 "Cerebellum_R"
26
+ 77 255 239 213 1 1 1 "Deep Gray Matter_L"
27
+ 78 255 239 213 1 1 1 "Deep Gray Matter_R"
melage/resource/color/albert_LUT.txt ADDED
@@ -0,0 +1,102 @@
1
+ ################################################
2
+ # ITK-SnAP Label Description File
3
+ # File format:
4
+ # IDX -R- -G- -B- -A-- VIS MSH LABEL
5
+ # Fields:
6
+ # IDX: Zero-based index
7
+ # -R-: Red color component (0..255)
8
+ # -G-: Green color component (0..255)
9
+ # -B-: Blue color component (0..255)
10
+ # -A-: Label transparency (0.00 .. 1.00)
11
+ # VIS: Label visibility (0 or 1)
12
+ # IDX: Label mesh visibility (0 or 1)
13
+ # LABEL: Label description
14
+ ################################################
15
+ 0 0 0 0 0 0 0 "Clear Label"
16
+ 1 255 0 0 1 1 1 "Hippocampus left"
17
+ 2 0 255 0 1 1 1 "Hippocampus right"
18
+ 3 255 255 0 1 1 1 "Amygdala left"
19
+ 4 0 0 255 1 1 1 "Amygdala right"
20
+ 5 255 255 255 1 1 1 "Anterior temporal lobe, medial part left GM"
21
+ 6 255 255 255 1 1 1 "Anterior temporal lobe, medial part right GM"
22
+ 7 255 0 0 1 1 1 "Anterior temporal lobe, lateral part left GM"
23
+ 8 255 255 255 1 1 1 "Anterior temporal lobe, lateral part right GM"
24
+ 9 7 255 7 1 1 1 "Gyri parahippocampalis et ambiens anterior part left GM"
25
+ 10 255 255 7 1 1 1 "Gyri parahippocampalis et ambiens anterior part right GM"
26
+ 11 7 7 255 1 1 1 "Superior temporal gyrus, middle part left GM"
27
+ 12 255 7 255 1 1 1 "Superior temporal gyrus, middle part right GM"
28
+ 13 7 255 255 1 1 1 "Medial and inferior temporal gyri anterior part left GM"
29
+ 14 248 248 248 1 1 1 "Medial and inferior temporal gyri anterior part right GM"
30
+ 15 255 14 14 1 1 1 "Lateral occipitotemporal gyrus, gyrus fusiformis anterior part left GM"
31
+ 16 14 255 14 1 1 1 "Lateral occipitotemporal gyrus, gyrus fusiformis anterior part right GM"
32
+ 17 255 255 14 1 1 1 "Cerebellum left"
33
+ 18 14 14 255 1 1 1 "Cerebellum right"
34
+ 19 255 14 255 1 1 1 "Brainstem, spans the midline"
35
+ 20 14 255 255 1 1 1 "Insula right GM"
36
+ 21 241 241 241 1 1 1 "Insula left GM"
37
+ 22 255 21 21 1 1 1 "Occipital lobe right GM"
38
+ 23 21 255 21 1 1 1 "Occipital lobe left GM"
39
+ 24 255 255 21 1 1 1 "Gyri parahippocampalis et ambiens posterior part right GM"
40
+ 25 21 21 255 1 1 1 "Gyri parahippocampalis et ambiens posterior part left GM"
41
+ 26 255 21 255 1 1 1 "Lateral occipitotemporal gyrus, gyrus fusiformis posterior part right GM"
42
+ 27 21 255 255 1 1 1 "Lateral occipitotemporal gyrus, gyrus fusiformis posterior part left GM"
43
+ 28 234 234 234 1 1 1 "Medial and inferior temporal gyri posterior part right GM"
44
+ 29 255 28 28 1 1 1 "Medial and inferior temporal gyri posterior part left GM"
45
+ 30 28 255 28 1 1 1 "Superior temporal gyrus, posterior part right GM"
46
+ 31 255 255 28 1 1 1 "Superior temporal gyrus, posterior part left GM"
47
+ 32 28 28 255 1 1 1 "Cingulate gyrus, anterior part right GM"
48
+ 33 255 28 255 1 1 1 "Cingulate gyrus, anterior part left GM"
49
+ 34 28 255 255 1 1 1 "Cingulate gyrus, posterior part right GM"
50
+ 35 227 227 227 1 1 1 "Cingulate gyrus, posterior part left GM"
51
+ 36 255 35 35 1 1 1 "Frontal lobe right GM"
52
+ 37 35 255 35 1 1 1 "Frontal lobe left GM"
53
+ 38 255 255 35 1 1 1 "Parietal lobe right GM"
54
+ 39 35 35 255 1 1 1 "Parietal lobe left GM"
55
+ 40 255 35 255 1 1 1 "Caudate nucleus right"
56
+ 41 35 255 255 1 1 1 "Caudate nucleus left"
57
+ 42 220 220 220 1 1 1 "Thalamus right, high intensity part in T2"
58
+ 43 255 42 42 1 1 1 "Thalamus left, high intensity part in T2"
59
+ 44 42 255 42 1 1 1 "Subthalamic nucleus right"
60
+ 45 255 255 42 1 1 1 "Subthalamic nucleus left"
61
+ 46 42 42 255 1 1 1 "Lentiform Nucleus right"
62
+ 47 255 42 255 1 1 1 "Lentiform Nucleus left"
63
+ 48 42 255 255 1 1 1 "Corpus Callosum"
64
+ 49 150 50 150 1 1 1 "Lateral Ventricle left"
65
+ 50 255 49 49 1 1 1 "Lateral Ventricle right"
66
+ 51 255 255 255 1 1 1 "Anterior temporal lobe, medial part left WM"
67
+ 52 255 255 255 1 1 1 "Anterior temporal lobe, medial part right WM"
68
+ 53 255 0 0 1 1 1 "Anterior temporal lobe, lateral part left WM"
69
+ 54 255 255 255 1 1 1 "Anterior temporal lobe, lateral part right WM"
70
+ 55 7 255 7 1 1 1 "Gyri parahippocampalis et ambiens anterior part left WM"
71
+ 56 255 255 7 1 1 1 "Gyri parahippocampalis et ambiens anterior part right WM"
72
+ 57 7 7 255 1 1 1 "Superior temporal gyrus, middle part left WM"
73
+ 58 255 7 255 1 1 1 "Superior temporal gyrus, middle part right WM"
74
+ 59 7 255 255 1 1 1 "Medial and inferior temporal gyri anterior part left WM"
75
+ 60 248 248 248 1 1 1 "Medial and inferior temporal gyri anterior part right WM"
76
+ 61 255 14 14 1 1 1 "Lateral occipitotemporal gyrus, gyrus fusiformis anterior part left WM"
77
+ 62 14 255 14 1 1 1 "Lateral occipitotemporal gyrus, gyrus fusiformis anterior part right WM"
78
+ 63 14 255 255 1 1 1 "Insula right WM"
79
+ 64 241 241 241 1 1 1 "Insula left WM"
80
+ 65 255 21 21 1 1 1 "Occipital lobe right WM"
81
+ 66 21 255 21 1 1 1 "Occipital lobe left WM"
82
+ 67 255 255 21 1 1 1 "Gyri parahippocampalis et ambiens posterior part right WM"
83
+ 68 21 21 255 1 1 1 "Gyri parahippocampalis et ambiens posterior part left WM"
84
+ 69 255 21 255 1 1 1 "Lateral occipitotemporal gyrus, gyrus fusiformis posterior part right WM"
85
+ 70 21 255 255 1 1 1 "Lateral occipitotemporal gyrus, gyrus fusiformis posterior part left WM"
86
+ 71 234 234 234 1 1 1 "Medial and inferior temporal gyri posterior part right WM"
87
+ 72 255 28 28 1 1 1 "Medial and inferior temporal gyri posterior part left WM"
88
+ 73 28 255 28 1 1 1 "Superior temporal gyrus, posterior part right WM"
89
+ 74 255 255 28 1 1 1 "Superior temporal gyrus, posterior part left WM"
90
+ 75 28 28 255 1 1 1 "Cingulate gyrus, anterior part right WM"
91
+ 76 255 28 255 1 1 1 "Cingulate gyrus, anterior part left WM"
92
+ 77 28 255 255 1 1 1 "Cingulate gyrus, posterior part right WM"
93
+ 78 227 227 227 1 1 1 "Cingulate gyrus, posterior part left WM"
94
+ 79 255 35 35 1 1 1 "Frontal lobe right WM"
95
+ 80 35 255 35 1 1 1 "Frontal lobe left WM"
96
+ 81 255 255 35 1 1 1 "Parietal lobe right WM"
97
+ 82 35 35 255 1 1 1 "Parietal lobe left WM"
98
+ 83 146 121 255 1 1 1 "CSF"
99
+ 84 255 0 0 1 0 0 "Extra-cranial background"
100
+ 85 255 0 0 1 0 0 "Intra-cranial background"
101
+ 86 220 220 220 1 1 1 "Thalamus right, low intensity part in T2"
102
+ 87 255 42 42 1 1 1 "Thalamus left, low intensity part in T2"
melage/resource/color/mcrib_LUT.txt ADDED
@@ -0,0 +1,102 @@
1
+ 0 0 0 0 0 0 0 "Unknown"
2
+ 2 245 245 245 1 1 1 "Left-Cerebral-White-Matter"
3
+ 4 120 18 134 1 1 1 "Left-Lateral-Ventricle"
4
+ 9 0 118 14 1 1 1 "Left-Thalamus"
5
+ 11 122 186 220 1 1 1 "Left-Caudate"
6
+ 12 236 13 176 1 1 1 "Left-Putamen"
7
+ 13 12 48 255 1 1 1 "Left-Pallidum"
8
+ 14 204 182 142 1 1 1 "3rd-Ventricle"
9
+ 15 42 204 164 1 1 1 "4th-Ventricle"
10
+ 17 220 216 20 1 1 1 "Left-Hippocampus"
11
+ 18 103 255 255 1 1 1 "Left-Amygdala"
12
+ 24 60 60 60 1 1 1 "CSF"
13
+ 26 255 165 0 1 1 1 "Left-Accumbens-area"
14
+ 28 165 42 42 1 1 1 "Left-VentralDC"
15
+ 41 0 225 0 1 1 1 "Right-Cerebral-White-Matter"
16
+ 43 120 18 134 1 1 1 "Right-Lateral-Ventricle"
17
+ 48 0 118 14 1 1 1 "Right-Thalamus"
18
+ 50 122 186 220 1 1 1 "Right-Caudate"
19
+ 51 236 13 176 1 1 1 "Right-Putamen"
20
+ 52 13 48 255 1 1 1 "Right-Pallidum"
21
+ 53 220 216 20 1 1 1 "Right-Hippocampus"
22
+ 54 103 255 255 1 1 1 "Right-Amygdala"
23
+ 58 255 165 0 1 1 1 "Right-Accumbens-area"
24
+ 60 165 42 100 1 1 1 "Right-VentralDC"
25
+ 75 205 40 168 1 1 1 "Cerebellar_vermis_superior_posterior"
26
+ 76 210 139 3 1 1 1 "Cerebellar_vermis_anterior"
27
+ 90 255 10 177 1 1 1 "Cerebellar_vermis_inferior_posterior"
28
+ 91 50 80 120 1 1 1 "LH_Cerebellar_hemisphere"
29
+ 93 60 90 130 1 1 1 "RH_Cerebellar_hemisphere"
30
+ 170 119 159 176 1 1 1 "brainstem"
31
+ 192 250 255 50 1 1 1 "Corpus_Callosum"
32
+ 1000 25 5 25 1 1 1 "ctx-lh-unknown"
33
+ 1001 25 100 40 1 1 1 "ctx-lh-bankssts"
34
+ 1002 125 100 160 1 1 1 "ctx-lh-caudalanteriorcingulate"
35
+ 1003 100 25 0 1 1 1 "ctx-lh-caudalmiddlefrontal"
36
+ 1005 220 20 100 1 1 1 "ctx-lh-cuneus"
37
+ 1006 220 20 10 1 1 1 "ctx-lh-entorhinal"
38
+ 1007 180 220 140 1 1 1 "ctx-lh-fusiform"
39
+ 1008 220 60 220 1 1 1 "ctx-lh-inferiorparietal"
40
+ 1009 180 40 120 1 1 1 "ctx-lh-inferiortemporal"
41
+ 1010 140 20 140 1 1 1 "ctx-lh-isthmuscingulate"
42
+ 1011 20 30 140 1 1 1 "ctx-lh-lateraloccipital"
43
+ 1012 35 75 50 1 1 1 "ctx-lh-lateralorbitofrontal"
44
+ 1013 225 140 140 1 1 1 "ctx-lh-lingual"
45
+ 1014 200 35 75 1 1 1 "ctx-lh-medialorbitofrontal"
46
+ 1015 160 100 50 1 1 1 "ctx-lh-middletemporal"
47
+ 1016 20 220 60 1 1 1 "ctx-lh-parahippocampal"
48
+ 1017 60 220 60 1 1 1 "ctx-lh-paracentral"
49
+ 1018 220 180 140 1 1 1 "ctx-lh-parsopercularis"
50
+ 1019 90 200 90 1 1 1 "ctx-lh-parsorbitalis"
51
+ 1020 220 60 20 1 1 1 "ctx-lh-parstriangularis"
52
+ 1021 120 100 60 1 1 1 "ctx-lh-pericalcarine"
53
+ 1022 220 20 20 1 1 1 "ctx-lh-postcentral"
54
+ 1023 220 180 220 1 1 1 "ctx-lh-posteriorcingulate"
55
+ 1024 60 20 220 1 1 1 "ctx-lh-precentral"
56
+ 1025 160 140 180 1 1 1 "ctx-lh-precuneus"
57
+ 1026 80 20 140 1 1 1 "ctx-lh-rostralanteriorcingulate"
58
+ 1027 75 50 125 1 1 1 "ctx-lh-rostralmiddlefrontal"
59
+ 1028 20 220 160 1 1 1 "ctx-lh-superiorfrontal"
60
+ 1029 20 180 140 1 1 1 "ctx-lh-superiorparietal"
61
+ 1030 140 220 220 1 1 1 "ctx-lh-superiortemporal"
62
+ 1031 80 160 20 1 1 1 "ctx-lh-supramarginal"
63
+ 1032 100 0 100 1 1 1 "ctx-lh-frontalpole"
64
+ 1033 70 70 70 1 1 1 "ctx-lh-temporalpole"
65
+ 1034 150 150 200 1 1 1 "ctx-lh-transversetemporal"
66
+ 1035 255 192 32 1 1 1 "ctx-lh-insula"
67
+ 2000 25 5 25 1 1 1 "ctx-rh-unknown"
68
+ 2001 25 100 40 1 1 1 "ctx-rh-bankssts"
69
+ 2002 125 100 160 1 1 1 "ctx-rh-caudalanteriorcingulate"
70
+ 2003 100 25 0 1 1 1 "ctx-rh-caudalmiddlefrontal"
71
+ 2005 220 20 100 1 1 1 "ctx-rh-cuneus"
72
+ 2006 220 20 10 1 1 1 "ctx-rh-entorhinal"
73
+ 2007 180 220 140 1 1 1 "ctx-rh-fusiform"
74
+ 2008 220 60 220 1 1 1 "ctx-rh-inferiorparietal"
75
+ 2009 180 40 120 1 1 1 "ctx-rh-inferiortemporal"
76
+ 2010 140 20 140 1 1 1 "ctx-rh-isthmuscingulate"
77
+ 2011 20 30 140 1 1 1 "ctx-rh-lateraloccipital"
78
+ 2012 35 75 50 1 1 1 "ctx-rh-lateralorbitofrontal"
79
+ 2013 225 140 140 1 1 1 "ctx-rh-lingual"
80
+ 2014 200 35 75 1 1 1 "ctx-rh-medialorbitofrontal"
81
+ 2015 160 100 50 1 1 1 "ctx-rh-middletemporal"
82
+ 2016 20 220 60 1 1 1 "ctx-rh-parahippocampal"
83
+ 2017 60 220 60 1 1 1 "ctx-rh-paracentral"
84
+ 2018 220 180 140 1 1 1 "ctx-rh-parsopercularis"
85
+ 2019 90 200 90 1 1 1 "ctx-rh-parsorbitalis"
86
+ 2020 220 60 20 1 1 1 "ctx-rh-parstriangularis"
87
+ 2021 120 100 60 1 1 1 "ctx-rh-pericalcarine"
88
+ 2022 220 20 20 1 1 1 "ctx-rh-postcentral"
89
+ 2023 220 180 220 1 1 1 "ctx-rh-posteriorcingulate"
90
+ 2024 60 20 220 1 1 1 "ctx-rh-precentral"
91
+ 2025 160 140 180 1 1 1 "ctx-rh-precuneus"
92
+ 2026 80 20 140 1 1 1 "ctx-rh-rostralanteriorcingulate"
93
+ 2027 75 50 125 1 1 1 "ctx-rh-rostralmiddlefrontal"
94
+ 2028 20 220 160 1 1 1 "ctx-rh-superiorfrontal"
95
+ 2029 20 180 140 1 1 1 "ctx-rh-superiorparietal"
96
+ 2030 140 220 220 1 1 1 "ctx-rh-superiortemporal"
97
+ 2031 80 160 20 1 1 1 "ctx-rh-supramarginal"
98
+ 2032 100 0 100 1 1 1 "ctx-rh-frontalpole"
99
+ 2033 70 70 70 1 1 1 "ctx-rh-temporalpole"
100
+ 2034 150 150 200 1 1 1 "ctx-rh-transversetemporal"
101
+ 2035 255 192 32 1 1 1 "ctx-rh-insula"
102
+ 4000 0 0 0 0 0 0 "Extra-cranial background"
melage/resource/color/pediatric1.txt ADDED
@@ -0,0 +1,29 @@
1
+ 0 0 0 0 0 0 0 "Unknown"
2
+ 1 245 245 245 1 1 1 "Hippocampus_R"
3
+ 2 120 18 134 1 1 1 "Hippocampus_L"
4
+ 3 0 118 14 1 1 1 "Amygdala_R"
5
+ 4 122 186 220 1 1 1 "Amygdala_L"
6
+ 17 236 13 176 1 1 1 "Cerebellum_R"
7
+ 18 12 48 255 1 1 1 "Cerebellum_L"
8
+ 19 204 182 142 1 1 1 "Brainstem"
9
+ 34 42 204 164 1 1 1 "Caudate nucleus_L"
10
+ 35 220 216 20 1 1 1 "Caudate nucleus_R"
11
+ 36 103 255 255 1 1 1 "Nucleus accumbens_L"
12
+ 37 60 60 60 1 1 1 "Nucleus accumbens_R"
13
+ 38 255 165 0 1 1 1 "Putamen_L"
14
+ 39 165 42 42 1 1 1 "Putamen_R"
15
+ 40 0 225 0 1 1 1 "Thalamus_L"
16
+ 41 120 18 134 1 1 1 "Thalamus_R"
17
+ 42 0 118 14 1 1 1 "Pallidum_L"
18
+ 43 122 186 220 1 1 1 "Pallidum_R"
19
+ 44 236 13 176 1 1 1 "Corpus-callosum"
20
+ 45 13 48 255 1 1 1 "Lateral ventricle_frontal_R"
21
+ 46 220 216 20 1 1 1 "Lateral ventricle_frontal_L"
22
+ 47 103 255 255 1 1 1 "Lateral ventricle_temporal_R"
23
+ 48 255 165 0 1 1 1 "Lateral ventricle_temporal_L"
24
+ 49 165 42 100 1 1 1 "Third-ventricle"
25
+ 84 255 40 40 1 1 1 "CSF"
26
+ 85 210 139 3 1 1 1 "White Matter_R"
27
+ 86 210 139 3 1 1 1 "White Matter_L"
28
+ 87 255 10 177 1 1 1 "Gray Matter_R"
29
+ 88 255 10 177 1 1 1 "Gray Matter_L"
melage/resource/color/pediatric1_old.txt ADDED
@@ -0,0 +1,27 @@
1
+ 0 0 0 0 0 0 0 "Unknown"
2
+ 1 245 245 245 1 1 1 "Hippocampus_R"
3
+ 2 120 18 134 1 1 1 "Hippocampus_L"
4
+ 3 0 118 14 1 1 1 "Amygdala_R"
5
+ 4 122 186 220 1 1 1 "Amygdala_L"
6
+ 17 236 13 176 1 1 1 "Cerebellum_R"
7
+ 18 12 48 255 1 1 1 "Cerebellum_L"
8
+ 19 204 182 142 1 1 1 "Brainstem"
9
+ 34 42 204 164 1 1 1 "Caudate nucleus_L"
10
+ 35 220 216 20 1 1 1 "Caudate nucleus_R"
11
+ 36 103 255 255 1 1 1 "Nucleus accumbens_L"
12
+ 37 60 60 60 1 1 1 "Nucleus accumbens_R"
13
+ 38 255 165 0 1 1 1 "Putamen_L"
14
+ 39 165 42 42 1 1 1 "Putamen_R"
15
+ 40 0 225 0 1 1 1 "Thalamus_L"
16
+ 41 120 18 134 1 1 1 "Thalamus_R"
17
+ 42 0 118 14 1 1 1 "Pallidum_L"
18
+ 43 122 186 220 1 1 1 "Pallidum_R"
19
+ 44 236 13 176 1 1 1 "Corpus-callosum"
20
+ 45 13 48 255 1 1 1 "Lateral ventricle_frontal_R"
21
+ 46 220 216 20 1 1 1 "Lateral ventricle_frontal_L"
22
+ 47 103 255 255 1 1 1 "Lateral ventricle_temporal_R"
23
+ 48 255 165 0 1 1 1 "Lateral ventricle_temporal_L"
24
+ 49 165 42 100 1 1 1 "Third-ventricle"
25
+ 84 255 40 40 1 1 1 "CSF"
26
+ 85 210 139 3 1 1 1 "Gray Matter"
27
+ 86 255 10 177 1 1 1 "White Matter"
melage/resource/color/pediatric2.txt ADDED
@@ -0,0 +1,87 @@
1
+ 0 0 0 0 0 0 0 "Unknown"
2
+ 1 245 245 245 1 1 1 "Hippocampus R"
3
+ 2 120 18 134 1 1 1 "Hippocampus L"
4
+ 3 0 118 14 1 1 1 "Amygdala R"
5
+ 4 122 186 220 1 1 1 "Amygdala L"
6
+ 5 236 13 176 1 1 1 "Anterior temporal lobe, medial part R"
7
+ 6 12 48 255 1 1 1 "Anterior temporal lobe, medial part L"
8
+ 7 204 182 142 1 1 1 "Anterior temporal lobe, lateral part R"
9
+ 8 42 204 164 1 1 1 "Anterior temporal lobe, lateral part L"
10
+ 9 220 216 20 1 1 1 "Gyri parahippocampalis et ambiens R"
11
+ 10 103 255 255 1 1 1 "Gyri parahippocampalis et ambiens L"
12
+ 11 60 60 60 1 1 1 "Superior temporal gyrus, posterior R"
13
+ 12 255 165 0 1 1 1 "Superior temporal gyrus, posterior L"
14
+ 13 165 42 42 1 1 1 "Medial and inferior temporal gyri R"
15
+ 14 0 225 0 1 1 1 "Medial and inferior temporal gyri L"
16
+ 15 120 18 134 1 1 1 "Lateral occipitotemporal gyrus (gyrus fusiformis)R"
17
+ 16 0 118 14 1 1 1 "Lateral occipitotemporal gyrus (gyrus fusiformis)L"
18
+ 17 122 186 220 1 1 1 "Cerebellum R"
19
+ 18 236 13 176 1 1 1 "Cerebellum L"
20
+ 19 13 48 255 1 1 1 "Brainstem (spans the midline)"
21
+ 20 220 216 20 1 1 1 "Insula L"
22
+ 21 103 255 255 1 1 1 "Insula R"
23
+ 22 255 165 0 1 1 1 "Occipital lobe L"
24
+ 23 165 42 100 1 1 1 "Occipital lobe R"
25
+ 24 205 40 168 1 1 1 "Cingulate gyrus, anterior part L"
26
+ 25 210 139 3 1 1 1 "Cingulate gyrus, anterior part R"
27
+ 26 255 10 177 1 1 1 "Cingulate gyrus, posterior part L"
28
+ 27 50 80 120 1 1 1 "Cingulate gyrus, posterior part R"
29
+ 28 60 90 130 1 1 1 "Frontal lobe L"
30
+ 29 119 159 176 1 1 1 "Frontal lobe R"
31
+ 30 250 255 50 1 1 1 "Posterior temporal lobe L"
32
+ 31 25 5 25 1 1 1 "Posterior temporal lobe R"
33
+ 32 25 100 40 1 1 1 "Parietal lobe L"
34
+ 33 125 100 160 1 1 1 "Parietal lobe R"
35
+ 34 100 25 0 1 1 1 "Caudate nucleus L"
36
+ 35 220 20 100 1 1 1 "Caudate nucleus R"
37
+ 36 220 20 10 1 1 1 "Nucleus accumbens L"
38
+ 37 180 220 140 1 1 1 "Nucleus accumbens R"
39
+ 38 220 60 220 1 1 1 "Putamen L"
40
+ 39 180 40 120 1 1 1 "Putamen R"
41
+ 40 140 20 140 1 1 1 "Thalamus L"
42
+ 41 20 30 140 1 1 1 "Thalamus R"
43
+ 42 35 75 50 1 1 1 "Pallidum (globus pallidus)L"
44
+ 43 225 140 140 1 1 1 "Pallidum (globus pallidus)R"
45
+ 44 200 35 75 1 1 1 "Corpus callosum"
46
+ 45 160 100 50 1 1 1 "Lateral ventricle, frontal horn, central part and occipital horn L"
47
+ 46 20 220 60 1 1 1 "Lateral ventricle, frontal horn, central part and occipital horn R"
48
+ 47 60 220 60 1 1 1 "Lateral ventricle, temporal horn L"
49
+ 48 220 180 140 1 1 1 "Lateral ventricle, temporal horn R"
50
+ 49 90 200 90 1 1 1 "Third ventricle"
51
+ 50 220 60 20 1 1 1 "Precentral gyrus L"
52
+ 51 120 100 60 1 1 1 "Precentral gyrus R"
53
+ 52 220 20 20 1 1 1 "Straight gyrus (gyrus rectus) L"
54
+ 53 220 180 220 1 1 1 "Straight gyrus (gyrus rectus) R"
55
+ 54 60 20 220 1 1 1 "Anterior orbital gyrus L"
56
+ 55 160 140 180 1 1 1 "Anterior orbital gyrus R"
57
+ 56 80 20 140 1 1 1 "Inferior frontal gyrus L"
58
+ 57 75 50 125 1 1 1 "Inferior frontal gyrus R"
59
+ 58 20 220 160 1 1 1 "Superior frontal gyrus L"
60
+ 59 20 180 140 1 1 1 "Superior frontal gyrus R"
61
+ 60 140 220 220 1 1 1 "Postcentral gyrus L"
62
+ 61 80 160 20 1 1 1 "Postcentral gyrus R"
63
+ 62 100 0 100 1 1 1 "Superior parietal gyrus L"
64
+ 63 70 70 70 1 1 1 "Superior parietal gyrus R"
65
+ 64 150 150 200 1 1 1 "Lingual gyrus L"
66
+ 65 255 192 32 1 1 1 "Lingual gyrus R"
67
+ 66 25 5 25 1 1 1 "Cuneus L"
68
+ 67 25 100 40 1 1 1 "Cuneus R"
69
+ 68 125 100 160 1 1 1 "Medial orbital gyrus L"
70
+ 69 100 25 0 1 1 1 "Medial orbital gyrus R"
71
+ 70 220 20 100 1 1 1 "Lateral orbital gyrus L"
72
+ 71 220 20 10 1 1 1 "Lateral orbital gyrus R"
73
+ 72 180 220 140 1 1 1 "Posterior orbital gyrus L"
74
+ 73 220 60 220 1 1 1 "Posterior orbital gyrus R"
75
+ 74 180 40 120 1 1 1 "Substantial nigra L"
76
+ 75 140 20 140 1 1 1 "Substantial nigra R"
77
+ 76 20 30 140 1 1 1 "Subgenual frontal cortex L"
78
+ 77 35 75 50 1 1 1 "Subgenual frontal cortex R"
79
+ 78 225 140 140 1 1 1 "Subcallosal area L"
80
+ 79 200 35 75 1 1 1 "Subcallosal area R"
81
+ 80 160 100 50 1 1 1 "Pre-subgenual frontal cortex L"
82
+ 81 20 220 60 1 1 1 "Pre-subgenual frontal cortex R"
83
+ 82 60 220 60 1 1 1 "Superior temporal gyrus, anterior part L"
84
+ 83 220 180 140 1 1 1 "Superior temporal gyrus, anterior part R"
85
+ 84 1 1 1 1 1 1 "CSF"
86
+ 85 220 60 20 1 1 1 "White Matter R"
87
+ 86 120 100 60 1 1 1 "White Matter L"
melage/resource/color/pediatric3.txt ADDED
@@ -0,0 +1,29 @@
1
+ 0 0 0 0 0 0 0 "Unknown"
2
+ 1 245 245 245 1 1 1 "Hippocampus_R"
3
+ 2 120 18 134 1 1 1 "Hippocampus_L"
4
+ 3 0 118 14 1 1 1 "Amygdala_R"
5
+ 4 122 186 220 1 1 1 "Amygdala_L"
6
+ 17 236 13 176 1 1 1 "Cerebellum_R"
7
+ 18 12 48 255 1 1 1 "Cerebellum_L"
8
+ 19 204 182 142 1 1 1 "Brainstem"
9
+ 34 42 204 164 1 1 1 "Caudate nucleus_L"
10
+ 35 220 216 20 1 1 1 "Caudate nucleus_R"
11
+ 36 103 255 255 1 1 1 "Nucleus accumbens_L"
12
+ 37 60 60 60 1 1 1 "Nucleus accumbens_R"
13
+ 38 255 165 0 1 1 1 "Putamen_L"
14
+ 39 165 42 42 1 1 1 "Putamen_R"
15
+ 40 0 225 0 1 1 1 "Thalamus_L"
16
+ 41 120 18 134 1 1 1 "Thalamus_R"
17
+ 42 0 118 14 1 1 1 "Pallidum_L"
18
+ 43 122 186 220 1 1 1 "Pallidum_R"
19
+ 44 236 13 176 1 1 1 "Corpus-callosum"
20
+ 45 13 48 255 1 1 1 "Lateral ventricle_frontal_R"
21
+ 46 220 216 20 1 1 1 "Lateral ventricle_frontal_L"
22
+ 47 103 255 255 1 1 1 "Lateral ventricle_temporal_R"
23
+ 48 255 165 0 1 1 1 "Lateral ventricle_temporal_L"
24
+ 49 165 42 100 1 1 1 "Third-ventricle"
25
+ 84 255 40 40 1 1 1 "CSF"
26
+ 85 210 139 3 1 1 1 "Gray Matter_R"
27
+ 86 210 139 3 1 1 1 "Gray Matter_L"
28
+ 87 255 10 177 1 1 1 "White Matter_R"
29
+ 88 255 10 177 1 1 1 "White Matter_L"
melage/resource/color/pediatrics (copy).csv ADDED
@@ -0,0 +1,103 @@
1
+ 0,0,0,0,0,0,0,Unknown,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
2
+ 1,245,245,245,1,1,1,Hippocampus_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
3
+ 2,120,18,134,1,1,1,Hippocampus_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
4
+ 3,0,118,14,1,1,1,Amygdala_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
5
+ 4,122,186,220,1,1,1,Amygdala_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
6
+ 17,236,13,176,1,1,1,Cerebellum_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
7
+ 18,12,48,255,1,1,1,Cerebellum_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
8
+ 19,204,182,142,1,1,1,Brainstem,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
9
+ 34,42,204,164,1,1,1,Caudate nucleus_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
10
+ 35,220,216,20,1,1,1,Caudate nucleus_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
11
+ 36,103,255,255,1,1,1,Nucleus accumbens_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
12
+ 37,60,60,60,1,1,1,Nucleus accumbens_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
13
+ 38,255,165,0,1,1,1,Putamen_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
14
+ 39,165,42,42,1,1,1,Putamen_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
15
+ 40,0,225,0,1,1,1,Thalamus_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
16
+ 41,120,18,134,1,1,1,Thalamus_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
17
+ 42,0,118,14,1,1,1,Pallidum_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
18
+ 43,122,186,220,1,1,1,Pallidum_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
19
+ 44,236,13,176,1,1,1,"Corpus-callosum
20
+ ",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
21
+ 45,13,48,255,1,1,1,Lateral ventricle_frontal_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
22
+ 46,220,216,20,1,1,1,Lateral ventricle_frontal_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
23
+ 47,103,255,255,1,1,1,Lateral ventricle_temporal_R,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
24
+ 48,255,165,0,1,1,1,Lateral ventricle_temporal_L,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
25
+ 49,165,42,100,1,1,1,Third-ventricle,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
26
+ 84,255,40,40,1,1,1,CSF,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
27
+ 85,210,139,3,1,1,1,Gray Matter,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
28
+ 86,255,10,177,1,1,1,White Matter,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
29
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
30
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
31
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
32
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33
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34
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36
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37
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38
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40
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
41
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42
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
43
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
44
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45
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
46
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
47
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
48
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
49
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
50
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
51
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
52
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
53
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
54
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
55
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
56
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57
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65
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
66
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
67
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70
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
72
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
83
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
87
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
90
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
91
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
92
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
94
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
95
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
96
+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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+ ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
103
+ ,,,,,,,,,,,,,,,0,,,,,,,0,,,,,,,0,,,,,,,0,,,,,,,Extra-cranial background
melage/resource/color/tissue_seg.txt ADDED
@@ -0,0 +1,4 @@
1
+ 20000 255 0 0 1 1 1 "CSF"
2
+ 24 0 255 0 1 1 1 "Cortical gray matter"
3
+ 10000 0 0 255 1 1 1 "White matter"
4
+ 4000 255 255 0 1 1 1 "Background"
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