brainstate 0.0.2.post20241009__py2.py3-none-any.whl → 0.1.0__py2.py3-none-any.whl

brainstate/nn/_dynamics/_projection_base.py

@@ -0,0 +1,346 @@
+# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+from __future__ import annotations
+
+from typing import Union, Callable
+
+from brainstate._state import State
+from brainstate.mixin import AlignPost, ParamDescriber, BindCondData, JointTypes
+from brainstate.nn._collective_ops import call_order
+from brainstate.nn._module import Module
+from brainstate.util._others import get_unique_name
+from ._dynamics_base import Dynamics, maybe_init_prefetch, Prefetch, PrefetchDelayAt
+from ._synouts import SynOut
+
+__all__ = [
+    'AlignPostProj',
+    'DeltaProj',
+    'CurrentProj',
+]
+
+
+class Interaction(Module):
+    __module__ = 'brainstate.nn'
+
+
+def _check_modules(*modules):
+    # checking modules
+    for module in modules:
+        if not callable(module) and not isinstance(module, State):
+            raise TypeError(
+                f'The module should be a callable function or a brainstate.State, but got {module}.'
+            )
+    return tuple(modules)
+
+
+def call_module(module, *args, **kwargs):
+    if callable(module):
+        return module(*args, **kwargs)
+    elif isinstance(module, State):
+        return module.value
+    else:
+        raise TypeError(
+            f'The module should be a callable function or a brainstate.State, but got {module}.'
+        )
+
+
+def is_instance(x, cls) -> bool:
+    return isinstance(x, cls)
+
+
+def get_post_repr(syn, out):
+    return f'{syn.identifier} // {out.identifier}'
+
+
+def align_post_add_bef_update(
+    syn_desc: ParamDescriber[AlignPost],
+    out_desc: ParamDescriber[BindCondData],
+    post: Dynamics,
+    proj_name: str
+):
+    # synapse and output initialization
+    _post_repr = get_post_repr(syn_desc, out_desc)
+    if not post._has_before_update(_post_repr):
+        syn_cls = syn_desc()
+        out_cls = out_desc()
+
+        # synapse and output initialization
+        post.add_current_input(proj_name, out_cls)
+        post._add_before_update(_post_repr, _AlignPost(syn_cls, out_cls))
+    syn = post._get_before_update(_post_repr).syn
+    out = post._get_before_update(_post_repr).out
+    return syn, out
+
+
+class _AlignPost(Module):
+    def __init__(
+        self,
+        syn: Dynamics,
+        out: BindCondData
+    ):
+        super().__init__()
+        self.syn = syn
+        self.out = out
+
+    def update(self, *args, **kwargs):
+        self.out.bind_cond(self.syn(*args, **kwargs))
+
+
+class AlignPostProj(Interaction):
+    """
+    Full-chain synaptic projection with the align-post reduction and the automatic synapse merging.
+
+    The ``full-chain`` means that the model needs to provide all information needed for a projection,
+    including ``pre`` -> ``delay`` -> ``comm`` -> ``syn`` -> ``out`` -> ``post``.
+
+    The ``align-post`` means that the synaptic variables have the same dimension as the post-synaptic neuron group.
+
+    The ``merging`` means that the same delay model is shared by all synapses, and the synapse model with same
+    parameters (such like time constants) will also share the same synaptic variables.
+
+    All align-post projection models prefer to use the event-driven computation mode. This means that the
+    ``comm`` model should be the event-driven model.
+
+    Moreover, it's worth noting that ``FullProjAlignPost`` has a different updating order with all align-pre
+    projection models. The updating order of align-post projections is ``spikes`` -> ``comm`` -> ``syn`` -> ``out``.
+    While, the updating order of all align-pre projection models is usually ``spikes`` -> ``syn`` -> ``comm`` -> ``out``.
+
+
+    #  brainstate.nn.AlignPostProj(
+    #       LIF().prefetch('V').delay.at('I'), bst.surrogate.ReluGrad(), comm, syn, out, post
+    #  )
+
+    Args:
+      pre: The pre-synaptic neuron group.
+      delay: The synaptic delay.
+      comm: The synaptic communication.
+      syn: The synaptic dynamics.
+      out: The synaptic output.
+      post: The post-synaptic neuron group.
+    """
+    __module__ = 'brainstate.nn'
+
+    def __init__(
+        self,
+        *modules,
+        comm: Callable,
+        syn: Union[ParamDescriber[AlignPost], AlignPost],
+        out: Union[ParamDescriber[SynOut], SynOut],
+        post: Dynamics,
+    ):
+        super().__init__(name=get_unique_name(self.__class__.__name__))
+
+        # checking modules
+        self.modules = _check_modules(*modules)
+
+        # checking communication model
+        if not callable(comm):
+            raise TypeError(
+                f'The communication should be an instance of callable function, but got {comm}.'
+            )
+
+        # checking synapse and output models
+        if is_instance(syn, ParamDescriber[AlignPost]):
+            if not is_instance(out, ParamDescriber[SynOut]):
+                raise TypeError(
+                    f'The output should be an instance of describer {ParamDescriber[SynOut]} when '
+                    f'the synapse is a describer, but we got {out}.'
+                )
+            merging = True
+        else:
+            if not is_instance(out, SynOut):
+                raise TypeError(
+                    f'The output should be an instance of {SynOut} when the synapse is '
+                    f'not a describer, but we got {out}.'
+                )
+            merging = False
+        self.merging = merging
+
+        # checking post model
+        if not is_instance(post, Dynamics):
+            raise TypeError(
+                f'The post should be an instance of {Dynamics}, but got {post}.'
+            )
+
+        if merging:
+            # synapse and output initialization
+            syn, out = align_post_add_bef_update(syn_desc=syn, out_desc=out, post=post, proj_name=self.name)
+        else:
+            post.add_current_input(self.name, out)
+
+        # references
+        self.comm = comm
+        self.syn: JointTypes[Dynamics, AlignPost] = syn
+        self.out: BindCondData = out
+        self.post: Dynamics = post
+
+    @call_order(2)
+    def init_state(self, *args, **kwargs):
+        for module in self.modules:
+            maybe_init_prefetch(module, *args, **kwargs)
+
+    def update(self, *args):
+        # call all modules
+        for module in self.modules:
+            x = call_module(module, *args)
+            args = (x,)
+        # communication module
+        x = self.comm(*args)
+        # add synapse input
+        self.syn.add_delta_input(self.name, x)
+        if not self.merging:
+            # synapse and output interaction
+            conductance = self.syn()
+            self.out.bind_cond(conductance)
+
+
+class DeltaProj(Interaction):
+    """Full-chain of the synaptic projection for the Delta synapse model.
+
+    The synaptic projection requires the input is the spiking data, otherwise
+    the synapse is not the Delta synapse model.
+
+    The ``full-chain`` means that the model needs to provide all information needed for a projection,
+    including ``pre`` -> ``delay`` -> ``comm`` -> ``post``.
+
+    **Model Descriptions**
+
+    .. math::
+
+        I_{syn} (t) = \sum_{j\in C} g_{\mathrm{max}} * \delta(t-t_j-D)
+
+    where :math:`g_{\mathrm{max}}` denotes the chemical synaptic strength,
+    :math:`t_j` the spiking moment of the presynaptic neuron :math:`j`,
+    :math:`C` the set of neurons connected to the post-synaptic neuron,
+    and :math:`D` the transmission delay of chemical synapses.
+    For simplicity, the rise and decay phases of post-synaptic currents are
+    omitted in this model.
+
+    #     brainstate.nn.DeltaInteraction(
+    #       LIF().prefetch('V'), bst.surrogate.ReluGrad(), comm, post
+    #     )
+
+    Args:
+      pre: The pre-synaptic neuron group.
+      delay: The synaptic delay.
+      comm: DynamicalSystem. The synaptic communication.
+      post: DynamicalSystem. The post-synaptic neuron group.
+    """
+
+    __module__ = 'brainstate.nn'
+
+    def __init__(self, *modules, comm: Callable, post: Dynamics, label=None):
+        super().__init__(name=get_unique_name(self.__class__.__name__))
+
+        self.label = label
+
+        # checking modules
+        self.modules = _check_modules(*modules)
+
+        # checking communication model
+        if not callable(comm):
+            raise TypeError(
+                f'The communication should be an instance of callable function, but got {comm}.'
+            )
+        self.comm = comm
+
+        # post model
+        if not isinstance(post, Dynamics):
+            raise TypeError(
+                f'The post should be an instance of {Dynamics}, but got {post}.'
+            )
+        self.post = post
+
+    @call_order(2)
+    def init_state(self, *args, **kwargs):
+        for module in self.modules:
+            maybe_init_prefetch(module, *args, **kwargs)
+
+    def update(self, *x):
+        for module in self.modules:
+            x = (call_module(module, *x),)
+        assert len(x) == 1, f'The output of the modules should be a single value, but got {x}.'
+        x = self.comm(x[0])
+        self.post.add_delta_input(self.name, x, label=self.label)
+
+
+class CurrentProj(Interaction):
+    """
+    Full-chain synaptic projection with the align-pre reduction and delay+synapse updating and merging.
+
+    The ``full-chain`` means that the model needs to provide all information needed for a projection,
+    including ``pre`` -> ``delay`` -> ``syn`` -> ``comm`` -> ``out`` -> ``post``.
+    Note here, compared to ``FullProjAlignPreSD``, the ``delay`` and ``syn`` are exchanged.
+
+    The ``align-pre`` means that the synaptic variables have the same dimension as the pre-synaptic neuron group.
+
+    The ``delay+synapse updating`` means that the projection first delivers the pre neuron output (usually the
+    spiking)  to the delay model, then computes the synapse states, and finally computes the synaptic current.
+
+    The ``merging`` means that the same delay model is shared by all synapses, and the synapse model with same
+    parameters (such like time constants) will also share the same synaptic variables.
+
+    Neither ``FullProjAlignPreDS`` nor ``FullProjAlignPreSD`` facilitates the event-driven computation.
+    This is because the ``comm`` is computed after the synapse state, which is a floating-point number, rather
+    than the spiking. To facilitate the event-driven computation, please use align post projections.
+
+    #    bint.CurrentInteraction(
+    #       LIF().align_pre(bst.nn.Expon.desc()).prefetch('g'), comm, out, post
+    #    )
+
+    Args:
+      prefetch: The synaptic dynamics.
+      comm: The synaptic communication.
+      out: The synaptic output.
+      post: The post-synaptic neuron group.
+    """
+    __module__ = 'brainstate.nn'
+
+    def __init__(
+        self,
+        prefetch: Union[Prefetch, PrefetchDelayAt],
+        comm: Callable,
+        out: SynOut,
+        post: Dynamics,
+    ):
+        super().__init__(name=get_unique_name(self.__class__.__name__))
+
+        # pre-synaptic neuron group
+        if not isinstance(prefetch, (Prefetch, PrefetchDelayAt)):
+            raise TypeError(f'The pre should be a Prefetch or PrefetchDelayAt, but got {prefetch}.')
+        self.prefetch = prefetch
+
+        # check out
+        if not isinstance(out, SynOut):
+            raise TypeError(f'The out should be a SynOut, but got {out}.')
+        self.out = out
+
+        # check post
+        if not isinstance(post, Dynamics):
+            raise TypeError(f'The post should be a Dynamics, but got {post}.')
+        self.post = post
+        post.add_current_input(self.name, out)
+
+        # output initialization
+        self.comm = comm
+
+    @call_order(2)
+    def init_state(self, *args, **kwargs):
+        maybe_init_prefetch(self.prefetch, *args, **kwargs)
+
+    def update(self, *x):
+        x = self.prefetch(*x)
+        x = self.comm(x)
+        self.out.bind_cond(x)