@jbrowse/plugin-alignments 1.7.9 → 2.0.0

package/dist/PileupRPC/rpcMethods.js

@@ -1,285 +1,206 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
 exports.PileupGetVisibleModifications = exports.PileupGetGlobalValueForTag = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _get2 = _interopRequireDefault(require("@babel/runtime/helpers/get"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _dataAdapterCache = require("@jbrowse/core/data_adapters/dataAdapterCache");
-
-var _RpcMethodType3 = _interopRequireDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodType"));
-
-var _util = require("@jbrowse/core/util");
-
-var _operators = require("rxjs/operators");
-
-var _util2 = require("../util");
-
-var _MismatchParser = require("../BamAdapter/MismatchParser");
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var PileupGetGlobalValueForTag = /*#__PURE__*/function (_RpcMethodType) {
-  (0, _inherits2.default)(PileupGetGlobalValueForTag, _RpcMethodType);
-
-  var _super = _createSuper(PileupGetGlobalValueForTag);
-
-  function PileupGetGlobalValueForTag() {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, PileupGetGlobalValueForTag);
-
-    for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
-      args[_key] = arguments[_key];
+var dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
+var RpcMethodType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodType"));
+var util_1 = require("@jbrowse/core/util");
+var operators_1 = require("rxjs/operators");
+var util_2 = require("../util");
+var MismatchParser_1 = require("../BamAdapter/MismatchParser");
+var PileupGetGlobalValueForTag = /** @class */ (function (_super) {
+    __extends(PileupGetGlobalValueForTag, _super);
+    function PileupGetGlobalValueForTag() {
+        var _this = _super !== null && _super.apply(this, arguments) || this;
+        _this.name = 'PileupGetGlobalValueForTag';
+        return _this;
     }
-
-    _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'PileupGetGlobalValueForTag');
-    return _this;
-  }
-
-  (0, _createClass2.default)(PileupGetGlobalValueForTag, [{
-    key: "serializeArguments",
-    value: function () {
-      var _serializeArguments = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args, rpcDriverClassName) {
-        var _rootModel$session;
-
-        var rootModel, assemblyManager, renamedArgs;
-        return _regenerator.default.wrap(function _callee$(_context) {
-          while (1) {
-            switch (_context.prev = _context.next) {
-              case 0:
-                rootModel = this.pluginManager.rootModel;
-                assemblyManager = rootModel === null || rootModel === void 0 ? void 0 : (_rootModel$session = rootModel.session) === null || _rootModel$session === void 0 ? void 0 : _rootModel$session.assemblyManager;
-
-                if (assemblyManager) {
-                  _context.next = 4;
-                  break;
+    PileupGetGlobalValueForTag.prototype.serializeArguments = function (args, rpcDriverClassName) {
+        var _a;
+        return __awaiter(this, void 0, void 0, function () {
+            var rootModel, assemblyManager, renamedArgs;
+            return __generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0:
+                        rootModel = this.pluginManager.rootModel;
+                        assemblyManager = (_a = rootModel === null || rootModel === void 0 ? void 0 : rootModel.session) === null || _a === void 0 ? void 0 : _a.assemblyManager;
+                        if (!assemblyManager) {
+                            throw new Error('no assembly manager available');
+                        }
+                        return [4 /*yield*/, (0, util_1.renameRegionsIfNeeded)(assemblyManager, args)];
+                    case 1:
+                        renamedArgs = _b.sent();
+                        return [2 /*return*/, _super.prototype.serializeArguments.call(this, renamedArgs, rpcDriverClassName)];
                 }
-
-                throw new Error('no assembly manager available');
-
-              case 4:
-                _context.next = 6;
-                return (0, _util.renameRegionsIfNeeded)(assemblyManager, args);
-
-              case 6:
-                renamedArgs = _context.sent;
-                return _context.abrupt("return", (0, _get2.default)((0, _getPrototypeOf2.default)(PileupGetGlobalValueForTag.prototype), "serializeArguments", this).call(this, renamedArgs, rpcDriverClassName));
-
-              case 8:
-              case "end":
-                return _context.stop();
-            }
-          }
-        }, _callee, this);
-      }));
-
-      function serializeArguments(_x, _x2) {
-        return _serializeArguments.apply(this, arguments);
-      }
-
-      return serializeArguments;
-    }()
-  }, {
-    key: "execute",
-    value: function () {
-      var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(args, rpcDriverClassName) {
-        var deserializedArgs, adapterConfig, sessionId, regions, tag, dataAdapter, features, featuresArray, uniqueValues;
-        return _regenerator.default.wrap(function _callee2$(_context2) {
-          while (1) {
-            switch (_context2.prev = _context2.next) {
-              case 0:
-                _context2.next = 2;
-                return this.deserializeArguments(args, rpcDriverClassName);
-
-              case 2:
-                deserializedArgs = _context2.sent;
-                adapterConfig = deserializedArgs.adapterConfig, sessionId = deserializedArgs.sessionId, regions = deserializedArgs.regions, tag = deserializedArgs.tag;
-                _context2.next = 6;
-                return (0, _dataAdapterCache.getAdapter)(this.pluginManager, sessionId, adapterConfig);
-
-              case 6:
-                dataAdapter = _context2.sent.dataAdapter;
-                features = dataAdapter.getFeaturesInMultipleRegions(regions);
-                _context2.next = 10;
-                return features.pipe((0, _operators.toArray)()).toPromise();
-
-              case 10:
-                featuresArray = _context2.sent;
-                uniqueValues = new Set();
-                featuresArray.forEach(function (feature) {
-                  var tags = feature.get('tags');
-                  var val = tags ? tags[tag] : feature.get(tag);
-
-                  if (val !== undefined) {
-                    uniqueValues.add("".concat(val));
-                  }
-                });
-                return _context2.abrupt("return", (0, _toConsumableArray2.default)(uniqueValues));
-
-              case 14:
-              case "end":
-                return _context2.stop();
-            }
-          }
-        }, _callee2, this);
-      }));
-
-      function execute(_x3, _x4) {
-        return _execute.apply(this, arguments);
-      }
-
-      return execute;
-    }()
-  }]);
-  return PileupGetGlobalValueForTag;
-}(_RpcMethodType3.default);
-
+            });
+        });
+    };
+    PileupGetGlobalValueForTag.prototype.execute = function (args, rpcDriverClassName) {
+        return __awaiter(this, void 0, void 0, function () {
+            var deserializedArgs, adapterConfig, sessionId, regions, tag, dataAdapter, features, featuresArray, uniqueValues;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.deserializeArguments(args, rpcDriverClassName)];
+                    case 1:
+                        deserializedArgs = _a.sent();
+                        adapterConfig = deserializedArgs.adapterConfig, sessionId = deserializedArgs.sessionId, regions = deserializedArgs.regions, tag = deserializedArgs.tag;
+                        return [4 /*yield*/, (0, dataAdapterCache_1.getAdapter)(this.pluginManager, sessionId, adapterConfig)];
+                    case 2:
+                        dataAdapter = (_a.sent()).dataAdapter;
+                        features = dataAdapter.getFeaturesInMultipleRegions(regions);
+                        return [4 /*yield*/, features.pipe((0, operators_1.toArray)()).toPromise()];
+                    case 3:
+                        featuresArray = _a.sent();
+                        uniqueValues = new Set();
+                        featuresArray.forEach(function (feature) {
+                            var tags = feature.get('tags');
+                            var val = tags ? tags[tag] : feature.get(tag);
+                            if (val !== undefined) {
+                                uniqueValues.add("".concat(val));
+                            }
+                        });
+                        return [2 /*return*/, __spreadArray([], __read(uniqueValues), false)];
+                }
+            });
+        });
+    };
+    return PileupGetGlobalValueForTag;
+}(RpcMethodType_1.default));
 exports.PileupGetGlobalValueForTag = PileupGetGlobalValueForTag;
-
-var PileupGetVisibleModifications = /*#__PURE__*/function (_RpcMethodType2) {
-  (0, _inherits2.default)(PileupGetVisibleModifications, _RpcMethodType2);
-
-  var _super2 = _createSuper(PileupGetVisibleModifications);
-
-  function PileupGetVisibleModifications() {
-    var _this2;
-
-    (0, _classCallCheck2.default)(this, PileupGetVisibleModifications);
-
-    for (var _len2 = arguments.length, args = new Array(_len2), _key2 = 0; _key2 < _len2; _key2++) {
-      args[_key2] = arguments[_key2];
+var PileupGetVisibleModifications = /** @class */ (function (_super) {
+    __extends(PileupGetVisibleModifications, _super);
+    function PileupGetVisibleModifications() {
+        var _this = _super !== null && _super.apply(this, arguments) || this;
+        _this.name = 'PileupGetVisibleModifications';
+        return _this;
     }
-
-    _this2 = _super2.call.apply(_super2, [this].concat(args));
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this2), "name", 'PileupGetVisibleModifications');
-    return _this2;
-  }
-
-  (0, _createClass2.default)(PileupGetVisibleModifications, [{
-    key: "serializeArguments",
-    value: function () {
-      var _serializeArguments2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(args, rpcDriverClassName) {
-        var _rootModel$session2;
-
-        var rootModel, assemblyManager, renamedArgs;
-        return _regenerator.default.wrap(function _callee3$(_context3) {
-          while (1) {
-            switch (_context3.prev = _context3.next) {
-              case 0:
-                rootModel = this.pluginManager.rootModel;
-                assemblyManager = rootModel === null || rootModel === void 0 ? void 0 : (_rootModel$session2 = rootModel.session) === null || _rootModel$session2 === void 0 ? void 0 : _rootModel$session2.assemblyManager;
-
-                if (assemblyManager) {
-                  _context3.next = 4;
-                  break;
+    PileupGetVisibleModifications.prototype.serializeArguments = function (args, rpcDriverClassName) {
+        var _a;
+        return __awaiter(this, void 0, void 0, function () {
+            var rootModel, assemblyManager, renamedArgs;
+            return __generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0:
+                        rootModel = this.pluginManager.rootModel;
+                        assemblyManager = (_a = rootModel === null || rootModel === void 0 ? void 0 : rootModel.session) === null || _a === void 0 ? void 0 : _a.assemblyManager;
+                        if (!assemblyManager) {
+                            throw new Error('no assembly manager available');
+                        }
+                        return [4 /*yield*/, (0, util_1.renameRegionsIfNeeded)(assemblyManager, args)];
+                    case 1:
+                        renamedArgs = _b.sent();
+                        return [2 /*return*/, _super.prototype.serializeArguments.call(this, renamedArgs, rpcDriverClassName)];
                 }
-
-                throw new Error('no assembly manager available');
-
-              case 4:
-                _context3.next = 6;
-                return (0, _util.renameRegionsIfNeeded)(assemblyManager, args);
-
-              case 6:
-                renamedArgs = _context3.sent;
-                return _context3.abrupt("return", (0, _get2.default)((0, _getPrototypeOf2.default)(PileupGetVisibleModifications.prototype), "serializeArguments", this).call(this, renamedArgs, rpcDriverClassName));
-
-              case 8:
-              case "end":
-                return _context3.stop();
-            }
-          }
-        }, _callee3, this);
-      }));
-
-      function serializeArguments(_x5, _x6) {
-        return _serializeArguments2.apply(this, arguments);
-      }
-
-      return serializeArguments;
-    }()
-  }, {
-    key: "execute",
-    value: function () {
-      var _execute2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(args, rpcDriverClassName) {
-        var deserializedArgs, adapterConfig, sessionId, regions, dataAdapter, features, featuresArray, uniqueValues;
-        return _regenerator.default.wrap(function _callee4$(_context4) {
-          while (1) {
-            switch (_context4.prev = _context4.next) {
-              case 0:
-                _context4.next = 2;
-                return this.deserializeArguments(args, rpcDriverClassName);
-
-              case 2:
-                deserializedArgs = _context4.sent;
-                adapterConfig = deserializedArgs.adapterConfig, sessionId = deserializedArgs.sessionId, regions = deserializedArgs.regions;
-                _context4.next = 6;
-                return (0, _dataAdapterCache.getAdapter)(this.pluginManager, sessionId, adapterConfig);
-
-              case 6:
-                dataAdapter = _context4.sent.dataAdapter;
-                features = dataAdapter.getFeaturesInMultipleRegions(regions);
-                _context4.next = 10;
-                return features.pipe((0, _operators.toArray)()).toPromise();
-
-              case 10:
-                featuresArray = _context4.sent;
-                uniqueValues = new Set();
-                featuresArray.forEach(function (feature) {
-                  var val = (0, _util2.getTagAlt)(feature, 'MM', 'Mm') || '';
-
-                  if (val !== undefined) {
-                    (0, _MismatchParser.getModificationTypes)(val).forEach(function (t) {
-                      return uniqueValues.add(t);
-                    });
-                  }
-                });
-                return _context4.abrupt("return", (0, _toConsumableArray2.default)(uniqueValues));
-
-              case 14:
-              case "end":
-                return _context4.stop();
-            }
-          }
-        }, _callee4, this);
-      }));
-
-      function execute(_x7, _x8) {
-        return _execute2.apply(this, arguments);
-      }
-
-      return execute;
-    }()
-  }]);
-  return PileupGetVisibleModifications;
-}(_RpcMethodType3.default);
-
-exports.PileupGetVisibleModifications = PileupGetVisibleModifications;
+            });
+        });
+    };
+    PileupGetVisibleModifications.prototype.execute = function (args, rpcDriverClassName) {
+        return __awaiter(this, void 0, void 0, function () {
+            var deserializedArgs, adapterConfig, sessionId, regions, dataAdapter, features, featuresArray, uniqueValues;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.deserializeArguments(args, rpcDriverClassName)];
+                    case 1:
+                        deserializedArgs = _a.sent();
+                        adapterConfig = deserializedArgs.adapterConfig, sessionId = deserializedArgs.sessionId, regions = deserializedArgs.regions;
+                        return [4 /*yield*/, (0, dataAdapterCache_1.getAdapter)(this.pluginManager, sessionId, adapterConfig)];
+                    case 2:
+                        dataAdapter = (_a.sent()).dataAdapter;
+                        features = dataAdapter.getFeaturesInMultipleRegions(regions);
+                        return [4 /*yield*/, features.pipe((0, operators_1.toArray)()).toPromise()];
+                    case 3:
+                        featuresArray = _a.sent();
+                        uniqueValues = new Set();
+                        featuresArray.forEach(function (feature) {
+                            var val = (0, util_2.getTagAlt)(feature, 'MM', 'Mm') || '';
+                            if (val !== undefined) {
+                                (0, MismatchParser_1.getModificationTypes)(val).forEach(function (t) { return uniqueValues.add(t); });
+                            }
+                        });
+                        return [2 /*return*/, __spreadArray([], __read(uniqueValues), false)];
+                }
+            });
+        });
+    };
+    return PileupGetVisibleModifications;
+}(RpcMethodType_1.default));
+exports.PileupGetVisibleModifications = PileupGetVisibleModifications;
+//# sourceMappingURL=rpcMethods.js.map

package/dist/PileupRPC/rpcMethods.js.map

@@ -0,0 +1 @@
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package/dist/PileupRenderer/PileupLayoutSession.js

@@ -1,81 +1,61 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
 exports.PileupLayoutSession = void 0;
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _get2 = _interopRequireDefault(require("@babel/runtime/helpers/get"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _fastDeepEqual = _interopRequireDefault(require("fast-deep-equal"));
-
-var _BoxRendererType = require("@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType");
-
-var _configuration = require("@jbrowse/core/configuration");
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
+var fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
+var BoxRendererType_1 = require("@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType");
+var configuration_1 = require("@jbrowse/core/configuration");
 // Sorting and revealing soft clip changes the layout of Pileup renderer
 // Adds extra conditions to see if cached layout is valid
-var PileupLayoutSession = /*#__PURE__*/function (_LayoutSession) {
-  (0, _inherits2.default)(PileupLayoutSession, _LayoutSession);
-
-  var _super = _createSuper(PileupLayoutSession);
-
-  function PileupLayoutSession(args) {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, PileupLayoutSession);
-    _this = _super.call(this, args);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "sortedBy", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "filterBy", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "showSoftClip", false);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "cachedLayout", void 0);
-    _this.config = args.config;
-    return _this;
-  }
-
-  (0, _createClass2.default)(PileupLayoutSession, [{
-    key: "cachedLayoutIsValid",
-    value: function cachedLayoutIsValid(cachedLayout) {
-      return (0, _get2.default)((0, _getPrototypeOf2.default)(PileupLayoutSession.prototype), "cachedLayoutIsValid", this).call(this, cachedLayout) && this.showSoftClip === cachedLayout.showSoftClip && (0, _fastDeepEqual.default)(this.sortedBy, cachedLayout.sortedBy) && (0, _fastDeepEqual.default)(this.filterBy, cachedLayout.filterBy);
+var PileupLayoutSession = /** @class */ (function (_super) {
+    __extends(PileupLayoutSession, _super);
+    function PileupLayoutSession(args) {
+        var _this = _super.call(this, args) || this;
+        _this.showSoftClip = false;
+        _this.config = args.config;
+        return _this;
     }
-  }, {
-    key: "layout",
-    get: function get() {
-      if (!this.cachedLayout || !this.cachedLayoutIsValid(this.cachedLayout)) {
-        this.cachedLayout = {
-          layout: this.makeLayout(),
-          config: (0, _configuration.readConfObject)(this.config),
-          filters: this.filters,
-          filterBy: this.filterBy,
-          sortedBy: this.sortedBy,
-          showSoftClip: this.showSoftClip
-        };
-      }
-
-      return this.cachedLayout.layout;
-    }
-  }]);
-  return PileupLayoutSession;
-}(_BoxRendererType.LayoutSession);
-
-exports.PileupLayoutSession = PileupLayoutSession;
+    PileupLayoutSession.prototype.cachedLayoutIsValid = function (cachedLayout) {
+        return (_super.prototype.cachedLayoutIsValid.call(this, cachedLayout) &&
+            this.showSoftClip === cachedLayout.showSoftClip &&
+            (0, fast_deep_equal_1.default)(this.sortedBy, cachedLayout.sortedBy) &&
+            (0, fast_deep_equal_1.default)(this.filterBy, cachedLayout.filterBy));
+    };
+    Object.defineProperty(PileupLayoutSession.prototype, "layout", {
+        get: function () {
+            if (!this.cachedLayout || !this.cachedLayoutIsValid(this.cachedLayout)) {
+                this.cachedLayout = {
+                    layout: this.makeLayout(),
+                    config: (0, configuration_1.readConfObject)(this.config),
+                    filters: this.filters,
+                    filterBy: this.filterBy,
+                    sortedBy: this.sortedBy,
+                    showSoftClip: this.showSoftClip,
+                };
+            }
+            return this.cachedLayout.layout;
+        },
+        enumerable: false,
+        configurable: true
+    });
+    return PileupLayoutSession;
+}(BoxRendererType_1.LayoutSession));
+exports.PileupLayoutSession = PileupLayoutSession;
+//# sourceMappingURL=PileupLayoutSession.js.map

package/dist/PileupRenderer/PileupLayoutSession.js.map

@@ -0,0 +1 @@
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