melage 0.0.65__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- melage/__init__.py +16 -0
- melage/cli.py +4 -0
- melage/graphics/GLGraphicsItem.py +286 -0
- melage/graphics/GLViewWidget.py +595 -0
- melage/graphics/Transform3D.py +55 -0
- melage/graphics/__init__.py +8 -0
- melage/graphics/functions.py +101 -0
- melage/graphics/items/GLAxisItem.py +149 -0
- melage/graphics/items/GLGridItem.py +178 -0
- melage/graphics/items/GLPolygonItem.py +77 -0
- melage/graphics/items/GLScatterPlotItem.py +135 -0
- melage/graphics/items/GLVolumeItem.py +280 -0
- melage/graphics/items/GLVolumeItem_b.py +237 -0
- melage/graphics/items/__init__.py +0 -0
- melage/graphics/shaders.py +202 -0
- melage/main.py +270 -0
- melage/requirements22.txt +25 -0
- melage/requirements_old.txt +28 -0
- melage/resource/0circle.png +0 -0
- melage/resource/0circle_faded.png +0 -0
- melage/resource/3d.png +0 -0
- melage/resource/3d.psd +0 -0
- melage/resource/3dFaded.png +0 -0
- melage/resource/Eraser.png +0 -0
- melage/resource/EraserFaded.png +0 -0
- melage/resource/EraserX.png +0 -0
- melage/resource/EraserXFaded.png +0 -0
- melage/resource/Eraser_icon.svg +79 -0
- melage/resource/Hand.png +0 -0
- melage/resource/HandIcons_0.png +0 -0
- melage/resource/Hand_IX.png +0 -0
- melage/resource/Hand_IXFaded.png +0 -0
- melage/resource/Handsqueezed.png +0 -0
- melage/resource/Handwriting (copy).png +0 -0
- melage/resource/Handwriting.png +0 -0
- melage/resource/HandwritingMinus.png +0 -0
- melage/resource/HandwritingMinusX.png +0 -0
- melage/resource/HandwritingPlus.png +0 -0
- melage/resource/HandwritingPlusX.png +0 -0
- melage/resource/Move_icon.svg +8 -0
- melage/resource/PngItem_2422924.png +0 -0
- melage/resource/about.png +0 -0
- melage/resource/about_logo.png +0 -0
- melage/resource/about_logo0.png +0 -0
- melage/resource/action_check.png +0 -0
- melage/resource/action_check_OFF.png +0 -0
- melage/resource/arrow).png +0 -0
- melage/resource/arrow.png +0 -0
- melage/resource/arrowFaded.png +0 -0
- melage/resource/arrow_org.png +0 -0
- melage/resource/arrow_org.png.png +0 -0
- melage/resource/arrows.png +0 -0
- melage/resource/authors.mp4 +0 -0
- melage/resource/box.png +0 -0
- melage/resource/check-image-icon-0.jpg +0 -0
- melage/resource/circle.png +0 -0
- melage/resource/circle_faded.png +0 -0
- melage/resource/circle_or.png +0 -0
- melage/resource/close.png +0 -0
- melage/resource/close_bg.png +0 -0
- melage/resource/color/Simple.txt +18 -0
- melage/resource/color/Tissue.txt +24 -0
- melage/resource/color/Tissue12.txt +27 -0
- melage/resource/color/albert_LUT.txt +102 -0
- melage/resource/color/mcrib_LUT.txt +102 -0
- melage/resource/color/pediatric1.txt +29 -0
- melage/resource/color/pediatric1_old.txt +27 -0
- melage/resource/color/pediatric2.txt +87 -0
- melage/resource/color/pediatric3.txt +29 -0
- melage/resource/color/pediatrics (copy).csv +103 -0
- melage/resource/color/tissue_seg.txt +4 -0
- melage/resource/contour.png +0 -0
- melage/resource/contour.svg +2 -0
- melage/resource/contourFaded.png +0 -0
- melage/resource/contourX.png +0 -0
- melage/resource/contourXFaded.png +0 -0
- melage/resource/dti.png +0 -0
- melage/resource/dti0.png +0 -0
- melage/resource/dti222.png +0 -0
- melage/resource/dti_or.png +0 -0
- melage/resource/eco.png +0 -0
- melage/resource/eco22.png +0 -0
- melage/resource/eco_old.png +0 -0
- melage/resource/eco_or.png +0 -0
- melage/resource/eco_or2.png +0 -0
- melage/resource/eco_seg.png +0 -0
- melage/resource/eco_seg_old.png +0 -0
- melage/resource/export.png +0 -0
- melage/resource/hand-grab-icon-10.jpg +0 -0
- melage/resource/hand-grab-icon-25.jpg +0 -0
- melage/resource/info.png +0 -0
- melage/resource/line.png +0 -0
- melage/resource/linefaded.png +0 -0
- melage/resource/load.png +0 -0
- melage/resource/main.ico +0 -0
- melage/resource/manual_images/3D_rightc.png +0 -0
- melage/resource/manual_images/3D_rightc_goto.png +0 -0
- melage/resource/manual_images/3D_rightc_paint.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_draw1.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_draw2.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render2.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render3.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render4.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render5.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render6.png +0 -0
- melage/resource/manual_images/3D_rightc_seg.png +0 -0
- melage/resource/manual_images/exit_toolbar.png +0 -0
- melage/resource/manual_images/load_image_file.png +0 -0
- melage/resource/manual_images/load_image_file_openp.png +0 -0
- melage/resource/manual_images/main_page.png +0 -0
- melage/resource/manual_images/menu_file.png +0 -0
- melage/resource/manual_images/menu_file_export.png +0 -0
- melage/resource/manual_images/menu_file_import.png +0 -0
- melage/resource/manual_images/menu_file_settings.png +0 -0
- melage/resource/manual_images/menu_file_ss.png +0 -0
- melage/resource/manual_images/open_save_load.png +0 -0
- melage/resource/manual_images/panning_toolbar.png +0 -0
- melage/resource/manual_images/segmentation_toolbar.png +0 -0
- melage/resource/manual_images/tab_mri.png +0 -0
- melage/resource/manual_images/tab_us.png +0 -0
- melage/resource/manual_images/tabs.png +0 -0
- melage/resource/manual_images/toolbar_tools.png +0 -0
- melage/resource/manual_images/tools_basic.png +0 -0
- melage/resource/manual_images/tools_bet.png +0 -0
- melage/resource/manual_images/tools_cs.png +0 -0
- melage/resource/manual_images/tools_deepbet.png +0 -0
- melage/resource/manual_images/tools_imageinfo.png +0 -0
- melage/resource/manual_images/tools_maskO.png +0 -0
- melage/resource/manual_images/tools_masking.png +0 -0
- melage/resource/manual_images/tools_n4b.png +0 -0
- melage/resource/manual_images/tools_resize.png +0 -0
- melage/resource/manual_images/tools_ruler.png +0 -0
- melage/resource/manual_images/tools_seg.png +0 -0
- melage/resource/manual_images/tools_threshold.png +0 -0
- melage/resource/manual_images/tools_tools.png +0 -0
- melage/resource/manual_images/widget_color.png +0 -0
- melage/resource/manual_images/widget_color_add.png +0 -0
- melage/resource/manual_images/widget_color_add2.png +0 -0
- melage/resource/manual_images/widget_color_additional.png +0 -0
- melage/resource/manual_images/widget_images.png +0 -0
- melage/resource/manual_images/widget_images2.png +0 -0
- melage/resource/manual_images/widget_images3.png +0 -0
- melage/resource/manual_images/widget_marker.png +0 -0
- melage/resource/manual_images/widget_mri.png +0 -0
- melage/resource/manual_images/widget_mri2.png +0 -0
- melage/resource/manual_images/widget_segintensity.png +0 -0
- melage/resource/manual_images/widget_tab_mutualview.png +0 -0
- melage/resource/manual_images/widget_tab_mutualview2.png +0 -0
- melage/resource/manual_images/widget_table.png +0 -0
- melage/resource/manual_images/widget_table2.png +0 -0
- melage/resource/manual_images/widget_us.png +0 -0
- melage/resource/melage_top.ico +0 -0
- melage/resource/melage_top.png +0 -0
- melage/resource/melage_top0.png +0 -0
- melage/resource/melage_top1.png +0 -0
- melage/resource/melage_top4.png +0 -0
- melage/resource/mri (copy).png +0 -0
- melage/resource/mri.png +0 -0
- melage/resource/mri0.png +0 -0
- melage/resource/mri000.png +0 -0
- melage/resource/mri22.png +0 -0
- melage/resource/mri_big.png +0 -0
- melage/resource/mri_old.png +0 -0
- melage/resource/mri_seg.png +0 -0
- melage/resource/mri_seg_old.png +0 -0
- melage/resource/new.png +0 -0
- melage/resource/open.png +0 -0
- melage/resource/open2.png +0 -0
- melage/resource/pan.png +0 -0
- melage/resource/pencil.png +0 -0
- melage/resource/pencilFaded.png +0 -0
- melage/resource/points.png +0 -0
- melage/resource/pointsFaded.png +0 -0
- melage/resource/rotate.png +0 -0
- melage/resource/ruler.png +0 -0
- melage/resource/rulerFaded.png +0 -0
- melage/resource/s.png +0 -0
- melage/resource/s.psd +0 -0
- melage/resource/save.png +0 -0
- melage/resource/saveas.png +0 -0
- melage/resource/seg_mri.png +0 -0
- melage/resource/seg_mri2.png +0 -0
- melage/resource/settings.png +0 -0
- melage/resource/synch.png +0 -0
- melage/resource/synchFaded.png +0 -0
- melage/resource/theme/rc/.keep +1 -0
- melage/resource/theme/rc/arrow_down.png +0 -0
- melage/resource/theme/rc/arrow_down@2x.png +0 -0
- melage/resource/theme/rc/arrow_down_disabled.png +0 -0
- melage/resource/theme/rc/arrow_down_disabled@2x.png +0 -0
- melage/resource/theme/rc/arrow_down_focus.png +0 -0
- melage/resource/theme/rc/arrow_down_focus@2x.png +0 -0
- melage/resource/theme/rc/arrow_down_pressed.png +0 -0
- melage/resource/theme/rc/arrow_down_pressed@2x.png +0 -0
- melage/resource/theme/rc/arrow_left.png +0 -0
- melage/resource/theme/rc/arrow_left@2x.png +0 -0
- melage/resource/theme/rc/arrow_left_disabled.png +0 -0
- melage/resource/theme/rc/arrow_left_disabled@2x.png +0 -0
- melage/resource/theme/rc/arrow_left_focus.png +0 -0
- melage/resource/theme/rc/arrow_left_focus@2x.png +0 -0
- melage/resource/theme/rc/arrow_left_pressed.png +0 -0
- melage/resource/theme/rc/arrow_left_pressed@2x.png +0 -0
- melage/resource/theme/rc/arrow_right.png +0 -0
- melage/resource/theme/rc/arrow_right@2x.png +0 -0
- melage/resource/theme/rc/arrow_right_disabled.png +0 -0
- melage/resource/theme/rc/arrow_right_disabled@2x.png +0 -0
- melage/resource/theme/rc/arrow_right_focus.png +0 -0
- melage/resource/theme/rc/arrow_right_focus@2x.png +0 -0
- melage/resource/theme/rc/arrow_right_pressed.png +0 -0
- melage/resource/theme/rc/arrow_right_pressed@2x.png +0 -0
- melage/resource/theme/rc/arrow_up.png +0 -0
- melage/resource/theme/rc/arrow_up@2x.png +0 -0
- melage/resource/theme/rc/arrow_up_disabled.png +0 -0
- melage/resource/theme/rc/arrow_up_disabled@2x.png +0 -0
- melage/resource/theme/rc/arrow_up_focus.png +0 -0
- melage/resource/theme/rc/arrow_up_focus@2x.png +0 -0
- melage/resource/theme/rc/arrow_up_pressed.png +0 -0
- melage/resource/theme/rc/arrow_up_pressed@2x.png +0 -0
- melage/resource/theme/rc/base_icon.png +0 -0
- melage/resource/theme/rc/base_icon@2x.png +0 -0
- melage/resource/theme/rc/base_icon_disabled.png +0 -0
- melage/resource/theme/rc/base_icon_disabled@2x.png +0 -0
- melage/resource/theme/rc/base_icon_focus.png +0 -0
- melage/resource/theme/rc/base_icon_focus@2x.png +0 -0
- melage/resource/theme/rc/base_icon_pressed.png +0 -0
- melage/resource/theme/rc/base_icon_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_closed.png +0 -0
- melage/resource/theme/rc/branch_closed@2x.png +0 -0
- melage/resource/theme/rc/branch_closed_disabled.png +0 -0
- melage/resource/theme/rc/branch_closed_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_closed_focus.png +0 -0
- melage/resource/theme/rc/branch_closed_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_closed_pressed.png +0 -0
- melage/resource/theme/rc/branch_closed_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_end.png +0 -0
- melage/resource/theme/rc/branch_end@2x.png +0 -0
- melage/resource/theme/rc/branch_end_disabled.png +0 -0
- melage/resource/theme/rc/branch_end_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_end_focus.png +0 -0
- melage/resource/theme/rc/branch_end_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_end_pressed.png +0 -0
- melage/resource/theme/rc/branch_end_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_line.png +0 -0
- melage/resource/theme/rc/branch_line@2x.png +0 -0
- melage/resource/theme/rc/branch_line_disabled.png +0 -0
- melage/resource/theme/rc/branch_line_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_line_focus.png +0 -0
- melage/resource/theme/rc/branch_line_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_line_pressed.png +0 -0
- melage/resource/theme/rc/branch_line_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_more.png +0 -0
- melage/resource/theme/rc/branch_more@2x.png +0 -0
- melage/resource/theme/rc/branch_more_disabled.png +0 -0
- melage/resource/theme/rc/branch_more_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_more_focus.png +0 -0
- melage/resource/theme/rc/branch_more_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_more_pressed.png +0 -0
- melage/resource/theme/rc/branch_more_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_open.png +0 -0
- melage/resource/theme/rc/branch_open@2x.png +0 -0
- melage/resource/theme/rc/branch_open_disabled.png +0 -0
- melage/resource/theme/rc/branch_open_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_open_focus.png +0 -0
- melage/resource/theme/rc/branch_open_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_open_pressed.png +0 -0
- melage/resource/theme/rc/branch_open_pressed@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked.png +0 -0
- melage/resource/theme/rc/checkbox_checked0.png +0 -0
- melage/resource/theme/rc/checkbox_checked@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_checked@2x000.png.png +0 -0
- melage/resource/theme/rc/checkbox_checked_disabled.png +0 -0
- melage/resource/theme/rc/checkbox_checked_disabled0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_disabled@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked_disabled@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_focus.png +0 -0
- melage/resource/theme/rc/checkbox_checked_focus0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_focus@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked_focus@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_pressed.png +0 -0
- melage/resource/theme/rc/checkbox_checked_pressed0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_pressed@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked_pressed@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate@2x.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_disabled.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_disabled@2x.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_focus.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_focus@2x.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_pressed.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_pressed@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked@2x00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled@2x00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus@2x00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed@2x00.png +0 -0
- melage/resource/theme/rc/line_horizontal.png +0 -0
- melage/resource/theme/rc/line_horizontal@2x.png +0 -0
- melage/resource/theme/rc/line_horizontal_disabled.png +0 -0
- melage/resource/theme/rc/line_horizontal_disabled@2x.png +0 -0
- melage/resource/theme/rc/line_horizontal_focus.png +0 -0
- melage/resource/theme/rc/line_horizontal_focus@2x.png +0 -0
- melage/resource/theme/rc/line_horizontal_pressed.png +0 -0
- melage/resource/theme/rc/line_horizontal_pressed@2x.png +0 -0
- melage/resource/theme/rc/line_vertical.png +0 -0
- melage/resource/theme/rc/line_vertical@2x.png +0 -0
- melage/resource/theme/rc/line_vertical_disabled.png +0 -0
- melage/resource/theme/rc/line_vertical_disabled@2x.png +0 -0
- melage/resource/theme/rc/line_vertical_focus.png +0 -0
- melage/resource/theme/rc/line_vertical_focus@2x.png +0 -0
- melage/resource/theme/rc/line_vertical_pressed.png +0 -0
- melage/resource/theme/rc/line_vertical_pressed@2x.png +0 -0
- melage/resource/theme/rc/radio_checked.png +0 -0
- melage/resource/theme/rc/radio_checked@2x.png +0 -0
- melage/resource/theme/rc/radio_checked_disabled.png +0 -0
- melage/resource/theme/rc/radio_checked_disabled@2x.png +0 -0
- melage/resource/theme/rc/radio_checked_focus.png +0 -0
- melage/resource/theme/rc/radio_checked_focus@2x.png +0 -0
- melage/resource/theme/rc/radio_checked_pressed.png +0 -0
- melage/resource/theme/rc/radio_checked_pressed@2x.png +0 -0
- melage/resource/theme/rc/radio_unchecked.png +0 -0
- melage/resource/theme/rc/radio_unchecked@2x.png +0 -0
- melage/resource/theme/rc/radio_unchecked_disabled.png +0 -0
- melage/resource/theme/rc/radio_unchecked_disabled@2x.png +0 -0
- melage/resource/theme/rc/radio_unchecked_focus.png +0 -0
- melage/resource/theme/rc/radio_unchecked_focus@2x.png +0 -0
- melage/resource/theme/rc/radio_unchecked_pressed.png +0 -0
- melage/resource/theme/rc/radio_unchecked_pressed@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_disabled.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_disabled@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_focus.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_focus@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_pressed.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_pressed@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_disabled.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_disabled@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_focus.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_focus@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_pressed.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_pressed@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_disabled.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_disabled@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_focus.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_focus@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_pressed.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_pressed@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_disabled.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_disabled@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_focus.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_focus@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_pressed.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_pressed@2x.png +0 -0
- melage/resource/theme/rc/transparent.png +0 -0
- melage/resource/theme/rc/transparent@2x.png +0 -0
- melage/resource/theme/rc/transparent_disabled.png +0 -0
- melage/resource/theme/rc/transparent_disabled@2x.png +0 -0
- melage/resource/theme/rc/transparent_focus.png +0 -0
- melage/resource/theme/rc/transparent_focus@2x.png +0 -0
- melage/resource/theme/rc/transparent_pressed.png +0 -0
- melage/resource/theme/rc/transparent_pressed@2x.png +0 -0
- melage/resource/theme/rc/window_close.png +0 -0
- melage/resource/theme/rc/window_close@2x.png +0 -0
- melage/resource/theme/rc/window_close_disabled.png +0 -0
- melage/resource/theme/rc/window_close_disabled@2x.png +0 -0
- melage/resource/theme/rc/window_close_focus.png +0 -0
- melage/resource/theme/rc/window_close_focus@2x.png +0 -0
- melage/resource/theme/rc/window_close_pressed.png +0 -0
- melage/resource/theme/rc/window_close_pressed@2x.png +0 -0
- melage/resource/theme/rc/window_grip.png +0 -0
- melage/resource/theme/rc/window_grip@2x.png +0 -0
- melage/resource/theme/rc/window_grip_disabled.png +0 -0
- melage/resource/theme/rc/window_grip_disabled@2x.png +0 -0
- melage/resource/theme/rc/window_grip_focus.png +0 -0
- melage/resource/theme/rc/window_grip_focus@2x.png +0 -0
- melage/resource/theme/rc/window_grip_pressed.png +0 -0
- melage/resource/theme/rc/window_grip_pressed@2x.png +0 -0
- melage/resource/theme/rc/window_minimize.png +0 -0
- melage/resource/theme/rc/window_minimize@2x.png +0 -0
- melage/resource/theme/rc/window_minimize_disabled.png +0 -0
- melage/resource/theme/rc/window_minimize_disabled@2x.png +0 -0
- melage/resource/theme/rc/window_minimize_focus.png +0 -0
- melage/resource/theme/rc/window_minimize_focus@2x.png +0 -0
- melage/resource/theme/rc/window_minimize_pressed.png +0 -0
- melage/resource/theme/rc/window_minimize_pressed@2x.png +0 -0
- melage/resource/theme/rc/window_undock.png +0 -0
- melage/resource/theme/rc/window_undock@2x.png +0 -0
- melage/resource/theme/rc/window_undock_disabled.png +0 -0
- melage/resource/theme/rc/window_undock_disabled@2x.png +0 -0
- melage/resource/theme/rc/window_undock_focus.png +0 -0
- melage/resource/theme/rc/window_undock_focus@2x.png +0 -0
- melage/resource/theme/rc/window_undock_pressed.png +0 -0
- melage/resource/theme/rc/window_undock_pressed@2x.png +0 -0
- melage/resource/theme/style.qss +2223 -0
- melage/resource/tract.png +0 -0
- melage/resource/view1.png +0 -0
- melage/resource/view1_eco.png +0 -0
- melage/resource/view1_mri.png +0 -0
- melage/resource/view1_seg.png +0 -0
- melage/resource/view2.png +0 -0
- melage/resource/view2_seg.png +0 -0
- melage/resource/w.png +0 -0
- melage/resource/zoom_in.png +0 -0
- melage/resource/zoom_inFaded.png +0 -0
- melage/resource/zoom_out.png +0 -0
- melage/resource/zoom_outFaded.png +0 -0
- melage/some_notes.txt +3 -0
- melage/utils/DispalyIm.py +2788 -0
- melage/utils/GMM.py +720 -0
- melage/utils/Shaders_120.py +257 -0
- melage/utils/Shaders_330.py +314 -0
- melage/utils/Shaders_bu.py +314 -0
- melage/utils/__init__0.py +7 -0
- melage/utils/brain_extraction_helper.py +234 -0
- melage/utils/custom_QScrollBar.py +61 -0
- melage/utils/glScientific.py +1554 -0
- melage/utils/glScientific_bc.py +1585 -0
- melage/utils/readData.py +1061 -0
- melage/utils/registration.py +512 -0
- melage/utils/source_folder.py +18 -0
- melage/utils/utils.py +3808 -0
- melage/version.txt +1 -0
- melage/widgets/ApplyMask.py +212 -0
- melage/widgets/ChangeSystem.py +152 -0
- melage/widgets/DeepLModels/InfantSegment/Unet.py +464 -0
- melage/widgets/DeepLModels/NPP/dataset/mri_dataset_affine.py +149 -0
- melage/widgets/DeepLModels/NPP/models/checkpoints/npp_v1.pth.py +0 -0
- melage/widgets/DeepLModels/NPP/models/losses.py +146 -0
- melage/widgets/DeepLModels/NPP/models/model.py +272 -0
- melage/widgets/DeepLModels/NPP/models/utils.py +303 -0
- melage/widgets/DeepLModels/NPP/npp.py +116 -0
- melage/widgets/DeepLModels/NPP/requirements.txt +8 -0
- melage/widgets/DeepLModels/NPP/train/train.py +116 -0
- melage/widgets/DeepLModels/Unet3DAtt.py +657 -0
- melage/widgets/DeepLModels/Unet3D_basic.py +648 -0
- melage/widgets/DeepLModels/new_unet.py +652 -0
- melage/widgets/DeepLModels/new_unet_old.py +639 -0
- melage/widgets/DeepLModels/new_unet_old2.py +658 -0
- melage/widgets/HistImage.py +153 -0
- melage/widgets/ImageThresholding.py +222 -0
- melage/widgets/MaskOperations.py +147 -0
- melage/widgets/N4Dialog.py +241 -0
- melage/widgets/Segmentation/FCM.py +1553 -0
- melage/widgets/Segmentation/__init__.py +588 -0
- melage/widgets/Segmentation/utils.py +417 -0
- melage/widgets/SemiAutoSeg.py +666 -0
- melage/widgets/Synthstrip.py +141 -0
- melage/widgets/__init__0.py +5 -0
- melage/widgets/about.py +246 -0
- melage/widgets/activation.py +437 -0
- melage/widgets/activator.py +147 -0
- melage/widgets/be_dl.py +409 -0
- melage/widgets/be_dl_unet3d.py +441 -0
- melage/widgets/brain_extraction.py +855 -0
- melage/widgets/brain_extraction_dl.py +887 -0
- melage/widgets/brain_extraction_dl_bu.py +869 -0
- melage/widgets/colorwidget.py +100 -0
- melage/widgets/dockWidgets.py +2005 -0
- melage/widgets/enhanceImWidget.py +109 -0
- melage/widgets/fileDialog_widget.py +275 -0
- melage/widgets/iminfo.py +346 -0
- melage/widgets/mainwindow_widget.py +6775 -0
- melage/widgets/melageAbout.py +123 -0
- melage/widgets/openglWidgets.py +556 -0
- melage/widgets/registrationWidget.py +342 -0
- melage/widgets/repeat_widget.py +74 -0
- melage/widgets/screenshot_widget.py +138 -0
- melage/widgets/settings_widget.py +77 -0
- melage/widgets/tranformationWidget.py +275 -0
- melage-0.0.65.dist-info/METADATA +742 -0
- melage-0.0.65.dist-info/RECORD +501 -0
- melage-0.0.65.dist-info/WHEEL +5 -0
- melage-0.0.65.dist-info/entry_points.txt +2 -0
- melage-0.0.65.dist-info/top_level.txt +1 -0
melage/__init__.py
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# -*- coding: utf-8 -*-
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__author__='Bahram Jafraste'
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from types import ModuleType
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import sys
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import os
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# Get the current directory
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current_directory = os.path.abspath(os.path.dirname(__file__))
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# Add the current directory to the Python path
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sys.path.append(current_directory)
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from . import utils
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from . import widgets
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from . import widgets
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from .cli import main
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__version__ = '0.1.1'
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melage/cli.py
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from OpenGL.GL import *
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from OpenGL import GL
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from PyQt5 import QtCore
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from .Transform3D import Transform3D
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import sys
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if sys.version_info[0] == 3:
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basestring = str
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xrange = range
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else:
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import __builtin__
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basestring = __builtin__.basestring
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xrange = __builtin__.xrange
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GLOptions = {
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'opaque': {
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GL_DEPTH_TEST: True,
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GL_BLEND: False,
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GL_ALPHA_TEST: False,
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GL_CULL_FACE: False,
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},
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'translucent': {
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GL_DEPTH_TEST: True,
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GL_BLEND: True,
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GL_ALPHA_TEST: False,
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GL_CULL_FACE: False,
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'glBlendFunc': (GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA),
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},
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'additive': {
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GL_DEPTH_TEST: False,
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GL_BLEND: True,
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GL_ALPHA_TEST: False,
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GL_CULL_FACE: False,
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'glBlendFunc': (GL_SRC_ALPHA, GL_ONE),
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},
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}
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__AUTHOR__ = 'Bahram Jafrasteh'
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"""
|
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44
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Inspiration from pyqtgraph https://github.com/pyqtgraph/pyqtgraph
|
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"""
|
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46
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|
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class GLGraphicsItem(QtCore.QObject):
|
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_nextId = 0
|
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49
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|
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50
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def __init__(self, parentItem=None):
|
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QtCore.QObject.__init__(self)
|
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self._id = GLGraphicsItem._nextId
|
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GLGraphicsItem._nextId += 1
|
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self.__parent = None
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self.__view = None
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self.__children = set()
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self.__transform = Transform3D()
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self.__visible = True
|
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self.setParentItem(parentItem)
|
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self.setDepthValue(0)
|
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self.__glOpts = {}
|
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63
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|
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64
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def setParentItem(self, item):
|
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"""Set this item's parent in the scenegraph hierarchy."""
|
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if self.__parent is not None:
|
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self.__parent.__children.remove(self)
|
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if item is not None:
|
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item.__children.add(self)
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self.__parent = item
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|
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if self.__parent is not None and self.view() is not self.__parent.view():
|
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if self.view() is not None:
|
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self.view().removeItem(self)
|
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self.__parent.view().addItem(self)
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def setGLOptions(self, opts):
|
|
78
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"""
|
|
79
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|
|
80
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"""
|
|
81
|
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if isinstance(opts, basestring):
|
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opts = GLOptions[opts]
|
|
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self.__glOpts = opts.copy()
|
|
84
|
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self.update()
|
|
85
|
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|
|
86
|
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def updateGLOptions(self, opts):
|
|
87
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"""
|
|
88
|
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Modify the OpenGL state options to use immediately before drawing this item.
|
|
89
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*opts* must be a dictionary as specified by setGLOptions.
|
|
90
|
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Values may also be None, in which case the key will be ignored.
|
|
91
|
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"""
|
|
92
|
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self.__glOpts.update(opts)
|
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93
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|
|
94
|
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|
|
95
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def parentItem(self):
|
|
96
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"""Return a this item's parent in the scenegraph hierarchy."""
|
|
97
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return self.__parent
|
|
98
|
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|
|
99
|
+
def childItems(self):
|
|
100
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"""Return a list of this item's children in the scenegraph hierarchy."""
|
|
101
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return list(self.__children)
|
|
102
|
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|
|
103
|
+
def _setView(self, v):
|
|
104
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self.__view = v
|
|
105
|
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|
|
106
|
+
def view(self):
|
|
107
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return self.__view
|
|
108
|
+
|
|
109
|
+
def setDepthValue(self, value):
|
|
110
|
+
"""
|
|
111
|
+
Sets the depth value of this item. Default is 0.
|
|
112
|
+
This controls the order in which items are drawn--those with a greater depth value will be drawn later.
|
|
113
|
+
Items with negative depth values are drawn before their parent.
|
|
114
|
+
(This is analogous to QGraphicsItem.zValue)
|
|
115
|
+
The depthValue does NOT affect the position of the item or the values it imparts to the GL depth buffer.
|
|
116
|
+
"""
|
|
117
|
+
self.__depthValue = value
|
|
118
|
+
|
|
119
|
+
def depthValue(self):
|
|
120
|
+
"""Return the depth value of this item. See setDepthValue for more information."""
|
|
121
|
+
return self.__depthValue
|
|
122
|
+
|
|
123
|
+
def setTransform(self, tr):
|
|
124
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+
"""Set the local transform for this object.
|
|
125
|
+
Must be a :class:`Transform3D <pyqtgraph.Transform3D>` instance. This transform
|
|
126
|
+
determines how the local coordinate system of the item is mapped to the coordinate
|
|
127
|
+
system of its parent."""
|
|
128
|
+
self.__transform = Transform3D(tr)
|
|
129
|
+
self.update()
|
|
130
|
+
|
|
131
|
+
def resetTransform(self):
|
|
132
|
+
"""Reset this item's transform to an identity transformation."""
|
|
133
|
+
self.__transform.setToIdentity()
|
|
134
|
+
self.update()
|
|
135
|
+
|
|
136
|
+
def applyTransform(self, tr, local):
|
|
137
|
+
"""
|
|
138
|
+
Multiply this object's transform by *tr*.
|
|
139
|
+
If local is True, then *tr* is multiplied on the right of the current transform::
|
|
140
|
+
|
|
141
|
+
newTransform = transform * tr
|
|
142
|
+
|
|
143
|
+
If local is False, then *tr* is instead multiplied on the left::
|
|
144
|
+
|
|
145
|
+
newTransform = tr * transform
|
|
146
|
+
"""
|
|
147
|
+
if local:
|
|
148
|
+
self.setTransform(self.transform() * tr)
|
|
149
|
+
else:
|
|
150
|
+
self.setTransform(tr * self.transform())
|
|
151
|
+
|
|
152
|
+
def transform(self):
|
|
153
|
+
"""Return this item's transform object."""
|
|
154
|
+
return self.__transform
|
|
155
|
+
|
|
156
|
+
def viewTransform(self):
|
|
157
|
+
"""Return the transform mapping this item's local coordinate system to the
|
|
158
|
+
view coordinate system."""
|
|
159
|
+
tr = self.__transform
|
|
160
|
+
p = self
|
|
161
|
+
while True:
|
|
162
|
+
p = p.parentItem()
|
|
163
|
+
if p is None:
|
|
164
|
+
break
|
|
165
|
+
tr = p.transform() * tr
|
|
166
|
+
return Transform3D(tr)
|
|
167
|
+
|
|
168
|
+
def translate(self, dx, dy, dz, local=False):
|
|
169
|
+
"""
|
|
170
|
+
Translate the object by (*dx*, *dy*, *dz*) in its parent's coordinate system.
|
|
171
|
+
If *local* is True, then translation takes place in local coordinates.
|
|
172
|
+
"""
|
|
173
|
+
tr = Transform3D()
|
|
174
|
+
tr.translate(dx, dy, dz)
|
|
175
|
+
self.applyTransform(tr, local=local)
|
|
176
|
+
|
|
177
|
+
def rotate(self, angle, x, y, z, local=False):
|
|
178
|
+
"""
|
|
179
|
+
Rotate the object around the axis specified by (x,y,z).
|
|
180
|
+
*angle* is in degrees.
|
|
181
|
+
|
|
182
|
+
"""
|
|
183
|
+
tr = Transform3D()
|
|
184
|
+
tr.rotate(angle, x, y, z)
|
|
185
|
+
self.applyTransform(tr, local=local)
|
|
186
|
+
|
|
187
|
+
def scale(self, x, y, z, local=True):
|
|
188
|
+
"""
|
|
189
|
+
Scale the object by (*dx*, *dy*, *dz*) in its local coordinate system.
|
|
190
|
+
If *local* is False, then scale takes place in the parent's coordinates.
|
|
191
|
+
"""
|
|
192
|
+
tr = Transform3D()
|
|
193
|
+
tr.scale(x, y, z)
|
|
194
|
+
self.applyTransform(tr, local=local)
|
|
195
|
+
|
|
196
|
+
|
|
197
|
+
def hide(self):
|
|
198
|
+
"""Hide this item.
|
|
199
|
+
This is equivalent to setVisible(False)."""
|
|
200
|
+
self.setVisible(False)
|
|
201
|
+
|
|
202
|
+
def show(self):
|
|
203
|
+
"""Make this item visible if it was previously hidden.
|
|
204
|
+
This is equivalent to setVisible(True)."""
|
|
205
|
+
self.setVisible(True)
|
|
206
|
+
|
|
207
|
+
def setVisible(self, vis):
|
|
208
|
+
"""Set the visibility of this item."""
|
|
209
|
+
self.__visible = vis
|
|
210
|
+
self.update()
|
|
211
|
+
|
|
212
|
+
def visible(self):
|
|
213
|
+
"""Return True if the item is currently set to be visible.
|
|
214
|
+
Note that this does not guarantee that the item actually appears in the
|
|
215
|
+
view, as it may be obscured or outside of the current view area."""
|
|
216
|
+
return self.__visible
|
|
217
|
+
|
|
218
|
+
|
|
219
|
+
def initializeGL(self):
|
|
220
|
+
"""
|
|
221
|
+
Called after an item is added to a GLViewWidget.
|
|
222
|
+
The widget's GL context is made current before this method is called.
|
|
223
|
+
(So this would be an appropriate time to generate lists, upload textures, etc.)
|
|
224
|
+
"""
|
|
225
|
+
pass
|
|
226
|
+
|
|
227
|
+
def setupGLState(self):
|
|
228
|
+
"""
|
|
229
|
+
This method is responsible for preparing the GL state options needed to render
|
|
230
|
+
this item (blending, depth testing, etc). The method is called immediately before painting the item.
|
|
231
|
+
"""
|
|
232
|
+
for k,v in self.__glOpts.items():
|
|
233
|
+
if v is None:
|
|
234
|
+
continue
|
|
235
|
+
if isinstance(k, basestring):
|
|
236
|
+
func = getattr(GL, k)
|
|
237
|
+
func(*v)
|
|
238
|
+
else:
|
|
239
|
+
if v is True:
|
|
240
|
+
glEnable(k)
|
|
241
|
+
else:
|
|
242
|
+
glDisable(k)
|
|
243
|
+
|
|
244
|
+
def paint(self):
|
|
245
|
+
"""
|
|
246
|
+
Called by the GLViewWidget to draw this item.
|
|
247
|
+
It is the responsibility of the item to set up its own modelview matrix,
|
|
248
|
+
but the caller will take care of pushing/popping.
|
|
249
|
+
"""
|
|
250
|
+
#glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT | GL_ACCUM_BUFFER_BIT)
|
|
251
|
+
#glClearColor(0, 0, 0, 0)
|
|
252
|
+
self.setupGLState()
|
|
253
|
+
|
|
254
|
+
def update(self):
|
|
255
|
+
"""
|
|
256
|
+
Indicates that this item needs to be redrawn, and schedules an update
|
|
257
|
+
with the view it is displayed in.
|
|
258
|
+
"""
|
|
259
|
+
v = self.view()
|
|
260
|
+
if v is None:
|
|
261
|
+
return
|
|
262
|
+
v.update()
|
|
263
|
+
|
|
264
|
+
def mapToParent(self, point):
|
|
265
|
+
tr = self.transform()
|
|
266
|
+
if tr is None:
|
|
267
|
+
return point
|
|
268
|
+
return tr.map(point)
|
|
269
|
+
|
|
270
|
+
def mapFromParent(self, point):
|
|
271
|
+
tr = self.transform()
|
|
272
|
+
if tr is None:
|
|
273
|
+
return point
|
|
274
|
+
return tr.inverted()[0].map(point)
|
|
275
|
+
|
|
276
|
+
def mapToView(self, point):
|
|
277
|
+
tr = self.viewTransform()
|
|
278
|
+
if tr is None:
|
|
279
|
+
return point
|
|
280
|
+
return tr.map(point)
|
|
281
|
+
|
|
282
|
+
def mapFromView(self, point):
|
|
283
|
+
tr = self.viewTransform()
|
|
284
|
+
if tr is None:
|
|
285
|
+
return point
|
|
286
|
+
return tr.inverted()[0].map(point)
|