@jbrowse/plugin-alignments 1.7.9 → 2.0.0

package/dist/LinearAlignmentsDisplay/models/model.js

@@ -1,250 +1,262 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _react = _interopRequireDefault(require("react"));
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _models = require("@jbrowse/core/pluggableElementTypes/models");
-
-var _mobx = require("mobx");
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _util = require("@jbrowse/core/util");
-
-var _fastDeepEqual = _interopRequireDefault(require("fast-deep-equal"));
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-var minDisplayHeight = 20;
-
-var stateModelFactory = function stateModelFactory(pluginManager, configSchema) {
-  return _mobxStateTree.types.compose('LinearAlignmentsDisplay', _models.BaseDisplay, _mobxStateTree.types.model({
-    PileupDisplay: _mobxStateTree.types.maybe(pluginManager.getDisplayType('LinearPileupDisplay').stateModel),
-    SNPCoverageDisplay: _mobxStateTree.types.maybe(pluginManager.getDisplayType('LinearSNPCoverageDisplay').stateModel),
-    snpCovHeight: 45,
-    type: _mobxStateTree.types.literal('LinearAlignmentsDisplay'),
-    configuration: (0, _configuration.ConfigurationReference)(configSchema),
-    height: 250,
-    showCoverage: true,
-    showPileup: true,
-    userFeatureScreenDensity: _mobxStateTree.types.maybe(_mobxStateTree.types.number)
-  })).volatile(function () {
-    return {
-      scrollTop: 0
-    };
-  }).actions(function (self) {
-    return {
-      toggleCoverage: function toggleCoverage() {
-        self.showCoverage = !self.showCoverage;
-      },
-      togglePileup: function togglePileup() {
-        self.showPileup = !self.showPileup;
-      },
-      setScrollTop: function setScrollTop(scrollTop) {
-        self.scrollTop = scrollTop;
-      },
-      setSNPCoverageHeight: function setSNPCoverageHeight(n) {
-        self.snpCovHeight = n;
-      }
-    };
-  }).views(function (self) {
-    var superTrackMenuItems = self.trackMenuItems;
-    return {
-      get pileupDisplayConfig() {
-        var conf = (0, _configuration.getConf)(self, 'pileupDisplay');
-        var track = (0, _util.getContainingTrack)(self);
-        return _objectSpread(_objectSpread({}, conf), {}, {
-          type: 'LinearPileupDisplay',
-          name: "".concat((0, _configuration.getConf)(track, 'name'), " pileup"),
-          displayId: "".concat(self.configuration.displayId, "_pileup_xyz") // xyz to avoid someone accidentally naming the displayId similar to this
-
-        });
-      },
-
-      getFeatureByID: function getFeatureByID(blockKey, id) {
-        return self.PileupDisplay.getFeatureByID(blockKey, id);
-      },
-      searchFeatureByID: function searchFeatureByID(id) {
-        return self.PileupDisplay.searchFeatureByID(id);
-      },
-
-      get features() {
-        return self.PileupDisplay.features;
-      },
-
-      get DisplayBlurb() {
-        var _self$PileupDisplay;
-
-        return (_self$PileupDisplay = self.PileupDisplay) === null || _self$PileupDisplay === void 0 ? void 0 : _self$PileupDisplay.DisplayBlurb;
-      },
-
-      get sortedBy() {
-        return self.PileupDisplay.sortedBy;
-      },
-
-      get sortedByPosition() {
-        return self.PileupDisplay.sortedByPosition;
-      },
-
-      get sortedByRefName() {
-        return self.PileupDisplay.sortedByRefName;
-      },
-
-      get snpCoverageDisplayConfig() {
-        var conf = (0, _configuration.getConf)(self, 'snpCoverageDisplay');
-        var track = (0, _util.getContainingTrack)(self);
-        return _objectSpread(_objectSpread({}, conf), {}, {
-          type: 'LinearSNPCoverageDisplay',
-          name: "".concat((0, _configuration.getConf)(track, 'name'), " snp coverage"),
-          displayId: "".concat(self.configuration.displayId, "_snpcoverage_xyz") // xyz to avoid someone accidentally naming the displayId similar to this
-
-        });
-      },
-
-      trackMenuItems: function trackMenuItems() {
-        return [].concat((0, _toConsumableArray2.default)(superTrackMenuItems()), [{
-          type: 'subMenu',
-          label: 'Pileup settings',
-          subMenu: self.PileupDisplay.trackMenuItems()
-        }, {
-          type: 'subMenu',
-          label: 'SNPCoverage settings',
-          subMenu: self.SNPCoverageDisplay.trackMenuItems()
-        }]);
-      }
-    };
-  }).actions(function (self) {
-    return {
-      setSNPCoverageDisplay: function setSNPCoverageDisplay(displayConfig) {
-        self.SNPCoverageDisplay = {
-          type: 'LinearSNPCoverageDisplay',
-          configuration: displayConfig,
-          height: self.snpCovHeight
-        };
-      },
-      setUserFeatureScreenDensity: function setUserFeatureScreenDensity(limit) {
-        self.PileupDisplay.setUserFeatureScreenDensity(limit);
-        self.SNPCoverageDisplay.setUserFeatureScreenDensity(limit);
-      },
-      setPileupDisplay: function setPileupDisplay(displayConfig) {
-        self.PileupDisplay = {
-          type: 'LinearPileupDisplay',
-          configuration: displayConfig
-        };
-      },
-      setHeight: function setHeight(displayHeight) {
-        if (displayHeight > minDisplayHeight) {
-          self.height = displayHeight;
-        } else {
-          self.height = minDisplayHeight;
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
         }
-
-        return self.height;
-      },
-      resizeHeight: function resizeHeight(distance) {
-        var oldHeight = self.height;
-        var newHeight = this.setHeight(self.height + distance);
-        return newHeight - oldHeight;
-      }
+        return t;
     };
-  }).actions(function (self) {
-    return {
-      afterAttach: function afterAttach() {
-        (0, _mobxStateTree.addDisposer)(self, (0, _mobx.autorun)(function () {
-          if (!self.SNPCoverageDisplay) {
-            self.setSNPCoverageDisplay(self.snpCoverageDisplayConfig);
-          } else if (!(0, _fastDeepEqual.default)(self.snpCoverageDisplayConfig, (0, _mobxStateTree.getSnapshot)(self.SNPCoverageDisplay.configuration))) {
-            self.SNPCoverageDisplay.setHeight(self.snpCovHeight);
-            self.SNPCoverageDisplay.setConfig(self.snpCoverageDisplayConfig);
-          }
-
-          if (!self.PileupDisplay) {
-            self.setPileupDisplay(self.pileupDisplayConfig);
-          } else if (!(0, _fastDeepEqual.default)(self.pileupDisplayConfig, (0, _mobxStateTree.getSnapshot)(self.PileupDisplay.configuration))) {
-            self.PileupDisplay.setConfig(self.pileupDisplayConfig);
-          } // propagate the filterBy setting from pileupdisplay to snpcoverage
-          // note: the snpcoverage display is not able to control filterBy
-          // itself
-
-
-          if (self.PileupDisplay.filterBy && !(0, _fastDeepEqual.default)((0, _mobxStateTree.getSnapshot)(self.PileupDisplay.filterBy), (0, _mobxStateTree.getSnapshot)(self.SNPCoverageDisplay.filterBy))) {
-            self.SNPCoverageDisplay.setFilterBy((0, _mobxStateTree.getSnapshot)(self.PileupDisplay.filterBy));
-          }
-
-          if (self.PileupDisplay.colorBy && !(0, _fastDeepEqual.default)((0, _mobxStateTree.getSnapshot)(self.PileupDisplay.colorBy), self.SNPCoverageDisplay.colorBy ? (0, _mobxStateTree.getSnapshot)(self.SNPCoverageDisplay.colorBy) : {})) {
-            self.SNPCoverageDisplay.setColorBy((0, _mobxStateTree.getSnapshot)(self.PileupDisplay.colorBy));
-          }
-        }));
-        (0, _mobxStateTree.addDisposer)(self, (0, _mobx.autorun)(function () {
-          self.setSNPCoverageHeight(self.SNPCoverageDisplay.height);
-        }));
-      },
-      renderSvg: function renderSvg(opts) {
-        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-          var pileupHeight;
-          return _regenerator.default.wrap(function _callee$(_context) {
-            while (1) {
-              switch (_context.prev = _context.next) {
-                case 0:
-                  pileupHeight = self.height - self.SNPCoverageDisplay.height;
-                  _context.next = 3;
-                  return (0, _mobx.when)(function () {
-                    return self.PileupDisplay.ready;
-                  });
-
-                case 3:
-                  _context.t0 = _react.default;
-                  _context.t1 = _react.default.Fragment;
-                  _context.t2 = _react.default;
-                  _context.next = 8;
-                  return self.SNPCoverageDisplay.renderSvg(opts);
-
-                case 8:
-                  _context.t3 = _context.sent;
-                  _context.t4 = _context.t2.createElement.call(_context.t2, "g", null, _context.t3);
-                  _context.t5 = _react.default;
-                  _context.t6 = {
-                    transform: "translate(0 ".concat(self.SNPCoverageDisplay.height, ")")
-                  };
-                  _context.next = 14;
-                  return self.PileupDisplay.renderSvg(_objectSpread(_objectSpread({}, opts), {}, {
-                    overrideHeight: pileupHeight
-                  }));
-
-                case 14:
-                  _context.t7 = _context.sent;
-                  _context.t8 = _context.t5.createElement.call(_context.t5, "g", _context.t6, _context.t7);
-                  return _context.abrupt("return", _context.t0.createElement.call(_context.t0, _context.t1, null, _context.t4, _context.t8));
-
-                case 17:
-                case "end":
-                  return _context.stop();
-              }
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
             }
-          }, _callee);
-        }))();
-      }
-    };
-  });
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importDefault(require("react"));
+var configuration_1 = require("@jbrowse/core/configuration");
+var models_1 = require("@jbrowse/core/pluggableElementTypes/models");
+var mobx_1 = require("mobx");
+var mobx_state_tree_1 = require("mobx-state-tree");
+var util_1 = require("@jbrowse/core/util");
+var fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
+var minDisplayHeight = 20;
+var stateModelFactory = function (pluginManager, configSchema) {
+    return mobx_state_tree_1.types
+        .compose('LinearAlignmentsDisplay', models_1.BaseDisplay, mobx_state_tree_1.types.model({
+        PileupDisplay: mobx_state_tree_1.types.maybe(pluginManager.getDisplayType('LinearPileupDisplay').stateModel),
+        SNPCoverageDisplay: mobx_state_tree_1.types.maybe(pluginManager.getDisplayType('LinearSNPCoverageDisplay').stateModel),
+        snpCovHeight: 45,
+        type: mobx_state_tree_1.types.literal('LinearAlignmentsDisplay'),
+        configuration: (0, configuration_1.ConfigurationReference)(configSchema),
+        height: 250,
+        showCoverage: true,
+        showPileup: true,
+        userFeatureScreenDensity: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
+    }))
+        .volatile(function () { return ({
+        scrollTop: 0,
+    }); })
+        .actions(function (self) { return ({
+        toggleCoverage: function () {
+            self.showCoverage = !self.showCoverage;
+        },
+        togglePileup: function () {
+            self.showPileup = !self.showPileup;
+        },
+        setScrollTop: function (scrollTop) {
+            self.scrollTop = scrollTop;
+        },
+        setSNPCoverageHeight: function (n) {
+            self.snpCovHeight = n;
+        },
+    }); })
+        .views(function (self) {
+        var superTrackMenuItems = self.trackMenuItems;
+        return {
+            get pileupDisplayConfig() {
+                var conf = (0, configuration_1.getConf)(self, 'pileupDisplay');
+                var track = (0, util_1.getContainingTrack)(self);
+                return __assign(__assign({}, conf), { type: 'LinearPileupDisplay', name: "".concat((0, configuration_1.getConf)(track, 'name'), " pileup"), displayId: "".concat(self.configuration.displayId, "_pileup_xyz") });
+            },
+            getFeatureByID: function (blockKey, id) {
+                return self.PileupDisplay.getFeatureByID(blockKey, id);
+            },
+            searchFeatureByID: function (id) {
+                return self.PileupDisplay.searchFeatureByID(id);
+            },
+            get features() {
+                return self.PileupDisplay.features;
+            },
+            get DisplayBlurb() {
+                var _a;
+                return (_a = self.PileupDisplay) === null || _a === void 0 ? void 0 : _a.DisplayBlurb;
+            },
+            get sortedBy() {
+                return self.PileupDisplay.sortedBy;
+            },
+            get sortedByPosition() {
+                return self.PileupDisplay.sortedByPosition;
+            },
+            get sortedByRefName() {
+                return self.PileupDisplay.sortedByRefName;
+            },
+            get snpCoverageDisplayConfig() {
+                var conf = (0, configuration_1.getConf)(self, 'snpCoverageDisplay');
+                var track = (0, util_1.getContainingTrack)(self);
+                return __assign(__assign({}, conf), { type: 'LinearSNPCoverageDisplay', name: "".concat((0, configuration_1.getConf)(track, 'name'), " snp coverage"), displayId: "".concat(self.configuration.displayId, "_snpcoverage_xyz") });
+            },
+            trackMenuItems: function () {
+                return __spreadArray(__spreadArray([], __read(superTrackMenuItems()), false), [
+                    {
+                        type: 'subMenu',
+                        label: 'Pileup settings',
+                        subMenu: self.PileupDisplay.trackMenuItems(),
+                    },
+                    {
+                        type: 'subMenu',
+                        label: 'SNPCoverage settings',
+                        subMenu: self.SNPCoverageDisplay.trackMenuItems(),
+                    },
+                ], false);
+            },
+        };
+    })
+        .actions(function (self) { return ({
+        setSNPCoverageDisplay: function (displayConfig) {
+            self.SNPCoverageDisplay = {
+                type: 'LinearSNPCoverageDisplay',
+                configuration: displayConfig,
+                height: self.snpCovHeight,
+            };
+        },
+        setUserFeatureScreenDensity: function (limit) {
+            self.PileupDisplay.setUserFeatureScreenDensity(limit);
+            self.SNPCoverageDisplay.setUserFeatureScreenDensity(limit);
+        },
+        setPileupDisplay: function (displayConfig) {
+            self.PileupDisplay = {
+                type: 'LinearPileupDisplay',
+                configuration: displayConfig,
+            };
+        },
+        setHeight: function (displayHeight) {
+            if (displayHeight > minDisplayHeight) {
+                self.height = displayHeight;
+            }
+            else {
+                self.height = minDisplayHeight;
+            }
+            return self.height;
+        },
+        resizeHeight: function (distance) {
+            var oldHeight = self.height;
+            var newHeight = this.setHeight(self.height + distance);
+            return newHeight - oldHeight;
+        },
+    }); })
+        .actions(function (self) { return ({
+        afterAttach: function () {
+            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(function () {
+                if (!self.SNPCoverageDisplay) {
+                    self.setSNPCoverageDisplay(self.snpCoverageDisplayConfig);
+                }
+                else if (!(0, fast_deep_equal_1.default)(self.snpCoverageDisplayConfig, (0, mobx_state_tree_1.getSnapshot)(self.SNPCoverageDisplay.configuration))) {
+                    self.SNPCoverageDisplay.setHeight(self.snpCovHeight);
+                    self.SNPCoverageDisplay.setConfig(self.snpCoverageDisplayConfig);
+                }
+                if (!self.PileupDisplay) {
+                    self.setPileupDisplay(self.pileupDisplayConfig);
+                }
+                else if (!(0, fast_deep_equal_1.default)(self.pileupDisplayConfig, (0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.configuration))) {
+                    self.PileupDisplay.setConfig(self.pileupDisplayConfig);
+                }
+                // propagate the filterBy setting from pileupdisplay to snpcoverage
+                // note: the snpcoverage display is not able to control filterBy
+                // itself
+                if (self.PileupDisplay.filterBy &&
+                    !(0, fast_deep_equal_1.default)((0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.filterBy), (0, mobx_state_tree_1.getSnapshot)(self.SNPCoverageDisplay.filterBy))) {
+                    self.SNPCoverageDisplay.setFilterBy((0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.filterBy));
+                }
+                if (self.PileupDisplay.colorBy &&
+                    !(0, fast_deep_equal_1.default)((0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.colorBy), self.SNPCoverageDisplay.colorBy
+                        ? (0, mobx_state_tree_1.getSnapshot)(self.SNPCoverageDisplay.colorBy)
+                        : {})) {
+                    self.SNPCoverageDisplay.setColorBy((0, mobx_state_tree_1.getSnapshot)(self.PileupDisplay.colorBy));
+                }
+            }));
+            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(function () {
+                self.setSNPCoverageHeight(self.SNPCoverageDisplay.height);
+            }));
+        },
+        renderSvg: function (opts) {
+            return __awaiter(this, void 0, void 0, function () {
+                var pileupHeight, _a, _b, _c, _d, _e, _f, _g, _h, _j;
+                return __generator(this, function (_k) {
+                    switch (_k.label) {
+                        case 0:
+                            pileupHeight = self.height - self.SNPCoverageDisplay.height;
+                            return [4 /*yield*/, (0, mobx_1.when)(function () { return self.PileupDisplay.ready; })];
+                        case 1:
+                            _k.sent();
+                            _b = (_a = react_1.default).createElement;
+                            _c = [react_1.default.Fragment, null];
+                            _e = (_d = react_1.default).createElement;
+                            _f = ["g", null];
+                            return [4 /*yield*/, self.SNPCoverageDisplay.renderSvg(opts)];
+                        case 2:
+                            _c = _c.concat([_e.apply(_d, _f.concat([_k.sent()]))]);
+                            _h = (_g = react_1.default).createElement;
+                            _j = ["g", { transform: "translate(0 ".concat(self.SNPCoverageDisplay.height, ")") }];
+                            return [4 /*yield*/, self.PileupDisplay.renderSvg(__assign(__assign({}, opts), { overrideHeight: pileupHeight }))];
+                        case 3: return [2 /*return*/, (_b.apply(_a, _c.concat([_h.apply(_g, _j.concat([_k.sent()]))])))];
+                    }
+                });
+            });
+        },
+    }); });
 };
-
-var _default = stateModelFactory;
-exports.default = _default;
+exports.default = stateModelFactory;
+//# sourceMappingURL=model.js.map

package/dist/LinearAlignmentsDisplay/models/model.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/models/model.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,6DAIoC;AACpC,qEAAwE;AAGxE,6BAAoC;AACpC,mDAA2E;AAC3E,2CAAuD;AACvD,oEAAuC;AAGvC,IAAM,gBAAgB,GAAG,EAAE,CAAA;AAC3B,IAAM,iBAAiB,GAAG,UACxB,aAA4B,EAC5B,YAAmC;IAEnC,OAAO,uBAAK;SACT,OAAO,CACN,yBAAyB,EACzB,oBAAW,EACX,uBAAK,CAAC,KAAK,CAAC;QACV,aAAa,EAAE,uBAAK,CAAC,KAAK,CACxB,aAAa,CAAC,cAAc,CAAC,qBAAqB,CAAC,CAAC,UAAU,CAC/D;QACD,kBAAkB,EAAE,uBAAK,CAAC,KAAK,CAC7B,aAAa,CAAC,cAAc,CAAC,0BAA0B,CAAC,CAAC,UAAU,CACpE;QACD,YAAY,EAAE,EAAE;QAChB,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,yBAAyB,CAAC;QAC9C,aAAa,EAAE,IAAA,sCAAsB,EAAC,YAAY,CAAC;QACnD,MAAM,EAAE,GAAG;QACX,YAAY,EAAE,IAAI;QAClB,UAAU,EAAE,IAAI;QAChB,wBAAwB,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,MAAM,CAAC;KACpD,CAAC,CACH;SACA,QAAQ,CAAC,cAAM,OAAA,CAAC;QACf,SAAS,EAAE,CAAC;KACb,CAAC,EAFc,CAEd,CAAC;SACF,OAAO,CAAC,UAAA,IAAI,IAAI,OAAA,CAAC;QAChB,cAAc;YACZ,IAAI,CAAC,YAAY,GAAG,CAAC,IAAI,CAAC,YAAY,CAAA;QACxC,CAAC;QACD,YAAY;YACV,IAAI,CAAC,UAAU,GAAG,CAAC,IAAI,CAAC,UAAU,CAAA;QACpC,CAAC;QACD,YAAY,EAAZ,UAAa,SAAiB;YAC5B,IAAI,CAAC,SAAS,GAAG,SAAS,CAAA;QAC5B,CAAC;QACD,oBAAoB,EAApB,UAAqB,CAAS;YAC5B,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA;QACvB,CAAC;KACF,CAAC,EAbe,CAaf,CAAC;SACF,KAAK,CAAC,UAAA,IAAI;QACD,IAAgB,mBAAmB,GAAK,IAAI,eAAT,CAAS;QACpD,OAAO;YACL,IAAI,mBAAmB;gBACrB,IAAM,IAAI,GAAG,IAAA,uBAAO,EAAC,IAAI,EAAE,eAAe,CAAC,CAAA;gBAC3C,IAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,IAAI,CAAC,CAAA;gBACtC,6BACK,IAAI,KACP,IAAI,EAAE,qBAAqB,EAC3B,IAAI,EAAE,UAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,YAAS,EACxC,SAAS,EAAE,UAAG,IAAI,CAAC,aAAa,CAAC,SAAS,gBAAa,IACxD;YACH,CAAC;YAED,cAAc,EAAd,UAAe,QAAgB,EAAE,EAAU;gBACzC,OAAO,IAAI,CAAC,aAAa,CAAC,cAAc,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAA;YACxD,CAAC;YACD,iBAAiB,EAAjB,UAAkB,EAAU;gBAC1B,OAAO,IAAI,CAAC,aAAa,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAA;YACjD,CAAC;YAED,IAAI,QAAQ;gBACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAA;YACpC,CAAC;YAED,IAAI,YAAY;;gBACd,OAAO,MAAA,IAAI,CAAC,aAAa,0CAAE,YAAY,CAAA;YACzC,CAAC;YAED,IAAI,QAAQ;gBACV,OAAO,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAA;YACpC,CAAC;YACD,IAAI,gBAAgB;gBAClB,OAAO,IAAI,CAAC,aAAa,CAAC,gBAAgB,CAAA;YAC5C,CAAC;YACD,IAAI,eAAe;gBACjB,OAAO,IAAI,CAAC,aAAa,CAAC,eAAe,CAAA;YAC3C,CAAC;YAED,IAAI,wBAAwB;gBAC1B,IAAM,IAAI,GAAG,IAAA,uBAAO,EAAC,IAAI,EAAE,oBAAoB,CAAC,CAAA;gBAChD,IAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,IAAI,CAAC,CAAA;gBACtC,6BACK,IAAI,KACP,IAAI,EAAE,0BAA0B,EAChC,IAAI,EAAE,UAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,kBAAe,EAC9C,SAAS,EAAE,UAAG,IAAI,CAAC,aAAa,CAAC,SAAS,qBAAkB,IAC7D;YACH,CAAC;YAED,cAAc,EAAd;gBACE,8CACK,mBAAmB,EAAE;oBACxB;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,iBAAiB;wBACxB,OAAO,EAAE,IAAI,CAAC,aAAa,CAAC,cAAc,EAAE;qBAC7C;oBACD;wBACE,IAAI,EAAE,SAAS;wBACf,KAAK,EAAE,sBAAsB;wBAC7B,OAAO,EAAE,IAAI,CAAC,kBAAkB,CAAC,cAAc,EAAE;qBAClD;0BACF;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC;SACD,OAAO,CAAC,UAAA,IAAI,IAAI,OAAA,CAAC;QAChB,qBAAqB,EAArB,UAAsB,aAAoC;YACxD,IAAI,CAAC,kBAAkB,GAAG;gBACxB,IAAI,EAAE,0BAA0B;gBAChC,aAAa,EAAE,aAAa;gBAC5B,MAAM,EAAE,IAAI,CAAC,YAAY;aAC1B,CAAA;QACH,CAAC;QACD,2BAA2B,EAA3B,UAA4B,KAAa;YACvC,IAAI,CAAC,aAAa,CAAC,2BAA2B,CAAC,KAAK,CAAC,CAAA;YACrD,IAAI,CAAC,kBAAkB,CAAC,2BAA2B,CAAC,KAAK,CAAC,CAAA;QAC5D,CAAC;QACD,gBAAgB,EAAhB,UAAiB,aAAoC;YACnD,IAAI,CAAC,aAAa,GAAG;gBACnB,IAAI,EAAE,qBAAqB;gBAC3B,aAAa,EAAE,aAAa;aAC7B,CAAA;QACH,CAAC;QACD,SAAS,EAAT,UAAU,aAAqB;YAC7B,IAAI,aAAa,GAAG,gBAAgB,EAAE;gBACpC,IAAI,CAAC,MAAM,GAAG,aAAa,CAAA;aAC5B;iBAAM;gBACL,IAAI,CAAC,MAAM,GAAG,gBAAgB,CAAA;aAC/B;YACD,OAAO,IAAI,CAAC,MAAM,CAAA;QACpB,CAAC;QACD,YAAY,EAAZ,UAAa,QAAgB;YAC3B,IAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAA;YAC7B,IAAM,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,GAAG,QAAQ,CAAC,CAAA;YACxD,OAAO,SAAS,GAAG,SAAS,CAAA;QAC9B,CAAC;KACF,CAAC,EA/Be,CA+Bf,CAAC;SACF,OAAO,CAAC,UAAA,IAAI,IAAI,OAAA,CAAC;QAChB,WAAW;YACT,IAAA,6BAAW,EACT,IAAI,EACJ,IAAA,cAAO,EAAC;gBACN,IAAI,CAAC,IAAI,CAAC,kBAAkB,EAAE;oBAC5B,IAAI,CAAC,qBAAqB,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;iBAC1D;qBAAM,IACL,CAAC,IAAA,yBAAS,EACR,IAAI,CAAC,wBAAwB,EAC7B,IAAA,6BAAW,EAAC,IAAI,CAAC,kBAAkB,CAAC,aAAa,CAAC,CACnD,EACD;oBACA,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;oBACpD,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;iBACjE;gBAED,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE;oBACvB,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAA;iBAChD;qBAAM,IACL,CAAC,IAAA,yBAAS,EACR,IAAI,CAAC,mBAAmB,EACxB,IAAA,6BAAW,EAAC,IAAI,CAAC,aAAa,CAAC,aAAa,CAAC,CAC9C,EACD;oBACA,IAAI,CAAC,aAAa,CAAC,SAAS,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAA;iBACvD;gBAED,mEAAmE;gBACnE,gEAAgE;gBAChE,SAAS;gBACT,IACE,IAAI,CAAC,aAAa,CAAC,QAAQ;oBAC3B,CAAC,IAAA,yBAAS,EACR,IAAA,6BAAW,EAAC,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,EACxC,IAAA,6BAAW,EAAC,IAAI,CAAC,kBAAkB,CAAC,QAAQ,CAAC,CAC9C,EACD;oBACA,IAAI,CAAC,kBAAkB,CAAC,WAAW,CACjC,IAAA,6BAAW,EAAC,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,CACzC,CAAA;iBACF;gBACD,IACE,IAAI,CAAC,aAAa,CAAC,OAAO;oBAC1B,CAAC,IAAA,yBAAS,EACR,IAAA,6BAAW,EAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,EACvC,IAAI,CAAC,kBAAkB,CAAC,OAAO;wBAC7B,CAAC,CAAC,IAAA,6BAAW,EAAC,IAAI,CAAC,kBAAkB,CAAC,OAAO,CAAC;wBAC9C,CAAC,CAAC,EAAE,CACP,EACD;oBACA,IAAI,CAAC,kBAAkB,CAAC,UAAU,CAChC,IAAA,6BAAW,EAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CACxC,CAAA;iBACF;YACH,CAAC,CAAC,CACH,CAAA;YACD,IAAA,6BAAW,EACT,IAAI,EACJ,IAAA,cAAO,EAAC;gBACN,IAAI,CAAC,oBAAoB,CAAC,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAA;YAC3D,CAAC,CAAC,CACH,CAAA;QACH,CAAC;QACK,SAAS,EAAf,UAAgB,IAAmC;;;;;;4BAC3C,YAAY,GAAG,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAA;4BACjE,qBAAM,IAAA,WAAI,EAAC,cAAM,OAAA,IAAI,CAAC,aAAa,CAAC,KAAK,EAAxB,CAAwB,CAAC,EAAA;;4BAA1C,SAA0C,CAAA;;;;;4BAGlC,qBAAM,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,IAAI,CAAC,EAAA;;4CAAjD,wBAAI,SAA6C,GAAK;;yCACnD,SAAS,EAAE,sBAAe,IAAI,CAAC,kBAAkB,CAAC,MAAM,MAAG;4BAC3D,qBAAM,IAAI,CAAC,aAAa,CAAC,SAAS,uBAC9B,IAAI,KACP,cAAc,EAAE,YAAY,IAC5B,EAAA;gCAPR,sBAAO,CACL,wBAEE,wBACG,SAGC,GACA,GACH,CACJ,EAAA;;;;SACF;KACF,CAAC,EA/Ee,CA+Ef,CAAC,CAAA;AACP,CAAC,CAAA;AAED,kBAAe,iBAAiB,CAAA"}