@jbrowse/plugin-alignments 1.7.9 → 2.0.0

package/dist/BamAdapter/MismatchParser.js.map

@@ -0,0 +1 @@
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package/dist/BamAdapter/configSchema.js

@@ -1,48 +1,35 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var mobx_state_tree_1 = require("mobx-state-tree");
+exports.default = mobx_state_tree_1.types.late(function () {
+    return (0, configuration_1.ConfigurationSchema)('BamAdapter', {
+        bamLocation: {
+            type: 'fileLocation',
+            defaultValue: { uri: '/path/to/my.bam', locationType: 'UriLocation' },
+        },
+        index: (0, configuration_1.ConfigurationSchema)('BamIndex', {
+            indexType: {
+                model: mobx_state_tree_1.types.enumeration('IndexType', ['BAI', 'CSI']),
+                type: 'stringEnum',
+                defaultValue: 'BAI',
+            },
+            location: {
+                type: 'fileLocation',
+                defaultValue: {
+                    uri: '/path/to/my.bam.bai',
+                    locationType: 'UriLocation',
+                },
+            },
+        }),
+        fetchSizeLimit: {
+            type: 'number',
+            defaultValue: 5000000,
+        },
+        sequenceAdapter: {
+            type: 'frozen',
+            defaultValue: null,
+        },
+    }, { explicitlyTyped: true });
 });
-exports.default = void 0;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _default = _mobxStateTree.types.late(function () {
-  return (0, _configuration.ConfigurationSchema)('BamAdapter', {
-    bamLocation: {
-      type: 'fileLocation',
-      defaultValue: {
-        uri: '/path/to/my.bam',
-        locationType: 'UriLocation'
-      }
-    },
-    index: (0, _configuration.ConfigurationSchema)('BamIndex', {
-      indexType: {
-        model: _mobxStateTree.types.enumeration('IndexType', ['BAI', 'CSI']),
-        type: 'stringEnum',
-        defaultValue: 'BAI'
-      },
-      location: {
-        type: 'fileLocation',
-        defaultValue: {
-          uri: '/path/to/my.bam.bai',
-          locationType: 'UriLocation'
-        }
-      }
-    }),
-    fetchSizeLimit: {
-      type: 'number',
-      defaultValue: 5000000
-    },
-    sequenceAdapter: {
-      type: 'frozen',
-      defaultValue: null
-    }
-  }, {
-    explicitlyTyped: true
-  });
-});
-
-exports.default = _default;
+//# sourceMappingURL=configSchema.js.map

package/dist/BamAdapter/configSchema.js.map

@@ -0,0 +1 @@
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package/dist/BamAdapter/index.js

@@ -1,36 +1,40 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = void 0;
-
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
-
-var _AdapterType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
-
-var _configSchema = _interopRequireDefault(require("./configSchema"));
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-var _default = function _default(pluginManager) {
-  pluginManager.addAdapterType(function () {
-    return new _AdapterType.default({
-      name: 'BamAdapter',
-      configSchema: _configSchema.default,
-      getAdapterClass: function getAdapterClass() {
-        return Promise.resolve().then(function () {
-          return _interopRequireWildcard(require('./BamAdapter'));
-        }).then(function (r) {
-          return r.default;
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
+var configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (function (pluginManager) {
+    pluginManager.addAdapterType(function () {
+        return new AdapterType_1.default({
+            name: 'BamAdapter',
+            configSchema: configSchema_1.default,
+            getAdapterClass: function () { return Promise.resolve().then(function () { return __importStar(require('./BamAdapter')); }).then(function (r) { return r.default; }); },
         });
-      }
     });
-  });
-};
-
-exports.default = _default;
+});
+//# sourceMappingURL=index.js.map

package/dist/BamAdapter/index.js.map

@@ -0,0 +1 @@
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