@jbrowse/plugin-alignments 1.7.9 → 2.0.0

package/dist/LinearPileupDisplay/model.d.ts

@@ -1,8 +1,8 @@
 /// <reference types="react" />
+import { Instance } from 'mobx-state-tree';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { Feature } from '@jbrowse/core/util';
 import { ContentCopy as ContentCopyIcon } from '@jbrowse/core/ui/Icons';
-import { Instance } from 'mobx-state-tree';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
 import { LinearPileupDisplayConfigModel } from './configSchema';
 declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel) => import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -93,11 +93,11 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
     error: unknown;
 } & {
     readonly RenderingComponent: import("react").FC<{
-        model: import("mobx-state-tree").ModelInstanceTypeProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }> & {
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -112,11 +112,11 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
         blockState?: Record<string, any> | undefined;
     }>;
     readonly DisplayBlurb: import("react").FC<{
-        model: import("mobx-state-tree").ModelInstanceTypeProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }> & {
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
@@ -149,7 +149,7 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;
@@ -202,7 +202,9 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): {
         label: string;
-        icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         onClick: () => void;
     }[];
     renderProps(): any;
@@ -213,6 +215,7 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
 } & {
     colorTagMap: import("mobx").ObservableMap<string, string>;
     modificationTagMap: import("mobx").ObservableMap<string, string>;
+    featureUnderMouseVolatile: Feature | undefined;
     ready: boolean;
 } & {
     setReady(flag: boolean): void;
@@ -225,6 +228,7 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
     }): void;
     updateModificationColorMap(uniqueModifications: string[]): void;
     updateColorTagMap(uniqueTag: string[]): void;
+    setFeatureUnderMouse(feat?: Feature): void;
 } & {
     afterAttach(): void;
     selectFeature(feature: Feature): void;
@@ -250,6 +254,7 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
     readonly rendererConfig: any;
     readonly featureHeightSetting: any;
     readonly mismatchAlphaSetting: any;
+    readonly featureUnderMouse: Feature | undefined;
 } & {
     readonly rendererTypeName: string;
     contextMenuItems(): {
@@ -261,7 +266,9 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
     renderProps(): any;
     trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
         label: string;
-        icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         type: string;
         checked: boolean;
         onClick: () => void;
@@ -269,7 +276,9 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
         subMenu?: undefined;
     } | {
         label: string;
-        icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         disabled: boolean;
         subMenu: {
             label: string;
@@ -280,7 +289,9 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
         onClick?: undefined;
     } | {
         label: string;
-        icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         subMenu: {
             label: string;
             onClick: () => void;
@@ -291,7 +302,9 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
         disabled?: undefined;
     } | {
         label: string;
-        icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         onClick: () => void;
         type?: undefined;
         checked?: undefined;
@@ -307,10 +320,10 @@ declare const stateModelFactory: (configSchema: LinearPileupDisplayConfigModel)
         subMenu?: undefined;
     })[];
 }, import("mobx-state-tree")._NotCustomized, {
-    id: string;
     type: string;
-    rpcDriverName: string | undefined;
     height: number;
+    id: string;
+    rpcDriverName: string | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;