melage 0.0.65__py3-none-any.whl

melage/version.txt

@@ -0,0 +1 @@
+2,0,1

melage/widgets/ApplyMask.py

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+__AUTHOR__ = 'Bahram Jafrasteh'
+
+from PyQt5 import QtCore, QtGui, QtWidgets
+from PyQt5.QtCore import Qt
+from PyQt5.QtCore import pyqtSignal
+
+
+class Worker(QtCore.QObject):
+    """
+
+    """
+    finished = pyqtSignal()
+    def __init__(self, id: int):
+        super().__init__()
+        self.__id = id
+        self.param_set = False
+        self.inputimage = None
+        self.out = None
+    #@QtCore.pyqtSlot()
+    def run(self):
+        if self.inputimage is None or not self.param_set:
+            return
+        from melage.utils.utils import N4_bias_correction
+
+
+        out = N4_bias_correction(self.inputimage, use_otsu=self._outsu,
+                                 shrinkFactor=self._selectedColor, numberFittingLevels=self._filtering_level,
+                                 max_iter=self._max_iter)
+
+
+        self.inputimage = None
+        self.out = out
+        self.param_set = False
+        self.finished.emit()
+        #self.close()
+
+    def set_params(self, inpim, params):
+        self.param_set = True
+        [self._max_iter, self._selectedColor, self._filtering_level, self._outsu] = params
+        self.inputimage = inpim
+
+
+class Masking(QtWidgets.QDialog):
+    """
+    Apply segmentation mask to the image
+    """
+    buttonpressed = pyqtSignal(object)
+    closeSig = pyqtSignal()
+
+    def __init__(self, parent=None):
+        QtWidgets.QDialog.__init__(self, parent)
+        self.setWindowTitle("Child Window!")
+        self.inputimage = None
+
+
+        self.setupUi()
+
+    def setupUi(self):
+        Form = self.window()
+        Form.setObjectName("N4")
+        Form.resize(759, 140)
+        self.grid_main = QtWidgets.QGridLayout(self)
+        self.grid_main.setContentsMargins(0,0,0,0)
+        self.grid_main.setObjectName("gridLayout")
+        self.widget = QtWidgets.QWidget()
+
+        #self.widget.setGeometry(QtCore.QRect(43, 20, 644, 89))
+        self.widget.setObjectName("widget")
+        self.gridLayout = QtWidgets.QGridLayout(self.widget)
+        self.gridLayout.setContentsMargins(10, 10, 10, 10)
+        self.gridLayout.setObjectName("gridLayout")
+
+        self.splitter = QtWidgets.QSplitter(self.widget)
+        self.splitter.setOrientation(QtCore.Qt.Horizontal)
+        self.splitter.setObjectName("splitter")
+
+        #self.gridLayout.addWidget(self.splitter, 0, 1, 1, 1)
+
+        self.mask_color = QtWidgets.QLabel(self.widget)
+        self.mask_color.setAlignment(QtCore.Qt.AlignCenter)
+        self.mask_color.setObjectName("mask_color")
+        self.gridLayout.addWidget(self.mask_color, 0, 2, 1, 1)
+
+        self.mask_keep_remove = QtWidgets.QComboBox(self.widget)
+        self.mask_keep_remove.setObjectName("comboBox_image")
+        self.mask_keep_remove.addItem("Keep")
+        self.mask_keep_remove.addItem("Remove")
+        self.gridLayout.addWidget(self.mask_keep_remove, 0, 1, 1, 1)
+
+        self._combobox_colors = QtWidgets.QComboBox(self.widget)
+        self._combobox_colors.setObjectName("_combobox_colors")
+
+        self.gridLayout.addWidget(self._combobox_colors, 0,3, 1, 3)
+
+
+
+        #self.pushButton_2 = QtWidgets.QPushButton(self.widget)
+        #self.pushButton_2.setObjectName("pushButton")
+        #self.gridLayout.addWidget(self.pushButton_2, 0, 6, 1, 1)
+        self.pushButton = QtWidgets.QPushButton(self.widget)
+        self.pushButton.setObjectName("pushButton_2")
+        self.gridLayout.addWidget(self.pushButton, 1, 5, 1, 3)
+        self.progressBar = QtWidgets.QProgressBar(self.widget)
+        self.progressBar.setEnabled(False)
+        self.progressBar.setProperty("value", 0)
+        self.progressBar.setAlignment(QtCore.Qt.AlignCenter)
+        self.progressBar.setObjectName("progressBar")
+        self.gridLayout.addWidget(self.progressBar, 1, 0, 1, 5)
+        #spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
+        #self.gridLayout.addItem(spacerItem, 0, 1, 1, 4)
+        self.comboBox_image = QtWidgets.QComboBox(self.widget)
+        self.comboBox_image.setObjectName("comboBox_image")
+        self.comboBox_image.addItem("")
+        self.comboBox_image.addItem("")
+        self.gridLayout.addWidget(self.comboBox_image, 0, 0, 1, 1)
+
+        #self.label_timer = QtWidgets.QLabel(self.widget)
+        #self.label_timer.setAlignment(QtCore.Qt.AlignCenter)
+        #self.label_timer.setObjectName("label")
+        #self.gridLayout.addWidget(self.label_timer, 1, 0, 1, 1)
+        self.grid_main.addWidget(self.widget)
+        self.retranslateUi(Form)
+        QtCore.QMetaObject.connectSlotsByName(Form)
+
+
+
+
+
+        for i in range(4):
+            self._combobox_colors.setItemData(i, Qt.AlignCenter, Qt.TextAlignmentRole)
+            self._combobox_colors.addItem("    fdfdffdff{}    ".format(i+1))
+
+        self.pushButton.clicked.connect(self.accepted_emit)
+
+
+
+
+        self.progressBar.setVisible(True)
+
+
+
+    def setComboBoxColors(self, color_name):
+        self._combobox_colors.clear()
+        for colr in color_name:
+            #self._combobox_colors.setItemData(i, Qt.AlignCenter, Qt.TextAlignmentRole)
+            self._combobox_colors.addItem("   {}   ".format(colr))
+
+    def startTimer(self):
+        self.time_spent = 0
+
+        self.myTimer = QtCore.QTimer(self)
+        self.myTimer.timeout.connect(self.timerTimeout)
+        self.myTimer.start(1000)
+
+    def timerTimeout(self):
+        self.time_spent += 1
+        if self.time_spent == 0:
+            self.time_spent = 50
+        self.label_timer.setText(str(self.time_spent))
+
+
+
+
+    def retranslateUi(self, Form):
+        _translate = QtCore.QCoreApplication.translate
+        Form.setWindowTitle(_translate("Form", "Apply Mask"))
+
+
+
+
+
+
+
+
+
+        self.mask_color.setText(_translate("Form", "Mask Color"))
+        self.mask_keep_remove.setItemText(0, _translate("Form", "        Keep        "))
+        self.mask_keep_remove.setItemText(1, _translate("Form", "        Remove        "))
+        self.comboBox_image.setItemText(0, _translate("Form", "        View 1        "))
+        self.comboBox_image.setItemText(1, _translate("Form", "      View 2      "))
+        #self.label_timer.setText(_translate("Form", "00:00"))
+        self.pushButton.setText(_translate("Form", "Apply"))
+        self.pushButton.setVisible(True)
+    def message(self):
+
+        self.MessageBox.setText('Please fill with numeric (!=0) and text')
+        self.MessageBox.setWindowTitle('Warning')
+        self.MessageBox.show()
+
+    def accepted_emit(self):
+
+        index_image = self.comboBox_image.currentIndex()
+
+        index_keep_remove = self.mask_keep_remove.currentText().strip(' ')
+        keep = False
+        if index_keep_remove.lower()=='keep':
+            keep = True
+        index_color = self._combobox_colors.currentIndex()
+        self.buttonpressed.emit([index_image, index_color, keep])
+
+    def closeEvent(self, a0: QtGui.QCloseEvent) -> None:
+        self.closeSig.emit()
+        super(Masking, self).closeEvent(a0)
+
+def run():
+    import sys
+    app = QtWidgets.QApplication(sys.argv)
+    window = Masking()
+    window.show()
+    sys.exit(app.exec_())
+if __name__ == '__main__':
+    run()

melage/widgets/ChangeSystem.py

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+__AUTHOR__ = 'Bahram Jafrasteh'
+
+
+from PyQt5 import QtCore, QtGui, QtWidgets
+from PyQt5.QtCore import Qt
+from PyQt5.QtCore import pyqtSignal
+
+
+
+
+class ChangeCoordSys(QtWidgets.QDialog):
+    """
+    This class has been implemented to change coordinate system of the current image
+    """
+    buttonpressed = pyqtSignal(object)
+    closeSig = pyqtSignal()
+
+    def __init__(self, parent=None):
+        QtWidgets.QDialog.__init__(self, parent)
+        self.setWindowTitle("Child Window!")
+        self.inputimage = None
+
+
+        self.setupUi()
+
+    def setupUi(self):
+        Form = self.window()
+        Form.setObjectName("N4")
+        #Form.resize(759, 140)
+        self.grid_main = QtWidgets.QGridLayout(self)
+        self.grid_main.setContentsMargins(0,0,0,0)
+        self.grid_main.setObjectName("gridLayout")
+        self.widget = QtWidgets.QWidget()
+        #self.widget.setGeometry(QtCore.QRect(43, 20, 644, 89))
+        self.widget.setObjectName("widget")
+        self.gridLayout = QtWidgets.QGridLayout(self.widget)
+        self.gridLayout.setContentsMargins(10, 10, 10, 10)
+        self.gridLayout.setObjectName("gridLayout")
+
+        self.splitter = QtWidgets.QSplitter(self.widget)
+        self.splitter.setOrientation(QtCore.Qt.Horizontal)
+        self.splitter.setObjectName("splitter")
+
+        #self.gridLayout.addWidget(self.splitter, 0, 1, 1, 1)
+        self._labelfrom = QtWidgets.QLabel(self.widget)
+        self._labelfrom.setAlignment(QtCore.Qt.AlignCenter)
+        self._labelfrom.setObjectName("From")
+        self.gridLayout.addWidget(self._labelfrom, 0, 1, 1, 1)
+
+        self.label_current = QtWidgets.QLabel(self.widget)
+        self.label_current.setText('RAS')
+        self.label_current.setStyleSheet('color: Green')
+        self.gridLayout.addWidget(self.label_current, 0, 2, 1, 1)
+
+        self._labelto = QtWidgets.QLabel(self.widget)
+        self._labelto.setAlignment(QtCore.Qt.AlignCenter)
+        self._labelto.setObjectName("To")
+        self.gridLayout.addWidget(self._labelto, 0, 3, 1, 1)
+        self._combobox_coords = QtWidgets.QComboBox(self.widget)
+        self._combobox_coords.setObjectName("_combobox_coords")
+
+        self.gridLayout.addWidget(self._combobox_coords, 0,4, 1, 2)
+
+
+        #self.pushButton_2 = QtWidgets.QPushButton(self.widget)
+        #self.pushButton_2.setObjectName("pushButton")
+        #self.gridLayout.addWidget(self.pushButton_2, 0, 6, 1, 1)
+        self.pushButton = QtWidgets.QPushButton(self.widget)
+        self.pushButton.setObjectName("pushButton_2")
+        self.gridLayout.addWidget(self.pushButton, 1, 5, 1, 3)
+        self.label_warning = QtWidgets.QLabel(self.widget)
+
+        self.gridLayout.addWidget(self.label_warning, 1, 0, 1, 5)
+        self.label_warning.setStyleSheet('color: Red')
+        self.label_warning.setText('This options is for advanced users')
+
+        #spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
+        #self.gridLayout.addItem(spacerItem, 0, 1, 1, 4)
+        self.comboBox_image = QtWidgets.QComboBox(self.widget)
+        self.comboBox_image.setObjectName("comboBox_image")
+        self.comboBox_image.addItem("")
+        self.comboBox_image.addItem("")
+        #self.comboBox_image.currentIndexChanged.connect()
+        self.gridLayout.addWidget(self.comboBox_image, 0, 0, 1, 1)
+
+        #self.label_timer = QtWidgets.QLabel(self.widget)
+        #self.label_timer.setAlignment(QtCore.Qt.AlignCenter)
+        #self.label_timer.setObjectName("label")
+        #self.gridLayout.addWidget(self.label_timer, 1, 0, 1, 1)
+
+        self.retranslateUi(Form)
+        QtCore.QMetaObject.connectSlotsByName(Form)
+
+        (('L', 'R'), ('P', 'A'), ('I', 'S'))
+
+        self.systems = ['RAS', 'RSA', 'RPI', 'RPS',
+                   'RIP', 'RIA', 'RSP', 'RSA',
+                    'LAS', 'LAI', 'LPI', 'LPS',
+                   'LSA', 'LIA', 'LIP', 'LSP',
+                   'PIL', 'PIR', 'PSL', 'PSR',
+                   'PLI', 'PRI', 'PLS', 'PRS',
+                   'AIL', 'AIR', 'ASL', 'ASR',
+                   'ALI', 'ARI', 'ALS', 'ARS',
+                   'IPL', 'IPR', 'IAL', 'IAR',
+                   'ILP', 'IRP', 'ILA', 'IRA',
+                   'SPL', 'SPR', 'SAL', 'SAR',
+                   'SLP', 'SRP', 'SLA', 'SRA'
+                   ]
+        for i , ss in enumerate(self.systems):
+            self._combobox_coords.setItemData(i, Qt.AlignCenter, Qt.TextAlignmentRole)
+            self._combobox_coords.addItem(" "*9+ss+" "*9)
+        self.grid_main.addWidget(self.widget)
+        self.pushButton.clicked.connect(self.accepted_emit)
+
+
+
+
+    def retranslateUi(self, Form):
+        _translate = QtCore.QCoreApplication.translate
+        Form.setWindowTitle(_translate("Form", "Change Image Coordinate System"))
+
+
+        self._labelto.setText(_translate("Form", "To"))
+        self._labelfrom.setText(_translate("Form", "From"))
+        self.comboBox_image.setItemText(0, _translate("Form", "        View 1        "))
+        self.comboBox_image.setItemText(1, _translate("Form", "      View 2      "))
+        #self.label_timer.setText(_translate("Form", "00:00"))
+        self.pushButton.setText(_translate("Form", "Apply"))
+        self.pushButton.setVisible(True)
+    def closeEvent(self, a0: QtGui.QCloseEvent) -> None:
+        self.closeSig.emit()
+        super(ChangeCoordSys, self).closeEvent(a0)
+
+    def accepted_emit(self):
+
+
+        index_image = self.comboBox_image.currentIndex()
+
+        index_color = self._combobox_coords.currentIndex()
+        CS = self.systems[index_color]
+        self.buttonpressed.emit([index_image, CS])
+
+
+
+def run():
+    import sys
+    app = QtWidgets.QApplication(sys.argv)
+    window = ChangeCoordSys()
+    window.show()
+    sys.exit(app.exec_())
+if __name__ == '__main__':
+    run()