@jbrowse/plugin-alignments 1.7.9 → 2.0.0

package/esm/LinearPileupDisplay/components/FilterByTag.js

@@ -0,0 +1,123 @@
+import React, { useState } from 'react';
+import { observer } from 'mobx-react';
+import { Button, Dialog, DialogActions, DialogContent, DialogTitle, IconButton, Link, Paper, TextField, Typography, } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import CloseIcon from '@mui/icons-material/Close';
+const useStyles = makeStyles()(theme => ({
+    paper: {
+        padding: theme.spacing(2),
+        margin: theme.spacing(2),
+    },
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+    field: {
+        margin: theme.spacing(2),
+    },
+}));
+const flagNames = [
+    'read paired',
+    'read mapped in proper pair',
+    'read unmapped',
+    'mate unmapped',
+    'read reverse strand',
+    'mate reverse strand',
+    'first in pair',
+    'second in pair',
+    'not primary alignment',
+    'read fails platform/vendor quality checks',
+    'read is PCR or optical duplicate',
+    'supplementary alignment',
+];
+function Bitmask(props) {
+    const { flag = 0, setFlag } = props;
+    return (React.createElement(React.Fragment, null,
+        React.createElement(TextField, { type: "number", value: flag, onChange: event => setFlag(+event.target.value) }),
+        flagNames.map((name, index) => {
+            const val = flag & (1 << index);
+            const key = `${name}_${val}`;
+            return (React.createElement("div", { key: key },
+                React.createElement("input", { type: "checkbox", checked: Boolean(val), onChange: event => {
+                        if (event.target.checked) {
+                            setFlag(flag | (1 << index));
+                        }
+                        else {
+                            setFlag(flag & ~(1 << index));
+                        }
+                    } }),
+                React.createElement("label", { htmlFor: key }, name)));
+        })));
+}
+function FilterByTagDlg(props) {
+    var _a, _b;
+    const { model, handleClose } = props;
+    const { classes } = useStyles();
+    const { filterBy } = model;
+    const [flagInclude, setFlagInclude] = useState(filterBy === null || filterBy === void 0 ? void 0 : filterBy.flagInclude);
+    const [flagExclude, setFlagExclude] = useState(filterBy === null || filterBy === void 0 ? void 0 : filterBy.flagExclude);
+    const [tag, setTag] = useState(((_a = filterBy === null || filterBy === void 0 ? void 0 : filterBy.tagFilter) === null || _a === void 0 ? void 0 : _a.tag) || '');
+    const [tagValue, setTagValue] = useState(((_b = filterBy === null || filterBy === void 0 ? void 0 : filterBy.tagFilter) === null || _b === void 0 ? void 0 : _b.value) || '');
+    const [readName, setReadName] = useState((filterBy === null || filterBy === void 0 ? void 0 : filterBy.readName) || '');
+    const validTag = tag.match(/^[A-Za-z][A-Za-z0-9]$/);
+    const site = 'https://broadinstitute.github.io/picard/explain-flags.html';
+    return (React.createElement(Dialog, { open: true, onClose: handleClose },
+        React.createElement(DialogTitle, null,
+            "Filter options",
+            React.createElement(IconButton, { "aria-label": "close", className: classes.closeButton, onClick: handleClose },
+                React.createElement(CloseIcon, null))),
+        React.createElement(DialogContent, null,
+            React.createElement(Typography, null,
+                "Set filter bitmask options. Refer to ",
+                React.createElement(Link, { href: site }, site),
+                ' ',
+                "for details"),
+            React.createElement(Paper, { className: classes.paper, variant: "outlined" },
+                React.createElement("div", { style: { display: 'flex' } },
+                    React.createElement("div", null,
+                        React.createElement(Typography, null, "Read must have ALL these flags"),
+                        React.createElement(Bitmask, { flag: flagInclude, setFlag: setFlagInclude })),
+                    React.createElement("div", null,
+                        React.createElement(Typography, null, "Read must have NONE of these flags"),
+                        React.createElement(Bitmask, { flag: flagExclude, setFlag: setFlagExclude })))),
+            React.createElement(Paper, { className: classes.paper, variant: "outlined" },
+                React.createElement(Typography, null, "Filter by tag name and value. Use * in the value field to get all reads containing any value for that tag. Example: filter tag name SA with value * to get all split/supplementary reads. Other examples include HP for haplotype, or RG for read group"),
+                React.createElement(TextField, { className: classes.field, value: tag, onChange: event => {
+                        setTag(event.target.value);
+                    }, placeholder: "Enter tag name", inputProps: {
+                        maxLength: 2,
+                        'data-testid': 'color-tag-name-input',
+                    }, error: tag.length === 2 && !validTag, helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '', "data-testid": "color-tag-name" }),
+                React.createElement(TextField, { className: classes.field, value: tagValue, onChange: event => {
+                        setTagValue(event.target.value);
+                    }, placeholder: "Enter tag value", inputProps: {
+                        'data-testid': 'color-tag-name-input',
+                    }, "data-testid": "color-tag-value" })),
+            React.createElement(Paper, { className: classes.paper, variant: "outlined" },
+                React.createElement(Typography, null, "Filter by read name"),
+                React.createElement(TextField, { className: classes.field, value: readName, onChange: event => {
+                        setReadName(event.target.value);
+                    }, placeholder: "Enter read name", inputProps: {
+                        'data-testid': 'color-tag-readname-input',
+                    }, "data-testid": "color-tag-readname" })),
+            React.createElement(DialogActions, null,
+                React.createElement(Button, { variant: "contained", color: "primary", autoFocus: true, type: "submit", onClick: () => {
+                        model.setFilterBy({
+                            flagInclude,
+                            flagExclude,
+                            readName,
+                            tagFilter: tag !== ''
+                                ? {
+                                    tag,
+                                    value: tagValue,
+                                }
+                                : undefined,
+                        });
+                        handleClose();
+                    } }, "Submit"),
+                React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel")))));
+}
+export default observer(FilterByTagDlg);
+//# sourceMappingURL=FilterByTag.js.map

package/esm/LinearPileupDisplay/components/FilterByTag.js.map

@@ -0,0 +1 @@
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package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts

@@ -0,0 +1,13 @@
+/// <reference types="react" />
+export interface LinearPileupDisplayBlurbProps {
+    model: {
+        sortedBy?: {
+            pos: number;
+            refName: number;
+            type: string;
+        };
+    };
+}
+declare function LinearPileupDisplayBlurb(props: LinearPileupDisplayBlurbProps): JSX.Element | null;
+declare const _default: typeof LinearPileupDisplayBlurb;
+export default _default;

package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js

@@ -0,0 +1,13 @@
+import React from 'react';
+import { observer } from 'mobx-react';
+import Typography from '@mui/material/Typography';
+function LinearPileupDisplayBlurb(props) {
+    const { model } = props;
+    const { sortedBy } = model;
+    return sortedBy ? (React.createElement("div", { "data-testid": `blurb-${model.sortedBy}`, style: { backgroundColor: 'white' } },
+        React.createElement(Typography, { color: "secondary", variant: "caption" }, model.sortedBy
+            ? `Sorted by ${sortedBy.type.toLowerCase()} at ${sortedBy.refName}:${sortedBy.pos}`
+            : null))) : null;
+}
+export default observer(LinearPileupDisplayBlurb);
+//# sourceMappingURL=LinearPileupDisplayBlurb.js.map

package/esm/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js.map

@@ -0,0 +1 @@
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package/esm/LinearPileupDisplay/components/SetFeatureHeight.d.ts

@@ -0,0 +1,16 @@
+/// <reference types="react" />
+declare function SetFeatureHeightDlg(props: {
+    model: {
+        minScore: number;
+        maxScore: number;
+        setMinScore: Function;
+        setMaxScore: Function;
+        setFeatureHeight: Function;
+        setNoSpacing: Function;
+        featureHeightSetting: number;
+        noSpacing: boolean;
+    };
+    handleClose: () => void;
+}): JSX.Element;
+declare const _default: typeof SetFeatureHeightDlg;
+export default _default;

package/esm/LinearPileupDisplay/components/SetFeatureHeight.js

@@ -0,0 +1,41 @@
+import React, { useState } from 'react';
+import { observer } from 'mobx-react';
+import { Button, Checkbox, Dialog, DialogActions, DialogContent, DialogTitle, FormControlLabel, IconButton, TextField, Typography, } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import CloseIcon from '@mui/icons-material/Close';
+const useStyles = makeStyles()(theme => ({
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+}));
+function SetFeatureHeightDlg(props) {
+    const { classes } = useStyles();
+    const { model, handleClose } = props;
+    const { featureHeightSetting, noSpacing: noSpacingSetting } = model;
+    const [height, setHeight] = useState(`${featureHeightSetting}`);
+    const [noSpacing, setNoSpacing] = useState(noSpacingSetting);
+    const ok = height !== '' && !Number.isNaN(+height);
+    return (React.createElement(Dialog, { open: true, onClose: handleClose },
+        React.createElement(DialogTitle, null,
+            "Set feature height",
+            React.createElement(IconButton, { className: classes.closeButton, onClick: handleClose },
+                React.createElement(CloseIcon, null))),
+        React.createElement(DialogContent, null,
+            React.createElement(Typography, null, "Adjust the feature height and whether there is any spacing between features. Setting feature height to 1 and removing spacing makes the display very compact."),
+            React.createElement(TextField, { value: height, helperText: "Feature height", onChange: event => {
+                    setHeight(event.target.value);
+                } }),
+            React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: !!noSpacing, onChange: () => setNoSpacing(val => !val) }), label: "Remove spacing between features in y-direction?" }),
+            React.createElement(DialogActions, null,
+                React.createElement(Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !ok, onClick: () => {
+                        model.setFeatureHeight(height !== '' && !Number.isNaN(+height) ? +height : undefined);
+                        model.setNoSpacing(noSpacing);
+                        handleClose();
+                    } }, "Submit"),
+                React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel")))));
+}
+export default observer(SetFeatureHeightDlg);
+//# sourceMappingURL=SetFeatureHeight.js.map

package/esm/LinearPileupDisplay/components/SetFeatureHeight.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SetFeatureHeight.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/SetFeatureHeight.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAEjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,mBAAmB,CAAC,KAY5B;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,oBAAoB,EAAE,SAAS,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,GAAG,oBAAoB,EAAE,CAAC,CAAA;IAC/D,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,gBAAgB,CAAC,CAAA;IAE5D,MAAM,EAAE,GAAG,MAAM,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,CAAA;IAElD,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC/B,oBAAC,WAAW;;YAEV,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,WAAW,EAAE,OAAO,EAAE,WAAW;gBAC9D,oBAAC,SAAS,OAAG,CACF,CACD;QACd,oBAAC,aAAa;YACZ,oBAAC,UAAU,wKAIE;YACb,oBAAC,SAAS,IACR,KAAK,EAAE,MAAM,EACb,UAAU,EAAC,gBAAgB,EAC3B,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBAC/B,CAAC,GACD;YACF,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,CAAC,SAAS,EACpB,QAAQ,EAAE,GAAG,EAAE,CAAC,YAAY,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,GACzC,EAEJ,KAAK,EAAC,iDAAiD,GACvD;YACF,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,SAAS,QACT,QAAQ,EAAE,CAAC,EAAE,EACb,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,gBAAgB,CACpB,MAAM,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAC9D,CAAA;wBACD,KAAK,CAAC,YAAY,CAAC,SAAS,CAAC,CAAA;wBAC7B,WAAW,EAAE,CAAA;oBACf,CAAC,aAGM;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,aAGrB,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,mBAAmB,CAAC,CAAA"}

package/esm/LinearPileupDisplay/components/SetMaxHeight.d.ts

@@ -0,0 +1,10 @@
+/// <reference types="react" />
+declare function SetMaxHeightDlg(props: {
+    model: {
+        maxHeight?: number;
+        setMaxHeight: Function;
+    };
+    handleClose: () => void;
+}): JSX.Element;
+declare const _default: typeof SetMaxHeightDlg;
+export default _default;

package/esm/LinearPileupDisplay/components/SetMaxHeight.js

@@ -0,0 +1,43 @@
+import React, { useState } from 'react';
+import { observer } from 'mobx-react';
+import { Button, Dialog, DialogActions, DialogContent, DialogTitle, IconButton, TextField, Typography, } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import CloseIcon from '@mui/icons-material/Close';
+const useStyles = makeStyles()(theme => ({
+    root: {
+        width: 500,
+    },
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+    field: {
+        margin: theme.spacing(2),
+    },
+}));
+function SetMaxHeightDlg(props) {
+    const { model, handleClose } = props;
+    const { classes } = useStyles();
+    const { maxHeight = '' } = model;
+    const [max, setMax] = useState(`${maxHeight}`);
+    return (React.createElement(Dialog, { open: true, onClose: handleClose },
+        React.createElement(DialogTitle, null,
+            "Filter options",
+            React.createElement(IconButton, { "aria-label": "close", className: classes.closeButton, onClick: handleClose },
+                React.createElement(CloseIcon, null))),
+        React.createElement(DialogContent, { className: classes.root },
+            React.createElement(Typography, null, "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\""),
+            React.createElement(TextField, { value: max, onChange: event => {
+                    setMax(event.target.value);
+                }, placeholder: "Enter max height for layout" }),
+            React.createElement(DialogActions, null,
+                React.createElement(Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, onClick: () => {
+                        model.setMaxHeight(max !== '' && !Number.isNaN(+max) ? +max : undefined);
+                        handleClose();
+                    } }, "Submit"),
+                React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel")))));
+}
+export default observer(SetMaxHeightDlg);
+//# sourceMappingURL=SetMaxHeight.js.map

package/esm/LinearPileupDisplay/components/SetMaxHeight.js.map

@@ -0,0 +1 @@
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package/esm/LinearPileupDisplay/components/SortByTag.d.ts

@@ -0,0 +1,9 @@
+/// <reference types="react" />
+declare function SortByTagDlg(props: {
+    model: {
+        setSortedBy: Function;
+    };
+    handleClose: () => void;
+}): JSX.Element;
+declare const _default: typeof SortByTagDlg;
+export default _default;

package/esm/LinearPileupDisplay/components/SortByTag.js

@@ -0,0 +1,43 @@
+import React, { useState } from 'react';
+import { observer } from 'mobx-react';
+import { Button, Dialog, DialogActions, DialogContent, DialogTitle, IconButton, TextField, Typography, } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import CloseIcon from '@mui/icons-material/Close';
+const useStyles = makeStyles()(theme => ({
+    root: {
+        margin: 0,
+        padding: theme.spacing(2),
+    },
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+}));
+function SortByTagDlg(props) {
+    const { classes } = useStyles();
+    const { model, handleClose } = props;
+    const [tag, setTag] = useState('');
+    const validTag = tag.match(/^[A-Za-z][A-Za-z0-9]$/);
+    return (React.createElement(Dialog, { open: true, onClose: handleClose },
+        React.createElement(DialogTitle, null,
+            "Sort by tag",
+            React.createElement(IconButton, { "aria-label": "close", className: classes.closeButton, onClick: handleClose },
+                React.createElement(CloseIcon, null))),
+        React.createElement(DialogContent, null,
+            React.createElement(Typography, null, "Set the tag to sort by"),
+            React.createElement(Typography, { color: "textSecondary" }, "Examples: HP for haplotype, RG for read group, etc."),
+            React.createElement(TextField, { value: tag, onChange: event => setTag(event.target.value), placeholder: "Enter tag name", inputProps: {
+                    maxLength: 2,
+                    'data-testid': 'sort-tag-name-input',
+                }, error: tag.length === 2 && !validTag, helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '', autoComplete: "off", "data-testid": "sort-tag-name" }),
+            React.createElement(DialogActions, null,
+                React.createElement(Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, onClick: () => {
+                        model.setSortedBy('tag', tag);
+                        handleClose();
+                    } }, "Submit"),
+                React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel")))));
+}
+export default observer(SortByTagDlg);
+//# sourceMappingURL=SortByTag.js.map

package/esm/LinearPileupDisplay/components/SortByTag.js.map

@@ -0,0 +1 @@
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package/esm/LinearPileupDisplay/configSchema.d.ts

@@ -0,0 +1,6 @@
+import { Instance } from 'mobx-state-tree';
+import PluginManager from '@jbrowse/core/PluginManager';
+declare function PileupConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export declare type LinearPileupDisplayConfigModel = ReturnType<typeof PileupConfigFactory>;
+export declare type LinearPileupDisplayConfig = Instance<LinearPileupDisplayConfigModel>;
+export default PileupConfigFactory;

package/esm/LinearPileupDisplay/configSchema.js

@@ -0,0 +1,41 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+import { linearBasicDisplayConfigSchemaFactory } from '@jbrowse/plugin-linear-genome-view';
+import { types } from 'mobx-state-tree';
+function PileupConfigFactory(pluginManager) {
+    const PileupRendererConfigSchema = pluginManager.getRendererType('PileupRenderer').configSchema;
+    // modify config schema to take in a sub coverage display
+    return ConfigurationSchema('LinearPileupDisplay', {
+        defaultRendering: {
+            type: 'stringEnum',
+            model: types.enumeration('Rendering', ['pileup']),
+            defaultValue: 'pileup',
+        },
+        renderers: ConfigurationSchema('RenderersConfiguration', {
+            PileupRenderer: PileupRendererConfigSchema,
+        }),
+        renderer: '',
+        maxFeatureScreenDensity: {
+            type: 'number',
+            description: 'maximum features per pixel that is displayed in the view',
+            defaultValue: 5,
+        },
+        colorScheme: {
+            type: 'stringEnum',
+            model: types.enumeration('colorScheme', [
+                'strand',
+                'normal',
+                'insertSize',
+                'insertSizeAndOrientation',
+                'mappingQuality',
+                'tag',
+            ]),
+            description: 'color scheme to use',
+            defaultValue: 'normal',
+        },
+    }, {
+        baseConfiguration: linearBasicDisplayConfigSchemaFactory(pluginManager),
+        explicitlyTyped: true,
+    });
+}
+export default PileupConfigFactory;
+//# sourceMappingURL=configSchema.js.map

package/esm/LinearPileupDisplay/configSchema.js.map

@@ -0,0 +1 @@
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package/esm/LinearPileupDisplay/index.d.ts

@@ -0,0 +1,2 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+export default function register(pluginManager: PluginManager): void;

package/esm/LinearPileupDisplay/index.js

@@ -0,0 +1,18 @@
+import configSchemaFactory from './configSchema';
+import modelFactory from './model';
+import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType';
+import { BaseLinearDisplayComponent } from '@jbrowse/plugin-linear-genome-view';
+export default function register(pluginManager) {
+    pluginManager.addDisplayType(() => {
+        const configSchema = configSchemaFactory(pluginManager);
+        return new DisplayType({
+            name: 'LinearPileupDisplay',
+            configSchema,
+            stateModel: modelFactory(configSchema),
+            trackType: 'AlignmentsTrack',
+            viewType: 'LinearGenomeView',
+            ReactComponent: BaseLinearDisplayComponent,
+        });
+    });
+}
+//# sourceMappingURL=index.js.map

package/esm/LinearPileupDisplay/index.js.map

@@ -0,0 +1 @@
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