brainstate 0.0.2.post20241009__py2.py3-none-any.whl → 0.1.0__py2.py3-none-any.whl

brainstate/nn/_elementwise/_dropout.py

@@ -0,0 +1,418 @@
+# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+
+from __future__ import annotations
+
+from functools import partial
+from typing import Optional
+
+import brainunit as u
+import jax.numpy as jnp
+
+from brainstate import random, environ, init
+from brainstate._state import ShortTermState
+from brainstate.nn._module import ElementWiseBlock
+from brainstate.typing import Size
+
+__all__ = [
+    'DropoutFixed', 'Dropout', 'Dropout1d', 'Dropout2d', 'Dropout3d',
+    'AlphaDropout', 'FeatureAlphaDropout',
+]
+
+
+class Dropout(ElementWiseBlock):
+    """A layer that stochastically ignores a subset of inputs each training step.
+
+    In training, to compensate for the fraction of input values dropped (`rate`),
+    all surviving values are multiplied by `1 / (1 - rate)`.
+
+    This layer is active only during training (``mode=brainstate.mixin.Training``). In other
+    circumstances it is a no-op.
+
+    .. [1] Srivastava, Nitish, et al. "Dropout: a simple way to prevent
+           neural networks from overfitting." The journal of machine learning
+           research 15.1 (2014): 1929-1958.
+
+    Args:
+      prob: Probability to keep element of the tensor.
+      mode: Mode. The computation mode of the object.
+      name: str. The name of the dynamic system.
+
+    """
+    __module__ = 'brainstate.nn'
+
+    def __init__(
+        self,
+        prob: float = 0.5,
+        name: Optional[str] = None
+    ) -> None:
+        super().__init__(name=name)
+        assert 0. <= prob <= 1., f"Dropout probability must be in the range [0, 1]. But got {prob}."
+        self.prob = prob
+
+    def __call__(self, x):
+        dtype = u.math.get_dtype(x)
+        fit_phase = environ.get('fit', desc='Whether this is a fitting process. Bool.')
+        if fit_phase and self.prob < 1.:
+            keep_mask = random.bernoulli(self.prob, x.shape)
+            return jnp.where(keep_mask,
+                             jnp.asarray(x / self.prob, dtype=dtype),
+                             jnp.asarray(0., dtype=dtype))
+        else:
+            return x
+
+
+class _DropoutNd(ElementWiseBlock):
+    __module__ = 'brainstate.nn'
+    prob: float
+    channel_axis: int
+    minimal_dim: int
+
+    def __init__(
+        self,
+        prob: float = 0.5,
+        channel_axis: int = -1,
+        name: Optional[str] = None
+    ) -> None:
+        super().__init__(name=name)
+        assert 0. <= prob < 1., f"Dropout probability must be in the range [0, 1). But got {prob}."
+        self.prob = prob
+        self.channel_axis = channel_axis
+
+    def __call__(self, x):
+
+        # check input shape
+        inp_dim = u.math.ndim(x)
+        if inp_dim not in (self.minimal_dim, self.minimal_dim + 1):
+            raise RuntimeError(f"dropout1d: Expected {self.minimal_dim}D or {self.minimal_dim + 1}D input, "
+                               f"but received a {inp_dim}D input. {self._get_msg(x)}")
+        is_not_batched = self.minimal_dim
+        if is_not_batched:
+            channel_axis = self.channel_axis if self.channel_axis >= 0 else (x.ndim + self.channel_axis)
+            mask_shape = [(dim if i == channel_axis else 1) for i, dim in enumerate(x.shape)]
+        else:
+            channel_axis = (self.channel_axis + 1) if self.channel_axis >= 0 else (x.ndim + self.channel_axis)
+            assert channel_axis != 0, f"Channel axis must not be 0. But got {self.channel_axis}."
+            mask_shape = [(dim if i in (channel_axis, 0) else 1) for i, dim in enumerate(x.shape)]
+
+        # get fit phase
+        fit_phase = environ.get('fit', desc='Whether this is a fitting process. Bool.')
+
+        # generate mask
+        if fit_phase:
+            dtype = u.math.get_dtype(x)
+            keep_mask = jnp.broadcast_to(random.bernoulli(self.prob, mask_shape), x.shape)
+            return jnp.where(keep_mask,
+                             jnp.asarray(x / self.prob, dtype=dtype),
+                             jnp.asarray(0., dtype=dtype))
+        else:
+            return x
+
+    def _get_msg(self, x):
+        return ''
+
+
+class Dropout1d(_DropoutNd):
+    r"""Randomly zero out entire channels (a channel is a 1D feature map,
+    e.g., the :math:`j`-th channel of the :math:`i`-th sample in the
+    batched input is a 1D tensor :math:`\text{input}[i, j]`).
+    Each channel will be zeroed out independently on every forward call with
+    probability :attr:`p` using samples from a Bernoulli distribution.
+
+    Usually the input comes from :class:`nn.Conv1d` modules.
+
+    As described in the paper
+    `Efficient Object Localization Using Convolutional Networks`_ ,
+    if adjacent pixels within feature maps are strongly correlated
+    (as is normally the case in early convolution layers) then i.i.d. dropout
+    will not regularize the activations and will otherwise just result
+    in an effective learning rate decrease.
+
+    In this case, :func:`nn.Dropout1d` will help promote independence between
+    feature maps and should be used instead.
+
+    Args:
+        prob: float. probability of an element to be zero-ed.
+
+    Shape:
+        - Input: :math:`(N, C, L)` or :math:`(C, L)`.
+        - Output: :math:`(N, C, L)` or :math:`(C, L)` (same shape as input).
+
+    Examples::
+
+        >>> m = Dropout1d(p=0.2)
+        >>> x = random.randn(20, 32, 16)
+        >>> output = m(x)
+        >>> output.shape
+        (20, 32, 16)
+
+    .. _Efficient Object Localization Using Convolutional Networks:
+       https://arxiv.org/abs/1411.4280
+    """
+    __module__ = 'brainstate.nn'
+    minimal_dim: int = 2
+
+    def _get_msg(self, x):
+        return ("Note that dropout1d exists to provide channel-wise dropout on inputs with 1 "
+                "spatial dimension, a channel dimension, and an optional batch dimension "
+                "(i.e. 2D or 3D inputs).")
+
+
+class Dropout2d(_DropoutNd):
+    r"""Randomly zero out entire channels (a channel is a 2D feature map,
+    e.g., the :math:`j`-th channel of the :math:`i`-th sample in the
+    batched input is a 2D tensor :math:`\text{input}[i, j]`).
+    Each channel will be zeroed out independently on every forward call with
+    probability :attr:`p` using samples from a Bernoulli distribution.
+
+    Usually the input comes from :class:`nn.Conv2d` modules.
+
+    As described in the paper
+    `Efficient Object Localization Using Convolutional Networks`_ ,
+    if adjacent pixels within feature maps are strongly correlated
+    (as is normally the case in early convolution layers) then i.i.d. dropout
+    will not regularize the activations and will otherwise just result
+    in an effective learning rate decrease.
+
+    In this case, :func:`nn.Dropout2d` will help promote independence between
+    feature maps and should be used instead.
+
+    Args:
+        prob: float. probability of an element to be kept.
+
+    Shape:
+        - Input: :math:`(N, C, H, W)` or :math:`(N, C, L)`.
+        - Output: :math:`(N, C, H, W)` or :math:`(N, C, L)` (same shape as input).
+
+    Examples::
+
+        >>> m = Dropout2d(p=0.2)
+        >>> x = random.randn(20, 32, 32, 16)
+        >>> output = m(x)
+
+    .. _Efficient Object Localization Using Convolutional Networks:
+       https://arxiv.org/abs/1411.4280
+    """
+    __module__ = 'brainstate.nn'
+    minimal_dim: int = 3
+
+    def _get_msg(self, x):
+        return ("Note that dropout2d exists to provide channel-wise dropout on inputs with 2 "
+                "spatial dimensions, a channel dimension, and an optional batch dimension "
+                "(i.e. 3D or 4D inputs).")
+
+
+class Dropout3d(_DropoutNd):
+    r"""Randomly zero out entire channels (a channel is a 3D feature map,
+    e.g., the :math:`j`-th channel of the :math:`i`-th sample in the
+    batched input is a 3D tensor :math:`\text{input}[i, j]`).
+    Each channel will be zeroed out independently on every forward call with
+    probability :attr:`p` using samples from a Bernoulli distribution.
+
+    Usually the input comes from :class:`nn.Conv3d` modules.
+
+    As described in the paper
+    `Efficient Object Localization Using Convolutional Networks`_ ,
+    if adjacent pixels within feature maps are strongly correlated
+    (as is normally the case in early convolution layers) then i.i.d. dropout
+    will not regularize the activations and will otherwise just result
+    in an effective learning rate decrease.
+
+    In this case, :func:`nn.Dropout3d` will help promote independence between
+    feature maps and should be used instead.
+
+    Args:
+        prob: float. probability of an element to be kept.
+
+    Shape:
+        - Input: :math:`(N, C, D, H, W)` or :math:`(C, D, H, W)`.
+        - Output: :math:`(N, C, D, H, W)` or :math:`(C, D, H, W)` (same shape as input).
+
+    Examples::
+
+        >>> m = Dropout3d(p=0.2)
+        >>> x = random.randn(20, 16, 4, 32, 32)
+        >>> output = m(x)
+
+    .. _Efficient Object Localization Using Convolutional Networks:
+       https://arxiv.org/abs/1411.4280
+    """
+    __module__ = 'brainstate.nn'
+    minimal_dim: int = 4
+
+    def _get_msg(self, x):
+        return ("Note that dropout3d exists to provide channel-wise dropout on inputs with 3 "
+                "spatial dimensions, a channel dimension, and an optional batch dimension "
+                "(i.e. 4D or 5D inputs).")
+
+
+class AlphaDropout(_DropoutNd):
+    r"""Applies Alpha Dropout over the input.
+
+    Alpha Dropout is a type of Dropout that maintains the self-normalizing
+    property.
+    For an input with zero mean and unit standard deviation, the output of
+    Alpha Dropout maintains the original mean and standard deviation of the
+    input.
+    Alpha Dropout goes hand-in-hand with SELU activation function, which ensures
+    that the outputs have zero mean and unit standard deviation.
+
+    During training, it randomly masks some of the elements of the input
+    tensor with probability *p* using samples from a bernoulli distribution.
+    The elements to masked are randomized on every forward call, and scaled
+    and shifted to maintain zero mean and unit standard deviation.
+
+    During evaluation the module simply computes an identity function.
+
+    More details can be found in the paper `Self-Normalizing Neural Networks`_ .
+
+    Args:
+        prob: float. probability of an element to be kept.
+
+    Shape:
+        - Input: :math:`(*)`. Input can be of any shape
+        - Output: :math:`(*)`. Output is of the same shape as input
+
+    Examples::
+
+        >>> m = AlphaDropout(p=0.2)
+        >>> x = random.randn(20, 16)
+        >>> output = m(x)
+
+    .. _Self-Normalizing Neural Networks: https://arxiv.org/abs/1706.02515
+    """
+    __module__ = 'brainstate.nn'
+
+    def forward(self, x):
+        return F.alpha_dropout(x, self.p, self.training)
+
+
+class FeatureAlphaDropout(_DropoutNd):
+    r"""Randomly masks out entire channels (a channel is a feature map,
+    e.g. the :math:`j`-th channel of the :math:`i`-th sample in the batch input
+    is a tensor :math:`\text{input}[i, j]`) of the input tensor). Instead of
+    setting activations to zero, as in regular Dropout, the activations are set
+    to the negative saturation value of the SELU activation function. More details
+    can be found in the paper `Self-Normalizing Neural Networks`_ .
+
+    Each element will be masked independently for each sample on every forward
+    call with probability :attr:`p` using samples from a Bernoulli distribution.
+    The elements to be masked are randomized on every forward call, and scaled
+    and shifted to maintain zero mean and unit variance.
+
+    Usually the input comes from :class:`nn.AlphaDropout` modules.
+
+    As described in the paper
+    `Efficient Object Localization Using Convolutional Networks`_ ,
+    if adjacent pixels within feature maps are strongly correlated
+    (as is normally the case in early convolution layers) then i.i.d. dropout
+    will not regularize the activations and will otherwise just result
+    in an effective learning rate decrease.
+
+    In this case, :func:`nn.AlphaDropout` will help promote independence between
+    feature maps and should be used instead.
+
+    Args:
+        prob: float. probability of an element to be kept.
+
+    Shape:
+        - Input: :math:`(N, C, D, H, W)` or :math:`(C, D, H, W)`.
+        - Output: :math:`(N, C, D, H, W)` or :math:`(C, D, H, W)` (same shape as input).
+
+    Examples::
+
+        >>> m = FeatureAlphaDropout(p=0.2)
+        >>> x = random.randn(20, 16, 4, 32, 32)
+        >>> output = m(x)
+
+    .. _Self-Normalizing Neural Networks: https://arxiv.org/abs/1706.02515
+    .. _Efficient Object Localization Using Convolutional Networks:
+       https://arxiv.org/abs/1411.4280
+    """
+    __module__ = 'brainstate.nn'
+
+    def forward(self, x):
+        return F.feature_alpha_dropout(x, self.p, self.training)
+
+
+class DropoutFixed(ElementWiseBlock):
+    """
+    A dropout layer with the fixed dropout mask along the time axis once after initialized.
+
+    In training, to compensate for the fraction of input values dropped (`rate`),
+    all surviving values are multiplied by `1 / (1 - rate)`.
+
+    This layer is active only during training (``mode=brainstate.mixin.Training``). In other
+    circumstances it is a no-op.
+
+    .. [1] Srivastava, Nitish, et al. "Dropout: a simple way to prevent
+           neural networks from overfitting." The journal of machine learning
+           research 15.1 (2014): 1929-1958.
+
+    .. admonition:: Tip
+        :class: tip
+
+        This kind of Dropout is firstly described in `Enabling Spike-based Backpropagation for Training Deep Neural
+        Network Architectures <https://arxiv.org/abs/1903.06379>`_:
+
+        There is a subtle difference in the way dropout is applied in SNNs compared to ANNs. In ANNs, each epoch of
+        training has several iterations of mini-batches. In each iteration, randomly selected units (with dropout ratio of :math:`p`)
+        are disconnected from the network while weighting by its posterior probability (:math:`1-p`). However, in SNNs, each
+        iteration has more than one forward propagation depending on the time length of the spike train. We back-propagate
+        the output error and modify the network parameters only at the last time step. For dropout to be effective in
+        our training method, it has to be ensured that the set of connected units within an iteration of mini-batch
+        data is not changed, such that the neural network is constituted by the same random subset of units during
+        each forward propagation within a single iteration. On the other hand, if the units are randomly connected at
+        each time-step, the effect of dropout will be averaged out over the entire forward propagation time within an
+        iteration. Then, the dropout effect would fade-out once the output error is propagated backward and the parameters
+        are updated at the last time step. Therefore, we need to keep the set of randomly connected units for the entire
+        time window within an iteration.
+
+    Args:
+      in_size: The size of the input tensor.
+      prob: Probability to keep element of the tensor.
+      mode: Mode. The computation mode of the object.
+      name: str. The name of the dynamic system.
+    """
+    __module__ = 'brainstate.nn'
+
+    def __init__(
+        self,
+        in_size: Size,
+        prob: float = 0.5,
+        name: Optional[str] = None
+    ) -> None:
+        super().__init__(name=name)
+        assert 0. <= prob < 1., f"Dropout probability must be in the range [0, 1). But got {prob}."
+        self.prob = prob
+        self.in_size = in_size
+        self.out_size = in_size
+
+    def init_state(self, batch_size=None, **kwargs):
+        self.mask = ShortTermState(init.param(partial(random.bernoulli, self.prob), self.in_size, batch_size))
+
+    def update(self, x):
+        dtype = u.math.get_dtype(x)
+        fit_phase = environ.get('fit', desc='Whether this is a fitting process. Bool.')
+        if fit_phase:
+            if self.mask.value.shape != x.shape:
+                raise ValueError(f"Input shape {x.shape} does not match the mask shape {self.mask.value.shape}. "
+                                 f"Please call `init_state()` method first.")
+            return jnp.where(self.mask.value,
+                             jnp.asarray(x / self.prob, dtype=dtype),
+                             jnp.asarray(0., dtype=dtype))
+        else:
+            return x

brainstate/nn/_elementwise/_dropout_test.py

@@ -0,0 +1,100 @@
+# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+
+import unittest
+
+import numpy as np
+
+import brainstate as bst
+
+
+class TestDropout(unittest.TestCase):
+
+    def test_dropout(self):
+        # Create a Dropout layer with a dropout rate of 0.5
+        dropout_layer = bst.nn.Dropout(0.5)
+
+        # Input data
+        input_data = np.array([1.0, 2.0, 3.0, 4.0, 5.0])
+
+        with bst.environ.context(fit=True):
+            # Apply dropout
+            output_data = dropout_layer(input_data)
+
+            # Check that the output has the same shape as the input
+            self.assertEqual(input_data.shape, output_data.shape)
+
+            # Check that some elements are zeroed out
+            self.assertTrue(np.any(output_data == 0))
+
+            # Check that the non-zero elements are scaled by 1/(1-rate)
+            scale_factor = 1 / (1 - 0.5)
+            non_zero_elements = output_data[output_data != 0]
+            expected_non_zero_elements = input_data[output_data != 0] * scale_factor
+            np.testing.assert_almost_equal(non_zero_elements, expected_non_zero_elements)
+
+    def test_DropoutFixed(self):
+        dropout_layer = bst.nn.DropoutFixed(in_size=(2, 3), prob=0.5)
+        dropout_layer.init_state(batch_size=2)
+        input_data = np.random.randn(2, 2, 3)
+        with bst.environ.context(fit=True):
+            output_data = dropout_layer.update(input_data)
+        self.assertEqual(input_data.shape, output_data.shape)
+        self.assertTrue(np.any(output_data == 0))
+        scale_factor = 1 / (1 - 0.5)
+        non_zero_elements = output_data[output_data != 0]
+        expected_non_zero_elements = input_data[output_data != 0] * scale_factor
+        np.testing.assert_almost_equal(non_zero_elements, expected_non_zero_elements)
+
+    def test_Dropout1d(self):
+        dropout_layer = bst.nn.Dropout1d(prob=0.5)
+        input_data = np.random.randn(2, 3, 4)
+        with bst.environ.context(fit=True):
+            output_data = dropout_layer(input_data)
+        self.assertEqual(input_data.shape, output_data.shape)
+        self.assertTrue(np.any(output_data == 0))
+        scale_factor = 1 / (1 - 0.5)
+        non_zero_elements = output_data[output_data != 0]
+        expected_non_zero_elements = input_data[output_data != 0] * scale_factor
+        np.testing.assert_almost_equal(non_zero_elements, expected_non_zero_elements, decimal=4)
+
+    def test_Dropout2d(self):
+        dropout_layer = bst.nn.Dropout2d(prob=0.5)
+        input_data = np.random.randn(2, 3, 4, 5)
+        with bst.environ.context(fit=True):
+            output_data = dropout_layer(input_data)
+        self.assertEqual(input_data.shape, output_data.shape)
+        self.assertTrue(np.any(output_data == 0))
+        scale_factor = 1 / (1 - 0.5)
+        non_zero_elements = output_data[output_data != 0]
+        expected_non_zero_elements = input_data[output_data != 0] * scale_factor
+        np.testing.assert_almost_equal(non_zero_elements, expected_non_zero_elements, decimal=4)
+
+    def test_Dropout3d(self):
+        dropout_layer = bst.nn.Dropout3d(prob=0.5)
+        input_data = np.random.randn(2, 3, 4, 5, 6)
+        with bst.environ.context(fit=True):
+            output_data = dropout_layer(input_data)
+        self.assertEqual(input_data.shape, output_data.shape)
+        self.assertTrue(np.any(output_data == 0))
+        scale_factor = 1 / (1 - 0.5)
+        non_zero_elements = output_data[output_data != 0]
+        expected_non_zero_elements = input_data[output_data != 0] * scale_factor
+        np.testing.assert_almost_equal(non_zero_elements, expected_non_zero_elements, decimal=4)
+
+
+if __name__ == '__main__':
+    unittest.main()