brainstate 0.0.2.post20241009__py2.py3-none-any.whl → 0.1.0__py2.py3-none-any.whl

brainstate/nn/_elementwise/_elementwise_test.py

@@ -0,0 +1,171 @@
+# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+from __future__ import annotations
+
+from absl.testing import absltest
+from absl.testing import parameterized
+
+import brainstate as bst
+
+
+class Test_Activation(parameterized.TestCase):
+
+    def test_Threshold(self):
+        threshold_layer = bst.nn.Threshold(5, 20)
+        input = bst.random.randn(2)
+        output = threshold_layer(input)
+
+    def test_ReLU(self):
+        ReLU_layer = bst.nn.ReLU()
+        input = bst.random.randn(2)
+        output = ReLU_layer(input)
+
+    def test_RReLU(self):
+        RReLU_layer = bst.nn.RReLU(lower=0, upper=1)
+        input = bst.random.randn(2)
+        output = RReLU_layer(input)
+
+    def test_Hardtanh(self):
+        Hardtanh_layer = bst.nn.Hardtanh(min_val=0, max_val=1, )
+        input = bst.random.randn(2)
+        output = Hardtanh_layer(input)
+
+    def test_ReLU6(self):
+        ReLU6_layer = bst.nn.ReLU6()
+        input = bst.random.randn(2)
+        output = ReLU6_layer(input)
+
+    def test_Sigmoid(self):
+        Sigmoid_layer = bst.nn.Sigmoid()
+        input = bst.random.randn(2)
+        output = Sigmoid_layer(input)
+
+    def test_Hardsigmoid(self):
+        Hardsigmoid_layer = bst.nn.Hardsigmoid()
+        input = bst.random.randn(2)
+        output = Hardsigmoid_layer(input)
+
+    def test_Tanh(self):
+        Tanh_layer = bst.nn.Tanh()
+        input = bst.random.randn(2)
+        output = Tanh_layer(input)
+
+    def test_SiLU(self):
+        SiLU_layer = bst.nn.SiLU()
+        input = bst.random.randn(2)
+        output = SiLU_layer(input)
+
+    def test_Mish(self):
+        Mish_layer = bst.nn.Mish()
+        input = bst.random.randn(2)
+        output = Mish_layer(input)
+
+    def test_Hardswish(self):
+        Hardswish_layer = bst.nn.Hardswish()
+        input = bst.random.randn(2)
+        output = Hardswish_layer(input)
+
+    def test_ELU(self):
+        ELU_layer = bst.nn.ELU(alpha=0.5, )
+        input = bst.random.randn(2)
+        output = ELU_layer(input)
+
+    def test_CELU(self):
+        CELU_layer = bst.nn.CELU(alpha=0.5, )
+        input = bst.random.randn(2)
+        output = CELU_layer(input)
+
+    def test_SELU(self):
+        SELU_layer = bst.nn.SELU()
+        input = bst.random.randn(2)
+        output = SELU_layer(input)
+
+    def test_GLU(self):
+        GLU_layer = bst.nn.GLU()
+        input = bst.random.randn(4, 2)
+        output = GLU_layer(input)
+
+    @parameterized.product(
+        approximate=['tanh', 'none']
+    )
+    def test_GELU(self, approximate):
+        GELU_layer = bst.nn.GELU()
+        input = bst.random.randn(2)
+        output = GELU_layer(input)
+
+    def test_Hardshrink(self):
+        Hardshrink_layer = bst.nn.Hardshrink(lambd=1)
+        input = bst.random.randn(2)
+        output = Hardshrink_layer(input)
+
+    def test_LeakyReLU(self):
+        LeakyReLU_layer = bst.nn.LeakyReLU()
+        input = bst.random.randn(2)
+        output = LeakyReLU_layer(input)
+
+    def test_LogSigmoid(self):
+        LogSigmoid_layer = bst.nn.LogSigmoid()
+        input = bst.random.randn(2)
+        output = LogSigmoid_layer(input)
+
+    def test_Softplus(self):
+        Softplus_layer = bst.nn.Softplus()
+        input = bst.random.randn(2)
+        output = Softplus_layer(input)
+
+    def test_Softshrink(self):
+        Softshrink_layer = bst.nn.Softshrink(lambd=1)
+        input = bst.random.randn(2)
+        output = Softshrink_layer(input)
+
+    def test_PReLU(self):
+        PReLU_layer = bst.nn.PReLU(num_parameters=2, init=0.5)
+        input = bst.random.randn(2)
+        output = PReLU_layer(input)
+
+    def test_Softsign(self):
+        Softsign_layer = bst.nn.Softsign()
+        input = bst.random.randn(2)
+        output = Softsign_layer(input)
+
+    def test_Tanhshrink(self):
+        Tanhshrink_layer = bst.nn.Tanhshrink()
+        input = bst.random.randn(2)
+        output = Tanhshrink_layer(input)
+
+    def test_Softmin(self):
+        Softmin_layer = bst.nn.Softmin(dim=2)
+        input = bst.random.randn(2, 3, 4)
+        output = Softmin_layer(input)
+
+    def test_Softmax(self):
+        Softmax_layer = bst.nn.Softmax(dim=2)
+        input = bst.random.randn(2, 3, 4)
+        output = Softmax_layer(input)
+
+    def test_Softmax2d(self):
+        Softmax2d_layer = bst.nn.Softmax2d()
+        input = bst.random.randn(2, 3, 12, 13)
+        output = Softmax2d_layer(input)
+
+    def test_LogSoftmax(self):
+        LogSoftmax_layer = bst.nn.LogSoftmax(dim=2)
+        input = bst.random.randn(2, 3, 4)
+        output = LogSoftmax_layer(input)
+
+
+if __name__ == '__main__':
+    absltest.main()

brainstate/nn/_exp_euler.py

@@ -0,0 +1,97 @@
+# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+
+from __future__ import annotations
+
+from typing import Callable
+
+import brainunit as u
+import jax.numpy as jnp
+
+from brainstate import environ, random
+from brainstate.augment import vector_grad
+
+__all__ = [
+    'exp_euler_step',
+]
+
+
+def exp_euler_step(
+    fn: Callable, *args, **kwargs
+):
+    """
+    One-step Exponential Euler method for solving ODEs.
+
+    Examples
+    --------
+
+    >>> def fun(x, t):
+    ...     return -x
+    >>> x = 1.0
+    >>> exp_euler_step(fun, x, None)
+
+    If the variable ( $x$ ) has units of ( $[X]$ ), then the drift term ( $\text{drift_fn}(x)$ ) should
+    have units of ( $[X]/[T]$ ), where ( $[T]$ ) is the unit of time.
+
+    If the variable ( x ) has units of ( [X] ), then the diffusion term ( \text{diffusion_fn}(x) )
+    should have units of ( [X]/\sqrt{[T]} ).
+
+    Args:
+      fun: Callable. The function to be solved.
+      diffusion: Callable. The diffusion function.
+      *args: The input arguments.
+      drift: Callable. The drift function.
+
+    Returns:
+      The one-step solution of the ODE.
+    """
+    assert callable(fn), 'The input function should be callable.'
+    assert len(args) > 0, 'The input arguments should not be empty.'
+    if callable(args[0]):
+        diffusion = args[0]
+        args = args[1:]
+    else:
+        diffusion = None
+    assert len(args) > 0, 'The input arguments should not be empty.'
+    if u.math.get_dtype(args[0]) not in [jnp.float32, jnp.float64, jnp.float16, jnp.bfloat16]:
+        raise ValueError(
+            f'The input data type should be float64, float32, float16, or bfloat16 '
+            f'when using Exponential Euler method. But we got {args[0].dtype}.'
+        )
+    dt = environ.get('dt')
+    linear, derivative = vector_grad(fn, argnums=0, return_value=True)(*args, **kwargs)
+    linear = u.Quantity(u.get_mantissa(linear), u.get_unit(derivative) / u.get_unit(linear))
+    phi = u.math.exprel(dt * linear)
+    x_next = args[0] + dt * phi * derivative
+
+    if diffusion is not None:
+        # unit checking
+        diffusion = diffusion(*args, **kwargs)
+        time_unit = u.get_unit(dt)
+        drift_unit = u.get_unit(derivative)
+        diffusion_unit = u.get_unit(diffusion)
+        # if drift_unit.is_unitless:
+        #   assert diffusion_unit.is_unitless, 'The diffusion term should be unitless when the drift term is unitless.'
+        # else:
+        #   u.fail_for_dimension_mismatch(
+        #     drift_unit, diffusion_unit * time_unit ** 0.5,
+        #     "Drift unit is {drift}, diffusion unit is {diffusion}, ",
+        #     drift=drift_unit, diffusion=diffusion_unit * time_unit ** 0.5
+        #   )
+
+        # diffusion
+        x_next += diffusion * u.math.sqrt(dt) * random.randn_like(args[0])
+    return x_next

brainstate/nn/_exp_euler_test.py

@@ -0,0 +1,36 @@
+# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+from __future__ import annotations
+
+import unittest
+
+import brainunit as u
+
+import brainstate as bst
+
+
+class TestExpEuler(unittest.TestCase):
+    def test1(self):
+        def fun(x, tau):
+            return -x / tau
+
+        with bst.environ.context(dt=0.1):
+            with self.assertRaises(AssertionError):
+                r = bst.nn.exp_euler_step(fun, 1.0 * u.mV, 1. * u.ms)
+
+        with bst.environ.context(dt=1. * u.ms):
+            r = bst.nn.exp_euler_step(fun, 1.0 * u.mV, 1. * u.ms)
+            print(r)

brainstate/nn/_interaction/__init__.py

@@ -0,0 +1,32 @@
+# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+from ._connections import *
+from ._connections import __all__ as connections_all
+from ._embedding import *
+from ._embedding import __all__ as embed_all
+from ._normalizations import *
+from ._normalizations import __all__ as normalizations_all
+from ._poolings import *
+from ._poolings import __all__ as poolings_all
+
+__all__ = (
+    connections_all +
+    normalizations_all +
+    poolings_all +
+    embed_all
+)
+
+del connections_all, normalizations_all, poolings_all, embed_all