@jbrowse/plugin-alignments 1.7.9 → 2.0.0

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Files changed (294) hide show
  1. package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +192 -207
  2. package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js.map +1 -0
  3. package/dist/AlignmentsFeatureDetail/index.d.ts +28 -3
  4. package/dist/AlignmentsFeatureDetail/index.js +48 -55
  5. package/dist/AlignmentsFeatureDetail/index.js.map +1 -0
  6. package/dist/AlignmentsTrack/index.js +24 -32
  7. package/dist/AlignmentsTrack/index.js.map +1 -0
  8. package/dist/BamAdapter/BamAdapter.js +345 -585
  9. package/dist/BamAdapter/BamAdapter.js.map +1 -0
  10. package/dist/BamAdapter/BamSlightlyLazyFeature.js +143 -174
  11. package/dist/BamAdapter/BamSlightlyLazyFeature.js.map +1 -0
  12. package/dist/BamAdapter/MismatchParser.js +340 -416
  13. package/dist/BamAdapter/MismatchParser.js.map +1 -0
  14. package/dist/BamAdapter/configSchema.js +33 -46
  15. package/dist/BamAdapter/configSchema.js.map +1 -0
  16. package/dist/BamAdapter/index.js +36 -32
  17. package/dist/BamAdapter/index.js.map +1 -0
  18. package/dist/CramAdapter/CramAdapter.js +376 -644
  19. package/dist/CramAdapter/CramAdapter.js.map +1 -0
  20. package/dist/CramAdapter/CramSlightlyLazyFeature.js +374 -439
  21. package/dist/CramAdapter/CramSlightlyLazyFeature.js.map +1 -0
  22. package/dist/CramAdapter/CramTestAdapters.js +169 -227
  23. package/dist/CramAdapter/CramTestAdapters.js.map +1 -0
  24. package/dist/CramAdapter/configSchema.js +28 -38
  25. package/dist/CramAdapter/configSchema.js.map +1 -0
  26. package/dist/CramAdapter/index.js +37 -32
  27. package/dist/CramAdapter/index.js.map +1 -0
  28. package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js +91 -93
  29. package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js.map +1 -0
  30. package/dist/HtsgetBamAdapter/configSchema.js +19 -29
  31. package/dist/HtsgetBamAdapter/configSchema.js.map +1 -0
  32. package/dist/HtsgetBamAdapter/index.js +44 -38
  33. package/dist/HtsgetBamAdapter/index.js.map +1 -0
  34. package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +36 -65
  35. package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -0
  36. package/dist/LinearAlignmentsDisplay/index.js +22 -28
  37. package/dist/LinearAlignmentsDisplay/index.js.map +1 -0
  38. package/dist/LinearAlignmentsDisplay/models/configSchema.js +12 -23
  39. package/dist/LinearAlignmentsDisplay/models/configSchema.js.map +1 -0
  40. package/dist/LinearAlignmentsDisplay/models/model.d.ts +10 -10
  41. package/dist/LinearAlignmentsDisplay/models/model.js +257 -245
  42. package/dist/LinearAlignmentsDisplay/models/model.js.map +1 -0
  43. package/dist/LinearPileupDisplay/components/ColorByModifications.js +98 -116
  44. package/dist/LinearPileupDisplay/components/ColorByModifications.js.map +1 -0
  45. package/dist/LinearPileupDisplay/components/ColorByTag.js +82 -91
  46. package/dist/LinearPileupDisplay/components/ColorByTag.js.map +1 -0
  47. package/dist/LinearPileupDisplay/components/FilterByTag.js +156 -192
  48. package/dist/LinearPileupDisplay/components/FilterByTag.js.map +1 -0
  49. package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js +15 -29
  50. package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js.map +1 -0
  51. package/dist/LinearPileupDisplay/components/SetFeatureHeight.js +79 -93
  52. package/dist/LinearPileupDisplay/components/SetFeatureHeight.js.map +1 -0
  53. package/dist/LinearPileupDisplay/components/SetMaxHeight.js +78 -81
  54. package/dist/LinearPileupDisplay/components/SetMaxHeight.js.map +1 -0
  55. package/dist/LinearPileupDisplay/components/SortByTag.js +80 -88
  56. package/dist/LinearPileupDisplay/components/SortByTag.js.map +1 -0
  57. package/dist/LinearPileupDisplay/configSchema.js +40 -42
  58. package/dist/LinearPileupDisplay/configSchema.js.map +1 -0
  59. package/dist/LinearPileupDisplay/index.js +21 -27
  60. package/dist/LinearPileupDisplay/index.js.map +1 -0
  61. package/dist/LinearPileupDisplay/model.d.ts +33 -20
  62. package/dist/LinearPileupDisplay/model.js +702 -716
  63. package/dist/LinearPileupDisplay/model.js.map +1 -0
  64. package/dist/LinearSNPCoverageDisplay/components/Tooltip.d.ts +1 -1
  65. package/dist/LinearSNPCoverageDisplay/components/Tooltip.js +105 -57
  66. package/dist/LinearSNPCoverageDisplay/components/Tooltip.js.map +1 -0
  67. package/dist/LinearSNPCoverageDisplay/index.js +21 -27
  68. package/dist/LinearSNPCoverageDisplay/index.js.map +1 -0
  69. package/dist/LinearSNPCoverageDisplay/models/configSchema.js +45 -55
  70. package/dist/LinearSNPCoverageDisplay/models/configSchema.js.map +1 -0
  71. package/dist/LinearSNPCoverageDisplay/models/model.d.ts +14 -12
  72. package/dist/LinearSNPCoverageDisplay/models/model.js +257 -230
  73. package/dist/LinearSNPCoverageDisplay/models/model.js.map +1 -0
  74. package/dist/NestedFrequencyTable.js +104 -139
  75. package/dist/NestedFrequencyTable.js.map +1 -0
  76. package/dist/PileupRPC/rpcMethods.js +199 -278
  77. package/dist/PileupRPC/rpcMethods.js.map +1 -0
  78. package/dist/PileupRenderer/PileupLayoutSession.js +56 -76
  79. package/dist/PileupRenderer/PileupLayoutSession.js.map +1 -0
  80. package/dist/PileupRenderer/PileupRenderer.d.ts +56 -11
  81. package/dist/PileupRenderer/PileupRenderer.js +942 -1134
  82. package/dist/PileupRenderer/PileupRenderer.js.map +1 -0
  83. package/dist/PileupRenderer/components/PileupRendering.d.ts +1 -1
  84. package/dist/PileupRenderer/components/PileupRendering.js +173 -253
  85. package/dist/PileupRenderer/components/PileupRendering.js.map +1 -0
  86. package/dist/PileupRenderer/configSchema.js +65 -71
  87. package/dist/PileupRenderer/configSchema.js.map +1 -0
  88. package/dist/PileupRenderer/index.js +17 -22
  89. package/dist/PileupRenderer/index.js.map +1 -0
  90. package/dist/PileupRenderer/sortUtil.js +83 -107
  91. package/dist/PileupRenderer/sortUtil.js.map +1 -0
  92. package/dist/SNPCoverageAdapter/SNPCoverageAdapter.d.ts +2 -0
  93. package/dist/SNPCoverageAdapter/SNPCoverageAdapter.js +436 -586
  94. package/dist/SNPCoverageAdapter/SNPCoverageAdapter.js.map +1 -0
  95. package/dist/SNPCoverageAdapter/configSchema.js +10 -20
  96. package/dist/SNPCoverageAdapter/configSchema.js.map +1 -0
  97. package/dist/SNPCoverageAdapter/index.js +46 -41
  98. package/dist/SNPCoverageAdapter/index.js.map +1 -0
  99. package/dist/SNPCoverageRenderer/SNPCoverageRenderer.d.ts +1 -1
  100. package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js +265 -290
  101. package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -0
  102. package/dist/SNPCoverageRenderer/configSchema.js +30 -39
  103. package/dist/SNPCoverageRenderer/configSchema.js.map +1 -0
  104. package/dist/SNPCoverageRenderer/index.js +19 -30
  105. package/dist/SNPCoverageRenderer/index.js.map +1 -0
  106. package/dist/index.js +135 -152
  107. package/dist/index.js.map +1 -0
  108. package/dist/shared.js +84 -92
  109. package/dist/shared.js.map +1 -0
  110. package/dist/util.js +130 -121
  111. package/dist/util.js.map +1 -0
  112. package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.d.ts +6 -0
  113. package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +145 -0
  114. package/esm/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js.map +1 -0
  115. package/esm/AlignmentsFeatureDetail/index.d.ts +38 -0
  116. package/esm/AlignmentsFeatureDetail/index.js +23 -0
  117. package/esm/AlignmentsFeatureDetail/index.js.map +1 -0
  118. package/esm/AlignmentsTrack/index.d.ts +2 -0
  119. package/esm/AlignmentsTrack/index.js +23 -0
  120. package/esm/AlignmentsTrack/index.js.map +1 -0
  121. package/esm/BamAdapter/BamAdapter.d.ts +40 -0
  122. package/esm/BamAdapter/BamAdapter.js +173 -0
  123. package/esm/BamAdapter/BamAdapter.js.map +1 -0
  124. package/esm/BamAdapter/BamSlightlyLazyFeature.d.ts +33 -0
  125. package/esm/BamAdapter/BamSlightlyLazyFeature.js +107 -0
  126. package/esm/BamAdapter/BamSlightlyLazyFeature.js.map +1 -0
  127. package/esm/BamAdapter/MismatchParser.d.ts +25 -0
  128. package/esm/BamAdapter/MismatchParser.js +294 -0
  129. package/esm/BamAdapter/MismatchParser.js.map +1 -0
  130. package/esm/BamAdapter/configSchema.d.ts +2 -0
  131. package/esm/BamAdapter/configSchema.js +31 -0
  132. package/esm/BamAdapter/configSchema.js.map +1 -0
  133. package/esm/BamAdapter/index.d.ts +3 -0
  134. package/esm/BamAdapter/index.js +10 -0
  135. package/esm/BamAdapter/index.js.map +1 -0
  136. package/esm/CramAdapter/CramAdapter.d.ts +53 -0
  137. package/esm/CramAdapter/CramAdapter.js +228 -0
  138. package/esm/CramAdapter/CramAdapter.js.map +1 -0
  139. package/esm/CramAdapter/CramSlightlyLazyFeature.d.ts +49 -0
  140. package/esm/CramAdapter/CramSlightlyLazyFeature.js +349 -0
  141. package/esm/CramAdapter/CramSlightlyLazyFeature.js.map +1 -0
  142. package/esm/CramAdapter/CramTestAdapters.d.ts +29 -0
  143. package/esm/CramAdapter/CramTestAdapters.js +70 -0
  144. package/esm/CramAdapter/CramTestAdapters.js.map +1 -0
  145. package/esm/CramAdapter/configSchema.d.ts +3 -0
  146. package/esm/CramAdapter/configSchema.js +26 -0
  147. package/esm/CramAdapter/configSchema.js.map +1 -0
  148. package/esm/CramAdapter/index.d.ts +3 -0
  149. package/esm/CramAdapter/index.js +11 -0
  150. package/esm/CramAdapter/index.js.map +1 -0
  151. package/esm/HtsgetBamAdapter/HtsgetBamAdapter.d.ts +9 -0
  152. package/esm/HtsgetBamAdapter/HtsgetBamAdapter.js +27 -0
  153. package/esm/HtsgetBamAdapter/HtsgetBamAdapter.js.map +1 -0
  154. package/esm/HtsgetBamAdapter/configSchema.d.ts +2 -0
  155. package/esm/HtsgetBamAdapter/configSchema.js +17 -0
  156. package/esm/HtsgetBamAdapter/configSchema.js.map +1 -0
  157. package/esm/HtsgetBamAdapter/index.d.ts +3 -0
  158. package/esm/HtsgetBamAdapter/index.js +16 -0
  159. package/esm/HtsgetBamAdapter/index.js.map +1 -0
  160. package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.d.ts +7 -0
  161. package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +34 -0
  162. package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -0
  163. package/esm/LinearAlignmentsDisplay/index.d.ts +2 -0
  164. package/esm/LinearAlignmentsDisplay/index.js +19 -0
  165. package/esm/LinearAlignmentsDisplay/index.js.map +1 -0
  166. package/esm/LinearAlignmentsDisplay/models/configSchema.d.ts +4 -0
  167. package/esm/LinearAlignmentsDisplay/models/configSchema.js +12 -0
  168. package/esm/LinearAlignmentsDisplay/models/configSchema.js.map +1 -0
  169. package/esm/LinearAlignmentsDisplay/models/model.d.ts +105 -0
  170. package/esm/LinearAlignmentsDisplay/models/model.js +181 -0
  171. package/esm/LinearAlignmentsDisplay/models/model.js.map +1 -0
  172. package/esm/LinearPileupDisplay/components/ColorByModifications.d.ts +14 -0
  173. package/esm/LinearPileupDisplay/components/ColorByModifications.js +71 -0
  174. package/esm/LinearPileupDisplay/components/ColorByModifications.js.map +1 -0
  175. package/esm/LinearPileupDisplay/components/ColorByTag.d.ts +9 -0
  176. package/esm/LinearPileupDisplay/components/ColorByTag.js +45 -0
  177. package/esm/LinearPileupDisplay/components/ColorByTag.js.map +1 -0
  178. package/esm/LinearPileupDisplay/components/FilterByTag.d.ts +18 -0
  179. package/esm/LinearPileupDisplay/components/FilterByTag.js +123 -0
  180. package/esm/LinearPileupDisplay/components/FilterByTag.js.map +1 -0
  181. package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts +13 -0
  182. package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js +13 -0
  183. package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js.map +1 -0
  184. package/esm/LinearPileupDisplay/components/SetFeatureHeight.d.ts +16 -0
  185. package/esm/LinearPileupDisplay/components/SetFeatureHeight.js +41 -0
  186. package/esm/LinearPileupDisplay/components/SetFeatureHeight.js.map +1 -0
  187. package/esm/LinearPileupDisplay/components/SetMaxHeight.d.ts +10 -0
  188. package/esm/LinearPileupDisplay/components/SetMaxHeight.js +43 -0
  189. package/esm/LinearPileupDisplay/components/SetMaxHeight.js.map +1 -0
  190. package/esm/LinearPileupDisplay/components/SortByTag.d.ts +9 -0
  191. package/esm/LinearPileupDisplay/components/SortByTag.js +43 -0
  192. package/esm/LinearPileupDisplay/components/SortByTag.js.map +1 -0
  193. package/esm/LinearPileupDisplay/configSchema.d.ts +6 -0
  194. package/esm/LinearPileupDisplay/configSchema.js +41 -0
  195. package/esm/LinearPileupDisplay/configSchema.js.map +1 -0
  196. package/esm/LinearPileupDisplay/index.d.ts +2 -0
  197. package/esm/LinearPileupDisplay/index.js +18 -0
  198. package/esm/LinearPileupDisplay/index.js.map +1 -0
  199. package/esm/LinearPileupDisplay/model.d.ts +332 -0
  200. package/esm/LinearPileupDisplay/model.js +576 -0
  201. package/esm/LinearPileupDisplay/model.js.map +1 -0
  202. package/esm/LinearSNPCoverageDisplay/components/Tooltip.d.ts +10 -0
  203. package/esm/LinearSNPCoverageDisplay/components/Tooltip.js +57 -0
  204. package/esm/LinearSNPCoverageDisplay/components/Tooltip.js.map +1 -0
  205. package/esm/LinearSNPCoverageDisplay/index.d.ts +2 -0
  206. package/esm/LinearSNPCoverageDisplay/index.js +18 -0
  207. package/esm/LinearSNPCoverageDisplay/index.js.map +1 -0
  208. package/esm/LinearSNPCoverageDisplay/models/configSchema.d.ts +2 -0
  209. package/esm/LinearSNPCoverageDisplay/models/configSchema.js +44 -0
  210. package/esm/LinearSNPCoverageDisplay/models/configSchema.js.map +1 -0
  211. package/esm/LinearSNPCoverageDisplay/models/model.d.ts +348 -0
  212. package/esm/LinearSNPCoverageDisplay/models/model.js +185 -0
  213. package/esm/LinearSNPCoverageDisplay/models/model.js.map +1 -0
  214. package/esm/NestedFrequencyTable.d.ts +14 -0
  215. package/esm/NestedFrequencyTable.js +101 -0
  216. package/esm/NestedFrequencyTable.js.map +1 -0
  217. package/esm/PileupRPC/rpcMethods.d.ts +34 -0
  218. package/esm/PileupRPC/rpcMethods.js +70 -0
  219. package/esm/PileupRPC/rpcMethods.js.map +1 -0
  220. package/esm/PileupRenderer/PileupLayoutSession.d.ts +32 -0
  221. package/esm/PileupRenderer/PileupLayoutSession.js +32 -0
  222. package/esm/PileupRenderer/PileupLayoutSession.js.map +1 -0
  223. package/esm/PileupRenderer/PileupRenderer.d.ts +182 -0
  224. package/esm/PileupRenderer/PileupRenderer.js +830 -0
  225. package/esm/PileupRenderer/PileupRenderer.js.map +1 -0
  226. package/esm/PileupRenderer/components/PileupRendering.d.ts +23 -0
  227. package/esm/PileupRenderer/components/PileupRendering.js +138 -0
  228. package/esm/PileupRenderer/components/PileupRendering.js.map +1 -0
  229. package/esm/PileupRenderer/configSchema.d.ts +2 -0
  230. package/esm/PileupRenderer/configSchema.js +64 -0
  231. package/esm/PileupRenderer/configSchema.js.map +1 -0
  232. package/esm/PileupRenderer/index.d.ts +2 -0
  233. package/esm/PileupRenderer/index.js +12 -0
  234. package/esm/PileupRenderer/index.js.map +1 -0
  235. package/esm/PileupRenderer/sortUtil.d.ts +8 -0
  236. package/esm/PileupRenderer/sortUtil.js +80 -0
  237. package/esm/PileupRenderer/sortUtil.js.map +1 -0
  238. package/esm/SNPCoverageAdapter/SNPCoverageAdapter.d.ts +67 -0
  239. package/esm/SNPCoverageAdapter/SNPCoverageAdapter.js +259 -0
  240. package/esm/SNPCoverageAdapter/SNPCoverageAdapter.js.map +1 -0
  241. package/esm/SNPCoverageAdapter/configSchema.d.ts +3 -0
  242. package/esm/SNPCoverageAdapter/configSchema.js +6 -0
  243. package/esm/SNPCoverageAdapter/configSchema.js.map +1 -0
  244. package/esm/SNPCoverageAdapter/index.d.ts +3 -0
  245. package/esm/SNPCoverageAdapter/index.js +18 -0
  246. package/esm/SNPCoverageAdapter/index.js.map +1 -0
  247. package/esm/SNPCoverageRenderer/SNPCoverageRenderer.d.ts +20 -0
  248. package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js +185 -0
  249. package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -0
  250. package/esm/SNPCoverageRenderer/configSchema.d.ts +2 -0
  251. package/esm/SNPCoverageRenderer/configSchema.js +29 -0
  252. package/esm/SNPCoverageRenderer/configSchema.js.map +1 -0
  253. package/esm/SNPCoverageRenderer/index.d.ts +3 -0
  254. package/esm/SNPCoverageRenderer/index.js +14 -0
  255. package/esm/SNPCoverageRenderer/index.js.map +1 -0
  256. package/esm/index.d.ts +10 -0
  257. package/esm/index.js +91 -0
  258. package/esm/index.js.map +1 -0
  259. package/esm/shared.d.ts +25 -0
  260. package/esm/shared.js +28 -0
  261. package/esm/shared.js.map +1 -0
  262. package/esm/util.d.ts +19 -0
  263. package/esm/util.js +83 -0
  264. package/esm/util.js.map +1 -0
  265. package/package.json +19 -11
  266. package/src/AlignmentsFeatureDetail/AlignmentsFeatureDetail.tsx +16 -6
  267. package/src/AlignmentsFeatureDetail/__snapshots__/index.test.js.snap +321 -397
  268. package/src/AlignmentsFeatureDetail/index.ts +7 -17
  269. package/src/BamAdapter/MismatchParser.ts +1 -0
  270. package/src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx +3 -3
  271. package/src/LinearPileupDisplay/components/ColorByModifications.tsx +7 -7
  272. package/src/LinearPileupDisplay/components/ColorByTag.tsx +5 -5
  273. package/src/LinearPileupDisplay/components/FilterByTag.tsx +5 -5
  274. package/src/LinearPileupDisplay/components/LinearPileupDisplayBlurb.tsx +1 -1
  275. package/src/LinearPileupDisplay/components/SetFeatureHeight.tsx +9 -9
  276. package/src/LinearPileupDisplay/components/SetMaxHeight.tsx +5 -5
  277. package/src/LinearPileupDisplay/components/SortByTag.tsx +5 -5
  278. package/src/LinearPileupDisplay/model.ts +90 -32
  279. package/src/LinearSNPCoverageDisplay/components/Tooltip.tsx +44 -30
  280. package/src/LinearSNPCoverageDisplay/models/model.ts +25 -25
  281. package/src/PileupRenderer/PileupRenderer.tsx +399 -198
  282. package/src/PileupRenderer/components/PileupRendering.tsx +11 -11
  283. package/src/SNPCoverageAdapter/SNPCoverageAdapter.ts +5 -0
  284. package/src/SNPCoverageRenderer/SNPCoverageRenderer.ts +7 -5
  285. package/dist/AlignmentsFeatureDetail/index.test.js +0 -60
  286. package/dist/BamAdapter/BamAdapter.test.js +0 -177
  287. package/dist/BamAdapter/MismatchParser.test.js +0 -251
  288. package/dist/CramAdapter/CramAdapter.test.js +0 -138
  289. package/dist/LinearAlignmentsDisplay/models/configSchema.test.js +0 -83
  290. package/dist/LinearPileupDisplay/configSchema.test.js +0 -92
  291. package/dist/LinearSNPCoverageDisplay/models/configSchema.test.js +0 -62
  292. package/dist/PileupRenderer/components/PileupRendering.test.js +0 -36
  293. package/dist/declare.d.js +0 -1
  294. package/dist/index.test.js +0 -26
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@@ -1,22 +1,12 @@
1
1
  "use strict";
2
-
3
- Object.defineProperty(exports, "__esModule", {
4
- value: true
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- });
6
- exports.default = void 0;
7
-
8
- var _configuration = require("@jbrowse/core/configuration");
9
-
10
- var _mobxStateTree = require("mobx-state-tree");
11
-
12
- var _default = function _default(pluginManager) {
13
- return _mobxStateTree.types.late(function () {
14
- return (0, _configuration.ConfigurationSchema)('SNPCoverageAdapter', {
15
- subadapter: pluginManager.pluggableConfigSchemaType('adapter')
16
- }, {
17
- explicitlyTyped: true
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ var configuration_1 = require("@jbrowse/core/configuration");
4
+ var mobx_state_tree_1 = require("mobx-state-tree");
5
+ exports.default = (function (pluginManager) {
6
+ return mobx_state_tree_1.types.late(function () {
7
+ return (0, configuration_1.ConfigurationSchema)('SNPCoverageAdapter', {
8
+ subadapter: pluginManager.pluggableConfigSchemaType('adapter'),
9
+ }, { explicitlyTyped: true });
18
10
  });
19
- });
20
- };
21
-
22
- exports.default = _default;
11
+ });
12
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/SNPCoverageAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,mDAAuC;AAEvC,mBAAe,UAAC,aAA4B;IAC1C,OAAA,uBAAK,CAAC,IAAI,CAAC;QACT,OAAA,IAAA,mCAAmB,EACjB,oBAAoB,EACpB;YACE,UAAU,EAAE,aAAa,CAAC,yBAAyB,CAAC,SAAS,CAAC;SAC/D,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B;IAND,CAMC,CACF;AARD,CAQC,EAAA"}
@@ -1,45 +1,50 @@
1
1
  "use strict";
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-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
5
- Object.defineProperty(exports, "__esModule", {
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- value: true
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
7
17
  });
8
- exports.default = void 0;
9
-
10
- var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
11
-
12
- var _AdapterType = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
13
-
14
- var _configSchema = _interopRequireDefault(require("./configSchema"));
15
-
16
- var _SNPCoverageAdapter = require("./SNPCoverageAdapter");
17
-
18
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
19
-
20
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
21
-
22
- var _default = function _default(pluginManager) {
23
- pluginManager.addAdapterType(function () {
24
- return new _AdapterType.default({
25
- name: 'SNPCoverageAdapter',
26
- adapterMetadata: {
27
- category: null,
28
- displayName: null,
29
- hiddenFromGUI: true,
30
- description: null
31
- },
32
- getAdapterClass: function getAdapterClass() {
33
- return Promise.resolve().then(function () {
34
- return _interopRequireWildcard(require('./SNPCoverageAdapter'));
35
- }).then(function (r) {
36
- return r.default;
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
25
+ var __importDefault = (this && this.__importDefault) || function (mod) {
26
+ return (mod && mod.__esModule) ? mod : { "default": mod };
27
+ };
28
+ Object.defineProperty(exports, "__esModule", { value: true });
29
+ var AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
30
+ var configSchema_1 = __importDefault(require("./configSchema"));
31
+ var SNPCoverageAdapter_1 = require("./SNPCoverageAdapter");
32
+ exports.default = (function (pluginManager) {
33
+ pluginManager.addAdapterType(function () {
34
+ return new AdapterType_1.default({
35
+ name: 'SNPCoverageAdapter',
36
+ adapterMetadata: {
37
+ category: null,
38
+ displayName: null,
39
+ hiddenFromGUI: true,
40
+ description: null,
41
+ },
42
+ getAdapterClass: function () {
43
+ return Promise.resolve().then(function () { return __importStar(require('./SNPCoverageAdapter')); }).then(function (r) { return r.default; });
44
+ },
45
+ configSchema: (0, configSchema_1.default)(pluginManager),
46
+ adapterCapabilities: SNPCoverageAdapter_1.capabilities,
37
47
  });
38
- },
39
- configSchema: (0, _configSchema.default)(pluginManager),
40
- adapterCapabilities: _SNPCoverageAdapter.capabilities
41
48
  });
42
- });
43
- };
44
-
45
- exports.default = _default;
49
+ });
50
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/SNPCoverageAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,gGAAyE;AACzE,gEAAgD;AAChD,2DAAmD;AAEnD,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,cAAc,CAC1B;QACE,OAAA,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,oBAAoB;YAC1B,eAAe,EAAE;gBACf,QAAQ,EAAE,IAAI;gBACd,WAAW,EAAE,IAAI;gBACjB,aAAa,EAAE,IAAI;gBACnB,WAAW,EAAE,IAAI;aAClB;YACD,eAAe,EAAE;gBACf,OAAA,iEAAO,sBAAsB,OAAE,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,OAAO,EAAT,CAAS,CAAC;YAAnD,CAAmD;YACrD,YAAY,EAAE,IAAA,sBAAmB,EAAC,aAAa,CAAC;YAChD,mBAAmB,EAAE,iCAAY;SAClC,CAAC;IAZF,CAYE,CACL,CAAA;AACH,CAAC,EAAA"}
@@ -16,5 +16,5 @@ export interface RenderArgsDeserializedWithFeatures extends RenderArgsDeserializ
16
16
  modificationTagMap?: Record<string, string>;
17
17
  }
18
18
  export default class SNPCoverageRenderer extends WiggleBaseRenderer {
19
- draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): void;
19
+ draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<void>;
20
20
  }