brainstate 0.1.8__py2.py3-none-any.whl → 0.1.10__py2.py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- brainstate/__init__.py +58 -51
- brainstate/_compatible_import.py +148 -148
- brainstate/_state.py +1605 -1663
- brainstate/_state_test.py +52 -52
- brainstate/_utils.py +47 -47
- brainstate/augment/__init__.py +30 -30
- brainstate/augment/_autograd.py +778 -778
- brainstate/augment/_autograd_test.py +1289 -1289
- brainstate/augment/_eval_shape.py +99 -99
- brainstate/augment/_eval_shape_test.py +38 -38
- brainstate/augment/_mapping.py +1060 -1060
- brainstate/augment/_mapping_test.py +597 -597
- brainstate/augment/_random.py +151 -151
- brainstate/compile/__init__.py +38 -38
- brainstate/compile/_ad_checkpoint.py +204 -204
- brainstate/compile/_ad_checkpoint_test.py +49 -49
- brainstate/compile/_conditions.py +256 -256
- brainstate/compile/_conditions_test.py +220 -220
- brainstate/compile/_error_if.py +92 -92
- brainstate/compile/_error_if_test.py +52 -52
- brainstate/compile/_jit.py +346 -346
- brainstate/compile/_jit_test.py +143 -143
- brainstate/compile/_loop_collect_return.py +536 -536
- brainstate/compile/_loop_collect_return_test.py +58 -58
- brainstate/compile/_loop_no_collection.py +184 -184
- brainstate/compile/_loop_no_collection_test.py +50 -50
- brainstate/compile/_make_jaxpr.py +888 -888
- brainstate/compile/_make_jaxpr_test.py +156 -156
- brainstate/compile/_progress_bar.py +202 -202
- brainstate/compile/_unvmap.py +159 -159
- brainstate/compile/_util.py +147 -147
- brainstate/environ.py +563 -563
- brainstate/environ_test.py +62 -62
- brainstate/functional/__init__.py +27 -26
- brainstate/graph/__init__.py +29 -29
- brainstate/graph/_graph_node.py +244 -244
- brainstate/graph/_graph_node_test.py +73 -73
- brainstate/graph/_graph_operation.py +1738 -1738
- brainstate/graph/_graph_operation_test.py +563 -563
- brainstate/init/__init__.py +26 -26
- brainstate/init/_base.py +52 -52
- brainstate/init/_generic.py +244 -244
- brainstate/init/_random_inits.py +553 -553
- brainstate/init/_random_inits_test.py +149 -149
- brainstate/init/_regular_inits.py +105 -105
- brainstate/init/_regular_inits_test.py +50 -50
- brainstate/mixin.py +365 -363
- brainstate/mixin_test.py +77 -73
- brainstate/nn/__init__.py +135 -131
- brainstate/{functional → nn}/_activations.py +808 -813
- brainstate/{functional → nn}/_activations_test.py +331 -331
- brainstate/nn/_collective_ops.py +514 -514
- brainstate/nn/_collective_ops_test.py +43 -43
- brainstate/nn/_common.py +178 -178
- brainstate/nn/_conv.py +501 -501
- brainstate/nn/_conv_test.py +238 -238
- brainstate/nn/_delay.py +588 -502
- brainstate/nn/_delay_test.py +238 -184
- brainstate/nn/_dropout.py +426 -426
- brainstate/nn/_dropout_test.py +100 -100
- brainstate/nn/_dynamics.py +1343 -1343
- brainstate/nn/_dynamics_test.py +78 -78
- brainstate/nn/_elementwise.py +1119 -1119
- brainstate/nn/_elementwise_test.py +169 -169
- brainstate/nn/_embedding.py +58 -58
- brainstate/nn/_exp_euler.py +92 -92
- brainstate/nn/_exp_euler_test.py +35 -35
- brainstate/nn/_fixedprob.py +239 -239
- brainstate/nn/_fixedprob_test.py +114 -114
- brainstate/nn/_inputs.py +608 -608
- brainstate/nn/_linear.py +424 -424
- brainstate/nn/_linear_mv.py +83 -83
- brainstate/nn/_linear_mv_test.py +120 -120
- brainstate/nn/_linear_test.py +107 -107
- brainstate/nn/_ltp.py +28 -28
- brainstate/nn/_module.py +377 -377
- brainstate/nn/_module_test.py +40 -40
- brainstate/nn/_neuron.py +705 -705
- brainstate/nn/_neuron_test.py +161 -161
- brainstate/nn/_normalizations.py +975 -918
- brainstate/nn/_normalizations_test.py +73 -73
- brainstate/{functional → nn}/_others.py +46 -46
- brainstate/nn/_poolings.py +1177 -1177
- brainstate/nn/_poolings_test.py +217 -217
- brainstate/nn/_projection.py +486 -486
- brainstate/nn/_rate_rnns.py +554 -554
- brainstate/nn/_rate_rnns_test.py +63 -63
- brainstate/nn/_readout.py +209 -209
- brainstate/nn/_readout_test.py +53 -53
- brainstate/nn/_stp.py +236 -236
- brainstate/nn/_synapse.py +505 -505
- brainstate/nn/_synapse_test.py +131 -131
- brainstate/nn/_synaptic_projection.py +423 -423
- brainstate/nn/_synouts.py +162 -162
- brainstate/nn/_synouts_test.py +57 -57
- brainstate/nn/_utils.py +89 -89
- brainstate/nn/metrics.py +388 -388
- brainstate/optim/__init__.py +38 -38
- brainstate/optim/_base.py +64 -64
- brainstate/optim/_lr_scheduler.py +448 -448
- brainstate/optim/_lr_scheduler_test.py +50 -50
- brainstate/optim/_optax_optimizer.py +152 -152
- brainstate/optim/_optax_optimizer_test.py +53 -53
- brainstate/optim/_sgd_optimizer.py +1104 -1104
- brainstate/random/__init__.py +24 -24
- brainstate/random/_rand_funs.py +3616 -3616
- brainstate/random/_rand_funs_test.py +567 -567
- brainstate/random/_rand_seed.py +210 -210
- brainstate/random/_rand_seed_test.py +48 -48
- brainstate/random/_rand_state.py +1409 -1409
- brainstate/random/_random_for_unit.py +52 -52
- brainstate/surrogate.py +1957 -1957
- brainstate/transform.py +23 -23
- brainstate/typing.py +304 -304
- brainstate/util/__init__.py +50 -50
- brainstate/util/caller.py +98 -98
- brainstate/util/error.py +55 -55
- brainstate/util/filter.py +469 -469
- brainstate/util/others.py +540 -540
- brainstate/util/pretty_pytree.py +945 -945
- brainstate/util/pretty_pytree_test.py +159 -159
- brainstate/util/pretty_repr.py +328 -328
- brainstate/util/pretty_table.py +2954 -2954
- brainstate/util/scaling.py +258 -258
- brainstate/util/struct.py +523 -523
- {brainstate-0.1.8.dist-info → brainstate-0.1.10.dist-info}/METADATA +91 -99
- brainstate-0.1.10.dist-info/RECORD +130 -0
- {brainstate-0.1.8.dist-info → brainstate-0.1.10.dist-info}/WHEEL +1 -1
- {brainstate-0.1.8.dist-info → brainstate-0.1.10.dist-info/licenses}/LICENSE +202 -202
- brainstate/functional/_normalization.py +0 -81
- brainstate/functional/_spikes.py +0 -204
- brainstate-0.1.8.dist-info/RECORD +0 -132
- {brainstate-0.1.8.dist-info → brainstate-0.1.10.dist-info}/top_level.txt +0 -0
brainstate/nn/_fixedprob_test.py
CHANGED
@@ -1,114 +1,114 @@
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# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# ==============================================================================
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import jax.numpy
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import jax.numpy as jnp
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import pytest
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import brainstate
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class TestFixedProbCSR:
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@pytest.mark.parametrize('allow_multi_conn', [True, False, ])
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def test1(self, allow_multi_conn):
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x = brainstate.random.rand(20) < 0.1
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# x = brainstate.random.rand(20)
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m = brainstate.nn.EventFixedProb(20, 40, 0.1, 1.0, seed=123, allow_multi_conn=allow_multi_conn)
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y = m(x)
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print(y)
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m2 = brainstate.nn.EventFixedProb(20, 40, 0.1, brainstate.init.KaimingUniform(), seed=123)
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print(m2(x))
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def test_grad_bool(self):
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n_in = 20
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n_out = 30
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x = jax.numpy.asarray(brainstate.random.rand(n_in) < 0.3, dtype=float)
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fn = brainstate.nn.EventFixedProb(n_in, n_out, 0.1, brainstate.init.KaimingUniform(), seed=123)
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def f(x):
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return fn(x).sum()
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print(jax.grad(f)(x))
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@pytest.mark.parametrize('homo_w', [True, False])
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def test_vjp(self, homo_w):
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n_in = 20
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n_out = 30
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x = jax.numpy.asarray(brainstate.random.rand(n_in) < 0.3, dtype=float)
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if homo_w:
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fn = brainstate.nn.EventFixedProb(n_in, n_out, 0.1, 1.5, seed=123)
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else:
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fn = brainstate.nn.EventFixedProb(n_in, n_out, 0.1, brainstate.init.KaimingUniform(), seed=123)
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w = fn.weight.value
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def f(x, w):
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fn.weight.value = w
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return fn(x).sum()
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r = brainstate.augment.grad(f, argnums=(0, 1))(x, w)
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# -------------------
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# TRUE gradients
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def true_fn(x, w, indices, n_post):
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post = jnp.zeros((n_post,))
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for i in range(n_in):
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post = post.at[indices[i]].add(w * x[i] if homo_w else w[i] * x[i])
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return post
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def f2(x, w):
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return true_fn(x, w, fn.conn.indices, n_out).sum()
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r2 = jax.grad(f2, argnums=(0, 1))(x, w)
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assert (jnp.allclose(r[0], r2[0]))
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assert (jnp.allclose(r[1], r2[1]))
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@pytest.mark.parametrize('homo_w', [True, False])
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def test_jvp(self, homo_w):
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n_in = 20
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n_out = 30
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x = jax.numpy.asarray(brainstate.random.rand(n_in) < 0.3, dtype=float)
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fn = brainstate.nn.EventFixedProb(
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n_in, n_out, 0.1, 1.5 if homo_w else brainstate.init.KaimingUniform(),
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seed=123,
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)
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w = fn.weight.value
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def f(x, w):
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fn.weight.value = w
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return fn(x)
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o1, r1 = jax.jvp(f, (x, w), (jnp.ones_like(x), jnp.ones_like(w)))
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# -------------------
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# TRUE gradients
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def true_fn(x, w, indices, n_post):
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post = jnp.zeros((n_post,))
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for i in range(n_in):
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post = post.at[indices[i]].add(w * x[i] if homo_w else w[i] * x[i])
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return post
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def f2(x, w):
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return true_fn(x, w, fn.conn.indices, n_out)
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o2, r2 = jax.jvp(f2, (x, w), (jnp.ones_like(x), jnp.ones_like(w)))
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assert (jnp.allclose(o1, o2))
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# assert jnp.allclose(r1, r2), f'r1={r1}, r2={r2}'
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assert (jnp.allclose(r1, r2, rtol=1e-4, atol=1e-4))
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# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# ==============================================================================
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import jax.numpy
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import jax.numpy as jnp
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import pytest
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import brainstate
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class TestFixedProbCSR:
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@pytest.mark.parametrize('allow_multi_conn', [True, False, ])
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def test1(self, allow_multi_conn):
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x = brainstate.random.rand(20) < 0.1
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# x = brainstate.random.rand(20)
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m = brainstate.nn.EventFixedProb(20, 40, 0.1, 1.0, seed=123, allow_multi_conn=allow_multi_conn)
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y = m(x)
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print(y)
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m2 = brainstate.nn.EventFixedProb(20, 40, 0.1, brainstate.init.KaimingUniform(), seed=123)
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print(m2(x))
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def test_grad_bool(self):
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n_in = 20
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n_out = 30
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x = jax.numpy.asarray(brainstate.random.rand(n_in) < 0.3, dtype=float)
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fn = brainstate.nn.EventFixedProb(n_in, n_out, 0.1, brainstate.init.KaimingUniform(), seed=123)
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def f(x):
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return fn(x).sum()
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print(jax.grad(f)(x))
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@pytest.mark.parametrize('homo_w', [True, False])
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def test_vjp(self, homo_w):
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n_in = 20
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n_out = 30
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x = jax.numpy.asarray(brainstate.random.rand(n_in) < 0.3, dtype=float)
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if homo_w:
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fn = brainstate.nn.EventFixedProb(n_in, n_out, 0.1, 1.5, seed=123)
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else:
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fn = brainstate.nn.EventFixedProb(n_in, n_out, 0.1, brainstate.init.KaimingUniform(), seed=123)
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w = fn.weight.value
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def f(x, w):
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fn.weight.value = w
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return fn(x).sum()
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r = brainstate.augment.grad(f, argnums=(0, 1))(x, w)
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# -------------------
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# TRUE gradients
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def true_fn(x, w, indices, n_post):
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post = jnp.zeros((n_post,))
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for i in range(n_in):
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post = post.at[indices[i]].add(w * x[i] if homo_w else w[i] * x[i])
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return post
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def f2(x, w):
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return true_fn(x, w, fn.conn.indices, n_out).sum()
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r2 = jax.grad(f2, argnums=(0, 1))(x, w)
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assert (jnp.allclose(r[0], r2[0]))
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assert (jnp.allclose(r[1], r2[1]))
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@pytest.mark.parametrize('homo_w', [True, False])
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def test_jvp(self, homo_w):
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n_in = 20
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n_out = 30
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x = jax.numpy.asarray(brainstate.random.rand(n_in) < 0.3, dtype=float)
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fn = brainstate.nn.EventFixedProb(
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n_in, n_out, 0.1, 1.5 if homo_w else brainstate.init.KaimingUniform(),
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seed=123,
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)
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w = fn.weight.value
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def f(x, w):
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fn.weight.value = w
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return fn(x)
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o1, r1 = jax.jvp(f, (x, w), (jnp.ones_like(x), jnp.ones_like(w)))
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# -------------------
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# TRUE gradients
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def true_fn(x, w, indices, n_post):
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post = jnp.zeros((n_post,))
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for i in range(n_in):
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post = post.at[indices[i]].add(w * x[i] if homo_w else w[i] * x[i])
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return post
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def f2(x, w):
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return true_fn(x, w, fn.conn.indices, n_out)
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o2, r2 = jax.jvp(f2, (x, w), (jnp.ones_like(x), jnp.ones_like(w)))
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assert (jnp.allclose(o1, o2))
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# assert jnp.allclose(r1, r2), f'r1={r1}, r2={r2}'
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assert (jnp.allclose(r1, r2, rtol=1e-4, atol=1e-4))
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