@jbrowse/plugin-alignments 1.7.9 → 2.0.0

package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js

@@ -1,97 +1,95 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _bam = require("@gmod/bam");
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _BamAdapter2 = _interopRequireDefault(require("../BamAdapter/BamAdapter"));
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var HtsgetBamAdapter = /*#__PURE__*/function (_BamAdapter) {
-  (0, _inherits2.default)(HtsgetBamAdapter, _BamAdapter);
-
-  var _super = _createSuper(HtsgetBamAdapter);
-
-  function HtsgetBamAdapter() {
-    (0, _classCallCheck2.default)(this, HtsgetBamAdapter);
-    return _super.apply(this, arguments);
-  }
-
-  (0, _createClass2.default)(HtsgetBamAdapter, [{
-    key: "configure",
-    value: function () {
-      var _configure = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-        var htsgetBase, htsgetTrackId, bam, adapterConfig;
-        return _regenerator.default.wrap(function _callee$(_context) {
-          while (1) {
-            switch (_context.prev = _context.next) {
-              case 0:
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var bam_1 = require("@gmod/bam");
+var configuration_1 = require("@jbrowse/core/configuration");
+var BamAdapter_1 = __importDefault(require("../BamAdapter/BamAdapter"));
+var HtsgetBamAdapter = /** @class */ (function (_super) {
+    __extends(HtsgetBamAdapter, _super);
+    function HtsgetBamAdapter() {
+        return _super !== null && _super.apply(this, arguments) || this;
+    }
+    HtsgetBamAdapter.prototype.configure = function () {
+        return __awaiter(this, void 0, void 0, function () {
+            var htsgetBase, htsgetTrackId, bam_2, adapterConfig;
+            return __generator(this, function (_a) {
                 if (!this.configured) {
-                  htsgetBase = (0, _configuration.readConfObject)(this.config, 'htsgetBase');
-                  htsgetTrackId = (0, _configuration.readConfObject)(this.config, 'htsgetTrackId');
-                  bam = new _bam.HtsgetFile({
-                    baseUrl: htsgetBase,
-                    trackId: htsgetTrackId
-                  });
-                  adapterConfig = (0, _configuration.readConfObject)(this.config, 'sequenceAdapter');
-
-                  if (adapterConfig && this.getSubAdapter) {
-                    this.configured = this.getSubAdapter(adapterConfig).then(function (_ref) {
-                      var dataAdapter = _ref.dataAdapter;
-                      return {
-                        bam: bam,
-                        sequenceAdapter: dataAdapter
-                      };
+                    htsgetBase = (0, configuration_1.readConfObject)(this.config, 'htsgetBase');
+                    htsgetTrackId = (0, configuration_1.readConfObject)(this.config, 'htsgetTrackId');
+                    bam_2 = new bam_1.HtsgetFile({
+                        baseUrl: htsgetBase,
+                        trackId: htsgetTrackId,
                     });
-                  }
-
-                  this.configured = Promise.resolve({
-                    bam: bam
-                  });
+                    adapterConfig = (0, configuration_1.readConfObject)(this.config, 'sequenceAdapter');
+                    if (adapterConfig && this.getSubAdapter) {
+                        this.configured = this.getSubAdapter(adapterConfig).then(function (_a) {
+                            var dataAdapter = _a.dataAdapter;
+                            return {
+                                bam: bam_2,
+                                sequenceAdapter: dataAdapter,
+                            };
+                        });
+                    }
+                    this.configured = Promise.resolve({ bam: bam_2 });
                 }
-
-                return _context.abrupt("return", this.configured);
-
-              case 2:
-              case "end":
-                return _context.stop();
-            }
-          }
-        }, _callee, this);
-      }));
-
-      function configure() {
-        return _configure.apply(this, arguments);
-      }
-
-      return configure;
-    }()
-  }]);
-  return HtsgetBamAdapter;
-}(_BamAdapter2.default);
-
-exports.default = HtsgetBamAdapter;
+                return [2 /*return*/, this.configured];
+            });
+        });
+    };
+    return HtsgetBamAdapter;
+}(BamAdapter_1.default));
+exports.default = HtsgetBamAdapter;
+//# sourceMappingURL=HtsgetBamAdapter.js.map

package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"HtsgetBamAdapter.js","sourceRoot":"","sources":["../../src/HtsgetBamAdapter/HtsgetBamAdapter.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,iCAA+C;AAC/C,6DAA4D;AAE5D,wEAAiD;AAEjD;IAA8C,oCAAU;IAAxD;;IAyBA,CAAC;IAxBiB,oCAAS,GAAzB;;;;gBACE,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;oBACd,UAAU,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,YAAY,CAAC,CAAA;oBACtD,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,eAAe,CAAC,CAAA;oBAC5D,QAAM,IAAI,gBAAU,CAAC;wBACzB,OAAO,EAAE,UAAU;wBACnB,OAAO,EAAE,aAAa;qBACvB,CAAuB,CAAA;oBAElB,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,CAAC,MAAM,EAAE,iBAAiB,CAAC,CAAA;oBACpE,IAAI,aAAa,IAAI,IAAI,CAAC,aAAa,EAAE;wBACvC,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,IAAI,CACtD,UAAC,EAAe;gCAAb,WAAW,iBAAA;4BACZ,OAAO;gCACL,GAAG,OAAA;gCACH,eAAe,EAAE,WAAqC;6BACvD,CAAA;wBACH,CAAC,CACF,CAAA;qBACF;oBACD,IAAI,CAAC,UAAU,GAAG,OAAO,CAAC,OAAO,CAAC,EAAE,GAAG,OAAA,EAAE,CAAC,CAAA;iBAC3C;gBACD,sBAAO,IAAI,CAAC,UAAU,EAAA;;;KACvB;IACH,uBAAC;AAAD,CAAC,AAzBD,CAA8C,oBAAU,GAyBvD"}

package/dist/HtsgetBamAdapter/configSchema.js

@@ -1,31 +1,21 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var mobx_state_tree_1 = require("mobx-state-tree");
+exports.default = mobx_state_tree_1.types.late(function () {
+    return (0, configuration_1.ConfigurationSchema)('HtsgetBamAdapter', {
+        htsgetBase: {
+            type: 'string',
+            defaultValue: '',
+        },
+        htsgetTrackId: {
+            type: 'string',
+            defaultValue: '',
+        },
+        sequenceAdapter: {
+            type: 'frozen',
+            defaultValue: null,
+        },
+    }, { explicitlyTyped: true });
 });
-exports.default = void 0;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _default = _mobxStateTree.types.late(function () {
-  return (0, _configuration.ConfigurationSchema)('HtsgetBamAdapter', {
-    htsgetBase: {
-      type: 'string',
-      defaultValue: ''
-    },
-    htsgetTrackId: {
-      type: 'string',
-      defaultValue: ''
-    },
-    sequenceAdapter: {
-      type: 'frozen',
-      defaultValue: null
-    }
-  }, {
-    explicitlyTyped: true
-  });
-});
-
-exports.default = _default;
+//# sourceMappingURL=configSchema.js.map

package/dist/HtsgetBamAdapter/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/HtsgetBamAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AACjE,mDAAuC;AAEvC,kBAAe,uBAAK,CAAC,IAAI,CAAC;IACxB,OAAA,IAAA,mCAAmB,EACjB,kBAAkB,EAClB;QACE,UAAU,EAAE;YACV,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,EAAE;SACjB;QACD,aAAa,EAAE;YACb,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,EAAE;SACjB;QACD,eAAe,EAAE;YACf,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,IAAI;SACnB;KACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B;AAjBD,CAiBC,CACF,CAAA"}

package/dist/HtsgetBamAdapter/index.js

@@ -1,42 +1,48 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = void 0;
-
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
-
-var _configSchema = _interopRequireDefault(require("./configSchema"));
-
-var _AdapterType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-var _default = function _default(pluginManager) {
-  pluginManager.addAdapterType(function () {
-    return new _AdapterType.default({
-      name: 'HtsgetBamAdapter',
-      adapterMetadata: {
-        category: null,
-        hiddenFromGUI: true,
-        displayName: null,
-        description: null
-      },
-      configSchema: _configSchema.default,
-      getAdapterClass: function getAdapterClass() {
-        return Promise.resolve().then(function () {
-          return _interopRequireWildcard(require('./HtsgetBamAdapter'));
-        }).then(function (r) {
-          return r.default;
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var configSchema_1 = __importDefault(require("./configSchema"));
+var AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
+exports.default = (function (pluginManager) {
+    pluginManager.addAdapterType(function () {
+        return new AdapterType_1.default({
+            name: 'HtsgetBamAdapter',
+            adapterMetadata: {
+                category: null,
+                hiddenFromGUI: true,
+                displayName: null,
+                description: null,
+            },
+            configSchema: configSchema_1.default,
+            getAdapterClass: function () {
+                return Promise.resolve().then(function () { return __importStar(require('./HtsgetBamAdapter')); }).then(function (r) { return r.default; });
+            },
         });
-      }
     });
-  });
-};
-
-exports.default = _default;
+});
+//# sourceMappingURL=index.js.map

package/dist/HtsgetBamAdapter/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/HtsgetBamAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gEAAyC;AAEzC,gGAAyE;AAEzE,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,cAAc,CAC1B;QACE,OAAA,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,kBAAkB;YACxB,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;gBACjB,WAAW,EAAE,IAAI;aAClB;YACD,YAAY,wBAAA;YACZ,eAAe,EAAE;gBACf,OAAA,iEAAO,oBAAoB,OAAE,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,OAAO,EAAT,CAAS,CAAC;YAAjD,CAAiD;SACpD,CAAC;IAXF,CAWE,CACL,CAAA;AACH,CAAC,EAAA"}

package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js

@@ -1,69 +1,40 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _react = _interopRequireDefault(require("react"));
-
-var _mobxReact = require("mobx-react");
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _ui = require("@jbrowse/core/ui");
-
-var _core = require("@material-ui/core");
-
-var useStyles = (0, _core.makeStyles)(function () {
-  return {
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importDefault(require("react"));
+var mobx_react_1 = require("mobx-react");
+var configuration_1 = require("@jbrowse/core/configuration");
+var ui_1 = require("@jbrowse/core/ui");
+var mui_1 = require("tss-react/mui");
+var useStyles = (0, mui_1.makeStyles)()(function () { return ({
     resizeHandle: {
-      height: 2,
-      position: 'absolute',
-      zIndex: 2
-    }
-  };
-});
-
-function AlignmentsDisplay(_ref) {
-  var model = _ref.model;
-  var PileupDisplay = model.PileupDisplay,
-      SNPCoverageDisplay = model.SNPCoverageDisplay,
-      showPileup = model.showPileup,
-      showCoverage = model.showCoverage;
-  var classes = useStyles();
-  var top = SNPCoverageDisplay.height;
-  return /*#__PURE__*/_react.default.createElement("div", {
-    "data-testid": "display-".concat((0, _configuration.getConf)(model, 'displayId')),
-    style: {
-      position: 'relative'
-    }
-  }, showCoverage ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("div", {
-    "data-testid": "Blockset-snpcoverage"
-  }, /*#__PURE__*/_react.default.createElement(SNPCoverageDisplay.RenderingComponent, {
-    model: SNPCoverageDisplay
-  })), /*#__PURE__*/_react.default.createElement(_ui.ResizeHandle, {
-    onDrag: function onDrag(delta) {
-      SNPCoverageDisplay.setHeight(SNPCoverageDisplay.height + delta);
-      return delta;
+        height: 2,
+        position: 'absolute',
+        zIndex: 2,
     },
-    className: classes.resizeHandle,
-    style: {
-      top: top
-    }
-  })) : null, showPileup ? /*#__PURE__*/_react.default.createElement("div", {
-    "data-testid": "Blockset-pileup",
-    style: {
-      position: 'absolute',
-      top: showCoverage ? SNPCoverageDisplay.height : 0
-    }
-  }, /*#__PURE__*/_react.default.createElement(PileupDisplay.RenderingComponent, {
-    model: PileupDisplay
-  })) : null);
+}); });
+function AlignmentsDisplay(_a) {
+    var model = _a.model;
+    var PileupDisplay = model.PileupDisplay, SNPCoverageDisplay = model.SNPCoverageDisplay, showPileup = model.showPileup, showCoverage = model.showCoverage;
+    var classes = useStyles().classes;
+    var top = SNPCoverageDisplay.height;
+    return (react_1.default.createElement("div", { "data-testid": "display-".concat((0, configuration_1.getConf)(model, 'displayId')), style: { position: 'relative' } },
+        showCoverage ? (react_1.default.createElement(react_1.default.Fragment, null,
+            react_1.default.createElement("div", { "data-testid": "Blockset-snpcoverage" },
+                react_1.default.createElement(SNPCoverageDisplay.RenderingComponent, { model: SNPCoverageDisplay })),
+            react_1.default.createElement(ui_1.ResizeHandle, { onDrag: function (delta) {
+                    SNPCoverageDisplay.setHeight(SNPCoverageDisplay.height + delta);
+                    return delta;
+                }, className: classes.resizeHandle, style: {
+                    top: top,
+                } }))) : null,
+        showPileup ? (react_1.default.createElement("div", { "data-testid": "Blockset-pileup", style: {
+                position: 'absolute',
+                top: showCoverage ? SNPCoverageDisplay.height : 0,
+            } },
+            react_1.default.createElement(PileupDisplay.RenderingComponent, { model: PileupDisplay }))) : null));
 }
-
-var _default = (0, _mobxReact.observer)(AlignmentsDisplay);
-
-exports.default = _default;
+exports.default = (0, mobx_react_1.observer)(AlignmentsDisplay);
+//# sourceMappingURL=AlignmentsDisplay.js.map

package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AlignmentsDisplay.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx"],"names":[],"mappings":";;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,6DAAqD;AACrD,uCAA+C;AAC/C,qCAA0C;AAG1C,IAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,cAAM,OAAA,CAAC;IACpC,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,EANmC,CAMnC,CAAC,CAAA;AAEH,SAAS,iBAAiB,CAAC,EAA4C;QAA1C,KAAK,WAAA;IACxB,IAAA,aAAa,GAAmD,KAAK,cAAxD,EAAE,kBAAkB,GAA+B,KAAK,mBAApC,EAAE,UAAU,GAAmB,KAAK,WAAxB,EAAE,YAAY,GAAK,KAAK,aAAV,CAAU;IACrE,IAAA,OAAO,GAAK,SAAS,EAAE,QAAhB,CAAgB;IAC/B,IAAM,GAAG,GAAG,kBAAkB,CAAC,MAAM,CAAA;IACrC,OAAO,CACL,sDACe,kBAAW,IAAA,uBAAO,EAAC,KAAK,EAAE,WAAW,CAAC,CAAE,EACrD,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QAE9B,YAAY,CAAC,CAAC,CAAC,CACd;YACE,sDAAiB,sBAAsB;gBACrC,8BAAC,kBAAkB,CAAC,kBAAkB,IAAC,KAAK,EAAE,kBAAkB,GAAI,CAChE;YACN,8BAAC,iBAAY,IACX,MAAM,EAAE,UAAA,KAAK;oBACX,kBAAkB,CAAC,SAAS,CAAC,kBAAkB,CAAC,MAAM,GAAG,KAAK,CAAC,CAAA;oBAC/D,OAAO,KAAK,CAAA;gBACd,CAAC,EACD,SAAS,EAAE,OAAO,CAAC,YAAY,EAC/B,KAAK,EAAE;oBACL,GAAG,KAAA;iBACJ,GACD,CACD,CACJ,CAAC,CAAC,CAAC,IAAI;QAEP,UAAU,CAAC,CAAC,CAAC,CACZ,sDACc,iBAAiB,EAC7B,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,YAAY,CAAC,CAAC,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;aAClD;YAED,8BAAC,aAAa,CAAC,kBAAkB,IAAC,KAAK,EAAE,aAAa,GAAI,CACtD,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,iBAAiB,CAAC,CAAA"}

package/dist/LinearAlignmentsDisplay/index.js

@@ -1,31 +1,25 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = _default;
-
-var _DisplayType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
-
-var _configSchema = _interopRequireDefault(require("./models/configSchema"));
-
-var _model = _interopRequireDefault(require("./models/model"));
-
-var _AlignmentsDisplay = _interopRequireDefault(require("./components/AlignmentsDisplay"));
-
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
 // locals
-function _default(pluginManager) {
-  pluginManager.addDisplayType(function () {
-    var configSchema = (0, _configSchema.default)(pluginManager);
-    return new _DisplayType.default({
-      name: 'LinearAlignmentsDisplay',
-      configSchema: configSchema,
-      stateModel: (0, _model.default)(pluginManager, configSchema),
-      trackType: 'AlignmentsTrack',
-      viewType: 'LinearGenomeView',
-      ReactComponent: _AlignmentsDisplay.default
+var configSchema_1 = __importDefault(require("./models/configSchema"));
+var model_1 = __importDefault(require("./models/model"));
+var AlignmentsDisplay_1 = __importDefault(require("./components/AlignmentsDisplay"));
+function default_1(pluginManager) {
+    pluginManager.addDisplayType(function () {
+        var configSchema = (0, configSchema_1.default)(pluginManager);
+        return new DisplayType_1.default({
+            name: 'LinearAlignmentsDisplay',
+            configSchema: configSchema,
+            stateModel: (0, model_1.default)(pluginManager, configSchema),
+            trackType: 'AlignmentsTrack',
+            viewType: 'LinearGenomeView',
+            ReactComponent: AlignmentsDisplay_1.default,
+        });
     });
-  });
-}
+}
+exports.default = default_1;
+//# sourceMappingURL=index.js.map

package/dist/LinearAlignmentsDisplay/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LinearAlignmentsDisplay/index.ts"],"names":[],"mappings":";;;;;AAAA,gGAAyE;AAEzE,SAAS;AACT,uEAAuD;AACvD,yDAAyC;AACzC,qFAA2D;AAE3D,mBAAyB,aAA4B;IACnD,aAAa,CAAC,cAAc,CAAC;QAC3B,IAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,yBAAyB;YAC/B,YAAY,cAAA;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,iBAAiB;YAC5B,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,6BAAA;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC;AAZD,4BAYC"}

package/dist/LinearAlignmentsDisplay/models/configSchema.js

@@ -1,25 +1,14 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _pluginLinearGenomeView = require("@jbrowse/plugin-linear-genome-view");
-
-var configModelFactory = function configModelFactory(pluginManager) {
-  var PileupDisplayConfigSchema = pluginManager.getDisplayType('LinearPileupDisplay').configSchema;
-  var SNPCoverageDisplayConfigSchema = pluginManager.getDisplayType('LinearSNPCoverageDisplay').configSchema;
-  return (0, _configuration.ConfigurationSchema)('LinearAlignmentsDisplay', {
-    pileupDisplay: PileupDisplayConfigSchema,
-    snpCoverageDisplay: SNPCoverageDisplayConfigSchema
-  }, {
-    baseConfiguration: _pluginLinearGenomeView.baseLinearDisplayConfigSchema,
-    explicitlyTyped: true
-  });
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+var configModelFactory = function (pluginManager) {
+    var PileupDisplayConfigSchema = pluginManager.getDisplayType('LinearPileupDisplay').configSchema;
+    var SNPCoverageDisplayConfigSchema = pluginManager.getDisplayType('LinearSNPCoverageDisplay').configSchema;
+    return (0, configuration_1.ConfigurationSchema)('LinearAlignmentsDisplay', {
+        pileupDisplay: PileupDisplayConfigSchema,
+        snpCoverageDisplay: SNPCoverageDisplayConfigSchema,
+    }, { baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema, explicitlyTyped: true });
 };
-
-var _default = configModelFactory;
-exports.default = _default;
+exports.default = configModelFactory;
+//# sourceMappingURL=configSchema.js.map

package/dist/LinearAlignmentsDisplay/models/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AACjE,gFAAkF;AAGlF,IAAM,kBAAkB,GAAG,UAAC,aAA4B;IACtD,IAAM,yBAAyB,GAAG,aAAa,CAAC,cAAc,CAC5D,qBAAqB,CACtB,CAAC,YAAY,CAAA;IACd,IAAM,8BAA8B,GAAG,aAAa,CAAC,cAAc,CACjE,0BAA0B,CAC3B,CAAC,YAAY,CAAA;IAEd,OAAO,IAAA,mCAAmB,EACxB,yBAAyB,EACzB;QACE,aAAa,EAAE,yBAAyB;QACxC,kBAAkB,EAAE,8BAA8B;KACnD,EACD,EAAE,iBAAiB,EAAE,yDAA6B,EAAE,eAAe,EAAE,IAAI,EAAE,CAC5E,CAAA;AACH,CAAC,CAAA;AAGD,kBAAe,kBAAkB,CAAA"}

package/dist/LinearAlignmentsDisplay/models/model.d.ts

@@ -23,11 +23,11 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: Al
     error: unknown;
 } & {
     readonly RenderingComponent: React.FC<{
-        model: import("mobx-state-tree").ModelInstanceTypeProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }> & {
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -42,11 +42,11 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: Al
         blockState?: Record<string, any> | undefined;
     }>;
     readonly DisplayBlurb: React.FC<{
-        model: import("mobx-state-tree").ModelInstanceTypeProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }> & {
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{