melage 0.0.65__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- melage/__init__.py +16 -0
- melage/cli.py +4 -0
- melage/graphics/GLGraphicsItem.py +286 -0
- melage/graphics/GLViewWidget.py +595 -0
- melage/graphics/Transform3D.py +55 -0
- melage/graphics/__init__.py +8 -0
- melage/graphics/functions.py +101 -0
- melage/graphics/items/GLAxisItem.py +149 -0
- melage/graphics/items/GLGridItem.py +178 -0
- melage/graphics/items/GLPolygonItem.py +77 -0
- melage/graphics/items/GLScatterPlotItem.py +135 -0
- melage/graphics/items/GLVolumeItem.py +280 -0
- melage/graphics/items/GLVolumeItem_b.py +237 -0
- melage/graphics/items/__init__.py +0 -0
- melage/graphics/shaders.py +202 -0
- melage/main.py +270 -0
- melage/requirements22.txt +25 -0
- melage/requirements_old.txt +28 -0
- melage/resource/0circle.png +0 -0
- melage/resource/0circle_faded.png +0 -0
- melage/resource/3d.png +0 -0
- melage/resource/3d.psd +0 -0
- melage/resource/3dFaded.png +0 -0
- melage/resource/Eraser.png +0 -0
- melage/resource/EraserFaded.png +0 -0
- melage/resource/EraserX.png +0 -0
- melage/resource/EraserXFaded.png +0 -0
- melage/resource/Eraser_icon.svg +79 -0
- melage/resource/Hand.png +0 -0
- melage/resource/HandIcons_0.png +0 -0
- melage/resource/Hand_IX.png +0 -0
- melage/resource/Hand_IXFaded.png +0 -0
- melage/resource/Handsqueezed.png +0 -0
- melage/resource/Handwriting (copy).png +0 -0
- melage/resource/Handwriting.png +0 -0
- melage/resource/HandwritingMinus.png +0 -0
- melage/resource/HandwritingMinusX.png +0 -0
- melage/resource/HandwritingPlus.png +0 -0
- melage/resource/HandwritingPlusX.png +0 -0
- melage/resource/Move_icon.svg +8 -0
- melage/resource/PngItem_2422924.png +0 -0
- melage/resource/about.png +0 -0
- melage/resource/about_logo.png +0 -0
- melage/resource/about_logo0.png +0 -0
- melage/resource/action_check.png +0 -0
- melage/resource/action_check_OFF.png +0 -0
- melage/resource/arrow).png +0 -0
- melage/resource/arrow.png +0 -0
- melage/resource/arrowFaded.png +0 -0
- melage/resource/arrow_org.png +0 -0
- melage/resource/arrow_org.png.png +0 -0
- melage/resource/arrows.png +0 -0
- melage/resource/authors.mp4 +0 -0
- melage/resource/box.png +0 -0
- melage/resource/check-image-icon-0.jpg +0 -0
- melage/resource/circle.png +0 -0
- melage/resource/circle_faded.png +0 -0
- melage/resource/circle_or.png +0 -0
- melage/resource/close.png +0 -0
- melage/resource/close_bg.png +0 -0
- melage/resource/color/Simple.txt +18 -0
- melage/resource/color/Tissue.txt +24 -0
- melage/resource/color/Tissue12.txt +27 -0
- melage/resource/color/albert_LUT.txt +102 -0
- melage/resource/color/mcrib_LUT.txt +102 -0
- melage/resource/color/pediatric1.txt +29 -0
- melage/resource/color/pediatric1_old.txt +27 -0
- melage/resource/color/pediatric2.txt +87 -0
- melage/resource/color/pediatric3.txt +29 -0
- melage/resource/color/pediatrics (copy).csv +103 -0
- melage/resource/color/tissue_seg.txt +4 -0
- melage/resource/contour.png +0 -0
- melage/resource/contour.svg +2 -0
- melage/resource/contourFaded.png +0 -0
- melage/resource/contourX.png +0 -0
- melage/resource/contourXFaded.png +0 -0
- melage/resource/dti.png +0 -0
- melage/resource/dti0.png +0 -0
- melage/resource/dti222.png +0 -0
- melage/resource/dti_or.png +0 -0
- melage/resource/eco.png +0 -0
- melage/resource/eco22.png +0 -0
- melage/resource/eco_old.png +0 -0
- melage/resource/eco_or.png +0 -0
- melage/resource/eco_or2.png +0 -0
- melage/resource/eco_seg.png +0 -0
- melage/resource/eco_seg_old.png +0 -0
- melage/resource/export.png +0 -0
- melage/resource/hand-grab-icon-10.jpg +0 -0
- melage/resource/hand-grab-icon-25.jpg +0 -0
- melage/resource/info.png +0 -0
- melage/resource/line.png +0 -0
- melage/resource/linefaded.png +0 -0
- melage/resource/load.png +0 -0
- melage/resource/main.ico +0 -0
- melage/resource/manual_images/3D_rightc.png +0 -0
- melage/resource/manual_images/3D_rightc_goto.png +0 -0
- melage/resource/manual_images/3D_rightc_paint.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_draw1.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_draw2.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render2.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render3.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render4.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render5.png +0 -0
- melage/resource/manual_images/3D_rightc_paint_render6.png +0 -0
- melage/resource/manual_images/3D_rightc_seg.png +0 -0
- melage/resource/manual_images/exit_toolbar.png +0 -0
- melage/resource/manual_images/load_image_file.png +0 -0
- melage/resource/manual_images/load_image_file_openp.png +0 -0
- melage/resource/manual_images/main_page.png +0 -0
- melage/resource/manual_images/menu_file.png +0 -0
- melage/resource/manual_images/menu_file_export.png +0 -0
- melage/resource/manual_images/menu_file_import.png +0 -0
- melage/resource/manual_images/menu_file_settings.png +0 -0
- melage/resource/manual_images/menu_file_ss.png +0 -0
- melage/resource/manual_images/open_save_load.png +0 -0
- melage/resource/manual_images/panning_toolbar.png +0 -0
- melage/resource/manual_images/segmentation_toolbar.png +0 -0
- melage/resource/manual_images/tab_mri.png +0 -0
- melage/resource/manual_images/tab_us.png +0 -0
- melage/resource/manual_images/tabs.png +0 -0
- melage/resource/manual_images/toolbar_tools.png +0 -0
- melage/resource/manual_images/tools_basic.png +0 -0
- melage/resource/manual_images/tools_bet.png +0 -0
- melage/resource/manual_images/tools_cs.png +0 -0
- melage/resource/manual_images/tools_deepbet.png +0 -0
- melage/resource/manual_images/tools_imageinfo.png +0 -0
- melage/resource/manual_images/tools_maskO.png +0 -0
- melage/resource/manual_images/tools_masking.png +0 -0
- melage/resource/manual_images/tools_n4b.png +0 -0
- melage/resource/manual_images/tools_resize.png +0 -0
- melage/resource/manual_images/tools_ruler.png +0 -0
- melage/resource/manual_images/tools_seg.png +0 -0
- melage/resource/manual_images/tools_threshold.png +0 -0
- melage/resource/manual_images/tools_tools.png +0 -0
- melage/resource/manual_images/widget_color.png +0 -0
- melage/resource/manual_images/widget_color_add.png +0 -0
- melage/resource/manual_images/widget_color_add2.png +0 -0
- melage/resource/manual_images/widget_color_additional.png +0 -0
- melage/resource/manual_images/widget_images.png +0 -0
- melage/resource/manual_images/widget_images2.png +0 -0
- melage/resource/manual_images/widget_images3.png +0 -0
- melage/resource/manual_images/widget_marker.png +0 -0
- melage/resource/manual_images/widget_mri.png +0 -0
- melage/resource/manual_images/widget_mri2.png +0 -0
- melage/resource/manual_images/widget_segintensity.png +0 -0
- melage/resource/manual_images/widget_tab_mutualview.png +0 -0
- melage/resource/manual_images/widget_tab_mutualview2.png +0 -0
- melage/resource/manual_images/widget_table.png +0 -0
- melage/resource/manual_images/widget_table2.png +0 -0
- melage/resource/manual_images/widget_us.png +0 -0
- melage/resource/melage_top.ico +0 -0
- melage/resource/melage_top.png +0 -0
- melage/resource/melage_top0.png +0 -0
- melage/resource/melage_top1.png +0 -0
- melage/resource/melage_top4.png +0 -0
- melage/resource/mri (copy).png +0 -0
- melage/resource/mri.png +0 -0
- melage/resource/mri0.png +0 -0
- melage/resource/mri000.png +0 -0
- melage/resource/mri22.png +0 -0
- melage/resource/mri_big.png +0 -0
- melage/resource/mri_old.png +0 -0
- melage/resource/mri_seg.png +0 -0
- melage/resource/mri_seg_old.png +0 -0
- melage/resource/new.png +0 -0
- melage/resource/open.png +0 -0
- melage/resource/open2.png +0 -0
- melage/resource/pan.png +0 -0
- melage/resource/pencil.png +0 -0
- melage/resource/pencilFaded.png +0 -0
- melage/resource/points.png +0 -0
- melage/resource/pointsFaded.png +0 -0
- melage/resource/rotate.png +0 -0
- melage/resource/ruler.png +0 -0
- melage/resource/rulerFaded.png +0 -0
- melage/resource/s.png +0 -0
- melage/resource/s.psd +0 -0
- melage/resource/save.png +0 -0
- melage/resource/saveas.png +0 -0
- melage/resource/seg_mri.png +0 -0
- melage/resource/seg_mri2.png +0 -0
- melage/resource/settings.png +0 -0
- melage/resource/synch.png +0 -0
- melage/resource/synchFaded.png +0 -0
- melage/resource/theme/rc/.keep +1 -0
- melage/resource/theme/rc/arrow_down.png +0 -0
- melage/resource/theme/rc/arrow_down@2x.png +0 -0
- melage/resource/theme/rc/arrow_down_disabled.png +0 -0
- melage/resource/theme/rc/arrow_down_disabled@2x.png +0 -0
- melage/resource/theme/rc/arrow_down_focus.png +0 -0
- melage/resource/theme/rc/arrow_down_focus@2x.png +0 -0
- melage/resource/theme/rc/arrow_down_pressed.png +0 -0
- melage/resource/theme/rc/arrow_down_pressed@2x.png +0 -0
- melage/resource/theme/rc/arrow_left.png +0 -0
- melage/resource/theme/rc/arrow_left@2x.png +0 -0
- melage/resource/theme/rc/arrow_left_disabled.png +0 -0
- melage/resource/theme/rc/arrow_left_disabled@2x.png +0 -0
- melage/resource/theme/rc/arrow_left_focus.png +0 -0
- melage/resource/theme/rc/arrow_left_focus@2x.png +0 -0
- melage/resource/theme/rc/arrow_left_pressed.png +0 -0
- melage/resource/theme/rc/arrow_left_pressed@2x.png +0 -0
- melage/resource/theme/rc/arrow_right.png +0 -0
- melage/resource/theme/rc/arrow_right@2x.png +0 -0
- melage/resource/theme/rc/arrow_right_disabled.png +0 -0
- melage/resource/theme/rc/arrow_right_disabled@2x.png +0 -0
- melage/resource/theme/rc/arrow_right_focus.png +0 -0
- melage/resource/theme/rc/arrow_right_focus@2x.png +0 -0
- melage/resource/theme/rc/arrow_right_pressed.png +0 -0
- melage/resource/theme/rc/arrow_right_pressed@2x.png +0 -0
- melage/resource/theme/rc/arrow_up.png +0 -0
- melage/resource/theme/rc/arrow_up@2x.png +0 -0
- melage/resource/theme/rc/arrow_up_disabled.png +0 -0
- melage/resource/theme/rc/arrow_up_disabled@2x.png +0 -0
- melage/resource/theme/rc/arrow_up_focus.png +0 -0
- melage/resource/theme/rc/arrow_up_focus@2x.png +0 -0
- melage/resource/theme/rc/arrow_up_pressed.png +0 -0
- melage/resource/theme/rc/arrow_up_pressed@2x.png +0 -0
- melage/resource/theme/rc/base_icon.png +0 -0
- melage/resource/theme/rc/base_icon@2x.png +0 -0
- melage/resource/theme/rc/base_icon_disabled.png +0 -0
- melage/resource/theme/rc/base_icon_disabled@2x.png +0 -0
- melage/resource/theme/rc/base_icon_focus.png +0 -0
- melage/resource/theme/rc/base_icon_focus@2x.png +0 -0
- melage/resource/theme/rc/base_icon_pressed.png +0 -0
- melage/resource/theme/rc/base_icon_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_closed.png +0 -0
- melage/resource/theme/rc/branch_closed@2x.png +0 -0
- melage/resource/theme/rc/branch_closed_disabled.png +0 -0
- melage/resource/theme/rc/branch_closed_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_closed_focus.png +0 -0
- melage/resource/theme/rc/branch_closed_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_closed_pressed.png +0 -0
- melage/resource/theme/rc/branch_closed_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_end.png +0 -0
- melage/resource/theme/rc/branch_end@2x.png +0 -0
- melage/resource/theme/rc/branch_end_disabled.png +0 -0
- melage/resource/theme/rc/branch_end_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_end_focus.png +0 -0
- melage/resource/theme/rc/branch_end_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_end_pressed.png +0 -0
- melage/resource/theme/rc/branch_end_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_line.png +0 -0
- melage/resource/theme/rc/branch_line@2x.png +0 -0
- melage/resource/theme/rc/branch_line_disabled.png +0 -0
- melage/resource/theme/rc/branch_line_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_line_focus.png +0 -0
- melage/resource/theme/rc/branch_line_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_line_pressed.png +0 -0
- melage/resource/theme/rc/branch_line_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_more.png +0 -0
- melage/resource/theme/rc/branch_more@2x.png +0 -0
- melage/resource/theme/rc/branch_more_disabled.png +0 -0
- melage/resource/theme/rc/branch_more_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_more_focus.png +0 -0
- melage/resource/theme/rc/branch_more_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_more_pressed.png +0 -0
- melage/resource/theme/rc/branch_more_pressed@2x.png +0 -0
- melage/resource/theme/rc/branch_open.png +0 -0
- melage/resource/theme/rc/branch_open@2x.png +0 -0
- melage/resource/theme/rc/branch_open_disabled.png +0 -0
- melage/resource/theme/rc/branch_open_disabled@2x.png +0 -0
- melage/resource/theme/rc/branch_open_focus.png +0 -0
- melage/resource/theme/rc/branch_open_focus@2x.png +0 -0
- melage/resource/theme/rc/branch_open_pressed.png +0 -0
- melage/resource/theme/rc/branch_open_pressed@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked.png +0 -0
- melage/resource/theme/rc/checkbox_checked0.png +0 -0
- melage/resource/theme/rc/checkbox_checked@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_checked@2x000.png.png +0 -0
- melage/resource/theme/rc/checkbox_checked_disabled.png +0 -0
- melage/resource/theme/rc/checkbox_checked_disabled0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_disabled@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked_disabled@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_focus.png +0 -0
- melage/resource/theme/rc/checkbox_checked_focus0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_focus@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked_focus@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_pressed.png +0 -0
- melage/resource/theme/rc/checkbox_checked_pressed0.png +0 -0
- melage/resource/theme/rc/checkbox_checked_pressed@2x.png +0 -0
- melage/resource/theme/rc/checkbox_checked_pressed@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate@2x.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_disabled.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_disabled@2x.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_focus.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_focus@2x.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_pressed.png +0 -0
- melage/resource/theme/rc/checkbox_indeterminate_pressed@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked@2x00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_disabled@2x00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_focus@2x00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed00.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed@2x.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed@2x0.png +0 -0
- melage/resource/theme/rc/checkbox_unchecked_pressed@2x00.png +0 -0
- melage/resource/theme/rc/line_horizontal.png +0 -0
- melage/resource/theme/rc/line_horizontal@2x.png +0 -0
- melage/resource/theme/rc/line_horizontal_disabled.png +0 -0
- melage/resource/theme/rc/line_horizontal_disabled@2x.png +0 -0
- melage/resource/theme/rc/line_horizontal_focus.png +0 -0
- melage/resource/theme/rc/line_horizontal_focus@2x.png +0 -0
- melage/resource/theme/rc/line_horizontal_pressed.png +0 -0
- melage/resource/theme/rc/line_horizontal_pressed@2x.png +0 -0
- melage/resource/theme/rc/line_vertical.png +0 -0
- melage/resource/theme/rc/line_vertical@2x.png +0 -0
- melage/resource/theme/rc/line_vertical_disabled.png +0 -0
- melage/resource/theme/rc/line_vertical_disabled@2x.png +0 -0
- melage/resource/theme/rc/line_vertical_focus.png +0 -0
- melage/resource/theme/rc/line_vertical_focus@2x.png +0 -0
- melage/resource/theme/rc/line_vertical_pressed.png +0 -0
- melage/resource/theme/rc/line_vertical_pressed@2x.png +0 -0
- melage/resource/theme/rc/radio_checked.png +0 -0
- melage/resource/theme/rc/radio_checked@2x.png +0 -0
- melage/resource/theme/rc/radio_checked_disabled.png +0 -0
- melage/resource/theme/rc/radio_checked_disabled@2x.png +0 -0
- melage/resource/theme/rc/radio_checked_focus.png +0 -0
- melage/resource/theme/rc/radio_checked_focus@2x.png +0 -0
- melage/resource/theme/rc/radio_checked_pressed.png +0 -0
- melage/resource/theme/rc/radio_checked_pressed@2x.png +0 -0
- melage/resource/theme/rc/radio_unchecked.png +0 -0
- melage/resource/theme/rc/radio_unchecked@2x.png +0 -0
- melage/resource/theme/rc/radio_unchecked_disabled.png +0 -0
- melage/resource/theme/rc/radio_unchecked_disabled@2x.png +0 -0
- melage/resource/theme/rc/radio_unchecked_focus.png +0 -0
- melage/resource/theme/rc/radio_unchecked_focus@2x.png +0 -0
- melage/resource/theme/rc/radio_unchecked_pressed.png +0 -0
- melage/resource/theme/rc/radio_unchecked_pressed@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_disabled.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_disabled@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_focus.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_focus@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_pressed.png +0 -0
- melage/resource/theme/rc/toolbar_move_horizontal_pressed@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_disabled.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_disabled@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_focus.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_focus@2x.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_pressed.png +0 -0
- melage/resource/theme/rc/toolbar_move_vertical_pressed@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_disabled.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_disabled@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_focus.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_focus@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_pressed.png +0 -0
- melage/resource/theme/rc/toolbar_separator_horizontal_pressed@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_disabled.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_disabled@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_focus.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_focus@2x.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_pressed.png +0 -0
- melage/resource/theme/rc/toolbar_separator_vertical_pressed@2x.png +0 -0
- melage/resource/theme/rc/transparent.png +0 -0
- melage/resource/theme/rc/transparent@2x.png +0 -0
- melage/resource/theme/rc/transparent_disabled.png +0 -0
- melage/resource/theme/rc/transparent_disabled@2x.png +0 -0
- melage/resource/theme/rc/transparent_focus.png +0 -0
- melage/resource/theme/rc/transparent_focus@2x.png +0 -0
- melage/resource/theme/rc/transparent_pressed.png +0 -0
- melage/resource/theme/rc/transparent_pressed@2x.png +0 -0
- melage/resource/theme/rc/window_close.png +0 -0
- melage/resource/theme/rc/window_close@2x.png +0 -0
- melage/resource/theme/rc/window_close_disabled.png +0 -0
- melage/resource/theme/rc/window_close_disabled@2x.png +0 -0
- melage/resource/theme/rc/window_close_focus.png +0 -0
- melage/resource/theme/rc/window_close_focus@2x.png +0 -0
- melage/resource/theme/rc/window_close_pressed.png +0 -0
- melage/resource/theme/rc/window_close_pressed@2x.png +0 -0
- melage/resource/theme/rc/window_grip.png +0 -0
- melage/resource/theme/rc/window_grip@2x.png +0 -0
- melage/resource/theme/rc/window_grip_disabled.png +0 -0
- melage/resource/theme/rc/window_grip_disabled@2x.png +0 -0
- melage/resource/theme/rc/window_grip_focus.png +0 -0
- melage/resource/theme/rc/window_grip_focus@2x.png +0 -0
- melage/resource/theme/rc/window_grip_pressed.png +0 -0
- melage/resource/theme/rc/window_grip_pressed@2x.png +0 -0
- melage/resource/theme/rc/window_minimize.png +0 -0
- melage/resource/theme/rc/window_minimize@2x.png +0 -0
- melage/resource/theme/rc/window_minimize_disabled.png +0 -0
- melage/resource/theme/rc/window_minimize_disabled@2x.png +0 -0
- melage/resource/theme/rc/window_minimize_focus.png +0 -0
- melage/resource/theme/rc/window_minimize_focus@2x.png +0 -0
- melage/resource/theme/rc/window_minimize_pressed.png +0 -0
- melage/resource/theme/rc/window_minimize_pressed@2x.png +0 -0
- melage/resource/theme/rc/window_undock.png +0 -0
- melage/resource/theme/rc/window_undock@2x.png +0 -0
- melage/resource/theme/rc/window_undock_disabled.png +0 -0
- melage/resource/theme/rc/window_undock_disabled@2x.png +0 -0
- melage/resource/theme/rc/window_undock_focus.png +0 -0
- melage/resource/theme/rc/window_undock_focus@2x.png +0 -0
- melage/resource/theme/rc/window_undock_pressed.png +0 -0
- melage/resource/theme/rc/window_undock_pressed@2x.png +0 -0
- melage/resource/theme/style.qss +2223 -0
- melage/resource/tract.png +0 -0
- melage/resource/view1.png +0 -0
- melage/resource/view1_eco.png +0 -0
- melage/resource/view1_mri.png +0 -0
- melage/resource/view1_seg.png +0 -0
- melage/resource/view2.png +0 -0
- melage/resource/view2_seg.png +0 -0
- melage/resource/w.png +0 -0
- melage/resource/zoom_in.png +0 -0
- melage/resource/zoom_inFaded.png +0 -0
- melage/resource/zoom_out.png +0 -0
- melage/resource/zoom_outFaded.png +0 -0
- melage/some_notes.txt +3 -0
- melage/utils/DispalyIm.py +2788 -0
- melage/utils/GMM.py +720 -0
- melage/utils/Shaders_120.py +257 -0
- melage/utils/Shaders_330.py +314 -0
- melage/utils/Shaders_bu.py +314 -0
- melage/utils/__init__0.py +7 -0
- melage/utils/brain_extraction_helper.py +234 -0
- melage/utils/custom_QScrollBar.py +61 -0
- melage/utils/glScientific.py +1554 -0
- melage/utils/glScientific_bc.py +1585 -0
- melage/utils/readData.py +1061 -0
- melage/utils/registration.py +512 -0
- melage/utils/source_folder.py +18 -0
- melage/utils/utils.py +3808 -0
- melage/version.txt +1 -0
- melage/widgets/ApplyMask.py +212 -0
- melage/widgets/ChangeSystem.py +152 -0
- melage/widgets/DeepLModels/InfantSegment/Unet.py +464 -0
- melage/widgets/DeepLModels/NPP/dataset/mri_dataset_affine.py +149 -0
- melage/widgets/DeepLModels/NPP/models/checkpoints/npp_v1.pth.py +0 -0
- melage/widgets/DeepLModels/NPP/models/losses.py +146 -0
- melage/widgets/DeepLModels/NPP/models/model.py +272 -0
- melage/widgets/DeepLModels/NPP/models/utils.py +303 -0
- melage/widgets/DeepLModels/NPP/npp.py +116 -0
- melage/widgets/DeepLModels/NPP/requirements.txt +8 -0
- melage/widgets/DeepLModels/NPP/train/train.py +116 -0
- melage/widgets/DeepLModels/Unet3DAtt.py +657 -0
- melage/widgets/DeepLModels/Unet3D_basic.py +648 -0
- melage/widgets/DeepLModels/new_unet.py +652 -0
- melage/widgets/DeepLModels/new_unet_old.py +639 -0
- melage/widgets/DeepLModels/new_unet_old2.py +658 -0
- melage/widgets/HistImage.py +153 -0
- melage/widgets/ImageThresholding.py +222 -0
- melage/widgets/MaskOperations.py +147 -0
- melage/widgets/N4Dialog.py +241 -0
- melage/widgets/Segmentation/FCM.py +1553 -0
- melage/widgets/Segmentation/__init__.py +588 -0
- melage/widgets/Segmentation/utils.py +417 -0
- melage/widgets/SemiAutoSeg.py +666 -0
- melage/widgets/Synthstrip.py +141 -0
- melage/widgets/__init__0.py +5 -0
- melage/widgets/about.py +246 -0
- melage/widgets/activation.py +437 -0
- melage/widgets/activator.py +147 -0
- melage/widgets/be_dl.py +409 -0
- melage/widgets/be_dl_unet3d.py +441 -0
- melage/widgets/brain_extraction.py +855 -0
- melage/widgets/brain_extraction_dl.py +887 -0
- melage/widgets/brain_extraction_dl_bu.py +869 -0
- melage/widgets/colorwidget.py +100 -0
- melage/widgets/dockWidgets.py +2005 -0
- melage/widgets/enhanceImWidget.py +109 -0
- melage/widgets/fileDialog_widget.py +275 -0
- melage/widgets/iminfo.py +346 -0
- melage/widgets/mainwindow_widget.py +6775 -0
- melage/widgets/melageAbout.py +123 -0
- melage/widgets/openglWidgets.py +556 -0
- melage/widgets/registrationWidget.py +342 -0
- melage/widgets/repeat_widget.py +74 -0
- melage/widgets/screenshot_widget.py +138 -0
- melage/widgets/settings_widget.py +77 -0
- melage/widgets/tranformationWidget.py +275 -0
- melage-0.0.65.dist-info/METADATA +742 -0
- melage-0.0.65.dist-info/RECORD +501 -0
- melage-0.0.65.dist-info/WHEEL +5 -0
- melage-0.0.65.dist-info/entry_points.txt +2 -0
- melage-0.0.65.dist-info/top_level.txt +1 -0
|
@@ -0,0 +1,141 @@
|
|
|
1
|
+
"""
|
|
2
|
+
Synthstrip model
|
|
3
|
+
https://github.com/freesurfer/freesurfer/tree/dev/mri_synthstrip
|
|
4
|
+
"""
|
|
5
|
+
|
|
6
|
+
|
|
7
|
+
import torch
|
|
8
|
+
import torch.nn as nn
|
|
9
|
+
import numpy as np
|
|
10
|
+
|
|
11
|
+
class StripModel(nn.Module):
|
|
12
|
+
"""
|
|
13
|
+
https://github.com/freesurfer/freesurfer/tree/dev/mri_synthstrip
|
|
14
|
+
"""
|
|
15
|
+
def __init__(self,
|
|
16
|
+
nb_features=16,
|
|
17
|
+
nb_levels=7,
|
|
18
|
+
feat_mult=2,
|
|
19
|
+
max_features=64,
|
|
20
|
+
nb_conv_per_level=2,
|
|
21
|
+
max_pool=2,
|
|
22
|
+
return_mask=False):
|
|
23
|
+
|
|
24
|
+
super().__init__()
|
|
25
|
+
|
|
26
|
+
# dimensionality
|
|
27
|
+
ndims = 3
|
|
28
|
+
|
|
29
|
+
# build feature list automatically
|
|
30
|
+
if isinstance(nb_features, int):
|
|
31
|
+
if nb_levels is None:
|
|
32
|
+
raise ValueError('must provide unet nb_levels if nb_features is an integer')
|
|
33
|
+
feats = np.round(nb_features * feat_mult ** np.arange(nb_levels)).astype(int)
|
|
34
|
+
feats = np.clip(feats, 1, max_features)
|
|
35
|
+
nb_features = [
|
|
36
|
+
np.repeat(feats[:-1], nb_conv_per_level),
|
|
37
|
+
np.repeat(np.flip(feats), nb_conv_per_level)
|
|
38
|
+
]
|
|
39
|
+
elif nb_levels is not None:
|
|
40
|
+
raise ValueError('cannot use nb_levels if nb_features is not an integer')
|
|
41
|
+
|
|
42
|
+
# extract any surplus (full resolution) decoder convolutions
|
|
43
|
+
enc_nf, dec_nf = nb_features
|
|
44
|
+
nb_dec_convs = len(enc_nf)
|
|
45
|
+
final_convs = dec_nf[nb_dec_convs:]
|
|
46
|
+
dec_nf = dec_nf[:nb_dec_convs]
|
|
47
|
+
self.nb_levels = int(nb_dec_convs / nb_conv_per_level) + 1
|
|
48
|
+
|
|
49
|
+
if isinstance(max_pool, int):
|
|
50
|
+
max_pool = [max_pool] * self.nb_levels
|
|
51
|
+
|
|
52
|
+
# cache downsampling / upsampling operations
|
|
53
|
+
MaxPooling = getattr(nn, 'MaxPool%dd' % ndims)
|
|
54
|
+
self.pooling = [MaxPooling(s) for s in max_pool]
|
|
55
|
+
self.upsampling = [nn.Upsample(scale_factor=s, mode='nearest') for s in max_pool]
|
|
56
|
+
|
|
57
|
+
# configure encoder (down-sampling path)
|
|
58
|
+
prev_nf = 1
|
|
59
|
+
encoder_nfs = [prev_nf]
|
|
60
|
+
self.encoder = nn.ModuleList()
|
|
61
|
+
for level in range(self.nb_levels - 1):
|
|
62
|
+
convs = nn.ModuleList()
|
|
63
|
+
for conv in range(nb_conv_per_level):
|
|
64
|
+
nf = enc_nf[level * nb_conv_per_level + conv]
|
|
65
|
+
convs.append(ConvBlock(ndims, prev_nf, nf))
|
|
66
|
+
prev_nf = nf
|
|
67
|
+
self.encoder.append(convs)
|
|
68
|
+
encoder_nfs.append(prev_nf)
|
|
69
|
+
|
|
70
|
+
# configure decoder (up-sampling path)
|
|
71
|
+
encoder_nfs = np.flip(encoder_nfs)
|
|
72
|
+
self.decoder = nn.ModuleList()
|
|
73
|
+
for level in range(self.nb_levels - 1):
|
|
74
|
+
convs = nn.ModuleList()
|
|
75
|
+
for conv in range(nb_conv_per_level):
|
|
76
|
+
nf = dec_nf[level * nb_conv_per_level + conv]
|
|
77
|
+
convs.append(ConvBlock(ndims, prev_nf, nf))
|
|
78
|
+
prev_nf = nf
|
|
79
|
+
self.decoder.append(convs)
|
|
80
|
+
if level < (self.nb_levels - 1):
|
|
81
|
+
prev_nf += encoder_nfs[level]
|
|
82
|
+
|
|
83
|
+
# now we take care of any remaining convolutions
|
|
84
|
+
self.remaining = nn.ModuleList()
|
|
85
|
+
for num, nf in enumerate(final_convs):
|
|
86
|
+
self.remaining.append(ConvBlock(ndims, prev_nf, nf))
|
|
87
|
+
prev_nf = nf
|
|
88
|
+
|
|
89
|
+
# final convolutions
|
|
90
|
+
if return_mask:
|
|
91
|
+
self.remaining.append(ConvBlock(ndims, prev_nf, 2, activation=None))
|
|
92
|
+
self.remaining.append(nn.Softmax(dim=1))
|
|
93
|
+
else:
|
|
94
|
+
self.remaining.append(ConvBlock(ndims, prev_nf, 1, activation=None))
|
|
95
|
+
|
|
96
|
+
def forward(self, x, a=None):
|
|
97
|
+
|
|
98
|
+
# encoder forward pass
|
|
99
|
+
x_history = [x]
|
|
100
|
+
for level, convs in enumerate(self.encoder):
|
|
101
|
+
for conv in convs:
|
|
102
|
+
x = conv(x)
|
|
103
|
+
x_history.append(x)
|
|
104
|
+
x = self.pooling[level](x)
|
|
105
|
+
|
|
106
|
+
# decoder forward pass with upsampling and concatenation
|
|
107
|
+
for level, convs in enumerate(self.decoder):
|
|
108
|
+
for conv in convs:
|
|
109
|
+
x = conv(x)
|
|
110
|
+
if level < (self.nb_levels - 1):
|
|
111
|
+
x = self.upsampling[level](x)
|
|
112
|
+
x = torch.cat([x, x_history.pop()], dim=1)
|
|
113
|
+
|
|
114
|
+
# remaining convs at full resolution
|
|
115
|
+
for conv in self.remaining:
|
|
116
|
+
x = conv(x)
|
|
117
|
+
|
|
118
|
+
return x
|
|
119
|
+
|
|
120
|
+
class ConvBlock(nn.Module):
|
|
121
|
+
"""
|
|
122
|
+
Specific convolutional block followed by leakyrelu for unet.
|
|
123
|
+
"""
|
|
124
|
+
|
|
125
|
+
def __init__(self, ndims, in_channels, out_channels, stride=1, activation='leaky'):
|
|
126
|
+
super().__init__()
|
|
127
|
+
|
|
128
|
+
Conv = getattr(nn, 'Conv%dd' % ndims)
|
|
129
|
+
self.conv = Conv(in_channels, out_channels, 3, stride, 1)
|
|
130
|
+
if activation == 'leaky':
|
|
131
|
+
self.activation = nn.LeakyReLU(0.2)
|
|
132
|
+
elif activation == None:
|
|
133
|
+
self.activation = None
|
|
134
|
+
else:
|
|
135
|
+
raise ValueError(f'Unknown activation: {activation}')
|
|
136
|
+
|
|
137
|
+
def forward(self, x):
|
|
138
|
+
out = self.conv(x)
|
|
139
|
+
if self.activation is not None:
|
|
140
|
+
out = self.activation(out)
|
|
141
|
+
return out
|
|
@@ -0,0 +1,5 @@
|
|
|
1
|
+
__author__='Bahram Jafrasteh'
|
|
2
|
+
|
|
3
|
+
__all__ = ['mainwindow_widget', 'fileDialog_widget', 'be_dl_unet3d', 'settings_widget', 'melageAbout', 'repeat_widget', 'registrationWidget', 'HistImage', 'about', 'iminfo', 'activator', 'openglWidgets', 'MaskOperations', 'N4Dialog', 'Synthstrip', 'ChangeSystem', 'ImageThresholding', 'screenshot_widget', 'be_dl', 'ApplyMask', 'colorwidget', 'enhanceImWidget', 'tranformationWidget', 'activation', 'dockWidgets', 'brain_extraction', 'brain_extraction_dl']
|
|
4
|
+
|
|
5
|
+
|
melage/widgets/about.py
ADDED
|
@@ -0,0 +1,246 @@
|
|
|
1
|
+
__AUTHOR__ = 'Bahram Jafrasteh'
|
|
2
|
+
|
|
3
|
+
from PyQt5 import QtWidgets, QtCore, QtGui
|
|
4
|
+
from PyQt5.QtCore import pyqtSignal
|
|
5
|
+
|
|
6
|
+
class iminfo_dialog(QtWidgets.QDialog):
|
|
7
|
+
"""
|
|
8
|
+
This calss has been implemented to show image info
|
|
9
|
+
"""
|
|
10
|
+
|
|
11
|
+
closeSig = pyqtSignal()
|
|
12
|
+
def __init__(self, parent=None):
|
|
13
|
+
QtWidgets.QDialog.__init__(self, parent)
|
|
14
|
+
self.setWindowTitle("Activation")
|
|
15
|
+
|
|
16
|
+
self.setupUi()
|
|
17
|
+
def closeEvent(self, a0: QtGui.QCloseEvent) -> None:
|
|
18
|
+
self.closeSig.emit()
|
|
19
|
+
super(iminfo_dialog, self).closeEvent(a0)
|
|
20
|
+
|
|
21
|
+
def setupUi(self):
|
|
22
|
+
Dialog = self.window()
|
|
23
|
+
Dialog.setObjectName("Image info")
|
|
24
|
+
Dialog.resize(803, 340)
|
|
25
|
+
self.grid_main = QtWidgets.QVBoxLayout(self)
|
|
26
|
+
self.grid_main.setContentsMargins(10,10,10,10)
|
|
27
|
+
self.grid_main.setObjectName("gridLayout")
|
|
28
|
+
self.tabWidget = QtWidgets.QTabWidget()
|
|
29
|
+
self.tabWidget.setGeometry(QtCore.QRect(20, 30, 761, 251))
|
|
30
|
+
self.tabWidget.setObjectName("tabWidget")
|
|
31
|
+
sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
|
|
32
|
+
sizePolicy.setHorizontalStretch(0)
|
|
33
|
+
sizePolicy.setVerticalStretch(0)
|
|
34
|
+
sizePolicy.setHeightForWidth(self.tabWidget.sizePolicy().hasHeightForWidth())
|
|
35
|
+
self.tabWidget.setSizePolicy(sizePolicy)
|
|
36
|
+
self.tabWidget.setMinimumSize(QtCore.QSize(100, 100))
|
|
37
|
+
self.tab = QtWidgets.QWidget()
|
|
38
|
+
self.tab.setObjectName("tab")
|
|
39
|
+
self.gridLayout_mri = QtWidgets.QGridLayout(self.tab)
|
|
40
|
+
self.gridLayout_mri.setContentsMargins(10, 10, 10, 10)
|
|
41
|
+
self.gridLayout_mri.setObjectName("gridLayout_6")
|
|
42
|
+
self.label_mri = QtWidgets.QTextEdit(self.tab)
|
|
43
|
+
#a=[['Specific Character Set', 'ISO 2022 IR 100'], ['Image Type', ['ORIGINAL', 'SECONDARY', 'M', 'ND', 'NORM', 'FM', 'FIL']], ['Instance Creation Date', '20221122'], ['Instance Creation Time', '132720'], ['SOP Class UID', '1.2.840.10008.5.1.4.1.1.4'], ['SOP Instance UID', '1.2.840.113704.7.1.0.24314716597252255.1669120040.34722'], ['Study Date', '20210918'], ['Series Date', '20210918'], ['Acquisition Date', '20210918'], ['Content Date', '20210918'], ['Study Time', '125148.593000'], ['Series Time', '130306.453000'], ['Acquisition Time', '125906.770000'], ['Content Time', '130306.453000'], ['Accession Number', '124599971'], ['Modality', 'MR'], ['Modalities in Study', ['MR', 'SR']], ['Manufacturer', 'SIEMENS'], ['Institution Name', 'Hospital Puerta del Mar'], ['Institution Address', 'Av. Ana deb Viya 21,Cadiz,District,ES,11009'], ["Referring Physician's Name", 'RUIZ^ESTEFANIA'], ['Station Name', 'MRC37557'], ['Study Description', 'RM sin Contraste I.V. de Cráneo'], ['Procedure Code Sequence', 1], ['Series Description', 't1_mprage_tra_p2_iso'], ['Institutional Department Name', 'Department'], ['Physician(s) of Record', 'RUIZ^ESTEFANIA'], ["Performing Physician's Name", ''], ["Manufacturer's Model Name", 'SymphonyTim'], ['Referenced Image Sequence', 3], ['Source Image Sequence', 1], ["Patient's Name", 'BEARDO NAVAS^ADRIANA'], ['Patient ID', 'AN1337834619'], ['Issuer of Patient ID', 'NUHSA'], ["Patient's Birth Date", '20110128'], ["Patient's Sex", 'F'], ["Patient's Age", '010Y'], ["Patient's Size", '0.0'], ["Patient's Weight", '35.0'], ['Pregnancy Status', 4], ['Scanning Sequence', ['GR', 'IR']], ['Sequence Variant', ['SP', 'MP', 'OSP']], ['Scan Options', ['IR', 'PFP']], ['MR Acquisition Type', '3D'], ['Sequence Name', '*tfl3d1'], ['Angio Flag', 'N'], ['Slice Thickness', '1.0'], ['Repetition Time', '1910.0'], ['Echo Time', '3.53'], ['Inversion Time', '1100.0'], ['Number of Averages', '1.0'], ['Imaging Frequency', '63.686144'], ['Imaged Nucleus', '1H'], ['Echo Number(s)', '1'], ['Magnetic Field Strength', '1.5'], ['Number of Phase Encoding Steps', '223'], ['Echo Train Length', '1'], ['Percent Sampling', '100.0'], ['Percent Phase Field of View', '75.0'], ['Pixel Bandwidth', '130.0'], ['Device Serial Number', '37557'], ['Software Versions', 'syngo MR B19'], ['Protocol Name', 't1_mprage_tra_p2_iso'], ['Radionuclide Total Dose', None], ['Transmit Coil Name', 'Body'], ['Acquisition Matrix', [0, 256, 192, 0]], ['In-plane Phase Encoding Direction', 'ROW'], ['Flip Angle', '15.0'], ['Variable Flip Angle Flag', 'N'], ['SAR', '0.02698522422428'], ['dB/dt', '0.0'], ['Patient Position', 'HFS'], ['Private Creator', 'SIEMENS MR HEADER'], ['Study Instance UID', '1.2.840.113564.99.1.71094327813832.73.202191614221430.18408.2'], ['Series Instance UID', '1.2.840.113704.7.32.0.2.33.37557.2021091813030271133005070.0.0.0'], ['Study ID', '124599971'], ['Series Number', '5'], ['Acquisition Number', '1'], ['Instance Number', '1'], ['Image Position (Patient)', [-100.65369859619, -134.58704029078, -54.95581203964]], ['Image Orientation (Patient)', [0.99978196469588, 0.00571799450922, 0.02008301789151, -0.0087249648952, 0.98818840483709, 0.15299526637481]], ['Frame of Reference UID', '1.3.12.2.1107.5.2.33.37557.1.20210918125148781.0.0.0'], ['Position Reference Indicator', ''], ['Slice Location', '-31.777824626422'], ['Number of Study Related Instances', '513'], ['Samples per Pixel', 1], ['Photometric Interpretation', 'MONOCHROME2'], ['Rows', 256], ['Columns', 192], ['Pixel Spacing', [1, 1]], ['Bits Allocated', 16], ['Bits Stored', 12], ['High Bit', 11], ['Pixel Representation', 0], ['Smallest Image Pixel Value', 0], ['Largest Image Pixel Value', 328], ['Window Center', '170.0'], ['Window Width', '404.0'], ['Rescale Intercept', '0.0'], ['Rescale Slope', '1.0'], ['Window Center & Width Explanation', 'Selección del usuario'], ['VOI LUT Function', 'LINEAR'], ['Private Creator', 'SIEMENS CSA HEADER'], ['Private Creator', 'SIEMENS MEDCOM HEADER2'], ['Requesting Physician', 'RUIZ^ESTEFANIA'], ['Requesting Service', 'Servicio Andaluz de Salud'], ['Requested Procedure Description', 'RM sin Contraste I.V. de Cráneo'], ['Requested Procedure Code Sequence', 1], ['Performed Procedure Step Start Date', '20210918'], ['Performed Procedure Step Start Time', '125148.718000'], ['Performed Procedure Step ID', '124599971'], ['Performed Procedure Step Description', 'RM sin Contraste I.V. de Cráneo'], ['Request Attributes Sequence', 1], ['Private Creator', 'SIEMENS MR HEADER'], ['Icon Image Sequence', 1], ['Private Creator', 'ELSCINT1'], ['[Unknown]', 'N'], ['[Presentation Relative Center]', [0, 0]], ['[Presentation Relative Part]', [1, 1]], ['[Presentation Horizontal Invert]', 'N'], ['[Unknown]', 'N'], ['Private Creator', 'ELSCINT1'], ['[number of images in series]', 144], ['[Tamar Software Version]', '12.1.5.5'], ['[Tamar Study Status]', 'UNREAD'], ['Private tag data', 'NOT ASSIGNED'], ['[Unknown]', '1'], ['Private tag data', 'AXIAL'], ['[Tamar Site Id]', 10009], ['Private tag data', 'Y'], ['Private tag data', 'S'], ['Private tag data', '20210918131109.000000'], ['Private tag data', 'N'], ['[Unknown]', ['2D', 'PALETTE']], ['[Tamar Translate Flags]', 3], ['Private tag data', '00021563706'], ['Private tag data', '02009'], ['Private tag data', '10009'], ['Private tag data', '9022727127041'], ['Private Creator', 'ELSCINT1'], ['[Tamar Exe Software Version]', '12.1.5.5'], ['[Tamar Study Has Sticky Note]', 'N'], ['Private tag data', 'RMCRA-SCIV'], ['Private tag data', 'Pediatría'], ['Private tag data', 'SC'], ['Private tag data', 'ZUAZO'], ['Private tag data', 'MIREN AMAYA'], ['Private tag data', '7044233'], ['Private tag data', 'SG10009MR01'], ['[Unknown]', [0, 0, 0, 0, 1, 0, 0]], ['Private tag data', 'T1'], ['[Unknown]', 'N']]#, ['[Unknown]', <Sequence, length 8>], ['Private tag data', 'N'], ['[Unknown]', 'N'], ['[Unknown]', 'N'], ['Private tag data', 0], ['Private tag data', 'N'], ['Private tag data', 'N']]
|
|
44
|
+
#txt = ''
|
|
45
|
+
#for el in a:
|
|
46
|
+
#txt += '<p style="color:#0088ff">{}'.format(el[0]) + " "+'<span style="color:#ff0026;"></span>{}</p><br>'.format(el[1])
|
|
47
|
+
#txt = '<p style="font-size:14px; color:#538b01; font-weight:bold; font-style:italic;">Enter the competition by <span style="font-size:14px; color:#ff00; font-weight:bold; font-style:italic;"</span>summer</p>'
|
|
48
|
+
# txt += '<p style="font-size:14px; color:#538b01; font-weight:bold; font-style:italic;"> {} <span style="color:#FF0000">{}</span> </p>'.format(el[0], el[1])
|
|
49
|
+
#self.label_mri.setHtml(txt)
|
|
50
|
+
self.label_mri.setReadOnly(True)
|
|
51
|
+
self.gridLayout_mri.addWidget(self.label_mri,1,1,1,1)
|
|
52
|
+
|
|
53
|
+
|
|
54
|
+
self.tabWidget.addTab(self.tab, "")
|
|
55
|
+
self.tab_2 = QtWidgets.QWidget()
|
|
56
|
+
self.tab_2.setObjectName("tab_2")
|
|
57
|
+
|
|
58
|
+
self.gridLayout_eco = QtWidgets.QGridLayout(self.tab_2)
|
|
59
|
+
self.gridLayout_eco.setContentsMargins(10, 10, 10, 10)
|
|
60
|
+
self.gridLayout_eco.setObjectName("gridLayout_6")
|
|
61
|
+
self.label_eco = QtWidgets.QTextEdit(self.tab)
|
|
62
|
+
|
|
63
|
+
self.label_eco.setReadOnly(True)
|
|
64
|
+
self.gridLayout_eco.addWidget(self.label_eco,0,0,0,0)
|
|
65
|
+
|
|
66
|
+
self.tabWidget.addTab(self.tab_2, "")
|
|
67
|
+
self.hbox = QtWidgets.QHBoxLayout()
|
|
68
|
+
self.buttonBox = QtWidgets.QPushButton()
|
|
69
|
+
self.buttonBox.clicked.connect(self._next_find)
|
|
70
|
+
|
|
71
|
+
self.buttonBox.setGeometry(QtCore.QRect(610, 290, 166, 25))
|
|
72
|
+
#self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel | QtWidgets.QDialogButtonBox.Ok)
|
|
73
|
+
self.buttonBox.setObjectName("buttonBox")
|
|
74
|
+
|
|
75
|
+
#self.gridLayout_6.addWidget(self.buttonBox, 4, 4, 1, 1)
|
|
76
|
+
#self.gridLayout_4.addWidget(self.buttonBox, 4, 4, 1, 1)
|
|
77
|
+
|
|
78
|
+
|
|
79
|
+
#self.grid_main.addLayout(self.gridLayout_6)
|
|
80
|
+
#self.grid_main.addWidget(self.tab_2)
|
|
81
|
+
|
|
82
|
+
#
|
|
83
|
+
self.label_search = QtWidgets.QLineEdit()
|
|
84
|
+
# spacer = QtWidgets.QSpacerItem(1120, 4, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding)
|
|
85
|
+
|
|
86
|
+
self.label_search.textChanged.connect(self.search_for_text)
|
|
87
|
+
self.hbox.addWidget(self.label_search)
|
|
88
|
+
self.hbox.addWidget(self.buttonBox)
|
|
89
|
+
# self.hbox.addItem(spacer)
|
|
90
|
+
|
|
91
|
+
self.grid_main.addWidget(self.tabWidget)
|
|
92
|
+
self.grid_main.addLayout(self.hbox, 0)
|
|
93
|
+
#self.gridLayout_mri.addWidget(self.label_search)
|
|
94
|
+
|
|
95
|
+
self.retranslateUi(Dialog)
|
|
96
|
+
self.tabWidget.setCurrentIndex(0)
|
|
97
|
+
QtCore.QMetaObject.connectSlotsByName(Dialog)
|
|
98
|
+
|
|
99
|
+
def set_tag_value(self, a, ind):
|
|
100
|
+
txt = ''
|
|
101
|
+
for el in a:
|
|
102
|
+
# txt += '<p style="color:#0088ff">{}'.format(el[0]) + " "+'<span style="color:#ff0026;"></span>{}</p><br>'.format(el[1])
|
|
103
|
+
# txt = '<p style="font-size:14px; color:#538b01; font-weight:bold; font-style:italic;">Enter the competition by <span style="font-size:14px; color:#ff00; font-weight:bold; font-style:italic;"</span>summer</p>'
|
|
104
|
+
txt += '<p style="font-size:14px; color:#538b01; font-weight:bold; font-style:italic;"> {} <span style="color:#FF0000">{}</span> </p>'.format(
|
|
105
|
+
str(el[0]), str(el[1]))
|
|
106
|
+
if ind ==0:
|
|
107
|
+
self.label_mri.setHtml(txt)
|
|
108
|
+
else:
|
|
109
|
+
self.label_eco.setHtml(txt)
|
|
110
|
+
|
|
111
|
+
def _next_find(self):
|
|
112
|
+
if not hasattr(self, '_next_el'):
|
|
113
|
+
return
|
|
114
|
+
self._next_el += 1
|
|
115
|
+
ind = self.tabWidget.currentIndex()
|
|
116
|
+
if ind == 0:
|
|
117
|
+
label = self.label_mri
|
|
118
|
+
else:
|
|
119
|
+
label = self.label_eco
|
|
120
|
+
txt2 = self.label_search.text()
|
|
121
|
+
if txt2 != '':
|
|
122
|
+
try:
|
|
123
|
+
txt = label.toPlainText().split('\n')
|
|
124
|
+
founds = [i for i, el in enumerate(txt) if txt2.lower() in el.lower()]
|
|
125
|
+
if self._next_el>len(founds):
|
|
126
|
+
self._next_el = 0
|
|
127
|
+
cursor = QtGui.QTextCursor(label.document().findBlockByNumber(founds[self._next_el]))
|
|
128
|
+
# format = QtGui.QTextCharFormat()
|
|
129
|
+
# format.setBackground(QtGui.QBrush(QtGui.QColor("blue")))
|
|
130
|
+
# cursor.setCharFormat(format)
|
|
131
|
+
cursor.movePosition(QtGui.QTextCursor.EndOfLine, 1)
|
|
132
|
+
|
|
133
|
+
label.setTextCursor(cursor)
|
|
134
|
+
|
|
135
|
+
except:
|
|
136
|
+
pass
|
|
137
|
+
|
|
138
|
+
|
|
139
|
+
def search_for_text(self):
|
|
140
|
+
ind = self.tabWidget.currentIndex()
|
|
141
|
+
if ind == 0:
|
|
142
|
+
label = self.label_mri
|
|
143
|
+
else:
|
|
144
|
+
label = self.label_eco
|
|
145
|
+
txt2 = self.label_search.text()
|
|
146
|
+
if txt2!='':
|
|
147
|
+
try:
|
|
148
|
+
txt = label.toPlainText().split('\n')
|
|
149
|
+
found= [i for i, el in enumerate(txt) if txt2.lower() in el.lower()]
|
|
150
|
+
self._next_el = 0
|
|
151
|
+
cursor = QtGui.QTextCursor(label.document().findBlockByNumber(found[0]))
|
|
152
|
+
#format = QtGui.QTextCharFormat()
|
|
153
|
+
#format.setBackground(QtGui.QBrush(QtGui.QColor("blue")))
|
|
154
|
+
#cursor.setCharFormat(format)
|
|
155
|
+
cursor.movePosition(QtGui.QTextCursor.EndOfLine, 1)
|
|
156
|
+
|
|
157
|
+
label.setTextCursor(cursor)
|
|
158
|
+
|
|
159
|
+
except:
|
|
160
|
+
pass
|
|
161
|
+
else:
|
|
162
|
+
cursor = QtGui.QTextCursor(label.document())
|
|
163
|
+
cursor.movePosition(QtGui.QTextCursor.Start, 0)
|
|
164
|
+
|
|
165
|
+
label.setTextCursor(cursor)
|
|
166
|
+
|
|
167
|
+
|
|
168
|
+
|
|
169
|
+
def UpdateName(self, a, b):
|
|
170
|
+
_translate = QtCore.QCoreApplication.translate
|
|
171
|
+
if a is not None:
|
|
172
|
+
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab), _translate("Dialog", a))
|
|
173
|
+
if b is not None:
|
|
174
|
+
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab_2), _translate("Dialog", b))
|
|
175
|
+
|
|
176
|
+
def updata_name_iminfo(self, name, index):
|
|
177
|
+
_translate = QtCore.QCoreApplication.translate
|
|
178
|
+
if index==0:
|
|
179
|
+
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab), _translate("Dialog", "MRI".format(name)))
|
|
180
|
+
else:
|
|
181
|
+
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab_2), _translate("Dialog", "{}".format(name)))
|
|
182
|
+
def retranslateUi(self, Dialog):
|
|
183
|
+
_translate = QtCore.QCoreApplication.translate
|
|
184
|
+
Dialog.setWindowTitle(_translate("Dialog", "Image Information"))
|
|
185
|
+
|
|
186
|
+
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab), _translate("Dialog", "MRI"))
|
|
187
|
+
|
|
188
|
+
self.buttonBox.setText(_translate("Dialog", "OK"))
|
|
189
|
+
|
|
190
|
+
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab_2), _translate("Dialog", "US"))
|
|
191
|
+
def setmri(self, lst):
|
|
192
|
+
try:
|
|
193
|
+
#_eco = ['affine_eco_l', 'dt_eco_l', 'fn_eco_l', 'frmt_eco_l', 'dim_eco_l', 'spc_eco_l', 'voxel_offset_eco_l']
|
|
194
|
+
#_mri = ['affine_mri_l', 'dt_mri_l', 'fn_mri_l', 'frmt_mri_l', 'dim_mri_l', 'spc_mri_l', 'voxel_offset_mri_l']
|
|
195
|
+
header, affine, filename , format = lst
|
|
196
|
+
self.affine_mri_l.setText(''.join(str(affine).split('\n')))
|
|
197
|
+
|
|
198
|
+
self.fn_mri_l.setText(filename.split('.')[0])
|
|
199
|
+
self.frmt_mri_l.setText(format)
|
|
200
|
+
|
|
201
|
+
self.dt_mri_l.setText(header.get_data_dtype().name)
|
|
202
|
+
spacing = ', '.join([str(el) for el in header['pixdim'][1:4]])
|
|
203
|
+
self.spc_mri_l.setText(spacing)
|
|
204
|
+
dims = ', '.join([str(el) for el in header['dim'][1:4]])
|
|
205
|
+
self.dim_mri_l.setText(dims)
|
|
206
|
+
vos = str(header['vox_offset'])
|
|
207
|
+
self.voxel_offset_mri_l.setText(vos)
|
|
208
|
+
except:
|
|
209
|
+
pass
|
|
210
|
+
def seteco(self, lst):
|
|
211
|
+
try:
|
|
212
|
+
#_eco = ['affine_eco_l', 'dt_eco_l', 'fn_eco_l', 'frmt_eco_l', 'dim_eco_l', 'spc_eco_l', 'voxel_offset_eco_l']
|
|
213
|
+
#_mri = ['affine_mri_l', 'dt_mri_l', 'fn_mri_l', 'frmt_mri_l', 'dim_mri_l', 'spc_mri_l', 'voxel_offset_mri_l']
|
|
214
|
+
header, affine, filename , format = lst
|
|
215
|
+
self.affine_eco_l.setText(''.join(str(affine).split('\n')))
|
|
216
|
+
|
|
217
|
+
self.fn_eco_l.setText(filename.split('.')[0])
|
|
218
|
+
self.frmt_eco_l.setText(format)
|
|
219
|
+
|
|
220
|
+
self.dt_eco_l.setText(header.get_data_dtype().name)
|
|
221
|
+
spacing = ', '.join([str(el) for el in header['pixdim'][1:4]])
|
|
222
|
+
self.spc_eco_l.setText(spacing)
|
|
223
|
+
dims = ', '.join([str(el) for el in header['dim'][1:4]])
|
|
224
|
+
self.dim_eco_l.setText(dims)
|
|
225
|
+
vos = str(header['vox_offset'])
|
|
226
|
+
self.voxel_offset_eco_l.setText(vos)
|
|
227
|
+
except:
|
|
228
|
+
pass
|
|
229
|
+
|
|
230
|
+
|
|
231
|
+
|
|
232
|
+
|
|
233
|
+
|
|
234
|
+
|
|
235
|
+
|
|
236
|
+
|
|
237
|
+
|
|
238
|
+
def run():
|
|
239
|
+
import sys
|
|
240
|
+
app = QtWidgets.QApplication(sys.argv)
|
|
241
|
+
window = iminfo0()
|
|
242
|
+
window.show()
|
|
243
|
+
sys.exit(app.exec_())
|
|
244
|
+
|
|
245
|
+
if __name__ == '__main__':
|
|
246
|
+
run()
|